RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18158
(654 letters)
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 196
Score = 269 bits (688), Expect = 2e-87
Identities = 135/195 (69%), Positives = 166/195 (85%)
Query: 29 YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEV 88
YG+T+ ++L+ P + D T++L E LKP+ V E +EEL R+ +L KLNNLVKEWI+E+
Sbjct: 2 YGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREI 61
Query: 89 SIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT 148
S +KN+P +V E VGGKI+TFGSYRLGVH KGADIDALCVAPRHVDR+D+F+SF++KLK
Sbjct: 62 SESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKL 121
Query: 149 VDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVR 208
+EV DLRAVEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD LLKNLD +C+R
Sbjct: 122 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 181
Query: 209 SLNGCRVTDEILRLV 223
SLNGCRVTDEIL LV
Sbjct: 182 SLNGCRVTDEILHLV 196
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 150
Score = 264 bits (676), Expect = 3e-86
Identities = 73/149 (48%), Positives = 107/149 (71%)
Query: 224 PNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFL 283
P FR+ALR IKLWA++ +Y+N+ G+ GGV+WAMLVARICQLYPNA ++ ++ +FF+
Sbjct: 1 PKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFI 60
Query: 284 VFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTR 343
+ S+W WPQPV+LK ++ L VW+P++ DR H MP+ITPAYP +T N++ ST+
Sbjct: 61 ILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTK 120
Query: 344 TIMQEEFKQGKTISEDIYNGKTMWDKLFE 372
++ +EF +G I+ DI++ K W LFE
Sbjct: 121 KVILQEFVRGVQITNDIFSNKKSWANLFE 149
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 150
Score = 264 bits (675), Expect = 4e-86
Identities = 112/150 (74%), Positives = 127/150 (84%)
Query: 224 PNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFL 283
PNI+NFRL LR IKLWAK+H IYSN+LG+LGGVSWAMLVAR CQLYPNA ASTLV KFFL
Sbjct: 1 PNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFL 60
Query: 284 VFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTR 343
VFS+W+WP PVLLK+P+ NL PVWDPRVN +DRYHLMPIITPAYPQQNST+NVS+STR
Sbjct: 61 VFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTR 120
Query: 344 TIMQEEFKQGKTISEDIYNGKTMWDKLFET 373
+M EEFKQG I+++I K W KLFE
Sbjct: 121 MVMVEEFKQGLAITDEILLSKAEWSKLFEA 150
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 197
Score = 254 bits (651), Expect = 7e-82
Identities = 83/196 (42%), Positives = 123/196 (62%)
Query: 28 TYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKE 87
+G+T ++ + + L + LK ET++E ++R++VL L L + ++ E
Sbjct: 2 VFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYE 61
Query: 88 VSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLK 147
VS KN+ +A GGKI+T+GSYRLGVH G+DID L V P+HV R D+F+ F L+
Sbjct: 62 VSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLR 121
Query: 148 TVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCV 207
E+ ++ V +AFVP+IK+ F GI I ++ ARL ++P + L D LL+NLD+K +
Sbjct: 122 ERKELDEIAPVPDAFVPIIKIKFSGISIALICARLDQPQVPLSLTLSDKNLLRNLDEKDL 181
Query: 208 RSLNGCRVTDEILRLV 223
R+LNG RVTDEIL LV
Sbjct: 182 RALNGTRVTDEILELV 197
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 134
Score = 150 bits (381), Expect = 1e-43
Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 27/157 (17%)
Query: 374 PNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDT 433
PNFF KY+HY+VL+AS+ + + +LEW GL+ESK+R L+G+LE+N I LAHVNP+ +
Sbjct: 1 PNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPA- 59
Query: 434 TGVIANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQ 489
+ E +MW IGL F + N+ ++LTYDIQ
Sbjct: 60 ---------------PKENPDKEEFR-------TMWVIGLVFKKTENSENLSVDLTYDIQ 97
Query: 490 HFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLP 526
FT+ V+ QA SKM + MKI HVK+KQL + LP
Sbjct: 98 SFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLP 134
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 178
Score = 137 bits (346), Expect = 3e-38
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 375 NFFTKYRHYLVLIASSVSAEDQ-LEWCGLIESKVRHLIGNLERNPHINLAHVNPECYT-- 431
+FF +Y+ YL + A + +++Q L+W GL+ESKVR L+ LE I +AH + +
Sbjct: 2 DFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESS 61
Query: 432 ------DTTGVIANGSGS----------PEITAEGKEEGGENTSPPVSGVASMWFIGLDF 475
D +I + GS +T E KEE +P S +IGLDF
Sbjct: 62 YCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAY--LSTMYIGLDF 119
Query: 476 --IAANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYL 525
+++ F N + + +R VK L + +
Sbjct: 120 NIENKKEKVDIHIPCTEFVNLCR-SFNEDYGDHKVFNLALRFVKGYDLPDEV 170
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl
transferase 2, TUTase 2, RET2 {Trypanosoma brucei
[TaxId: 5691]}
Length = 183
Score = 65.7 bits (159), Expect = 6e-13
Identities = 16/179 (8%), Positives = 37/179 (20%), Gaps = 36/179 (20%)
Query: 229 FRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYP------------------ 270
R +K W K + + L + ++ +
Sbjct: 4 ARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPR 63
Query: 271 -----------NAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNL---GFPVWDPRVNVA 316
L+ FF+ ++ + ++ N P+
Sbjct: 64 YPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKG 123
Query: 317 DRYHLMPIITPAYPQQNSTFNVSISTRTIM----QEEFKQGKTISEDIYNGKTMWDKLF 371
+ I P N+ ++EF + E +
Sbjct: 124 TFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLPTNAPEKSIL 182
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus
influenzae [TaxId: 727]}
Length = 100
Score = 34.8 bits (80), Expect = 0.005
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 86 KEVSIAKNIPPTVAEKVGG-KIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYF--SSF 142
+E++I K I + + V ++ FGS G K +D+D ++ +D
Sbjct: 7 EELAIVKTI---LQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFLARDRLKEA 63
Query: 143 FEKLKT---VDEVTDLRAVEEAFVPVIK 167
F + VD + D E F +I+
Sbjct: 64 FSESDLPWRVD-LLDWATTSEDFREIIR 90
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 98
Score = 32.5 bits (74), Expect = 0.026
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 105 KIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFS--SFFEKL--KTVDEVTDLRAVEE 160
++ FGS G + +D+D L D+ E L VD + R +
Sbjct: 27 RVRVFGSVARGEAREDSDLDLLVAFEEGRTLLDHARLKLALEGLLGVRVD-IVSERGLAP 85
Query: 161 AFVPVIKMNFDGIEI 175
+ + I +
Sbjct: 86 RLREQVLR--EAIPL 98
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase
(KNTase), N-terminal domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 125
Score = 32.2 bits (73), Expect = 0.056
Identities = 17/124 (13%), Positives = 33/124 (26%), Gaps = 16/124 (12%)
Query: 68 SSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALC 127
+ + +V E + I V I +GS +DI+ +C
Sbjct: 3 GPIIMTREERMKIVHEIKER--ILDKYGDDVK-----AIGVYGSLGRQTDGPYSDIEMMC 55
Query: 128 VAPRHVDRADYFSSFFEKLKTVDEVT------DLRAVEEAFVPVIKMNFDGIEI---DML 178
V + + E V+ + VE + F + I
Sbjct: 56 VMSTEEAEFSHEWTTGEWKVEVNFYSEEILLDYASQVESDWPLTHGQFFSILPIYDSGGY 115
Query: 179 FARL 182
++
Sbjct: 116 LEKV 119
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 90
Score = 29.0 bits (65), Expect = 0.42
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 85 IKEVSIAKNIPPTVAEKVGGKIYTFGSYRLG-VHHKGADIDALCVAPRHVDR 135
IKE+ K++ +IY +GS G +DID V+ DR
Sbjct: 4 IKEI-TKKDVQDA-------EIYLYGSVVEGDYSIGLSDIDVAIVSDVFEDR 47
>d1tr0a_ d.58.4.4 (A:) Boiling stable protein 1 {European aspen
(Populus tremula) [TaxId: 113636]}
Length = 106
Score = 28.8 bits (64), Expect = 0.71
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 63 TDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGAD 122
T E++ + + + L +L+ +K + ++ AE G YT +
Sbjct: 20 TREQIDNYINDYTNLLDLIPS-MKSFNWGTDLGMESAELNRG--YTHAFE--STFESKSG 74
Query: 123 IDALCVAPRHVDRADYFSSFFEKLKTVD 150
+ + A+ F + +D
Sbjct: 75 LQEYLDSAALAAFAEGFLPTLSQRLVID 102
>d1rjja_ d.58.4.4 (A:) Hypothetical protein AT5G22580 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 111
Score = 28.4 bits (63), Expect = 1.2
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 72 EVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPR 131
E+L L NLV + I V + + + + +T A P
Sbjct: 22 EILKGLENLVSQ-IDTVKSFEWGEDKESHDMLRQGFTHAFS--MTFENKDGYVAFTSHPL 78
Query: 132 HVDRADYFSSFFEKLKTVD-EVTDLRA 157
HV+ + F++ +K+ +D V +++
Sbjct: 79 HVEFSAAFTAVIDKIVLLDFPVAAVKS 105
>d1qsra_ d.108.1.1 (A:) Catalytic domain of GCN5 histone
acetyltransferase {Tetrahymena thermophila [TaxId:
5911]}
Length = 162
Score = 28.5 bits (63), Expect = 1.4
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 61 SETDEELSSRMEVLSK-LNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHK 119
+ L + S+ L + KE+I ++ ++ V K K+ +R +
Sbjct: 12 HRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKVIGGICFRQYKPQR 71
Query: 120 GADIDALCVAPRH 132
A++ L V
Sbjct: 72 FAEVAFLAVTANE 84
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Length = 447
Score = 28.8 bits (64), Expect = 2.0
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 409 HLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGVASM 468
L L +N+ ++ E Y++T G S + A K + +
Sbjct: 188 GLDHVLASGEDVNVFVMDTEVYSNTGG---QSSKATPTGAVAKFAAAGKRTGKKDLARMV 244
Query: 469 WFIGLDFIAANVILNLTYDIQHFTNAV 495
G ++A + Y Q F +
Sbjct: 245 MTYGYVYVATVSM---GYSKQQFLKVL 268
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 27.2 bits (59), Expect = 2.6
Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 17/114 (14%)
Query: 295 LLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGK 354
L K+ + + W R + + QQ F + +
Sbjct: 15 LEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR---- 70
Query: 355 TISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVR 408
K + A+ S +D EW ++ ++
Sbjct: 71 -----------KDGKKDCCFEICAPDKRIYQFTAA--SPKDAEEWVQQLKFILQ 111
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 28.0 bits (61), Expect = 3.2
Identities = 30/251 (11%), Positives = 67/251 (26%), Gaps = 30/251 (11%)
Query: 225 NIENFRLALRT-IKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ--LYPNAAASTLVCKF 281
+ + + L ++ +K G V G GG+ A +V +CQ NA A +
Sbjct: 2 DYQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSA-VVGVLCQKVFKENAHALLMPSSV 60
Query: 282 FLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSIS 341
+ L + ++ P + + +T +
Sbjct: 61 ---SMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLY 117
Query: 342 TRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCG 401
++ + G + + G + T + I
Sbjct: 118 DYSLKSDSLVIGTSNKSERMLG------------YGTLFGDLACAI---------NPIGE 156
Query: 402 LIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITA--EGKEEGGENTS 459
L +++V L L I + + + + G I + E +
Sbjct: 157 LFKTEVYELARRLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKP 216
Query: 460 PPVSGVASMWF 470
+A + +
Sbjct: 217 IDTETLAQLGY 227
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435
{Salmonella typhimurium [TaxId: 90371]}
Length = 271
Score = 27.9 bits (61), Expect = 4.0
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 16/168 (9%)
Query: 158 VEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTD 217
+E F V ++ F+ +E+ ++ + + +R+ L+ + ++
Sbjct: 20 IEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLT 79
Query: 218 EILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLG---GVSWAMLVARICQLYPNAAA 274
E E + ++ A+ G + VL L V + V I +L A
Sbjct: 80 E--------EVVKKTEGLLRD-AQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFA- 129
Query: 275 STLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLM 322
+ + L L P + D +H
Sbjct: 130 ---RYDIQGLVEPLGFRVSSLRSAVWAQQLIREAGSPFKVLLDTFHHH 174
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 27.7 bits (61), Expect = 4.1
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 103 GGKIYTFGSYRLGVHHKGADIDA 125
++ +G Y G H G D
Sbjct: 151 RKQLQPYGQYHGGGAHYGVDYAM 173
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 27.5 bits (61), Expect = 6.4
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 146 LKTVDEVTDLRAVEEAFVPVIKMNFDGIEID 176
LK + EVT+ E + F I +D
Sbjct: 19 LKKIPEVTNWETFENDLRWAKQNGFYAITVD 49
>d1q4ra_ d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 103
Score = 25.7 bits (56), Expect = 7.4
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 63 TDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGAD 122
+ E++ ++ + L NL++ +K K++ + YT
Sbjct: 15 SPEKIEELIKGYANLVNLIEP-MKAFHWGKDVSIENLHQ----GYTHIFE--STFESKEA 67
Query: 123 IDALCVAPRHVDRADYFSSFFEKLKTVD 150
+ P HV+ A F +K+ +D
Sbjct: 68 VAEYIAHPAHVEFATIFLGSLDKVLVID 95
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 26.9 bits (59), Expect = 7.5
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 125 ALCVAPRHVDRADYFSSFFEKLKTV----DEVTDLRAVEEAFVPVIKMNFDGIEIDMLFA 180
A+CV P HV A + K+ V + + V ++ E+D+++
Sbjct: 36 AVCVNPYHVKLASSIAKKV-KVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQ--ELDIVWN 92
Query: 181 RLALKEIPDDMDLRDDMLLKNLDQKCVRS--LNGCRVTDEILRLV 223
A K D + + + V + + +E ++
Sbjct: 93 LSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKA 137
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.1 bits (59), Expect = 8.6
Identities = 39/274 (14%), Positives = 72/274 (26%), Gaps = 31/274 (11%)
Query: 369 KLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPE 428
L + + K YL + SV E LI + +++ + + RNP ++
Sbjct: 73 NLLSSNRYTEKQIGYLFI---SVLVNSNSELIRLINNAIKNDLAS--RNPTFMGLALH-- 125
Query: 429 CYTDTTGVIANGSGSPEITAEGKEE-----GGENTSPPVSGVASMWFIGL------DFIA 477
IAN GS E+ E +T V A++ + L
Sbjct: 126 -------CIAN-VGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM 177
Query: 478 ANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTK 537
+ + + + V AT E L + +
Sbjct: 178 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQ 237
Query: 538 SGDQNTSAKKRKSDQALDELGDKSRPRLDSDSNSLSDKVNNISNNGDQSSSECTEDNSLS 597
S + L L P + L++ + I N + +
Sbjct: 238 DYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP-----KSKKV 292
Query: 598 QVYGLNDSVADSIDNSLDDLSSTSPHPTPPVKVL 631
Q ++V + + S L
Sbjct: 293 QHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQL 326
>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme
{Pseudomonas putida [TaxId: 303]}
Length = 242
Score = 26.5 bits (57), Expect = 9.0
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 166 IKMNFDGIEIDMLFARLALKEIPDDMDLRDDM 197
+K+ + +E D+ +E+ D +R D+
Sbjct: 38 LKIGANPVEQDLKHVVTIKRELGDSASVRVDV 69
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 26.8 bits (59), Expect = 9.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 71 MEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKI 106
E+L+K+N +K+W + A ++ T AE + +
Sbjct: 392 REILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRF 427
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,432,937
Number of extensions: 116572
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 26
Length of query: 654
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 563
Effective length of database: 1,158,166
Effective search space: 652047458
Effective search space used: 652047458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)