Query psy18159
Match_columns 294
No_of_seqs 234 out of 1708
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0653|consensus 100.0 2E-46 4.3E-51 357.4 16.7 220 68-292 109-330 (391)
2 COG5024 Cyclin [Cell division 100.0 8.1E-46 1.8E-50 351.1 13.2 221 67-292 162-384 (440)
3 KOG0654|consensus 100.0 6.9E-38 1.5E-42 290.0 9.9 214 75-293 92-309 (359)
4 KOG0655|consensus 100.0 1E-36 2.2E-41 273.8 14.8 182 86-272 113-307 (408)
5 KOG0656|consensus 100.0 1.5E-33 3.2E-38 259.1 21.2 191 87-282 46-246 (335)
6 PF00134 Cyclin_N: Cyclin, N-t 99.9 3.1E-27 6.7E-32 190.7 10.3 126 88-218 1-127 (127)
7 TIGR00569 ccl1 cyclin ccl1. Un 99.9 1.4E-23 3.1E-28 193.2 15.9 159 120-279 54-223 (305)
8 KOG0834|consensus 99.8 1E-20 2.3E-25 174.3 10.0 161 117-278 34-211 (323)
9 COG5333 CCL1 Cdk activating ki 99.8 1.3E-19 2.8E-24 163.5 13.8 164 119-283 42-213 (297)
10 KOG0835|consensus 99.8 3.3E-18 7.1E-23 154.6 13.2 169 116-285 17-211 (367)
11 KOG0794|consensus 99.7 3.2E-17 6.9E-22 141.9 8.5 158 122-279 41-211 (264)
12 PRK00423 tfb transcription ini 99.6 2.6E-14 5.6E-19 132.9 19.8 165 123-290 123-287 (310)
13 cd00043 CYCLIN Cyclin box fold 99.6 9.4E-15 2E-19 108.7 8.0 88 121-210 1-88 (88)
14 PF02984 Cyclin_C: Cyclin, C-t 99.5 2.5E-14 5.5E-19 113.3 5.6 74 220-293 1-75 (118)
15 smart00385 CYCLIN domain prese 99.5 6.2E-14 1.3E-18 103.2 7.1 83 127-211 1-83 (83)
16 KOG2496|consensus 99.4 4.9E-12 1.1E-16 113.9 14.0 150 122-272 56-218 (325)
17 COG1405 SUA7 Transcription ini 99.3 3.9E-10 8.4E-15 103.2 17.9 168 122-292 97-264 (285)
18 KOG1597|consensus 99.2 2.9E-10 6.3E-15 102.2 15.7 164 124-290 106-271 (308)
19 smart00385 CYCLIN domain prese 98.8 1.2E-08 2.6E-13 74.6 7.3 68 224-291 1-68 (83)
20 cd00043 CYCLIN Cyclin box fold 98.8 4E-08 8.7E-13 72.6 8.7 73 219-291 2-74 (88)
21 PF08613 Cyclin: Cyclin; Inte 98.5 3.3E-07 7.1E-12 76.4 8.4 92 124-217 53-149 (149)
22 KOG1598|consensus 97.9 4.8E-05 1E-09 74.0 8.8 148 128-279 73-226 (521)
23 KOG4164|consensus 97.7 2.5E-05 5.3E-10 73.2 3.7 97 124-220 384-482 (497)
24 PF00382 TFIIB: Transcription 97.2 0.0011 2.4E-08 47.9 5.7 65 129-194 1-65 (71)
25 PF00382 TFIIB: Transcription 97.1 0.0041 9E-08 44.9 8.3 65 226-290 1-65 (71)
26 PRK00423 tfb transcription ini 96.1 0.035 7.7E-07 51.8 9.2 90 125-217 219-308 (310)
27 KOG1674|consensus 95.2 0.052 1.1E-06 48.1 6.5 95 124-220 77-181 (218)
28 KOG1675|consensus 94.4 0.071 1.5E-06 49.1 5.1 92 137-230 205-298 (343)
29 PF00134 Cyclin_N: Cyclin, N-t 93.0 0.56 1.2E-05 36.9 7.7 69 223-291 35-104 (127)
30 PF02984 Cyclin_C: Cyclin, C-t 91.0 0.6 1.3E-05 36.0 5.6 87 126-214 4-90 (118)
31 COG1405 SUA7 Transcription ini 89.3 1.9 4.1E-05 39.8 8.1 89 123-214 192-280 (285)
32 PF09241 Herp-Cyclin: Herpesvi 83.6 10 0.00023 28.2 7.8 69 222-290 4-78 (106)
33 KOG0834|consensus 81.6 3.8 8.2E-05 38.5 6.1 64 223-286 43-106 (323)
34 TIGR00569 ccl1 cyclin ccl1. Un 81.5 4.2 9E-05 37.9 6.3 55 225-279 62-118 (305)
35 KOG1597|consensus 67.1 16 0.00035 33.7 6.1 69 125-194 203-271 (308)
36 PF01857 RB_B: Retinoblastoma- 66.1 16 0.00035 29.8 5.4 68 125-193 14-83 (135)
37 PF08613 Cyclin: Cyclin; Inte 63.0 57 0.0012 26.7 8.3 76 218-293 50-131 (149)
38 KOG0835|consensus 54.1 53 0.0011 31.0 7.0 69 135-205 151-221 (367)
39 KOG0794|consensus 51.6 35 0.00075 30.6 5.2 55 225-279 47-101 (264)
40 COG5333 CCL1 Cdk activating ki 44.1 27 0.00059 32.4 3.6 54 224-277 50-103 (297)
41 KOG0656|consensus 43.8 1E+02 0.0023 29.1 7.5 68 224-291 83-155 (335)
42 PF12550 GCR1_C: Transcription 27.9 2.4E+02 0.0052 20.5 6.6 67 79-153 8-80 (81)
43 PF14376 Haem_bd: Haem-binding 25.3 55 0.0012 26.6 2.2 30 99-131 106-135 (137)
44 PRK03958 tRNA 2'-O-methylase; 22.5 54 0.0012 28.1 1.6 39 234-279 114-152 (176)
45 PF01466 Skp1: Skp1 family, di 22.2 93 0.002 22.5 2.7 42 164-206 29-70 (78)
46 PF13936 HTH_38: Helix-turn-he 21.9 1.5E+02 0.0032 18.9 3.3 32 116-147 4-41 (44)
No 1
>KOG0653|consensus
Probab=100.00 E-value=2e-46 Score=357.36 Aligned_cols=220 Identities=40% Similarity=0.633 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCCcchhhhHHHHHHHHHHHHhhCCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q psy18159 68 VDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAV 147 (294)
Q Consensus 68 ~~~~d~~~~~~p~~~~eY~~dI~~~l~~~E~~~~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv 147 (294)
+.|+|..+..+|.++.||++|||.|++.+|..+.+..|+..+. +++..||++++|||++||.+|+|.+||+|+||
T Consensus 109 ~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~~~p~~~~~~~~-----e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaV 183 (391)
T KOG0653|consen 109 ILDLDSEDKSDPSMIVEYVQDIFEYLRQLELEFLPLSYDISQS-----EIRAKMRAILVDWLVEVHEKFGLSPETLYLAV 183 (391)
T ss_pred ccCcchhcccCcHHHHHHHHHHHHHHHHHHHhhCchhhhcccc-----cccHHHHHHHHHHHHHhhhhcCcCHHHHHHHH
Confidence 7788999999999999999999999999995444444556666 99999999999999999999999999999999
Q ss_pred HHHHHHhhhccccccchhhhhhhhhh-hhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHH
Q psy18159 148 KLVDLYLGKVVCSRLNLQLLGATAIF-VSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFL 226 (294)
Q Consensus 148 ~ilDRfls~~~v~~~~lqLvg~acL~-IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl 226 (294)
+++||||++..|++.++||+|++||| ||||+||..+|.+.|++++++++||+++|++||+.||++|+|+++.|+|+.||
T Consensus 184 nliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FL 263 (391)
T KOG0653|consen 184 NLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFL 263 (391)
T ss_pred HHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHH
Confidence 99999999999999999999999976 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCC-ChHHHHHhcCcc
Q psy18159 227 RRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTP-WNKTLEYYSEEK 292 (294)
Q Consensus 227 ~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~-W~~~L~~~sgY~ 292 (294)
++|.++...+...+.++++++|++++|+.++.++||.+|+|++++++.+...+. |+.++.+||||+
T Consensus 264 rr~~ka~~~d~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~~~~~~~~~~~~w~~~~~~~sg~~ 330 (391)
T KOG0653|consen 264 RRFLKAADYDIKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFTLALRMLSKGDVWSPTLEHYSGYS 330 (391)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHHHHHHHhccCCccCCCCeeccCCC
Confidence 999999999999999999999999999999999999999999999999999885 999999999985
No 2
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.1e-46 Score=351.13 Aligned_cols=221 Identities=35% Similarity=0.538 Sum_probs=215.8
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhhC-CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy18159 67 DVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYL 145 (294)
Q Consensus 67 ~~~~~d~~~~~~p~~~~eY~~dI~~~l~~~E~~~-~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~l 145 (294)
.++|+|.++..||.++.||+.|||.||..+|..+ +.++||.+|+ .+.+.||.++++|+.++|..|++.++|+++
T Consensus 162 ~~~dld~~~~~d~~mv~Ey~~~Ife~l~k~e~~~lp~~~yl~kq~-----~~~~~mR~~Lv~wlvevH~~F~llpeTL~l 236 (440)
T COG5024 162 SWQDLDATDQEDPLMVPEYASDIFEYLLKLELIDLPNPNYLIKQS-----LYEWSMRSILVDWLVEVHGKFGLLPETLFL 236 (440)
T ss_pred CccccccccccCccchHHHHHHHHHHHHHHHHHhcCcHHHHhhcc-----hhHHhHHHHHHHHHHHhcccccccchHHHH
Confidence 4679999999999999999999999999999986 8889999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHH
Q psy18159 146 AVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRF 225 (294)
Q Consensus 146 Av~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~F 225 (294)
||+++||||+...+.-.++||+|++|||||||+||.++|.+.+|++++++.|+.++|+++|+.+|.+|+|+++.|+|..|
T Consensus 237 ainiiDrfLs~~~v~l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~~i~~aE~~ml~~l~f~is~P~P~sF 316 (440)
T COG5024 237 AINIIDRFLSSRVVSLEKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNISWPSPMSF 316 (440)
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHHHHHHHHHHHhhhcccccCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcC-cc
Q psy18159 226 LRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSE-EK 292 (294)
Q Consensus 226 l~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sg-Y~ 292 (294)
+|++.++.+.+...++.++|+++.+..++.|+.++||.+||||.++|+.+++.+.|+.+|.+||| |+
T Consensus 317 LRriSka~dyd~~srt~~k~~~e~s~~~~~f~~~~~S~~~aaa~~~s~~~~~~~~w~~~l~~ySg~y~ 384 (440)
T COG5024 317 LRRISKASDYDIFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILSQNQWDRTLIHYSGNYT 384 (440)
T ss_pred HHHHHhhcccchhhhhhHhhhCCchHhhhhhccCCchHHHHHHHHHHHhhhccCCCCccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 86
No 3
>KOG0654|consensus
Probab=100.00 E-value=6.9e-38 Score=289.98 Aligned_cols=214 Identities=35% Similarity=0.604 Sum_probs=205.4
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhh-C-CCCCccCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q psy18159 75 TWEDPLQVSCYAMHIFEYLKSREAE-F-QIKDYLPF-QSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVD 151 (294)
Q Consensus 75 ~~~~p~~~~eY~~dI~~~l~~~E~~-~-~~~~yl~~-q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilD 151 (294)
+..||++|..|+.+|+++++.-|.+ . +.++|++. |. ++++.||.++|||++++.+.+++..+++|++++++|
T Consensus 92 ~~~dp~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~vq~-----d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~d 166 (359)
T KOG0654|consen 92 VGEDPQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFVQA-----DITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRD 166 (359)
T ss_pred cccchHHHHHHHHHHhhcccccchhhccCcccceeeeec-----CCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHH
Confidence 4578999999999999999999987 5 77889998 77 999999999999999999999999999999999999
Q ss_pred HHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH
Q psy18159 152 LYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 231 (294)
Q Consensus 152 Rfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~ 231 (294)
||+....+.+.++|++|.+|++||+|+||+.+|.+.+|++++++.|+..++..||..||+.|.|.+..||...|+++|.+
T Consensus 167 rfl~~~~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~~~~l~~~~~ 246 (359)
T KOG0654|consen 167 RFLSYKEVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTSKTFLRRFLR 246 (359)
T ss_pred HHhccCccHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HcC-CChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCccc
Q psy18159 232 CNR-IQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKL 293 (294)
Q Consensus 232 ~~~-~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY~~ 293 (294)
+.. ...++..++.|++|+++.|+.|+.|.||.|||||+++|+.+++..+|+++|++||||++
T Consensus 247 ~~~~~~~~~e~~~~yl~elsll~~~~l~y~PSliAasAv~lA~~~~~~~pW~~~L~~~T~y~~ 309 (359)
T KOG0654|consen 247 VAQTPELQVEPLANYLTELSLLDYIFLKYLPSLIAASAVFLARLTLDFHPWNQTLEDYTGYKA 309 (359)
T ss_pred hhcchhHHHHHHHHHHHHhhhhhHHHhccChHHHHHHHHHHHHhhccCCCCchhhHHhhcccH
Confidence 765 56788899999999999999999999999999999999999998899999999999985
No 4
>KOG0655|consensus
Probab=100.00 E-value=1e-36 Score=273.79 Aligned_cols=182 Identities=27% Similarity=0.509 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhhC-CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhc-cccccc
Q psy18159 86 AMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKV-VCSRLN 163 (294)
Q Consensus 86 ~~dI~~~l~~~E~~~-~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~-~v~~~~ 163 (294)
..+.|..|..+|..+ ....++..+| .+.++||++|+|||++||+.++|.+||||+|+-||||||... .+.+.+
T Consensus 113 ~~eVW~lM~kkee~~l~~~~~l~qHp-----dlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~~~v~kt~ 187 (408)
T KOG0655|consen 113 SKEVWLLMLKKEERYLRDKHFLEQHP-----DLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQVEVSKTN 187 (408)
T ss_pred HHHHHHHHHccchhhhhhhHHHhhCC-----CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 579999888888765 6678888899 999999999999999999999999999999999999999654 599999
Q ss_pred hhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCCh------
Q psy18159 164 LQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQL------ 237 (294)
Q Consensus 164 lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~------ 237 (294)
|||||+||||||+|+||++||.+.+|.|++|++||.++|+.||..||++|+|+|++.|...||..|+.....+.
T Consensus 188 lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~ddIltmE~iilkal~W~l~PiTii~WL~vylQv~~~n~~~k~l~ 267 (408)
T KOG0655|consen 188 LQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDDILTMELIILKALKWELSPITIISWLNVYLQVDALNDAPKVLL 267 (408)
T ss_pred HHHhhHHHHHHHHHHhhccCccccceeeeccCccchHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHhcCCCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754321
Q ss_pred -----hHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHH
Q psy18159 238 -----PLLTLARYILELSLMEYSLIRESDSKLACASLYLA 272 (294)
Q Consensus 238 -----~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA 272 (294)
...--...+|++++.|...+.|+-+.+|||||+.-
T Consensus 268 Pq~~~~efiqiaqlLDlc~ldids~~fsYrilaAAal~h~ 307 (408)
T KOG0655|consen 268 PQYSQEEFIQIAQLLDLCILDIDSLEFSYRILAAAALCHF 307 (408)
T ss_pred cccchHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 12222235889999999999999999999999854
No 5
>KOG0656|consensus
Probab=100.00 E-value=1.5e-33 Score=259.07 Aligned_cols=191 Identities=18% Similarity=0.297 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHh-hCCCCCcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccc-
Q psy18159 87 MHIFEYLKSREA-EFQIKDYL-PFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLN- 163 (294)
Q Consensus 87 ~dI~~~l~~~E~-~~~~~~yl-~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~- 163 (294)
+++...|...|. ..|..+|. ..|. .+++.||.++++||.+||.++++.++|+++|+||||||++...+++++
T Consensus 46 e~~i~~ll~kEe~~~p~~~~~~~~~~-----~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~ 120 (335)
T KOG0656|consen 46 ERVLANLLEKEEQHNPSLDYFLCVQK-----LILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKP 120 (335)
T ss_pred HHHHHHHHHHHHHhCCCCchhhhccc-----ccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCch
Confidence 455555555554 45666643 3355 899999999999999999999999999999999999999999999999
Q ss_pred --hhhhhhhhhhhhccCCCCCCCChhh-HHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCC----
Q psy18159 164 --LQLLGATAIFVSSKFDDRIPPQLSD-LEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQ---- 236 (294)
Q Consensus 164 --lqLvg~acL~IAsK~eE~~~~~i~d-l~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~---- 236 (294)
+||+|+|||+||||+||...|.+.| .+..+++.|.++.|.+||+.||++|+|+++.+||++|+++|++..+..
T Consensus 121 W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~ 200 (335)
T KOG0656|consen 121 WMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNK 200 (335)
T ss_pred HHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchH
Confidence 9999999999999999997555555 467779999999999999999999999999999999999999877653
Q ss_pred hhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCCh
Q psy18159 237 LPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWN 282 (294)
Q Consensus 237 ~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~ 282 (294)
.....-+..++-.+..|..|+.|+||.||+|++.++....+.-.|.
T Consensus 201 ~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~ 246 (335)
T KOG0656|consen 201 HLFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFR 246 (335)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhh
Confidence 3445566677777888999999999999999998877765544443
No 6
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.94 E-value=3.1e-27 Score=190.70 Aligned_cols=126 Identities=37% Similarity=0.693 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhhC-CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhh
Q psy18159 88 HIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQL 166 (294)
Q Consensus 88 dI~~~l~~~E~~~-~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqL 166 (294)
||+.++.+.|.++ +++.|++.++ +++..+|..+++||.+++..++++++|+++|+.++|||+.+.++.+.++++
T Consensus 1 ~i~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~~~~~~~l 75 (127)
T PF00134_consen 1 DIFRYLLEKELKYKPNPDYLEQQP-----EITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPVNRSKLQL 75 (127)
T ss_dssp HHHHHHHHHHHHTTCCTTHGTGTS-----SHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-TTCCGHHH
T ss_pred CHHHHHHHHHHHHCcCccccccCh-----hcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccccchhhh
Confidence 7999999999986 6789998887 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCC
Q psy18159 167 LGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLG 218 (294)
Q Consensus 167 vg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~ 218 (294)
+|+||++||+|++|..+|.+.+++.++++.|++++|.+||+.||++|||+++
T Consensus 76 i~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 76 IALACLFLASKMEEDNPPSISDLIRISDNTFTKKDILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHHHHHHHHHHHHHTTT---
T ss_pred hhhhHHHHhhhhhccccchHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCCcC
Confidence 9999999999999999999999999999999999999999999999999985
No 7
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=99.91 E-value=1.4e-23 Score=193.23 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCC-
Q psy18159 120 EMRSVLVDWMVEVQETFE--LNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHT- 196 (294)
Q Consensus 120 ~~R~~lvdWl~~v~~~~~--l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~- 196 (294)
.+|....+.|.++|.+|+ |+++|+.+|+.||+||+...++...+.++||+||+|||||+||.. .++.+++......
T Consensus 54 ~l~~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvEE~~-~si~~fv~~~~~~~ 132 (305)
T TIGR00569 54 DLVKYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEEFN-VSIDQFVGNLKETP 132 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhccccC-cCHHHHHhhccCCc
Confidence 778888999999999999 999999999999999999999999999999999999999999964 5799998766543
Q ss_pred -cCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHc-------CCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHH
Q psy18159 197 -YSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCN-------RIQLPLLTLARYILELSLMEYSLIRESDSKLACAS 268 (294)
Q Consensus 197 -yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~-------~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAa 268 (294)
..+++|++||..||+.|+|++.+++|+.++..|+.-. .....+...|+.++..++....++.|+||.||+||
T Consensus 133 ~~~~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~~l~~~~~~~~l~q~a~~~lndsl~Td~~L~y~Ps~IAlAA 212 (305)
T TIGR00569 133 LKALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKTRLPGLENPEYLRKHADKFLNRTLLTDAYLLYTPSQIALAA 212 (305)
T ss_pred hhhHHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCceecCCHHHHHHHH
Confidence 3568999999999999999999999999999987422 12235667888888888888889999999999999
Q ss_pred HHHHHHhcCCC
Q psy18159 269 LYLAQKMNKLT 279 (294)
Q Consensus 269 l~lA~~~~~~~ 279 (294)
|++|...++..
T Consensus 213 I~lA~~~~~~~ 223 (305)
T TIGR00569 213 ILHTASRAGLN 223 (305)
T ss_pred HHHHHHHhCCC
Confidence 99999988764
No 8
>KOG0834|consensus
Probab=99.83 E-value=1e-20 Score=174.30 Aligned_cols=161 Identities=19% Similarity=0.321 Sum_probs=145.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCC
Q psy18159 117 INAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHT 196 (294)
Q Consensus 117 i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~ 196 (294)
-....|.....||++++.+++++..|+.+|+.|++||+...+......+.+|++|+|+|+|+|| .|..++|++..+...
T Consensus 34 ~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvEe-tp~kl~dIi~~s~~~ 112 (323)
T KOG0834|consen 34 KELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVEE-TPRKLEDIIKVSYRY 112 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhccc-CcccHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999988 566899988665332
Q ss_pred cC-------------HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCCh----hHHHHHHHHHHHHhcchhccCC
Q psy18159 197 YS-------------IQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQL----PLLTLARYILELSLMEYSLIRE 259 (294)
Q Consensus 197 yt-------------~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~----~~~~la~~llel~l~d~~~l~~ 259 (294)
+. ++.|+..|+.||++|+||+++-+|+.||-.|++..+... .....|+.++..++.....+.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y 192 (323)
T KOG0834|consen 113 LNPKDLELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADENLKQPLAQAAWNFVNDSLRTTLCLQY 192 (323)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhhccccHHHHHHHHhchhheeeeeEee
Confidence 22 578999999999999999999999999999999877655 4788999999999999988999
Q ss_pred cHHHHHHHHHHHHHHhcCC
Q psy18159 260 SDSKLACASLYLAQKMNKL 278 (294)
Q Consensus 260 ~PS~iAaAal~lA~~~~~~ 278 (294)
+|..||+|||++|..+.|.
T Consensus 193 ~p~~IAva~i~lA~~~~~~ 211 (323)
T KOG0834|consen 193 SPHSIAVACIHLAAKLLGV 211 (323)
T ss_pred cCcEEEeehhhHHHHHcCC
Confidence 9999999999999998875
No 9
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=99.82 E-value=1.3e-19 Score=163.50 Aligned_cols=164 Identities=17% Similarity=0.244 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcC---
Q psy18159 119 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSH--- 195 (294)
Q Consensus 119 ~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~--- 195 (294)
...|..-..|+..+|.+++++..++.+|+.+++||..+.++....++-++.||+++|||+||. |..+.-.....++
T Consensus 42 ~~l~i~~~k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed~-~~~I~i~~~~~~~~~s 120 (297)
T COG5333 42 LNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDT-PRDISIESFEARDLWS 120 (297)
T ss_pred hhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeecccc-cchhhHHHHHhhcccc
Confidence 466777789999999999999999999999999999999999999999999999999999995 3333333333332
Q ss_pred ---CcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCCh--hHHHHHHHHHHHHhcchhccCCcHHHHHHHHHH
Q psy18159 196 ---TYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQL--PLLTLARYILELSLMEYSLIRESDSKLACASLY 270 (294)
Q Consensus 196 ---~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~--~~~~la~~llel~l~d~~~l~~~PS~iAaAal~ 270 (294)
.-+++.|.++|..+|+.|+|++.+++|+..+..|+....... +..++|+-++..++.....+.|+|..||+||+.
T Consensus 121 e~~~~sr~~Il~~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~~~~~~~~aw~~inDa~~t~~~llypphiIA~a~l~ 200 (297)
T COG5333 121 EEPKSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRTDLCLLYPPHIIALAALL 200 (297)
T ss_pred ccccccHHHHHHHHHHHHHHcccceEeccccHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhceeeeecChHHHHHHHHH
Confidence 235899999999999999999999999999999998765544 489999999999999999999999999999999
Q ss_pred HHHHhcCCCCChH
Q psy18159 271 LAQKMNKLTPWNK 283 (294)
Q Consensus 271 lA~~~~~~~~W~~ 283 (294)
.|...+|.+.|..
T Consensus 201 ia~~~~~~~~~~~ 213 (297)
T COG5333 201 IACEVLGMPIIKL 213 (297)
T ss_pred HHHHhcCCccchh
Confidence 9999999888876
No 10
>KOG0835|consensus
Probab=99.77 E-value=3.3e-18 Score=154.63 Aligned_cols=169 Identities=18% Similarity=0.309 Sum_probs=146.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcC
Q psy18159 116 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSH 195 (294)
Q Consensus 116 ~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~ 195 (294)
+-....|..-+.||.+-+.-++|+..+.+++..+|.||+...++-+.++..+++||++||||+||. |-+++|++.+.+.
T Consensus 17 e~e~el~~LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiEE~-Prr~rdVinVFh~ 95 (367)
T KOG0835|consen 17 ETEEELRILGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIEEE-PRRIRDVINVFHY 95 (367)
T ss_pred chHHHHHHHhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhccc-cccHhHHHHHHHH
Confidence 455688999999999999999999999999999999999999999999999999999999999984 5577776654321
Q ss_pred --------C----------c-CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCCh--hHHHHHHHHHHHHhcch
Q psy18159 196 --------T----------Y-SIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQL--PLLTLARYILELSLMEY 254 (294)
Q Consensus 196 --------~----------y-t~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~--~~~~la~~llel~l~d~ 254 (294)
. + .+.++.++|..||+.|||++.+.+|+.++-.|+..++... ++.+.++.+++.++...
T Consensus 96 L~~r~~~~~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~ 175 (367)
T KOG0835|consen 96 LEQRRESEAAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTD 175 (367)
T ss_pred HHHHHhccCcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccc
Confidence 0 1 1567999999999999999999999999999999887654 46899999999999999
Q ss_pred hccCCcHHHHHHHHHHHHHHhcCC-----CCChHHH
Q psy18159 255 SLIRESDSKLACASLYLAQKMNKL-----TPWNKTL 285 (294)
Q Consensus 255 ~~l~~~PS~iAaAal~lA~~~~~~-----~~W~~~L 285 (294)
.|..|+|+.|||||+++|-+.+++ |.|...+
T Consensus 176 v~vry~pe~iACaciyLaAR~~eIpLp~~P~Wf~~F 211 (367)
T KOG0835|consen 176 VFVRYSPESIACACIYLAARNLEIPLPFQPHWFKAF 211 (367)
T ss_pred eeeecCHHHHHHHHHHHHHhhhcCCCCCCccHHHHc
Confidence 999999999999999999887764 3676543
No 11
>KOG0794|consensus
Probab=99.70 E-value=3.2e-17 Score=141.88 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhh--------
Q psy18159 122 RSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYIC-------- 193 (294)
Q Consensus 122 R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~-------- 193 (294)
+--..+.+..+++++++.+.++.+|+.||.||+.+.++..-++.+++.||+++|||+||.-...++-++.-.
T Consensus 41 ~i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~ 120 (264)
T KOG0794|consen 41 KIFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFS 120 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcc
Confidence 344556688899999999999999999999999999999999999999999999999995323344333211
Q ss_pred ----cCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCC-ChhHHHHHHHHHHHHhcchhccCCcHHHHHHHH
Q psy18159 194 ----SHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRI-QLPLLTLARYILELSLMEYSLIRESDSKLACAS 268 (294)
Q Consensus 194 ----~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~-~~~~~~la~~llel~l~d~~~l~~~PS~iAaAa 268 (294)
...|..+.|.+||..+|+.|++-|-+.+|+.-|..+..-.+. +.+..++++.+.+.++.....+-|||..||.||
T Consensus 121 ~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~qd~gi~d~~~l~~~W~ivNDSyr~Dl~Ll~PPh~IalAc 200 (264)
T KOG0794|consen 121 YWPEKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQDMGINDQKLLQLAWSIVNDSYRMDLCLLYPPHQIALAC 200 (264)
T ss_pred cchhhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHHHhcccchhhhhhhHhhhcchhhcceeeecCHHHHHHHH
Confidence 124567899999999999999999999999999999988776 566899999999999999999999999999999
Q ss_pred HHHHHHhcCCC
Q psy18159 269 LYLAQKMNKLT 279 (294)
Q Consensus 269 l~lA~~~~~~~ 279 (294)
+++|+.+.+.+
T Consensus 201 l~Ia~~~~~k~ 211 (264)
T KOG0794|consen 201 LYIACVIDEKD 211 (264)
T ss_pred HHHHHhhcCCC
Confidence 99999988765
No 12
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=99.63 E-value=2.6e-14 Score=132.86 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHH
Q psy18159 123 SVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 202 (294)
Q Consensus 123 ~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i 202 (294)
.....-|.+++..++|+..+...|..++.++.....+.......++++|+|+|||. +..|.+++|+..+++ .++++|
T Consensus 123 ~~a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~-~~~prtl~eI~~~~~--v~~k~i 199 (310)
T PRK00423 123 AFALSELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRR-CKVPRTLDEIAEVSR--VSRKEI 199 (310)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHH-cCCCcCHHHHHHHhC--CCHHHH
Confidence 44556788999999999999999999999999998899999999999999999997 557789999998876 589999
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCCh
Q psy18159 203 KDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWN 282 (294)
Q Consensus 203 ~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~ 282 (294)
-+.++.|++.|++++....|.+|+.+|...++.+..+...|..++..+.......+.+|..|||||||+|.++.|.+.=-
T Consensus 200 ~~~~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g~~~t~ 279 (310)
T PRK00423 200 GRCYRFLLRELNLKLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLGERRTQ 279 (310)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999999999999999999998887666789999999999999999998866433
Q ss_pred HHHHHhcC
Q psy18159 283 KTLEYYSE 290 (294)
Q Consensus 283 ~~L~~~sg 290 (294)
......+|
T Consensus 280 keIa~v~~ 287 (310)
T PRK00423 280 REVAEVAG 287 (310)
T ss_pred HHHHHHcC
Confidence 34444443
No 13
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=99.57 E-value=9.4e-15 Score=108.70 Aligned_cols=88 Identities=30% Similarity=0.447 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHH
Q psy18159 121 MRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 200 (294)
Q Consensus 121 ~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~ 200 (294)
+|...++||.+++..+++++++.++|+.++|||+....+.+.+++++|+||++||+|+++. ++..+++...++.. +.+
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~-~~~ 78 (88)
T cd00043 1 MRPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHVTGYA-TEE 78 (88)
T ss_pred CcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCC-CHH
Confidence 3678999999999999999999999999999999999999999999999999999999998 88999999888654 899
Q ss_pred HHHHHHHHHH
Q psy18159 201 DLKDMEIKLV 210 (294)
Q Consensus 201 ~i~~mE~~IL 210 (294)
+|.++|..|+
T Consensus 79 ~i~~~e~~il 88 (88)
T cd00043 79 EILRMEKLLL 88 (88)
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 14
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=99.50 E-value=2.5e-14 Score=113.29 Aligned_cols=74 Identities=35% Similarity=0.636 Sum_probs=65.7
Q ss_pred CChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHhcCccc
Q psy18159 220 PLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL-TPWNKTLEYYSEEKL 293 (294)
Q Consensus 220 ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~-~~W~~~L~~~sgY~~ 293 (294)
|||++||++|++..+.+..+..+++|++|++++++.|++|+||.|||||+++|+.+++. +.|+..|..+|||+.
T Consensus 1 PTp~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~~~~ 75 (118)
T PF02984_consen 1 PTPYDFLRRFLKISNADQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTGYDK 75 (118)
T ss_dssp --HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHTS-H
T ss_pred CcHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcCCCH
Confidence 89999999998877777789999999999999999999999999999999999999876 699999999999963
No 15
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=99.49 E-value=6.2e-14 Score=103.21 Aligned_cols=83 Identities=25% Similarity=0.407 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHH
Q psy18159 127 DWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDME 206 (294)
Q Consensus 127 dWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE 206 (294)
+||.+++..+++++++.++|+.++||++....+.+..++++|++|++||+|++|.. +...++...++. |+.++|.++|
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~-~~~~~i~~~~ 78 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEIP-PWTKELVHYTGY-FTEEEILRME 78 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCC-CCchhHhHhhCC-CCHHHHHHHH
Confidence 59999999999999999999999999999888888999999999999999999875 567888888776 7999999999
Q ss_pred HHHHH
Q psy18159 207 IKLVT 211 (294)
Q Consensus 207 ~~IL~ 211 (294)
+.|+.
T Consensus 79 ~~il~ 83 (83)
T smart00385 79 KLLLE 83 (83)
T ss_pred HHHhC
Confidence 99873
No 16
>KOG2496|consensus
Probab=99.41 E-value=4.9e-12 Score=113.91 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhc--CCc
Q psy18159 122 RSVLVDWMVEVQETFE--LNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS--HTY 197 (294)
Q Consensus 122 R~~lvdWl~~v~~~~~--l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~--~~y 197 (294)
-..-..-+++.+..|+ |++.+..+|+.+|.||+-..+|.....+.|.+||+|+|||++|.+. ++++|+.-.. ..-
T Consensus 56 ~k~~E~~l~~f~~k~~p~lp~~Vv~TA~~fFkRffL~nsvme~~pk~I~~tc~flA~Kieef~I-SieqFvkn~~~~~~k 134 (325)
T KOG2496|consen 56 TKEEELSLVNFYSKFKPNLPTSVVSTAIEFFKRFFLENSVMEYSPKIIMATCFFLACKIEEFYI-SIEQFVKNMNGRKWK 134 (325)
T ss_pred cHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHhhhHhhee-cHHHHHhhccCcccc
Confidence 3555667777888775 8999999999999999999999999999999999999999999666 8999986544 234
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHc-----C-CChh---HHHHHHHHHHHHhcchhccCCcHHHHHHHH
Q psy18159 198 SIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCN-----R-IQLP---LLTLARYILELSLMEYSLIRESDSKLACAS 268 (294)
Q Consensus 198 t~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~-----~-~~~~---~~~la~~llel~l~d~~~l~~~PS~iAaAa 268 (294)
+.+.|+..|..+++.|+|+|...+|+.=++-|+.-. . .+.+ .+...+.+++-+++...++-|+||.||.||
T Consensus 135 ~~e~vLk~E~~llqsL~f~L~vh~PyRPleGFl~D~kt~l~~~~n~d~~~~~~d~~~fl~~~lltDa~lLytPsQIALaA 214 (325)
T KOG2496|consen 135 THEIVLKYEFLLLQSLKFSLTVHNPYRPLEGFLLDMKTRLPALENPDILRKHDDSKKFLDRALLTDAYLLYTPSQIALAA 214 (325)
T ss_pred cHHHHHhchHHHHHhhhhhheecCCCCchHHHHHHHHHHHHhccCHHHHhhhhhHHHHHHHHHHhccceecChHHHHHHH
Confidence 688999999999999999999999998777765321 1 1111 122334667777777888889999999999
Q ss_pred HHHH
Q psy18159 269 LYLA 272 (294)
Q Consensus 269 l~lA 272 (294)
|.-|
T Consensus 215 il~a 218 (325)
T KOG2496|consen 215 ILHA 218 (325)
T ss_pred HHHH
Confidence 9555
No 17
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=99.26 E-value=3.9e-10 Score=103.19 Aligned_cols=168 Identities=13% Similarity=0.119 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHH
Q psy18159 122 RSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 201 (294)
Q Consensus 122 R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~ 201 (294)
-.....-+-.++..++++..+...|..++-+.+.+.-+.....+-++++|+++||+... .|.++.++....+ .++.+
T Consensus 97 l~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~-~prtl~eIa~a~~--V~~ke 173 (285)
T COG1405 97 LITALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRING-VPRTLDEIAKALG--VSKKE 173 (285)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcC-CCccHHHHHHHHC--CCHHH
Confidence 35667778889999999999999999999999999999999999999999999999755 6778999998877 57899
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCC
Q psy18159 202 LKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPW 281 (294)
Q Consensus 202 i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W 281 (294)
|.++.+.+.+.|+-.+....|.+|+.+|...++.+.++...|..++..+...-...+-.|+.+||||+|+|..+.+...=
T Consensus 174 i~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~as~l~~~~~t 253 (285)
T COG1405 174 IGRTYRLLVRELKLKIPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLASLLLGERRT 253 (285)
T ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhCCchH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999997666
Q ss_pred hHHHHHhcCcc
Q psy18159 282 NKTLEYYSEEK 292 (294)
Q Consensus 282 ~~~L~~~sgY~ 292 (294)
-...+.++|-|
T Consensus 254 q~eva~v~~vt 264 (285)
T COG1405 254 QKEVAKVAGVT 264 (285)
T ss_pred HHHHHHHhCCe
Confidence 66666666644
No 18
>KOG1597|consensus
Probab=99.24 E-value=2.9e-10 Score=102.25 Aligned_cols=164 Identities=11% Similarity=0.129 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHH
Q psy18159 124 VLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLK 203 (294)
Q Consensus 124 ~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~ 203 (294)
..+.-+..+++..+|+...--.|-.+|.++-..+.....+.+-+++||++|||.. +..|.+++++..+++ .+++||-
T Consensus 106 ~a~~~I~~m~d~~~Lp~~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiACRq-~~~pRT~kEI~~~an--v~kKEIg 182 (308)
T KOG1597|consen 106 AAFKEITAMCDRLSLPATIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIACRQ-EDVPRTFKEISAVAN--VSKKEIG 182 (308)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHHHh-cCCCchHHHHHHHHc--CCHHHHH
Confidence 3444577899999999999999999999999888899999999999999999995 447889999999987 6899999
Q ss_pred HHHHHHHHHhCCCCCCCC--hHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCC
Q psy18159 204 DMEIKLVTAIGFDLGIPL--SYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPW 281 (294)
Q Consensus 204 ~mE~~IL~~L~f~l~~pt--p~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W 281 (294)
+.-..|+..|+-++...+ ..+|+.+|+..++.+..+...|.++.+.+..-....+-.|-.||||++|++..+...+.-
T Consensus 183 r~~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L~~~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisqls~~kkt 262 (308)
T KOG1597|consen 183 RCVKLIGEALETSVDLISISTGDFMPRFCSNLGLPKSAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQLSDEKKT 262 (308)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhccCccc
Confidence 999999999998876665 789999999999999999999999999887655556789999999999999998876655
Q ss_pred hHHHHHhcC
Q psy18159 282 NKTLEYYSE 290 (294)
Q Consensus 282 ~~~L~~~sg 290 (294)
-..+...||
T Consensus 263 ~keI~~vtg 271 (308)
T KOG1597|consen 263 QKEIGEVTG 271 (308)
T ss_pred HHHHHHHhh
Confidence 555555554
No 19
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.84 E-value=1.2e-08 Score=74.64 Aligned_cols=68 Identities=35% Similarity=0.575 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCc
Q psy18159 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEE 291 (294)
Q Consensus 224 ~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY 291 (294)
+|+.++....+.+.++..+|.++++.++.++.+..++|+.+|+||+++|.++.+.+.|.+.+..++|+
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~~~~~~~~~~~~~~ 68 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEIPPWTKELVHYTGY 68 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCCchhHhHhhCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999998
No 20
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.78 E-value=4e-08 Score=72.56 Aligned_cols=73 Identities=37% Similarity=0.538 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCc
Q psy18159 219 IPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEE 291 (294)
Q Consensus 219 ~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY 291 (294)
.|++..|+.++....+.+..+..+|.++++.++....+.++.|+.+|+||+++|.++.+.+.|...+..++|+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~~~~~~~~~~~~~~ 74 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEIPPWLKDLVHVTGY 74 (88)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCCCCCHHHHhHHhCC
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999998
No 21
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=98.55 E-value=3.3e-07 Score=76.45 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhh---hc--cccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcC
Q psy18159 124 VLVDWMVEVQETFELNHETLYLAVKLVDLYLG---KV--VCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYS 198 (294)
Q Consensus 124 ~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls---~~--~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt 198 (294)
.+.+|+.++...-+++++++-.|..|+||+.. .. .+...+..-+-++|+.+|+|+-+-...+-+.+..+++ ++
T Consensus 53 ~i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~g--is 130 (149)
T PF08613_consen 53 SIRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGG--IS 130 (149)
T ss_dssp -HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHT--S-
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcC--CC
Confidence 38889999999999999999999999999998 22 2667778889999999999998766667778888875 69
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q psy18159 199 IQDLKDMEIKLVTAIGFDL 217 (294)
Q Consensus 199 ~~~i~~mE~~IL~~L~f~l 217 (294)
.+++-+||+..|..|||+|
T Consensus 131 ~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 131 LKELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHHCCCcC
Confidence 9999999999999999986
No 22
>KOG1598|consensus
Probab=97.90 E-value=4.8e-05 Score=74.05 Aligned_cols=148 Identities=13% Similarity=0.135 Sum_probs=120.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHH
Q psy18159 128 WMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEI 207 (294)
Q Consensus 128 Wl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~ 207 (294)
-|-+++..+++.. .+..|.++|.-.+..+-.+....+.+-.+|++|+|..+-.... +=||..+.. .+.-++-.+=+
T Consensus 73 ~i~~~~~~l~l~~-~~~~a~~~~k~a~~~nftkGr~~~~vvasClY~vcR~e~t~hl-liDfS~~Lq--v~Vy~LG~~~l 148 (521)
T KOG1598|consen 73 LIEELTERLNLGN-KTEVAFNFFKLAPDRNFTKGRRSTEVVAACLYLVCRLEKTDHL-LIDFSSYLQ--VSVYDLGSNFL 148 (521)
T ss_pred HHHHHHHhcCcch-HHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhhCCceE-EEEeccceE--EehhhhhHHHH
Confidence 5778999999999 9999999999999999999999999999999999997554333 334443322 34556666777
Q ss_pred HHHHHhCCC---CCCCChHHHHHHHHHHcC---CChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCC
Q psy18159 208 KLVTAIGFD---LGIPLSYRFLRRYARCNR---IQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLT 279 (294)
Q Consensus 208 ~IL~~L~f~---l~~ptp~~Fl~~~~~~~~---~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~ 279 (294)
.+...|.-+ +....|.-|+.+|...+. -+.++...|..++..+..|+-..+-+|+-|+-|||++|.+++|.+
T Consensus 149 ~l~~~L~i~en~~plvDpsL~i~Rfa~~L~~g~~~~~Vv~~a~~L~~rMkrdwm~tGRRPsglcGAaLliAar~h~~~ 226 (521)
T KOG1598|consen 149 EVTDSLSIGENVSPLVDPSLYIVRFSCRLLFGDKTEDVAKTATRLAQRMKRDWMQTGRRPSGLCGAALLIAARMHGFR 226 (521)
T ss_pred HHHHHhccccccccccCcceeeechhHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHHcCcc
Confidence 778888877 667778888888887543 235677888899999999999999999999999999999999865
No 23
>KOG4164|consensus
Probab=97.73 E-value=2.5e-05 Score=73.19 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcC--CcCHHH
Q psy18159 124 VLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSH--TYSIQD 201 (294)
Q Consensus 124 ~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~--~yt~~~ 201 (294)
.+=.=|.++....++..-|+..|-.||....-+..+.+.+-+|.|-||+++|+|+.+..-..++.++.-... .+.+.+
T Consensus 384 SlKREMr~l~~d~~id~~TVa~AyVYFEKliLkglisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~nrrd 463 (497)
T KOG4164|consen 384 SLKREMRELGEDCGIDVVTVAMAYVYFEKLILKGLISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRLNRRD 463 (497)
T ss_pred HHHHHHHHhhhccCccceeehhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccHHh
Confidence 445557788888999999999999999999999999999999999999999999999877778888765544 356899
Q ss_pred HHHHHHHHHHHhCCCCCCC
Q psy18159 202 LKDMEIKLVTAIGFDLGIP 220 (294)
Q Consensus 202 i~~mE~~IL~~L~f~l~~p 220 (294)
++..|.-||-+|.|.|..|
T Consensus 464 Lia~Ef~VlvaLefaL~~~ 482 (497)
T KOG4164|consen 464 LIAFEFPVLVALEFALHLP 482 (497)
T ss_pred hhhhhhhHHHhhhhhccCC
Confidence 9999999999999999865
No 24
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=97.17 E-value=0.0011 Score=47.92 Aligned_cols=65 Identities=9% Similarity=0.188 Sum_probs=54.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhc
Q psy18159 129 MVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS 194 (294)
Q Consensus 129 l~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~ 194 (294)
|-++|..++|+..+.-.|..++++-....-.......-++++|+++||+.. ..+.++.++...++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~-~~~~t~~eIa~~~~ 65 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLN-GVPRTLKEIAEAAG 65 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHT-TSSSSHHHHHHHCT
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHc-CCCcCHHHHHHHhC
Confidence 457899999999999999999999988888888999999999999999975 46668888877665
No 25
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=97.11 E-value=0.0041 Score=44.89 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=52.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcC
Q psy18159 226 LRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSE 290 (294)
Q Consensus 226 l~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sg 290 (294)
+.+|...++.+..+.+.|..+...+......-+-+|..+||||+|+|.+..+.+.=-..+...+|
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~~~t~~eIa~~~~ 65 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNGVPRTLKEIAEAAG 65 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTSSSSHHHHHHHCT
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHhC
Confidence 46788889999999999999999998887778999999999999999999987765566655554
No 26
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=96.11 E-value=0.035 Score=51.76 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHH
Q psy18159 125 LVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKD 204 (294)
Q Consensus 125 lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~ 204 (294)
..++|..+|..++|+.++...|..++.+.....-....+..-+++||+++||+... .+.+.+++..+++ .+...|.+
T Consensus 219 p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g-~~~t~keIa~v~~--Vs~~tI~~ 295 (310)
T PRK00423 219 PIDYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLG-ERRTQREVAEVAG--VTEVTVRN 295 (310)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHcC--CCHHHHHH
Confidence 35889999999999999999999999988877667889999999999999999765 5668999888775 57888888
Q ss_pred HHHHHHHHhCCCC
Q psy18159 205 MEIKLVTAIGFDL 217 (294)
Q Consensus 205 mE~~IL~~L~f~l 217 (294)
.=+.|.+.|+..+
T Consensus 296 ~ykel~~~l~~~~ 308 (310)
T PRK00423 296 RYKELAEKLDIKI 308 (310)
T ss_pred HHHHHHHHhCccc
Confidence 8888888887644
No 27
>KOG1674|consensus
Probab=95.25 E-value=0.052 Score=48.14 Aligned_cols=95 Identities=21% Similarity=0.277 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhcc---------ccccc-hhhhhhhhhhhhccCCCCCCCChhhHHhhh
Q psy18159 124 VLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVV---------CSRLN-LQLLGATAIFVSSKFDDRIPPQLSDLEYIC 193 (294)
Q Consensus 124 ~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~---------v~~~~-lqLvg~acL~IAsK~eE~~~~~i~dl~~i~ 193 (294)
.+-+++.++...-+.+++++-.|..|||||..+.+ +.--+ ..=.-++|+.+|+|+.+...-.-.-+..+
T Consensus 77 si~~yleri~k~~~~s~~~lv~al~Yldr~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~v- 155 (218)
T KOG1674|consen 77 SIRQYLERIFKYSKCSPECLVLALVYLDRFVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKV- 155 (218)
T ss_pred chHHHHHHHHHHhcCCchhhhhhhhhhhhhhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHh-
Confidence 44566777888889999999999999999999722 22223 44467899999999986543222222333
Q ss_pred cCCcCHHHHHHHHHHHHHHhCCCCCCC
Q psy18159 194 SHTYSIQDLKDMEIKLVTAIGFDLGIP 220 (294)
Q Consensus 194 ~~~yt~~~i~~mE~~IL~~L~f~l~~p 220 (294)
++.+.+++-.+|...|..++|++..+
T Consensus 156 -ggl~~~eln~lE~~~l~~~~~~l~i~ 181 (218)
T KOG1674|consen 156 -GGLTTDELNKLELDLLFLLDFRLIIS 181 (218)
T ss_pred -CCCChHhhhhhhHHHHhhCCeEEEec
Confidence 34688999999999999999999875
No 28
>KOG1675|consensus
Probab=94.40 E-value=0.071 Score=49.05 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=65.5
Q ss_pred CCChhHHHHHHHHHHHHhhhcccc--ccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhC
Q psy18159 137 ELNHETLYLAVKLVDLYLGKVVCS--RLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIG 214 (294)
Q Consensus 137 ~l~~eTl~lAv~ilDRfls~~~v~--~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~ 214 (294)
.|.-+.--....+++|-+.-..+. ..+...++..+.++|+|+.....-.=-|.+.++.+ .|.+++-+||+.+|..|+
T Consensus 205 qlta~~aiitL~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd-~tveDmNe~ERqfLelLq 283 (343)
T KOG1675|consen 205 QLTAECDIITLVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKD-QSVDDMNALERQFLELLQ 283 (343)
T ss_pred hhhhccchHHHHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhh-ccHhhHHHHHHHHHHHHh
Confidence 333333344456778877655544 67777777778999999987554444567777765 389999999999999999
Q ss_pred CCCCCCChHHHHHHHH
Q psy18159 215 FDLGIPLSYRFLRRYA 230 (294)
Q Consensus 215 f~l~~ptp~~Fl~~~~ 230 (294)
|+++.|... |-..|.
T Consensus 284 fNinvp~sv-YAKyYf 298 (343)
T KOG1675|consen 284 FNINVPSSE-YAKYYF 298 (343)
T ss_pred hccCccHHH-HHHHHH
Confidence 999998653 444443
No 29
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=93.05 E-value=0.56 Score=36.91 Aligned_cols=69 Identities=23% Similarity=0.263 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHhcCc
Q psy18159 223 YRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL-TPWNKTLEYYSEE 291 (294)
Q Consensus 223 ~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~-~~W~~~L~~~sgY 291 (294)
.+|+.......+.+......|-.+++.-+.........+..+|+||+++|.++.+. +.+...+..++++
T Consensus 35 ~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~ 104 (127)
T PF00134_consen 35 IDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPVNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDN 104 (127)
T ss_dssp HHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTT
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcC
Confidence 45666677777888888889999999988888888899999999999999998875 5667777766643
No 30
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=91.01 E-value=0.6 Score=36.05 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHH
Q psy18159 126 VDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDM 205 (294)
Q Consensus 126 vdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~m 205 (294)
.+||.......+...++.++|-.+++..+....+-.-..-.+|++|+++|.+.-...++--..+..++ +++.+++...
T Consensus 4 ~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t--~~~~~~l~~c 81 (118)
T PF02984_consen 4 YDFLRRFLKISNADQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGKEPPWPESLEKLT--GYDKEDLKEC 81 (118)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHH--TS-HHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCccccCCccchhhc--CCCHHHHHHH
Confidence 46666664444456678889999999888877788888899999999999998553233334455555 4578887776
Q ss_pred HHHHHHHhC
Q psy18159 206 EIKLVTAIG 214 (294)
Q Consensus 206 E~~IL~~L~ 214 (294)
=..|.+.+.
T Consensus 82 ~~~i~~~~~ 90 (118)
T PF02984_consen 82 IELIQELLS 90 (118)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 31
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=89.31 E-value=1.9 Score=39.83 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHH
Q psy18159 123 SVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 202 (294)
Q Consensus 123 ~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i 202 (294)
..-.+++-.++..++|+.++--.|..+++..............-+|++|+++||+... .+.+-++...+++- |...|
T Consensus 192 ~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~as~l~~-~~~tq~eva~v~~v--tevTI 268 (285)
T COG1405 192 VDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLASLLLG-ERRTQKEVAKVAGV--TEVTI 268 (285)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhC-CchHHHHHHHHhCC--eeeHH
Confidence 3456788899999999999999999999999998888899999999999999999866 44466666666553 33334
Q ss_pred HHHHHHHHHHhC
Q psy18159 203 KDMEIKLVTAIG 214 (294)
Q Consensus 203 ~~mE~~IL~~L~ 214 (294)
.+-=.++...++
T Consensus 269 rnrykel~~~~~ 280 (285)
T COG1405 269 RNRYKELADALD 280 (285)
T ss_pred HHHHHHHHHhhc
Confidence 443344444443
No 32
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=83.64 E-value=10 Score=28.20 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHcCCCh----hHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcC--CCCChHHHHHhcC
Q psy18159 222 SYRFLRRYARCNRIQL----PLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNK--LTPWNKTLEYYSE 290 (294)
Q Consensus 222 p~~Fl~~~~~~~~~~~----~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~--~~~W~~~L~~~sg 290 (294)
..+|+--.+.+++..+ +..+++.--+..++......-.+|..|.|+.+....+.-+ ...|+-+|+..+.
T Consensus 4 ~tdflip~c~alkipe~~wpql~e~~s~tickaliqpniall~p~licaggllttiet~ntn~~~wt~yledl~~ 78 (106)
T PF09241_consen 4 STDFLIPVCHALKIPEDFWPQLFEATSITICKALIQPNIALLPPCLICAGGLLTTIETDNTNCQPWTCYLEDLSC 78 (106)
T ss_dssp GGGGHHHHHHHTT--GGGHHHHHHHHHHHHHHHTTSGGGGGS-HHHHHHHHHHHHHHTS-TSSSTCHHHHHHHHH
T ss_pred hhhhHHHhhhhccCcHHHhHHHHHHHHHHHHHHHcCCCccccCcceeecccceEEEeccCCCCcchhhhHHhhHH
Confidence 3467888888887765 4567777777778888988889999999999999988765 4599999988763
No 33
>KOG0834|consensus
Probab=81.61 E-value=3.8 Score=38.50 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy18159 223 YRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLE 286 (294)
Q Consensus 223 ~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~ 286 (294)
..||......++........|..+.+.-.+-+.|-.|.|-.+|+|||+||-+.-+.+.+.....
T Consensus 43 ~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvEetp~kl~dIi 106 (323)
T KOG0834|consen 43 AKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVEETPRKLEDII 106 (323)
T ss_pred HHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhcccCcccHHHHH
Confidence 3566667777777777777777778888888889999999999999999999988776665544
No 34
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=81.52 E-value=4.2 Score=37.94 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=42.1
Q ss_pred HHHHHHHHcC--CChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCC
Q psy18159 225 FLRRYARCNR--IQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLT 279 (294)
Q Consensus 225 Fl~~~~~~~~--~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~ 279 (294)
++..+....+ ....+...|..++..-.....+..|.|-.||++|++||.++-+.+
T Consensus 62 ~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvEE~~ 118 (305)
T TIGR00569 62 RLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEEFN 118 (305)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhccccC
Confidence 4444555566 667777777777777777777888999999999999999987643
No 35
>KOG1597|consensus
Probab=67.15 E-value=16 Score=33.75 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhc
Q psy18159 125 LVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS 194 (294)
Q Consensus 125 lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~ 194 (294)
.-|+|..+|..|+|+..+.-.|-.+-..+--..-+.+...--|+++++++++-..+ .+.+.+++..+++
T Consensus 203 t~~~m~RFCs~L~L~~~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisqls~-~kkt~keI~~vtg 271 (308)
T KOG1597|consen 203 TGDFMPRFCSNLGLPKSAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQLSD-EKKTQKEIGEVTG 271 (308)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhcc-CcccHHHHHHHhh
Confidence 56778889999999999988888888887776667778888899999999999877 5556777776654
No 36
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and SV40 large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion (see IPR002720 from INTERPRO) appears to be required for the stable folding of the B box. Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the B-box is on C-terminal side of the A-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1GUX_B 3POM_A 1GH6_B 1N4M_A 1O9K_H 4ELL_B 2R7G_C 4ELJ_A.
Probab=66.13 E-value=16 Score=29.80 Aligned_cols=68 Identities=12% Similarity=0.039 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhcc--ccccchhhhhhhhhhhhccCCCCCCCChhhHHhhh
Q psy18159 125 LVDWMVEVQETFELNHETLYLAVKLVDLYLGKVV--CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYIC 193 (294)
Q Consensus 125 lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~--v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~ 193 (294)
...-|.++|.+++++++.....-.+|+..+.... +...++--+-++|+++-||+.. ..++.+++...-
T Consensus 14 a~~Rl~~LC~~L~l~~~~~~~iwt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~-~~~sF~~Ii~~Y 83 (135)
T PF01857_consen 14 AAVRLQDLCERLDLSSDLREKIWTCFEHSLTHHTELMKDRHLDQIILCAIYGICKVSK-EELSFKDIIKAY 83 (135)
T ss_dssp HHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHSGGGGTTS-HHHHHHHHHHHHHHHTT--S--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhhc-CCCCHHHHHHHH
Confidence 4456788999999999988888999999987654 6677788888999999999876 455677776543
No 37
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=63.01 E-value=57 Score=26.75 Aligned_cols=76 Identities=22% Similarity=0.082 Sum_probs=49.7
Q ss_pred CCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhc---ch--hccCCcHHHHHHHHHHHHHHhc-CCCCChHHHHHhcCc
Q psy18159 218 GIPLSYRFLRRYARCNRIQLPLLTLARYILELSLM---EY--SLIRESDSKLACASLYLAQKMN-KLTPWNKTLEYYSEE 291 (294)
Q Consensus 218 ~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~---d~--~~l~~~PS~iAaAal~lA~~~~-~~~~W~~~L~~~sgY 291 (294)
...+..+|+.++.+....+....-+|-.+++.... .. ..-...+.-+-++|+.+|.+++ +...|+......+|.
T Consensus 50 p~i~i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gi 129 (149)
T PF08613_consen 50 PSISIRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGI 129 (149)
T ss_dssp -SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCC
Confidence 33456789999999988888888777766666555 12 2234566788888899998866 556888888888887
Q ss_pred cc
Q psy18159 292 KL 293 (294)
Q Consensus 292 ~~ 293 (294)
++
T Consensus 130 s~ 131 (149)
T PF08613_consen 130 SL 131 (149)
T ss_dssp -H
T ss_pred CH
Confidence 63
No 38
>KOG0835|consensus
Probab=54.06 E-value=53 Score=30.98 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=44.4
Q ss_pred HcCCChhH--HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHH
Q psy18159 135 TFELNHET--LYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDM 205 (294)
Q Consensus 135 ~~~l~~eT--l~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~m 205 (294)
.+++++.- +..|-+++---+......+.....||++|+++|+...|+--|.-..+..+.+ .++.+|-..
T Consensus 151 tL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyLaAR~~eIpLp~~P~Wf~~Fd--~~k~eid~i 221 (367)
T KOG0835|consen 151 TLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYLAARNLEIPLPFQPHWFKAFD--TTKREIDEI 221 (367)
T ss_pred HhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHHHHhhhcCCCCCCccHHHHcC--CcHHHHHHH
Confidence 44554443 5556666655555556777888999999999999999954444444444443 355555443
No 39
>KOG0794|consensus
Probab=51.58 E-value=35 Score=30.62 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCC
Q psy18159 225 FLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLT 279 (294)
Q Consensus 225 Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~ 279 (294)
++..+....+....+...|.-.+..-+....+-++.|-.+|..|++||++.-..|
T Consensus 47 ~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAcKvEE~~ 101 (264)
T KOG0794|consen 47 VIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLACKVEECP 101 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhhcc
Confidence 3334444444445555555444444455555778889999999999999976544
No 40
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=44.09 E-value=27 Score=32.37 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcC
Q psy18159 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNK 277 (294)
Q Consensus 224 ~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~ 277 (294)
.|+..+...++....+...|..+...-..-...-.+.+-.||++||+||.+..+
T Consensus 50 k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed 103 (297)
T COG5333 50 KLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVED 103 (297)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeeccc
Confidence 567777778888888888888877777776778899999999999999999776
No 41
>KOG0656|consensus
Probab=43.76 E-value=1e+02 Score=29.13 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCc---HHHHHHHHHHHHHHhcCC--CCChHHHHHhcCc
Q psy18159 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRES---DSKLACASLYLAQKMNKL--TPWNKTLEYYSEE 291 (294)
Q Consensus 224 ~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~---PS~iAaAal~lA~~~~~~--~~W~~~L~~~sgY 291 (294)
+|+-......+......-+|--+++.-+.-+.+-..+ --.+|+|||.||-++-.. |.-.+....|+.|
T Consensus 83 ~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~ 155 (335)
T KOG0656|consen 83 DWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDN 155 (335)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccc
Confidence 4444455545555556666666666666666666666 568999999999998764 3333334444444
No 42
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=27.93 E-value=2.4e+02 Score=20.51 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=39.9
Q ss_pred CcchhhhHHHHHHH------HHHHHhhCCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy18159 79 PLQVSCYAMHIFEY------LKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDL 152 (294)
Q Consensus 79 p~~~~eY~~dI~~~------l~~~E~~~~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDR 152 (294)
|..|.|...|-+.= .+.+|..+.. ..-.... ..-+..-|..+++++..++..-+++.+ .|+.++|.
T Consensus 8 ~~TV~dlw~Ew~~g~~g~psI~~le~~yG~-~WR~~~~----~~~~y~rRK~Ii~~I~~l~~~~g~~~~---~ai~~le~ 79 (81)
T PF12550_consen 8 IKTVYDLWREWFTGLNGQPSIRSLEKKYGS-KWRRDSK----ERRTYSRRKVIIDFIERLANERGISEE---EAIEILEE 79 (81)
T ss_pred CCcHHHHHHHHhcCCCCCCCHHHHHHHhCh-hhccCcc----cchhHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHHh
Confidence 44444444444443 5666776642 1211111 124457799999999999888777554 46788776
Q ss_pred H
Q psy18159 153 Y 153 (294)
Q Consensus 153 f 153 (294)
+
T Consensus 80 ~ 80 (81)
T PF12550_consen 80 I 80 (81)
T ss_pred c
Confidence 4
No 43
>PF14376 Haem_bd: Haem-binding domain
Probab=25.33 E-value=55 Score=26.64 Aligned_cols=30 Identities=20% Similarity=0.488 Sum_probs=25.2
Q ss_pred hCCCCCccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy18159 99 EFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVE 131 (294)
Q Consensus 99 ~~~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~ 131 (294)
.+|.+.|+--++ +..++.+.|..|++|+-+
T Consensus 106 ~MP~~~Y~~~H~---~a~Ls~~ek~~Ll~Wi~~ 135 (137)
T PF14376_consen 106 EMPPPSYTLLHW---EAKLSEEEKQALLNWIKE 135 (137)
T ss_pred CCChHHHhhhCC---CCCCCHHHHHHHHHHHHH
Confidence 468888988877 457999999999999865
No 44
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=22.53 E-value=54 Score=28.10 Aligned_cols=39 Identities=13% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCC
Q psy18159 234 RIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLT 279 (294)
Q Consensus 234 ~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~ 279 (294)
++..++...|-|.+ .--.|+.|..||+||+|-+.+-|..
T Consensus 114 gvp~evye~aDynl-------gvg~qpHSvrAAlAI~LDRL~~g~e 152 (176)
T PRK03958 114 KVPREVYELADWNV-------AVGNQPHSEVAALAVFLDRLFEGKE 152 (176)
T ss_pred CCCHHHHhhCCEEe-------ccCCCChHHHHHHHHHHHHhcCCcc
Confidence 34556666665544 3346888999999999999887643
No 45
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=22.19 E-value=93 Score=22.51 Aligned_cols=42 Identities=10% Similarity=0.213 Sum_probs=27.3
Q ss_pred hhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHH
Q psy18159 164 LQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDME 206 (294)
Q Consensus 164 lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE 206 (294)
-.|+-.+|-.||.++....+-.++.+..+.++ ++.++-.+++
T Consensus 29 ~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d-~t~eee~~i~ 70 (78)
T PF01466_consen 29 KGLLDLCCKYIANMIKGKSPEEIRKYFGIEND-LTPEEEEEIR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHT---T-SSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCC-CCHHHHHHHH
Confidence 35677889999999987766667777777664 7776654443
No 46
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=21.93 E-value=1.5e+02 Score=18.91 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHH------HHHHHHHcCCChhHHHHHH
Q psy18159 116 NINAEMRSVLVDW------MVEVQETFELNHETLYLAV 147 (294)
Q Consensus 116 ~i~~~~R~~lvdW------l~~v~~~~~l~~eTl~lAv 147 (294)
.+++..|..+..| +.+++..++.++.|++.-+
T Consensus 4 ~Lt~~eR~~I~~l~~~G~s~~~IA~~lg~s~sTV~rel 41 (44)
T PF13936_consen 4 HLTPEERNQIEALLEQGMSIREIAKRLGRSRSTVSREL 41 (44)
T ss_dssp --------HHHHHHCS---HHHHHHHTT--HHHHHHHH
T ss_pred chhhhHHHHHHHHHHcCCCHHHHHHHHCcCcHHHHHHH
Confidence 6888888888887 5678999999999986543
Done!