RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18159
(294 letters)
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 239 bits (613), Expect = 5e-79
Identities = 65/208 (31%), Positives = 120/208 (57%), Gaps = 5/208 (2%)
Query: 82 VSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHE 141
S Y I+ YL+ EA ++ + MR++L+DW+V+VQ F L E
Sbjct: 3 SSEYVKDIYAYLRQLEAAQAVRPKYLLGR-----EVTGNMRAILIDWLVQVQMKFRLLQE 57
Query: 142 TLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 201
T+Y+ V ++D ++ + LQL+G TA+F++SK+++ PP++ D ++ +TY+
Sbjct: 58 TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117
Query: 202 LKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESD 261
++ ME+K++ A+ F LG PL FLRR ++ + + TLA+Y++EL++++Y ++
Sbjct: 118 IRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPP 177
Query: 262 SKLACASLYLAQKMNKLTPWNKTLEYYS 289
S++A + LA K+ W TL++Y
Sbjct: 178 SQIAAGAFSLALKILDNGEWTPTLQHYL 205
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 237 bits (607), Expect = 2e-78
Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 12/233 (5%)
Query: 69 DDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKD-YLPFQSSTEKGNINAEMRSVLVD 127
D ++ + + LK RE Q+ + + R++L+
Sbjct: 3 DSPNRLNRAKIDSTTMKDPRVLNNLKLRELLLPKFTSLWEIQT-----EVTVDNRTILLT 57
Query: 128 WMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLS 187
WM + E+FEL+ L+V ++D YL K ++ LQ +GA + + SK P +S
Sbjct: 58 WMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVS 117
Query: 188 DLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRI----QLPLLTLA 243
L Y+ ++ +L + E ++ A+ +D L+ FL +I L A
Sbjct: 118 KLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAA 177
Query: 244 RYILELSLMEYSLIRESDSKLACASLYLAQKMNKLT--PWNKTLEYYSEEKLY 294
+ +L++ ++ S + L + + PW LE S +
Sbjct: 178 STTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNF 230
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 232 bits (595), Expect = 2e-76
Identities = 66/212 (31%), Positives = 114/212 (53%), Gaps = 8/212 (3%)
Query: 81 QVSCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELN 139
+V Y I YL+ E + + K Y+ Q +I MR++LVDW+VEV E ++L
Sbjct: 2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQP-----DITNSMRAILVDWLVEVGEEYKLQ 56
Query: 140 HETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSI 199
+ETL+LAV +D +L + R LQL+G A+ ++SKF++ PP++++ YI TY+
Sbjct: 57 NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTK 116
Query: 200 QDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR-CNRIQLPLLTLARYILELSLMEYS-LI 257
+ + ME ++ + FDL P +FL +Y + +LA ++ ELSL++ +
Sbjct: 117 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYL 176
Query: 258 RESDSKLACASLYLAQKMNKLTPWNKTLEYYS 289
+ S +A A+ +LA W ++L +
Sbjct: 177 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKT 208
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 220 bits (562), Expect = 3e-71
Identities = 46/233 (19%), Positives = 104/233 (44%), Gaps = 27/233 (11%)
Query: 72 DKETWEDPLQVSCYAMH--IFEYLKSREAEFQI-KDYLPFQSSTEKGNINAEMRSVLVDW 128
+ PL V +A +++ + ++E + + +L + +MR++L+DW
Sbjct: 2 IAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHP-----LLQPKMRAILLDW 56
Query: 129 MVEVQETFELNHETLYLAVKLVDLYL-GKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLS 187
++EV E ++L+ ET YLA D Y+ + + LQL+G +++F+++K ++ PP+L
Sbjct: 57 LMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLH 116
Query: 188 DLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRI-----------Q 236
Y+ S ++ ME+ ++ A+ + L +L Y + +
Sbjct: 117 QFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYP 176
Query: 237 LPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYS 289
+ +L+L +++ + LA ++LY ++ ++ S
Sbjct: 177 QQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHF-------SSSELMQKVS 222
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 218 bits (557), Expect = 4e-70
Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 14/250 (5%)
Query: 50 DKEIQLEDKPKVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIK-DYLPF 108
D + + P + + P + + L E + + Y
Sbjct: 2 DYKDDDDKSPGGSMELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYF-- 59
Query: 109 QSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLG 168
+ I MR +L WM+EV E E LA+ +D YL V + LQLLG
Sbjct: 60 --QCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLG 117
Query: 169 ATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRR 228
A + ++SK + P + L H S + L+D E+ ++ + +DL +++ FL
Sbjct: 118 AVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAF 177
Query: 229 YARC----NRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTP---- 280
Q + A+ L L +Y+ S +A S+ A +
Sbjct: 178 ILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGD 237
Query: 281 -WNKTLEYYS 289
+ L +
Sbjct: 238 ELTELLAGIT 247
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 216 bits (551), Expect = 9e-70
Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 13/227 (5%)
Query: 68 VDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLV 126
V+ + + L + + E Y + + MR ++
Sbjct: 10 VETIRRAYPDANL----LNDRVLRAMLKAEETCAPSVSYF----KCVQKEVLPSMRKIVA 61
Query: 127 DWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQL 186
WM+EV E + E LA+ +D +L + LQLLGAT +FV+SK + IP
Sbjct: 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTA 121
Query: 187 SDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR----CNRIQLPLLTL 242
L ++ ++L ME+ LV + ++L + F+ + + +
Sbjct: 122 EKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKH 181
Query: 243 ARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYS 289
A+ + L + I S +A S+ A + L N L YY
Sbjct: 182 AQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYR 228
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 208 bits (531), Expect = 6e-67
Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 20/232 (8%)
Query: 70 DFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKD--YLPFQSSTEKGNINAEMRSVLVD 127
+ DP IF + E F D + FQ ++ + MR +L
Sbjct: 5 NNPPSGLLDPTLCEDR---IFYNILEIEPRFLTSDSVFGTFQQ-----SLTSHMRKLLGT 56
Query: 128 WMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLS 187
WM V + + L + LA+ L+D L S+ + Q G+ + V+SK P S
Sbjct: 57 WMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTS 116
Query: 188 DLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLS----YRFLRRYARCNRIQLPLLTLA 243
L Y + ++S Q+L D E +L+ + + L+ L + ++
Sbjct: 117 SLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEV 176
Query: 244 RYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTP------WNKTLEYYS 289
++ +L++ S ++ A L N + L
Sbjct: 177 NTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL 228
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 198 bits (505), Expect = 5e-63
Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 13/228 (5%)
Query: 72 DKETWEDPLQVSCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMV 130
+ + + D ++ + + E E + + + ++ R VL WM
Sbjct: 5 EFQGFLDSSLLN--EEDCRQMIYRSEREHDARMVGVNVDQ-----HFTSQYRKVLTTWMF 57
Query: 131 EVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLE 190
V + ++ LAV L+D R N Q A A+ ++ K +P + + L
Sbjct: 58 CVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLA 117
Query: 191 YICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRI----QLPLLTLARYI 246
Y+C + L +E+K + + + LS + L + L R
Sbjct: 118 YLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPK 177
Query: 247 LELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKLY 294
+ +L + + + A ++L K + ++ +
Sbjct: 178 IFCALCDGRSAMKRPVLITLACMHLTMNQ-KYDYYENRIDGVCKSLYI 224
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 69.2 bits (169), Expect = 6e-14
Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 14/174 (8%)
Query: 119 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKF 178
A R ++ +V L+++TL + + + + GA +F++ K
Sbjct: 38 ARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKV 97
Query: 179 DDRIP----------PQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRR 228
++ L+D+++ +++ +E L+ I FDL + Y+FL +
Sbjct: 98 EETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLK 157
Query: 229 YARCNRIQL----PLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKL 278
YA+ + L+ +A + SL ++ +A A +YLA ++ K
Sbjct: 158 YAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKF 211
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 60.8 bits (147), Expect = 4e-11
Identities = 29/184 (15%), Positives = 68/184 (36%), Gaps = 10/184 (5%)
Query: 119 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVD-LYLGKVVCSRLNLQLLGATAIFVSSK 177
++ + + L L A+ L+ L K +L+ L AT I++S K
Sbjct: 25 SKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCK 84
Query: 178 FDDRIPPQLSDLEYICSHTYS------IQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 231
++ P + + + +S ++ ++E ++++ + L + Y L +
Sbjct: 85 VEEC-PVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFH 143
Query: 232 CNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNK--LTPWNKTLEYYS 289
I L A I+ S + +LA A+L ++ ++ + ++
Sbjct: 144 DGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTD 203
Query: 290 EEKL 293
K+
Sbjct: 204 AFKV 207
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 49.7 bits (118), Expect = 3e-07
Identities = 24/175 (13%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 119 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKF 178
R + + E+ + ++ T+ A+ + + ++ N ++ +TA+F+++K
Sbjct: 28 LSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKV 87
Query: 179 DD---------------RIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSY 223
++ P + ++ ++L +E ++ +GF++ I +
Sbjct: 88 EEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPH 147
Query: 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSLI-RESDSKLACASLYLAQKMNK 277
+ + + R L + ++ SL + + + +AC ++LA K +
Sbjct: 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 202
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P-
TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1
a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 49.9 bits (118), Expect = 4e-07
Identities = 25/175 (14%), Positives = 68/175 (38%), Gaps = 16/175 (9%)
Query: 119 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKF 178
R + + ++ + ++ T+ A+ + + +R + A+F+++K
Sbjct: 35 LSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKV 94
Query: 179 DD---------------RIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSY 223
++ P + ++ +QDL +E ++ +GF+L I +
Sbjct: 95 EEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPH 154
Query: 224 RFLRRYARCNRIQLPLLTLARYILELSLMEYSL-IRESDSKLACASLYLAQKMNK 277
+ + + R L + ++ SL + ++ + +AC ++LA K +
Sbjct: 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSN 209
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 47.0 bits (111), Expect = 3e-06
Identities = 24/215 (11%), Positives = 65/215 (30%), Gaps = 18/215 (8%)
Query: 96 REAEFQIKDYLPFQSSTEKGNINAE---MRSVLVDWMVEVQETFELN--HETLYLAVKLV 150
R+ + + E + ++E F+ + A
Sbjct: 28 RKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYF 87
Query: 151 DLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDL-----EYICSHTYSIQDLKDM 205
+ + +++ T F++ K D+ E +++ + +
Sbjct: 88 KRFYLNNSVMEYHPRIIMLTCAFLACKVDE-FNVSSPQFVGNLRESPLGQEKALEQILEY 146
Query: 206 EIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLP-------LLTLARYILELSLMEYSLIR 258
E+ L+ + F L + YR + + + P L A L + + +
Sbjct: 147 ELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLL 206
Query: 259 ESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKL 293
+ S++A ++ + +T + E ++
Sbjct: 207 YTPSQIALTAILSSASRAGITMESYLSESLMLKEN 241
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 5e-06
Identities = 50/278 (17%), Positives = 93/278 (33%), Gaps = 61/278 (21%)
Query: 12 LTNSNNKKAESQNSRKT---VLKSKQTTVSEKKEKSLIEHFDK--EIQLEDKPK--VTGP 64
LT + + ++ T L T++ + KSL K + + +D P+ +T
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTTN 326
Query: 65 PSDVDDF------DKETWEDPLQVSCYAMH-----IFEYLKSREAEFQIKDYLPFQSSTE 113
P + TW++ V+C + L+ E F S
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA- 385
Query: 114 KGNINAEMRSVLVDWMVEVQETFELNHETLY---LAVK--------LVDLYLGKVVCSRL 162
+I + S++ W ++ + L+ L K + +YL ++
Sbjct: 386 --HIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-ELKVKLE 440
Query: 163 NL-----QLLGATAIFVSSKFDDRIPPQLSDLEYICSHT-YSIQDLKDME-IKLVTAIGF 215
N ++ I + DD IPP L Y SH + +++++ E + L +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 216 DLGIPLSYRFLRR------YARCNRIQLP--LLTLARY 245
D RFL + A + L L Y
Sbjct: 499 DF------RFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 6e-06
Identities = 50/299 (16%), Positives = 91/299 (30%), Gaps = 110/299 (36%)
Query: 28 TVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKPKVTGPPSDVDDFDKETWEDPL------- 80
+L+ TT+ + KE LI+++ + +P S L
Sbjct: 107 KLLQENDTTLVKTKE--LIKNYITARIMAKRPFDKKSNS------------ALFRAVGEG 152
Query: 81 QVSCYAMHIF-------EYLKSREAEFQI--KDYLPF-----QSSTEKGNINAEMRSV-- 124
A IF +Y + E + + Y + S E ++ +R+
Sbjct: 153 NAQLVA--IFGGQGNTDDYFE----ELRDLYQTYHVLVGDLIKFSAET--LSELIRTTLD 204
Query: 125 ----------LVDWMVEVQETFELNHETLYLA--------VKLVDL--YLGKVVCSRLNL 164
+++W+ T + YL + ++ L Y+ V L
Sbjct: 205 AEKVFTQGLNILEWLENPSNT----PDKDYLLSIPISCPLIGVIQLAHYV--VTAKLLGF 258
Query: 165 -------QLLGAT--------AIFVSS-----KFDDRIPPQLSDLEYI---CSHTYSIQD 201
L GAT A+ ++ F + ++ L +I C Y
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 202 LKDMEIKLVTAIGFDLGIP---LSYRFLRRY------ARCNRIQLPLLTLARYILELSL 251
L ++ G+P LS L + + N LP A +E+SL
Sbjct: 319 LPPSILEDSLENNE--GVPSPMLSISNLTQEQVQDYVNKTNS-HLP----AGKQVEISL 370
Score = 39.6 bits (92), Expect = 0.001
Identities = 42/222 (18%), Positives = 61/222 (27%), Gaps = 80/222 (36%)
Query: 25 SRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKPK---VTGPPSDVDDF---------- 71
+++ V Q V K L EI L + K V+GPP +
Sbjct: 345 TQEQV----QDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 72 -DKETWEDP------------LQVSC-YAMH----------IFEYLKSREAEFQIKD--- 104
+ P L V+ + H I + L F KD
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 105 --YLPFQSS---TEKGNINAEMRSVL----VDWMVEVQETFELNHETLYLAVKLVDLYLG 155
Y F S G+I+ + + V W Q F+ H ++D G
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ--FKATH--------ILDFGPG 507
Query: 156 KVVCSRL------NLQLLGATAIFVSSKFDDRIPPQLSDLEY 191
S L N G I + D D +Y
Sbjct: 508 GA--SGLGVLTHRNKDGTGVRVIVAGT-LDIN-----PDDDY 541
Score = 38.1 bits (88), Expect = 0.003
Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 61/189 (32%)
Query: 75 TWEDPLQVSCYAMHIFEY--LKSREAEFQIKDYLP--FQSSTEKGN-INAEMRSV--LVD 127
+WE A+ + + ++ EA + P + S E + + M S+ L
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 128 WMVE--VQETFELN-----HETLYLAVK-----LV------DLYLGKVVCSRLNLQLLGA 169
V+ V +T N + + +++ LV LY LNL L A
Sbjct: 347 EQVQDYVNKT---NSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-------GLNLTLRKA 396
Query: 170 TAIFVSSKFD-DRIP-----PQLSDLEY--ICS--HT-Y-------SIQDLKDMEIKLVT 211
A S D RIP + S + + S H+ +DL +
Sbjct: 397 KA---PSGLDQSRIPFSERKLKFS-NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 212 AIGFDLGIP 220
D+ IP
Sbjct: 453 K---DIQIP 458
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET:
BAX; 2.20A {Homo sapiens}
Length = 285
Score = 42.0 bits (98), Expect = 1e-04
Identities = 26/177 (14%), Positives = 62/177 (35%), Gaps = 16/177 (9%)
Query: 121 MRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDD 180
++ + + + E +L + + A + + ++ L+ T +F++SK ++
Sbjct: 42 LQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 101
Query: 181 RIPPQLSDLEYICSHTYSI--------------QDLKDMEIKLVTAIGFDLGIPLSYRFL 226
+ L + + + E L+ + L + YR L
Sbjct: 102 FGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPL 161
Query: 227 RRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNK--LTPW 281
+Y + + LL LA I+ + + +A A L++A + + W
Sbjct: 162 LQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQW 218
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase,
signaling protein,transfera cycle complex; HET: MES AGS;
2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Length = 293
Score = 30.7 bits (68), Expect = 0.46
Identities = 14/125 (11%), Positives = 39/125 (31%), Gaps = 9/125 (7%)
Query: 125 LVDWMVEVQETFELNHETLYLAVKLVDLY---LGKVVCSRLNLQLLGATAIFVSSKFDDR 181
+ ++ + + + L H L ++ +DL + L TA V++K
Sbjct: 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCD 136
Query: 182 IPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLS----YRFLRRYARCNRIQL 237
+ + +L +E + + + + ++ + +
Sbjct: 137 SFSTNAHYAKVGG--VRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQKQKKFVIDKN 194
Query: 238 PLLTL 242
L +L
Sbjct: 195 ALGSL 199
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.8
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 18 KKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQ 54
K E Q R L+ S+ E+ E K+++
Sbjct: 89 KWREEQRKR---LQELDAA-SKVMEQEWREKAKKDLE 121
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure,
transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus}
SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A*
1vqv_A
Length = 342
Score = 28.0 bits (63), Expect = 4.0
Identities = 8/47 (17%), Positives = 11/47 (23%)
Query: 3 QHEIDMSMNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHF 49
H +L A S + E E LI+
Sbjct: 5 HHHHHDITSLYKKAGSAAAVLEENLYFQGSFTMRLKELGEFGLIDLI 51
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 27.9 bits (63), Expect = 4.5
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 49 FDKEIQLEDKPKVTGPPSDVDDFDKETWEDP 79
+ I+ +P + D FDK ED
Sbjct: 271 LSRNIETPYEPPIQQGQGDTSQFDKYPEEDI 301
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Length = 787
Score = 28.0 bits (62), Expect = 4.8
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 42 EKSLIEHFDKEIQLEDKPKVTGPPSDVDDFD------KETWEDPLQVSCYAMHIFEYLKS 95
E ++ FDK Q+ K T ++ FD K E ++ C A + + +
Sbjct: 458 ELTINSGFDKNKQIGPK---TQNFEEMKSFDEFMKAYKAQMEYFVKHMCCADNCIDIAHA 514
Query: 96 REAEFQIKDYLPFQSSTEKGNINAEM 121
A LPF SS I
Sbjct: 515 ERA------PLPFLSSMVDNCIGKGK 534
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp
complex, tethering, transport protein; 1.7A {Homo
sapiens} PDB: 3kxc_C* 2cfh_C*
Length = 160
Score = 26.4 bits (58), Expect = 8.5
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 191 YICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRI 235
+ + I + +GF +G L RF + AR
Sbjct: 19 GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDE 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.377
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,294,830
Number of extensions: 247082
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 26
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)