Query psy18159
Match_columns 294
No_of_seqs 234 out of 1708
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:05:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 3.3E-50 1.1E-54 363.3 21.0 208 81-293 2-212 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 2E-50 6.9E-55 366.4 18.6 208 80-293 1-209 (269)
3 2f2c_A Cyclin homolog, V-cycli 100.0 5.8E-49 2E-53 354.0 21.6 213 73-293 9-232 (254)
4 1g3n_C V-cyclin; cyclin-depend 100.0 3.8E-49 1.3E-53 355.7 18.1 212 74-293 9-232 (257)
5 3g33_B CCND3 protein; Ser/Thr 100.0 5.3E-47 1.8E-51 349.8 21.3 211 76-293 30-251 (306)
6 1f5q_B Gamma herpesvirus cycli 100.0 3.2E-47 1.1E-51 342.1 17.3 207 74-293 12-226 (252)
7 1w98_B Cyclin E, G1/S-specific 100.0 5.4E-46 1.8E-50 339.7 21.3 206 76-293 8-226 (283)
8 2w96_A G1/S-specific cyclin-D1 100.0 5.1E-45 1.7E-49 331.2 19.0 211 75-293 16-241 (271)
9 2i53_A Cyclin K; cell cycle, t 100.0 4.8E-36 1.6E-40 269.8 11.8 167 116-283 35-218 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 5E-35 1.7E-39 263.2 17.5 174 116-292 25-223 (257)
11 1zp2_A RNA polymerase II holoe 100.0 1.9E-33 6.3E-38 250.0 18.4 167 117-285 24-199 (235)
12 3rgf_B Cyclin-C; protein kinas 100.0 1.1E-33 3.8E-38 258.4 16.4 168 118-285 39-222 (285)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 9.1E-34 3.1E-38 266.5 9.5 169 116-285 32-225 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 5.5E-32 1.9E-36 251.2 16.4 174 119-293 54-245 (323)
15 1c9b_A General transcription f 100.0 4.5E-28 1.6E-32 211.1 20.4 170 120-292 3-172 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 5.9E-24 2E-28 184.0 18.1 170 120-292 7-178 (200)
17 3k7a_M Transcription initiatio 99.8 2.8E-20 9.6E-25 173.9 8.4 167 123-292 127-305 (345)
18 4bbr_M Transcription initiatio 99.5 4.4E-14 1.5E-18 131.8 7.8 154 123-279 127-292 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.3 3.1E-06 1.1E-10 76.3 9.9 106 124-232 76-184 (293)
20 1ais_B TFB TFIIB, protein (tra 97.2 0.0014 4.8E-08 55.5 9.3 89 127-218 110-198 (200)
21 1c9b_A General transcription f 95.8 0.041 1.4E-06 46.6 9.0 71 222-292 8-78 (207)
22 1zp2_A RNA polymerase II holoe 92.4 0.54 1.9E-05 40.4 8.8 67 223-289 32-99 (235)
23 4bbr_M Transcription initiatio 91.3 0.93 3.2E-05 41.6 9.5 73 219-291 126-198 (345)
24 2ivx_A Cyclin-T2; transcriptio 90.4 1.2 4E-05 38.7 8.9 65 222-286 34-98 (257)
25 2i53_A Cyclin K; cell cycle, t 89.2 1.7 5.7E-05 37.7 8.9 64 223-286 45-108 (258)
26 3h4c_A Transcription factor TF 89.0 8.3 0.00028 32.7 12.3 148 124-275 14-170 (260)
27 3rgf_B Cyclin-C; protein kinas 88.7 1 3.6E-05 39.9 7.3 58 223-280 47-104 (285)
28 2pk2_A Cyclin-T1, protein TAT; 87.8 1.3 4.5E-05 40.7 7.6 65 222-286 41-105 (358)
29 1jkw_A Cyclin H; cell cycle, c 87.6 1.6 5.3E-05 39.6 7.9 57 224-280 62-120 (323)
30 2f2c_A Cyclin homolog, V-cycli 87.4 2.5 8.6E-05 36.6 8.8 85 127-213 154-246 (254)
31 1g3n_C V-cyclin; cyclin-depend 86.5 3.2 0.00011 36.0 9.0 86 126-213 152-246 (257)
32 3k7a_M Transcription initiatio 86.1 0.4 1.4E-05 44.0 3.0 71 222-292 129-199 (345)
33 2w96_A G1/S-specific cyclin-D1 86.0 3.4 0.00012 36.1 9.0 67 224-290 62-129 (271)
34 2b9r_A Human cyclin B1; cell c 85.8 3.4 0.00012 36.1 8.9 68 223-290 42-110 (269)
35 2cch_B Cyclin A2, cyclin-A; co 82.4 3.5 0.00012 35.8 7.4 67 224-290 44-111 (260)
36 3m03_A ORC6, origin recognitio 82.3 10 0.00034 28.1 8.7 78 129-211 6-89 (95)
37 3g33_B CCND3 protein; Ser/Thr 73.8 11 0.00039 33.5 8.2 68 224-291 76-144 (306)
38 1w98_B Cyclin E, G1/S-specific 73.5 11 0.00038 33.1 8.0 67 224-290 55-123 (283)
39 1f5q_B Gamma herpesvirus cycli 65.3 23 0.00078 30.6 8.1 69 224-292 54-123 (252)
40 2pmi_B PHO85 cyclin PHO80, ami 64.2 37 0.0013 30.2 9.3 74 220-293 75-152 (293)
41 2qdj_A Retinoblastoma-associat 51.8 19 0.00065 32.3 5.2 65 129-194 6-74 (304)
42 2wh0_Q Pkcev3, protein kinase 34.9 31 0.0011 19.2 2.4 18 199-216 12-29 (31)
43 2p1m_A SKP1-like protein 1A; F 32.6 33 0.0011 27.3 3.3 38 164-202 111-148 (160)
44 3v7d_A Suppressor of kinetocho 30.9 28 0.00097 28.1 2.7 55 137-203 100-157 (169)
45 2ast_A S-phase kinase-associat 30.4 35 0.0012 27.0 3.1 54 137-202 93-149 (159)
46 2ou1_A Apolipoprotein A-II; hi 22.1 33 0.0011 23.7 1.3 43 81-128 17-60 (77)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=3.3e-50 Score=363.29 Aligned_cols=208 Identities=32% Similarity=0.509 Sum_probs=200.1
Q ss_pred chhhhHHHHHHHHHHHHhhC-CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccc
Q psy18159 81 QVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVC 159 (294)
Q Consensus 81 ~~~eY~~dI~~~l~~~E~~~-~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v 159 (294)
.|+||++|||+||+++|.++ |.++|+..|+ ++++.||.+++|||++++..|+++++|+++|++|+|||+++.++
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~-----~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v 76 (260)
T 2cch_B 2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQP-----DITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV 76 (260)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCCCTTGGGGCS-----SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred chHhHHHHHHHHHHHHHhhcCCCchhhhcCC-----CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC
Confidence 36799999999999999986 6689999998 99999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCCh-h
Q psy18159 160 SRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQL-P 238 (294)
Q Consensus 160 ~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~-~ 238 (294)
.+.++|++|+||||||||+||..||+++|+++++++.|++++|.+||+.||++|+|+++.|||++|+++|++..+.+. +
T Consensus 77 ~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~ 156 (260)
T 2cch_B 77 LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK 156 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHH
T ss_pred CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988765 7
Q ss_pred HHHHHHHHHHHHhcchh-ccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCccc
Q psy18159 239 LLTLARYILELSLMEYS-LIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKL 293 (294)
Q Consensus 239 ~~~la~~llel~l~d~~-~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY~~ 293 (294)
+..+|++++++++.|+. +++|+||.|||||+++|+.+++.+.|.+.|+++|||+.
T Consensus 157 ~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~ 212 (260)
T 2cch_B 157 VESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTL 212 (260)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCH
Confidence 89999999999999999 99999999999999999999988999999999999974
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2e-50 Score=366.42 Aligned_cols=208 Identities=32% Similarity=0.638 Sum_probs=196.3
Q ss_pred cchhhhHHHHHHHHHHHHhhC-CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhcc
Q psy18159 80 LQVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVV 158 (294)
Q Consensus 80 ~~~~eY~~dI~~~l~~~E~~~-~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~ 158 (294)
++|+||++|||+||++.|..+ +.++|+++| ++++.||.+++|||.++|.+|+++++|+++|++|+|||+++.+
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~q------~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~ 74 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLGR------EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS 74 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSSS------SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccCC------CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 468899999999999999987 678999875 6999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCChh
Q psy18159 159 CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLP 238 (294)
Q Consensus 159 v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~~ 238 (294)
+.+.++|++|+||||||||+||..||+++|+++++++.|++++|.+||+.||++|+|+++.|||++|+++|++..+.+.+
T Consensus 75 v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~ 154 (269)
T 2b9r_A 75 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVE 154 (269)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHH
T ss_pred CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCccc
Q psy18159 239 LLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKL 293 (294)
Q Consensus 239 ~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY~~ 293 (294)
...+|++++++++.++.+++|+||.|||||+++|+.++|.+.|.+.|+++|||+.
T Consensus 155 ~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~ 209 (269)
T 2b9r_A 155 QHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTE 209 (269)
T ss_dssp HHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCS
T ss_pred HHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999998999999999999985
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=5.8e-49 Score=353.95 Aligned_cols=213 Identities=20% Similarity=0.294 Sum_probs=195.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhhC-CCCCccC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q psy18159 73 KETWEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLP-FQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLV 150 (294)
Q Consensus 73 ~~~~~~p~~~~eY~~dI~~~l~~~E~~~-~~~~yl~-~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~il 150 (294)
..+..||.+++| +|||+ |++.|.++ |.++|+. .|+ ++++.||.+++|||++++.+|+++++|+++||+|+
T Consensus 9 ~~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~-----~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~ 80 (254)
T 2f2c_A 9 NRAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQT-----EVTVDNRTILLTWMHLLCESFELDKSVFPLSVSIL 80 (254)
T ss_dssp CBCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCS-----SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred CCCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCc-----cCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 356789999998 99999 99999887 6789996 677 99999999999999999999999999999999999
Q ss_pred HHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHH
Q psy18159 151 DLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYA 230 (294)
Q Consensus 151 DRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~ 230 (294)
|||+++..+.+.++||+|+||||||||+||..||+++++++++++.|++++|.+||+.||++|+|+++.|||++|+++|+
T Consensus 81 DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~ 160 (254)
T 2f2c_A 81 DRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLC 160 (254)
T ss_dssp HHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHH
T ss_pred HHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChh----HHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCC--CC---hHHHHHhcCccc
Q psy18159 231 RCNRIQLP----LLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLT--PW---NKTLEYYSEEKL 293 (294)
Q Consensus 231 ~~~~~~~~----~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~--~W---~~~L~~~sgY~~ 293 (294)
+..+.+.+ ++..|++++++++.|+.|++|+||.|||||+++|+.+.+.. .| .+.|+++|||+.
T Consensus 161 ~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~ 232 (254)
T 2f2c_A 161 NALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFST 232 (254)
T ss_dssp HHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCH
T ss_pred HHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCH
Confidence 99887654 35689999999999999999999999999999999987433 36 899999999973
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.8e-49 Score=355.74 Aligned_cols=212 Identities=19% Similarity=0.194 Sum_probs=192.8
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhhC-CCCCccC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q psy18159 74 ETWEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLP-FQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVD 151 (294)
Q Consensus 74 ~~~~~p~~~~eY~~dI~~~l~~~E~~~-~~~~yl~-~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilD 151 (294)
.+..||.++.| +||| +|++.|.++ |.++|+. .|+ ++++.||.++||||+++|.+|+++++|+++||+|+|
T Consensus 9 ~~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~-----~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~D 80 (257)
T 1g3n_C 9 SGLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQ-----SLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLD 80 (257)
T ss_dssp -------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTS-----SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCc-----cCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34679999988 9999 999999887 6679985 687 999999999999999999999999999999999999
Q ss_pred HHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH
Q psy18159 152 LYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 231 (294)
Q Consensus 152 Rfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~ 231 (294)
||+++..+.+.++||+|+||||||||+||..||+++++++++++.|++++|.+||+.||++|+|+++.|||++|+++|++
T Consensus 81 Rfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~ 160 (257)
T 1g3n_C 81 RLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLL 160 (257)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChh----HHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC------CCChHHHHHhcCccc
Q psy18159 232 CNRIQLP----LLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL------TPWNKTLEYYSEEKL 293 (294)
Q Consensus 232 ~~~~~~~----~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~------~~W~~~L~~~sgY~~ 293 (294)
..+.+.+ +...|++++++++.|+.|++|+||.|||||+++|+.+++. +.|.+.|.++|||+.
T Consensus 161 ~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~ 232 (257)
T 1g3n_C 161 KLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDV 232 (257)
T ss_dssp HHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCH
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCH
Confidence 8876543 3678999999999999999999999999999999998874 479999999999974
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-47 Score=349.85 Aligned_cols=211 Identities=24% Similarity=0.314 Sum_probs=190.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhhC-CCCCccCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q psy18159 76 WEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLPF-QSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLY 153 (294)
Q Consensus 76 ~~~p~~~~eY~~dI~~~l~~~E~~~-~~~~yl~~-q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRf 153 (294)
..||.++ |.+|||++|++.|.++ |.++|+.+ |+ +|++.||.+++|||++||..|+++++|+++||+|+|||
T Consensus 30 ~~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~-----~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRf 102 (306)
T 3g33_B 30 GPDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQR-----EIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRY 102 (306)
T ss_dssp ---------CHHHHHHHHHHHGGGGSCSSCCTTTSTT-----TCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CCCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCc-----cCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHH
Confidence 4567665 8899999999999987 67799984 77 99999999999999999999999999999999999999
Q ss_pred hhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHc
Q psy18159 154 LGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCN 233 (294)
Q Consensus 154 ls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~ 233 (294)
+++..+.+.++||+|+||||||||+||..||+++++++++++.|++++|++||+.||++|+|+++.|||++|+++|++..
T Consensus 103 ls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l 182 (306)
T 3g33_B 103 LSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRL 182 (306)
T ss_dssp HHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTS
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCChh----HHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCC-C----ChHHHHHhcCccc
Q psy18159 234 RIQLP----LLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLT-P----WNKTLEYYSEEKL 293 (294)
Q Consensus 234 ~~~~~----~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~-~----W~~~L~~~sgY~~ 293 (294)
+...+ +...|++++++++.++.|+.|+||.|||||+++|+.+++.. . |.+.|.++|||+.
T Consensus 183 ~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~ 251 (306)
T 3g33_B 183 SLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 251 (306)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCH
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCH
Confidence 65533 55788999999999999999999999999999999988743 3 5789999999974
No 6
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.2e-47 Score=342.12 Aligned_cols=207 Identities=16% Similarity=0.184 Sum_probs=186.0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhhCCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q psy18159 74 ETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLY 153 (294)
Q Consensus 74 ~~~~~p~~~~eY~~dI~~~l~~~E~~~~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRf 153 (294)
....||.++.| +||.+|++.|.++.+ ...|+ ++++.||.++||||++||..|++.++|+|+||+|+|||
T Consensus 12 ~~~~dp~l~~d---~i~~~l~~~E~~~~p---~~~q~-----~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRf 80 (252)
T 1f5q_B 12 SSLLNEEDCRQ---MIYRSEREHDARMVG---VNVDQ-----HFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDEL 80 (252)
T ss_dssp CTTCCHHHHHH---HHHHHHHHHHHHHSS---SSHHH-----HHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred cCcCCHHHhHH---HHHHHHHHHHHHhCc---CccCC-----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44668888755 999999999998744 34466 89999999999999999999999999999999999999
Q ss_pred hhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHc
Q psy18159 154 LGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCN 233 (294)
Q Consensus 154 ls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~ 233 (294)
+++..+.+.++||+|+|||+||||+||..||.++++++++++.|++++|++||+.||++|+|+++.|||++|+++|++..
T Consensus 81 Ls~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~ 160 (252)
T 1f5q_B 81 FLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIM 160 (252)
T ss_dssp HHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCChh----HHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCC----hHHHHHhcCccc
Q psy18159 234 RIQLP----LLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPW----NKTLEYYSEEKL 293 (294)
Q Consensus 234 ~~~~~----~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W----~~~L~~~sgY~~ 293 (294)
+.+.+ +...|++++++++.|+.|+.|+||.|||||+.++.. +...| .+.|.++|||+.
T Consensus 161 ~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~--~~~~~~~~~~~~L~~~t~~~~ 226 (252)
T 1f5q_B 161 HAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMN--QKYDYYENRIDGVCKSLYITK 226 (252)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhc--cCCCchhhHHHHHHHHHCcCH
Confidence 76643 456899999999999999999999999999655542 22334 788999999974
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=5.4e-46 Score=339.67 Aligned_cols=206 Identities=21% Similarity=0.405 Sum_probs=191.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhhC-CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHh
Q psy18159 76 WEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYL 154 (294)
Q Consensus 76 ~~~p~~~~eY~~dI~~~l~~~E~~~-~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfl 154 (294)
..+|.++.||.+|||++|+..|..+ +.++|+..|+ ++++.||.++++||++++.+|++.++|+++||+|+|||+
T Consensus 8 ~~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~-----~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl 82 (283)
T 1w98_B 8 SPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHP-----LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYM 82 (283)
T ss_dssp CCSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCT-----TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHH
T ss_pred CCCcchhhcCHHHHHHHHHHHHHHhCCCchhhccCC-----CCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 3578888899999999999999987 6789999988 999999999999999999999999999999999999999
Q ss_pred hh-ccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHc
Q psy18159 155 GK-VVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCN 233 (294)
Q Consensus 155 s~-~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~ 233 (294)
++ ..+.+.++||+|+||||||||+||..||+++++++++++.|++++|.+||+.||++|+|+++.|||++|+++|++..
T Consensus 83 s~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~ 162 (283)
T 1w98_B 83 ATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVA 162 (283)
T ss_dssp HHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHh
Confidence 98 68999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCh-----------hHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCccc
Q psy18159 234 RIQL-----------PLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKL 293 (294)
Q Consensus 234 ~~~~-----------~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY~~ 293 (294)
+.+. .....+.+++++++.|+.+++|+||.|||||+++|+ |.+.+.++|||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~-------~~~~l~~~tg~~~ 226 (283)
T 1w98_B 163 YLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS-------SSELMQKVSGYQW 226 (283)
T ss_dssp TCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS-------CHHHHHHHSCCCH
T ss_pred ccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH-------ChHHHHHHhCCCH
Confidence 5432 233457789999999999999999999999999984 8999999999974
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=5.1e-45 Score=331.15 Aligned_cols=211 Identities=22% Similarity=0.285 Sum_probs=186.6
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhhC-CCCCccC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy18159 75 TWEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLP-FQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDL 152 (294)
Q Consensus 75 ~~~~p~~~~eY~~dI~~~l~~~E~~~-~~~~yl~-~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDR 152 (294)
...||..+ .+||+++|++.|.++ |.++|+. .|+ ++++.||.++++||++++.+|+++++|+++||+|+||
T Consensus 16 ~~~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~-----~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDR 87 (271)
T 2w96_A 16 AYPDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQK-----EVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDR 87 (271)
T ss_dssp ------------CHHHHHHHHHHHHTCCCTTHHHHTCS-----SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCC-----cCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHH
Confidence 34667665 569999999999987 6788886 477 9999999999999999999999999999999999999
Q ss_pred HhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Q psy18159 153 YLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARC 232 (294)
Q Consensus 153 fls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~ 232 (294)
|+++.++.+.++|++|+||||||||+||..||+++++++++++.|++++|.+||+.||++|+|+++.|||++|+++|++.
T Consensus 88 fls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~ 167 (271)
T 2w96_A 88 FLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 167 (271)
T ss_dssp HHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHT
T ss_pred hCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCChhH----HHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC-----CC----ChHHHHHhcCccc
Q psy18159 233 NRIQLPL----LTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL-----TP----WNKTLEYYSEEKL 293 (294)
Q Consensus 233 ~~~~~~~----~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~-----~~----W~~~L~~~sgY~~ 293 (294)
.+.+.+. ...|.+++++++.|+.|++|+||.|||||+++|+..++. +. |.+.|++++||+.
T Consensus 168 l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~ 241 (271)
T 2w96_A 168 MPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDP 241 (271)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCH
Confidence 8776554 357889999999999999999999999999999987642 33 4568999999974
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.8e-36 Score=269.84 Aligned_cols=167 Identities=20% Similarity=0.321 Sum_probs=153.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhh--
Q psy18159 116 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYIC-- 193 (294)
Q Consensus 116 ~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~-- 193 (294)
++...||..+++||.++|.+|+|+++|+++|++|||||+++.++.+.++|++|+||||||||+|| .|+++++++.++
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~ 113 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARS 113 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999 588999998654
Q ss_pred ---cCCc------CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCCh----hHHHHHHHHHHHHhcchhccCCc
Q psy18159 194 ---SHTY------SIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQL----PLLTLARYILELSLMEYSLIRES 260 (294)
Q Consensus 194 ---~~~y------t~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~----~~~~la~~llel~l~d~~~l~~~ 260 (294)
++.| ++++|.+||+.||++|+|+++.|||++|+.+|++.++.+. ++...|+++++.++.++.+++|+
T Consensus 114 ~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~ 193 (258)
T 2i53_A 114 LLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE 193 (258)
T ss_dssp HSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSC
T ss_pred HhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccC
Confidence 3344 4889999999999999999999999999999999988776 57899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC--CCChH
Q psy18159 261 DSKLACASLYLAQKMNKL--TPWNK 283 (294)
Q Consensus 261 PS~iAaAal~lA~~~~~~--~~W~~ 283 (294)
||.||+||+++|..++|. +.|+.
T Consensus 194 Ps~IAaAai~lA~~~~~~~~~~~~~ 218 (258)
T 2i53_A 194 PEIIAVAVMYLAGRLCKFEIQEWTS 218 (258)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGGBS
T ss_pred hHHHHHHHHHHHHHHhCCCCCcccc
Confidence 999999999999999875 35654
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=5e-35 Score=263.23 Aligned_cols=174 Identities=15% Similarity=0.268 Sum_probs=157.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhh--
Q psy18159 116 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYIC-- 193 (294)
Q Consensus 116 ~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~-- 193 (294)
+....||..+++||.++|.+|+|+++|+++|++|||||+++.++.+.++|++|+||||||||+||. |+++++++.++
T Consensus 25 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~ 103 (257)
T 2ivx_A 25 DKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHA 103 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999998 88999998654
Q ss_pred ------------cCCcC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhc-chhccC
Q psy18159 194 ------------SHTYS--IQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLM-EYSLIR 258 (294)
Q Consensus 194 ------------~~~yt--~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~-d~~~l~ 258 (294)
++.|+ +++|.+||+.||++|+|+++.|||+.|+.+|++..+.+.++...|+++++.++. +..++.
T Consensus 104 ~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~ 183 (257)
T 2ivx_A 104 CLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQ 183 (257)
T ss_dssp HHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGT
T ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHc
Confidence 44566 899999999999999999999999999999999999999999999999999985 556899
Q ss_pred CcHHHHHHHHHHHHHHhcCC--------CCChHHHHHhcCcc
Q psy18159 259 ESDSKLACASLYLAQKMNKL--------TPWNKTLEYYSEEK 292 (294)
Q Consensus 259 ~~PS~iAaAal~lA~~~~~~--------~~W~~~L~~~sgY~ 292 (294)
|+||.||+||+++|..++|. +.|...+ .+||+
T Consensus 184 ~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~ 223 (257)
T 2ivx_A 184 YKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVT 223 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCC
Confidence 99999999999999998774 3587755 34554
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-33 Score=249.98 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=155.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccc-cchhhhhhhhhhhhccCCCCCCCChhhHHhhhcC
Q psy18159 117 INAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSR-LNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSH 195 (294)
Q Consensus 117 i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~-~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~ 195 (294)
+... |..+++||.+++..|+|+++|+++|++|+|||+++.++.+ .++|++|+||||||||+|| .|++++|++.++++
T Consensus 24 ~~~~-R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~ 101 (235)
T 1zp2_A 24 LSKD-TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEAND 101 (235)
T ss_dssp SCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHT
T ss_pred hhHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHH
Confidence 4434 9999999999999999999999999999999999999999 9999999999999999999 57799999998865
Q ss_pred ------CcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHH
Q psy18159 196 ------TYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASL 269 (294)
Q Consensus 196 ------~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal 269 (294)
.+++++|.+||+.||++|+|++..++|+.|+.+|++..+.+.++...|.++++.++.++.+++|+||.|||||+
T Consensus 102 ~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 102 LWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred HccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 68999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred HHHHHhcCCC--CChHHH
Q psy18159 270 YLAQKMNKLT--PWNKTL 285 (294)
Q Consensus 270 ~lA~~~~~~~--~W~~~L 285 (294)
++|..+.+.+ .|.+.+
T Consensus 182 ~lA~~~~~~~~~~~~~~~ 199 (235)
T 1zp2_A 182 LISCCNDENTIPKLLDLI 199 (235)
T ss_dssp HHHHTSCTTHHHHHHHHC
T ss_pred HHHHHhcCCCCCCCcchh
Confidence 9999998753 355544
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=258.39 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhc---
Q psy18159 118 NAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS--- 194 (294)
Q Consensus 118 ~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~--- 194 (294)
...||..+++||.++|.+|+|+++|+++|++|||||+++.++.+.++|++|+||||||||+||..+|.+++++.+++
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~ 118 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVL 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999998888999987652
Q ss_pred -----------CCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHH
Q psy18159 195 -----------HTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSK 263 (294)
Q Consensus 195 -----------~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~ 263 (294)
..+++++|++||+.||++|+|+++.+||+.|+.+|++.++.+.++..+|+++++.++.++.++.|+||.
T Consensus 119 k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~ 198 (285)
T 3rgf_B 119 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFM 198 (285)
T ss_dssp HHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHH
T ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHH
Confidence 247899999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--CChHHH
Q psy18159 264 LACASLYLAQKMNKLT--PWNKTL 285 (294)
Q Consensus 264 iAaAal~lA~~~~~~~--~W~~~L 285 (294)
||+|||++|..+.+.+ .|...+
T Consensus 199 IAaAaiylA~~~~~~~~~~W~~~~ 222 (285)
T 3rgf_B 199 IALACLHVACVVQQKDARQWFAEL 222 (285)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHTS
T ss_pred HHHHHHHHHHHHcCCChhhHHHHH
Confidence 9999999999998853 676543
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=9.1e-34 Score=266.48 Aligned_cols=169 Identities=17% Similarity=0.292 Sum_probs=153.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhh--
Q psy18159 116 NINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYIC-- 193 (294)
Q Consensus 116 ~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~-- 193 (294)
+....||..+++||.+++..|+|+++|+++|++|||||+++..+.+.++|+||+||||||||+||. |+.+++++.++
T Consensus 32 ~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 32 DKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHH
Confidence 344689999999999999999999999999999999999999999999999999999999999998 88999998654
Q ss_pred ------------cCCcC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhc-chhccC
Q psy18159 194 ------------SHTYS--IQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLM-EYSLIR 258 (294)
Q Consensus 194 ------------~~~yt--~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~-d~~~l~ 258 (294)
++.|+ +++|++||+.||++|+|++..|||+.||.+|++.++.+.++..+|+++++.++. +..++.
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~ 190 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQ 190 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGT
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhc
Confidence 34565 889999999999999999999999999999999999888999999999999996 445799
Q ss_pred CcHHHHHHHHHHHHHHhcCC--------CCChHHH
Q psy18159 259 ESDSKLACASLYLAQKMNKL--------TPWNKTL 285 (294)
Q Consensus 259 ~~PS~iAaAal~lA~~~~~~--------~~W~~~L 285 (294)
|+||.||||||++|..+++. ..|...+
T Consensus 191 y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~ 225 (358)
T 2pk2_A 191 YTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV 225 (358)
T ss_dssp SCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH
Confidence 99999999999999999863 2587755
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.98 E-value=5.5e-32 Score=251.25 Aligned_cols=174 Identities=11% Similarity=0.099 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcC-
Q psy18159 119 AEMRSVLVDWMVEVQETFE--LNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSH- 195 (294)
Q Consensus 119 ~~~R~~lvdWl~~v~~~~~--l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~- 195 (294)
..+|...++||.++|..|+ |+++|+++|++|||||++..++.+.++|++|+||||||||+||. |++++++++.+.+
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccC
Confidence 4688999999999999999 99999999999999999999999999999999999999999997 6789999987643
Q ss_pred ----CcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHc-------CCChhHHHHHHHHHHHHhcchhccCCcHHHH
Q psy18159 196 ----TYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCN-------RIQLPLLTLARYILELSLMEYSLIRESDSKL 264 (294)
Q Consensus 196 ----~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~-------~~~~~~~~la~~llel~l~d~~~l~~~PS~i 264 (294)
.|++++|++||+.||++|+|++.++||+.|+.+|+..+ +....+...|+++++.++.++.++.|+||.|
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~I 212 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQI 212 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHH
Confidence 36789999999999999999999999999999998653 2234577899999999999999999999999
Q ss_pred HHHHHHHHHHhcCC--CCChHHHHHh--cCccc
Q psy18159 265 ACASLYLAQKMNKL--TPWNKTLEYY--SEEKL 293 (294)
Q Consensus 265 AaAal~lA~~~~~~--~~W~~~L~~~--sgY~~ 293 (294)
|||||++|..+.|. +.|..++.++ ++|++
T Consensus 213 AaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~ 245 (323)
T 1jkw_A 213 ALTAILSSASRAGITMESYLSESLMLKENRTCL 245 (323)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccccccH
Confidence 99999999998875 5899998776 66653
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.96 E-value=4.5e-28 Score=211.11 Aligned_cols=170 Identities=9% Similarity=0.089 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCH
Q psy18159 120 EMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSI 199 (294)
Q Consensus 120 ~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~ 199 (294)
+......++|.++|..++|++.|..+|+.|++||+..+.+.+.+.+++|+||+|+|||+||. |++++|++.+++ +++
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~ 79 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISK 79 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCH
Confidence 34567899999999999999999999999999999999999999999999999999999886 889999999887 799
Q ss_pred HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCC
Q psy18159 200 QDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLT 279 (294)
Q Consensus 200 ~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~ 279 (294)
++|.++|+.|++.|+|++..++|+.|+.+|.+.++.+.++.+.|+++++.++.+..+.+++|+.||||||++|.++.|.+
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~ 159 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEK 159 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CChHHHHHhcCcc
Q psy18159 280 PWNKTLEYYSEEK 292 (294)
Q Consensus 280 ~W~~~L~~~sgY~ 292 (294)
.|.+.+..++|++
T Consensus 160 ~~~~~i~~~~~v~ 172 (207)
T 1c9b_A 160 RTQKEIGDIAGVA 172 (207)
T ss_dssp CCHHHHHHHHTCC
T ss_pred CCHHHHHHHhCCC
Confidence 9999999999986
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.92 E-value=5.9e-24 Score=184.02 Aligned_cols=170 Identities=11% Similarity=0.097 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCH
Q psy18159 120 EMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSI 199 (294)
Q Consensus 120 ~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~ 199 (294)
+......++|.++|..++|++.+...|..+++|++....+.+.+.+.++++|+++|||.++ .|.+++|+..+++ ++.
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~ 83 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDK 83 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCH
Confidence 3356889999999999999999999999999999999999999999999999999999987 6889999999886 789
Q ss_pred HHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcC
Q psy18159 200 QDLKDMEIKLVTAIGFDLGI--PLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNK 277 (294)
Q Consensus 200 ~~i~~mE~~IL~~L~f~l~~--ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~ 277 (294)
.+|.++++.|++.|+|++.. ++|..|+.+|.+.++.+.++...|+++++.+..+..+.+++|+.|||||||+|.++.|
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~ 163 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEG 163 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHhcCcc
Q psy18159 278 LTPWNKTLEYYSEEK 292 (294)
Q Consensus 278 ~~~W~~~L~~~sgY~ 292 (294)
.+.|.+.+..++|++
T Consensus 164 ~~~t~~ei~~~~~vs 178 (200)
T 1ais_B 164 EKRTQREVAEVARVT 178 (200)
T ss_dssp CCCCHHHHHHHHTCC
T ss_pred CCCCHHHHHHHhCCC
Confidence 999999999999976
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.8e-20 Score=173.92 Aligned_cols=167 Identities=9% Similarity=0.081 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHH
Q psy18159 123 SVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 202 (294)
Q Consensus 123 ~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i 202 (294)
......|.+++..++|+..+...|..+|.|++....+.....+.+++||+|||||.++. |.+++|++.+++ +++++|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~keI 203 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHHH
Confidence 46778999999999999999999999999999999999999999999999999998774 889999999886 789999
Q ss_pred HHHHHHHHHHhC------------CCCCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHH
Q psy18159 203 KDMEIKLVTAIG------------FDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLY 270 (294)
Q Consensus 203 ~~mE~~IL~~L~------------f~l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~ 270 (294)
.++++.|++.|+ +++..++|..|+.+|++.++.+.++...|+++++.+..+..+.+++|+.|||||||
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIy 283 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHHHTCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHhcCCCCChHHHHHhcCcc
Q psy18159 271 LAQKMNKLTPWNKTLEYYSEEK 292 (294)
Q Consensus 271 lA~~~~~~~~W~~~L~~~sgY~ 292 (294)
+|..+++.+.|...+...+|.+
T Consensus 284 lAa~~~~~~~t~~eIa~~~~Vs 305 (345)
T 3k7a_M 284 LNILLFQIPITAAKVGQTLQVT 305 (345)
T ss_dssp ----------------------
T ss_pred HHHHHHCCCCCHHHHHHHHCCC
Confidence 9999999888999888888765
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.48 E-value=4.4e-14 Score=131.82 Aligned_cols=154 Identities=10% Similarity=0.118 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHH
Q psy18159 123 SVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 202 (294)
Q Consensus 123 ~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i 202 (294)
......|.++|..++|+..+...|..++.++.....+.......++++|+|+|||.++ .|.++.|+..+++ .++.+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhC--CCHHHH
Confidence 5667788999999999999999999999999999889999999999999999999765 6889999998886 578999
Q ss_pred HHHHHHHHHHhCCC------------CCCCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHH
Q psy18159 203 KDMEIKLVTAIGFD------------LGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLY 270 (294)
Q Consensus 203 ~~mE~~IL~~L~f~------------l~~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~ 270 (294)
.+..+.|.+.|+.. +...+|..|+.+|...++.+.++...|..+++.+..+....+.+|+.|||||||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIy 283 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHH
Confidence 99999999999974 667789999999999999999999999999999998887789999999999999
Q ss_pred HHHHhcCCC
Q psy18159 271 LAQKMNKLT 279 (294)
Q Consensus 271 lA~~~~~~~ 279 (294)
+|..+.+.+
T Consensus 284 lAa~l~g~~ 292 (345)
T 4bbr_M 284 LNILLFQIP 292 (345)
T ss_dssp ---------
T ss_pred HHHHHhCCC
Confidence 999988754
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.28 E-value=3.1e-06 Score=76.31 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhcc---ccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHH
Q psy18159 124 VLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVV---CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 200 (294)
Q Consensus 124 ~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~---v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~ 200 (294)
.+-+|+..+...-+++.+++-.|+.|+||+....+ +...+..-+-++|+.+|+|+-+-....-+.+..++ +++.+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHH
Confidence 46678999999999999999999999999988543 56677888889999999999776666677777774 47999
Q ss_pred HHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Q psy18159 201 DLKDMEIKLVTAIGFDLGIPLSYRFLRRYARC 232 (294)
Q Consensus 201 ~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~ 232 (294)
++-.||+..|..|+|+|.++ +..|...+...
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 99999999999999999766 44566666554
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.22 E-value=0.0014 Score=55.54 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHH
Q psy18159 127 DWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDME 206 (294)
Q Consensus 127 dWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE 206 (294)
++|..++..++++.++...|..++.+......+.+.....++++|+++||+... .+.+.+++..+++ .+..+|.+.=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~-~~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEG-EKRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhC--CCHHHHHHHH
Confidence 567788999999999999999999999988778889999999999999999865 4568899988877 5889999999
Q ss_pred HHHHHHhCCCCC
Q psy18159 207 IKLVTAIGFDLG 218 (294)
Q Consensus 207 ~~IL~~L~f~l~ 218 (294)
+.+.+.|+.++.
T Consensus 187 ~~l~~~l~~~~~ 198 (200)
T 1ais_B 187 KELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHcCCCCC
Confidence 999999997653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.79 E-value=0.041 Score=46.62 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCcc
Q psy18159 222 SYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEK 292 (294)
Q Consensus 222 p~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY~ 292 (294)
...++..+...++....+...|..+....+....+-++++..+|+||+|+|.+..+.+.--..+...++++
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~ 78 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 78 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC
Confidence 46788899999999999999999999999888888899999999999999999998887667777666654
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=92.42 E-value=0.54 Score=40.41 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccC-CcHHHHHHHHHHHHHHhcCCCCChHHHHHhc
Q psy18159 223 YRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIR-ESDSKLACASLYLAQKMNKLTPWNKTLEYYS 289 (294)
Q Consensus 223 ~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~-~~PS~iAaAal~lA~~~~~~~~W~~~L~~~s 289 (294)
.+|+.......+....+..+|..+++..+....+.+ +.+-.+|+|||++|.++.+.+.--..+...+
T Consensus 32 ~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~ 99 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEA 99 (235)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHH
Confidence 567888888889999999999999999888888888 9999999999999999988765455555443
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=91.35 E-value=0.93 Score=41.59 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCc
Q psy18159 219 IPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEE 291 (294)
Q Consensus 219 ~ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY 291 (294)
.-..+..|..+...++.+..+.+.|..+...+.....+-+.+...+||||||+|++..+.+.--..+...++-
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v 198 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCC
Confidence 3456778889999999999999999999999887777778999999999999999999877555555555443
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.39 E-value=1.2 Score=38.71 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy18159 222 SYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLE 286 (294)
Q Consensus 222 p~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~ 286 (294)
..+|+.......+....+..+|..+++..+....+..+.+-.+|+|||++|.++.+.+.--..+.
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~ 98 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVI 98 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHH
Confidence 35788888888899999999999999999998889999999999999999999988654444443
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=89.19 E-value=1.7 Score=37.67 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy18159 223 YRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLE 286 (294)
Q Consensus 223 ~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~ 286 (294)
.+|+.......+....+..+|..+++..+....+-.+.+-.+|+|||++|.++.+.+.=-..+.
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~ 108 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDII 108 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHH
Confidence 5688888888899999999999999999988888999999999999999999987654344443
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=88.97 E-value=8.3 Score=32.71 Aligned_cols=148 Identities=13% Similarity=0.172 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhc---cccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHH
Q psy18159 124 VLVDWMVEVQETFELNHETLYLAVKLVDLYLGKV---VCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQ 200 (294)
Q Consensus 124 ~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~---~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~ 200 (294)
.+.+-|+.++.+-+++..++-.||.+--.|.-.. ...-++-+-++++|++||+- +-..|..+.++..+ |.....=
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae-~~~~PiplaE~r~l-D~sL~Dv 91 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAE-EAQQPLPLAEVRCL-DSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHH-CTTCCCH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHH-HcCCCccHHHHHHH-hhhhhHH
Confidence 3455568899999999999999999998888654 35667889999999999997 34577778776543 3333323
Q ss_pred HHHHHHHHHHHHhCCCC-----CCCChHHHHHHHHHHcCCChhHHH-HHHHHHHHHhcchhccCCcHHHHHHHHHHHHHH
Q psy18159 201 DLKDMEIKLVTAIGFDL-----GIPLSYRFLRRYARCNRIQLPLLT-LARYILELSLMEYSLIRESDSKLACASLYLAQK 274 (294)
Q Consensus 201 ~i~~mE~~IL~~L~f~l-----~~ptp~~Fl~~~~~~~~~~~~~~~-la~~llel~l~d~~~l~~~PS~iAaAal~lA~~ 274 (294)
++.+. +|++.++..= ...-.-..|..|...++.....+. -+..+++..-.-..+..+.--.--.-|++||+.
T Consensus 92 elrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlLLArT 169 (260)
T 3h4c_A 92 ELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTTALLLART 169 (260)
T ss_dssp HHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34443 4566665431 111122345555555555443332 233344433333345555555555566777776
Q ss_pred h
Q psy18159 275 M 275 (294)
Q Consensus 275 ~ 275 (294)
.
T Consensus 170 ~ 170 (260)
T 3h4c_A 170 A 170 (260)
T ss_dssp S
T ss_pred c
Confidence 4
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=88.70 E-value=1 Score=39.94 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCC
Q psy18159 223 YRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTP 280 (294)
Q Consensus 223 ~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~ 280 (294)
.+||.......+....+..+|..+++..+....+..+.+-.+|+|||++|.++.+.+.
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~ 104 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGV 104 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhcccc
Confidence 4567777778889999999999999999988889999999999999999999987654
No 28
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.76 E-value=1.3 Score=40.72 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHH
Q psy18159 222 SYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLE 286 (294)
Q Consensus 222 p~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~ 286 (294)
..+||......++....+..+|..+++..+....+..+.+-.+|+|||++|.++.+.+.--..+.
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v 105 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVI 105 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence 46777777778888899999999999999998889999999999999999999987654334443
No 29
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=87.65 E-value=1.6 Score=39.59 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHHHHHHHcC--CChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCC
Q psy18159 224 RFLRRYARCNR--IQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTP 280 (294)
Q Consensus 224 ~Fl~~~~~~~~--~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~ 280 (294)
.||..+....+ ....+..+|..+++..+....+..+.|-.||+|||++|.++-+.+.
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~ 120 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV 120 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCC
Confidence 45666777777 8888999999999999998889999999999999999999887653
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=87.37 E-value=2.5 Score=36.62 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCChhHH----HHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCC----hhhHHhhhcCCcC
Q psy18159 127 DWMVEVQETFELNHETL----YLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQ----LSDLEYICSHTYS 198 (294)
Q Consensus 127 dWl~~v~~~~~l~~eTl----~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~----i~dl~~i~~~~yt 198 (294)
+|+......++.+.++. ..|..+++.-+..........-.+|++|+++|.+.....+.. ...+..+++ |+
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg--~~ 231 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILN--FS 231 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHT--CC
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHC--cC
Confidence 45556666777777653 356677776665555667788899999999999985222222 445555554 68
Q ss_pred HHHHHHHHHHHHHHh
Q psy18159 199 IQDLKDMEIKLVTAI 213 (294)
Q Consensus 199 ~~~i~~mE~~IL~~L 213 (294)
.++|...=..|.+.+
T Consensus 232 ~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887766666543
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=86.49 E-value=3.2 Score=36.02 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCChhHH----HHHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCC-----CCChhhHHhhhcCC
Q psy18159 126 VDWMVEVQETFELNHETL----YLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRI-----PPQLSDLEYICSHT 196 (294)
Q Consensus 126 vdWl~~v~~~~~l~~eTl----~lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~-----~~~i~dl~~i~~~~ 196 (294)
.+|+......++.+.++. ..|..+++.-+..........-.+|++|+++|.+.-... +.....+..++ +
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t--~ 229 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL--G 229 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH--C
Confidence 467777777778777653 457777776665555677788899999999999876532 12234444554 3
Q ss_pred cCHHHHHHHHHHHHHHh
Q psy18159 197 YSIQDLKDMEIKLVTAI 213 (294)
Q Consensus 197 yt~~~i~~mE~~IL~~L 213 (294)
++.++|...=..|.+.+
T Consensus 230 ~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 68888887766665543
No 32
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=86.06 E-value=0.4 Score=44.02 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCcc
Q psy18159 222 SYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEK 292 (294)
Q Consensus 222 p~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY~ 292 (294)
.+.++..+...++.+..+...|..+...++....+-+.+...+||||||+|++..+.+.--..+...++++
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~ 199 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVK 199 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCC
Confidence 35778888888999999999999999998877777889999999999999999988776666666666654
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=86.05 E-value=3.4 Score=36.11 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHhcC
Q psy18159 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL-TPWNKTLEYYSE 290 (294)
Q Consensus 224 ~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~-~~W~~~L~~~sg 290 (294)
+|+.......+.......+|-.+++..+....+-....-.+|+||+++|.++.+. +.=-..+..+++
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~ 129 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTD 129 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhc
Confidence 5555666666777788888888888888877777888999999999999998876 444556666664
No 34
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=85.80 E-value=3.4 Score=36.13 Aligned_cols=68 Identities=10% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHhcC
Q psy18159 223 YRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL-TPWNKTLEYYSE 290 (294)
Q Consensus 223 ~~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~-~~W~~~L~~~sg 290 (294)
.+|+.......+...++..+|-.+++..+....+-...+-.+|+||+++|.++.+. ++--..+...++
T Consensus 42 v~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~ 110 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTD 110 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhc
Confidence 46677777778888889999999999998888888888999999999999998775 455567777764
No 35
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=82.43 E-value=3.5 Score=35.79 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHhcC
Q psy18159 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL-TPWNKTLEYYSE 290 (294)
Q Consensus 224 ~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~-~~W~~~L~~~sg 290 (294)
+|+.......+...+...+|-.+++..+....+-....-.+|+||+++|.++.+. ++-...+...++
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~ 111 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITD 111 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHc
Confidence 5666666667777788888887778777766666677889999999999998876 555666766664
No 36
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=82.32 E-value=10 Score=28.08 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=55.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhhhcc------ccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHH
Q psy18159 129 MVEVQETFELNHETLYLAVKLVDLYLGKVV------CSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 202 (294)
Q Consensus 129 l~~v~~~~~l~~eTl~lAv~ilDRfls~~~------v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i 202 (294)
+.++|..|++.. ....|-.++++|=..-+ ++-++.+ ..++|+|.|||..-..+ .-..++..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kV-dK~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKV-DKNKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCC-CHHHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCC-CHHHHHHHHC--CCHHHH
Confidence 457899999766 77888899999986532 3334444 55689999999877655 4456777665 367787
Q ss_pred HHHHHHHHH
Q psy18159 203 KDMEIKLVT 211 (294)
Q Consensus 203 ~~mE~~IL~ 211 (294)
-+.+..+-+
T Consensus 81 ~~l~~~~e~ 89 (95)
T 3m03_A 81 DRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766544
No 37
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=73.80 E-value=11 Score=33.49 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHhcCc
Q psy18159 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL-TPWNKTLEYYSEE 291 (294)
Q Consensus 224 ~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~-~~W~~~L~~~sgY 291 (294)
+|+.......+....+..+|-.+++.-+....+.....-.+|+||+++|.++... +.=...+..++++
T Consensus 76 dwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~ 144 (306)
T 3g33_B 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDH 144 (306)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTT
T ss_pred HHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhcc
Confidence 5666666667777888888888888887777777888999999999999998543 3344556666653
No 38
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=73.50 E-value=11 Score=33.13 Aligned_cols=67 Identities=13% Similarity=0.294 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcc-hhccCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHhcC
Q psy18159 224 RFLRRYARCNRIQLPLLTLARYILELSLME-YSLIRESDSKLACASLYLAQKMNKL-TPWNKTLEYYSE 290 (294)
Q Consensus 224 ~Fl~~~~~~~~~~~~~~~la~~llel~l~d-~~~l~~~PS~iAaAal~lA~~~~~~-~~W~~~L~~~sg 290 (294)
+|+.......+...+...+|-.+++..+.- ...-....-.+|+||+++|.++.+. ++-...+...++
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~ 123 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD 123 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc
Confidence 556666666677777777887777777664 3456778889999999999998865 445566666664
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=65.29 E-value=23 Score=30.60 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCC-CCChHHHHHhcCcc
Q psy18159 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL-TPWNKTLEYYSEEK 292 (294)
Q Consensus 224 ~Fl~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~-~~W~~~L~~~sgY~ 292 (294)
+|+.......+...++..+|-.+++.-+.....-....-.+|++|+++|.++... +.=...+..+|+++
T Consensus 54 dWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~ 123 (252)
T 1f5q_B 54 TWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGA 123 (252)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCC
Confidence 4555556666777777788877777777666666677889999999999997764 34455666766543
No 40
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=64.21 E-value=37 Score=30.20 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHcCCChhHHHHHHHHHHHHhc-chhc--cCCcHHHHHHHHHHHHHHhc-CCCCChHHHHHhcCccc
Q psy18159 220 PLSYRFLRRYARCNRIQLPLLTLARYILELSLM-EYSL--IRESDSKLACASLYLAQKMN-KLTPWNKTLEYYSEEKL 293 (294)
Q Consensus 220 ptp~~Fl~~~~~~~~~~~~~~~la~~llel~l~-d~~~--l~~~PS~iAaAal~lA~~~~-~~~~W~~~L~~~sgY~~ 293 (294)
++...|+.++.+....+....-+|-++++.... ...+ -.....-+-.+|+.+|.+.+ +...|+...+.++|.++
T Consensus 75 ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl 152 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRC 152 (293)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCH
Confidence 356789999999888887777666655554433 2333 45678889999999999966 45578889999998764
No 41
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=51.76 E-value=19 Score=32.29 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=46.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhhh----ccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhc
Q psy18159 129 MVEVQETFELNHETLYLAVKLVDLYLGK----VVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICS 194 (294)
Q Consensus 129 l~~v~~~~~l~~eTl~lAv~ilDRfls~----~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~ 194 (294)
..++|..++++..|...|..++.+.-+. .....+..... .+|+++|+.-.+....++.++++.++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w-~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELW-GICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHH-HHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHH-HHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 4578999999999999999999996553 12333333444 45599999877777778888887764
No 42
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=34.93 E-value=31 Score=19.19 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhCCC
Q psy18159 199 IQDLKDMEIKLVTAIGFD 216 (294)
Q Consensus 199 ~~~i~~mE~~IL~~L~f~ 216 (294)
.++|.++|..|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 578999999999999987
No 43
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=32.62 E-value=33 Score=27.35 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=28.5
Q ss_pred hhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHH
Q psy18159 164 LQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 202 (294)
Q Consensus 164 lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i 202 (294)
-.|+-++|-++|..+....|-.++++..+.+ -||+++-
T Consensus 111 ~~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe 148 (160)
T 2p1m_A 111 KNLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEE 148 (160)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 3578889999999998776666777777755 4887654
No 44
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=30.87 E-value=28 Score=28.11 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=38.1
Q ss_pred CCChhHHH---HHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHH
Q psy18159 137 ELNHETLY---LAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLK 203 (294)
Q Consensus 137 ~l~~eTl~---lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~ 203 (294)
++++++++ +|.+|||- -.|+-++|-.+|.++....|-.++++..+.++ ||+++--
T Consensus 100 ~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd-~t~eEe~ 157 (169)
T 3v7d_A 100 KVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND-FTPEEEA 157 (169)
T ss_dssp CSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCC-CCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC-CCHHHHH
Confidence 56666654 35555543 45788899999998887777667777777654 8877543
No 45
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=30.40 E-value=35 Score=27.04 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=36.7
Q ss_pred CCChhHHH---HHHHHHHHHhhhccccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHH
Q psy18159 137 ELNHETLY---LAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDL 202 (294)
Q Consensus 137 ~l~~eTl~---lAv~ilDRfls~~~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i 202 (294)
+++.++++ +|.+|||- -.|+-++|-++|..+....|-.++++..+.++ ||+++-
T Consensus 93 ~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d-~t~eEe 149 (159)
T 2ast_A 93 KVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIKND-FTEEEE 149 (159)
T ss_dssp CSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCC-SCTTHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC-CCHHHH
Confidence 56666653 35555543 35778899999999988776667777777543 776654
No 46
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=22.12 E-value=33 Score=23.72 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=34.1
Q ss_pred chhhhHHHHHHHHHHHHhhCCCCCccCC-CCCCCCCCCCHHHHHHHHHH
Q psy18159 81 QVSCYAMHIFEYLKSREAEFQIKDYLPF-QSSTEKGNINAEMRSVLVDW 128 (294)
Q Consensus 81 ~~~eY~~dI~~~l~~~E~~~~~~~yl~~-q~~~~~~~i~~~~R~~lvdW 128 (294)
-+.||++|..+.-+.-|.......|+++ |. .++|-.+....|-
T Consensus 17 t~TdyGKDL~EKak~~ElQ~QakaYfektqe-----qltPlvkkagTdl 60 (77)
T 2ou1_A 17 TVTDYGKDLMEKVKSPELQAEAKSYFEKSKE-----QLTPLIKKAGTEL 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHT-----TTSHHHHTHHHHT
T ss_pred HHHHHhHHHHHHcccHHHHHHHHHHHHHHHH-----HHhHHHHHhhhHH
Confidence 3568999999999999988877888877 55 7888877765553
Done!