Query psy1816
Match_columns 122
No_of_seqs 149 out of 654
Neff 3.6
Searched_HMMs 46136
Date Sat Aug 17 00:06:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00173 60S ribosomal protein 100.0 7.3E-34 1.6E-38 227.2 11.0 94 1-98 115-208 (213)
2 KOG0857|consensus 100.0 6.6E-29 1.4E-33 198.5 8.8 87 1-91 116-202 (212)
3 TIGR00279 L10e ribosomal prote 99.8 3.5E-21 7.6E-26 150.2 7.7 59 1-59 112-170 (172)
4 PRK04199 rpl10e 50S ribosomal 99.8 1.4E-20 3.1E-25 146.7 7.7 58 1-58 112-169 (172)
5 COG0197 RplP Ribosomal protein 99.7 1E-16 2.2E-21 122.6 6.1 48 5-54 90-137 (146)
6 PRK09203 rplP 50S ribosomal pr 99.6 7.3E-16 1.6E-20 115.6 7.2 52 1-54 83-134 (138)
7 cd01433 Ribosomal_L16_L10e Rib 99.6 1E-15 2.2E-20 109.8 6.4 51 1-52 62-112 (112)
8 CHL00044 rpl16 ribosomal prote 99.5 2.2E-14 4.8E-19 107.5 7.1 52 1-54 83-134 (135)
9 TIGR01164 rplP_bact ribosomal 99.4 1.8E-13 3.9E-18 101.3 5.9 45 1-47 82-126 (126)
10 PF00252 Ribosomal_L16: Riboso 99.4 1.1E-12 2.3E-17 97.2 6.1 52 1-53 82-133 (133)
11 KOG3422|consensus 99.0 3.4E-10 7.3E-15 91.7 6.1 54 1-55 124-177 (221)
12 PF07831 PYNP_C: Pyrimidine nu 84.5 2.5 5.4E-05 28.7 4.5 28 14-41 43-71 (75)
13 PF13282 DUF4070: Domain of un 65.3 5.8 0.00013 29.9 2.4 37 67-104 4-40 (146)
14 PF02391 MoaE: MoaE protein; 63.0 19 0.0004 26.0 4.6 33 9-41 77-109 (117)
15 smart00380 AP2 DNA-binding dom 58.4 13 0.00028 23.8 2.8 49 10-67 12-62 (64)
16 PF10138 vWA-TerF-like: vWA fo 57.5 39 0.00085 27.3 6.0 80 17-106 105-184 (200)
17 cd00233 VIP2 VIP2; A family of 57.4 18 0.0004 28.1 4.1 33 30-62 63-95 (201)
18 PF13533 Biotin_lipoyl_2: Biot 56.6 14 0.00029 22.8 2.6 14 14-27 23-36 (50)
19 cd00756 MoaE MoaE family. Memb 54.7 24 0.00053 25.9 4.1 39 9-47 69-111 (124)
20 smart00072 GuKc Guanylate kina 54.1 25 0.00055 26.1 4.2 44 56-103 48-91 (184)
21 PRK15052 D-tagatose-1,6-bispho 53.1 54 0.0012 29.5 6.6 62 20-85 15-91 (421)
22 PF00625 Guanylate_kin: Guanyl 53.1 67 0.0015 23.6 6.3 66 19-87 3-79 (183)
23 cd00992 PDZ_signaling PDZ doma 51.1 24 0.00053 22.0 3.2 28 13-40 42-72 (82)
24 TIGR02810 agaZ_gatZ D-tagatose 48.8 71 0.0015 28.7 6.7 75 20-103 14-103 (420)
25 PRK10678 moaE molybdopterin gu 47.7 44 0.00094 25.7 4.7 39 9-47 82-124 (150)
26 PRK15458 tagatose 6-phosphate 47.5 77 0.0017 28.6 6.7 63 20-86 18-95 (426)
27 PLN02390 molybdopterin synthas 45.9 45 0.00097 24.4 4.3 34 9-42 58-91 (111)
28 cd04883 ACT_AcuB C-terminal AC 44.2 41 0.00088 20.7 3.4 30 17-46 40-69 (72)
29 cd04906 ACT_ThrD-I_1 First of 42.4 29 0.00062 23.1 2.7 30 16-45 38-69 (85)
30 PRK14445 acylphosphatase; Prov 40.6 87 0.0019 21.5 4.9 40 9-52 33-72 (91)
31 PF13353 Fer4_12: 4Fe-4S singl 40.2 20 0.00044 24.7 1.7 56 30-86 68-123 (139)
32 PRK14737 gmk guanylate kinase; 39.8 81 0.0018 24.0 5.1 30 56-85 49-78 (186)
33 cd04885 ACT_ThrD-I Tandem C-te 39.1 41 0.00089 21.2 2.9 30 16-45 36-66 (68)
34 cd04909 ACT_PDH-BS C-terminal 37.3 23 0.0005 21.8 1.5 28 17-45 42-69 (69)
35 PRK06770 hypothetical protein; 37.1 16 0.00035 29.3 0.9 38 30-72 68-105 (180)
36 cd01801 Tsc13_N Ubiquitin-like 36.2 84 0.0018 20.5 4.1 51 28-88 22-75 (77)
37 COG0314 MoaE Molybdopterin con 35.4 62 0.0013 24.9 3.8 39 9-47 82-124 (149)
38 PF02749 QRPTase_N: Quinolinat 34.9 31 0.00067 23.4 1.9 15 13-27 55-69 (88)
39 PRK13605 endoribonuclease SymE 33.8 47 0.001 25.0 2.9 37 11-48 58-94 (113)
40 PRK14425 acylphosphatase; Prov 32.3 1.4E+02 0.0031 20.7 5.0 41 8-52 34-74 (94)
41 cd04882 ACT_Bt0572_2 C-termina 31.9 81 0.0017 18.7 3.3 26 17-44 38-63 (65)
42 PF04446 Thg1: tRNAHis guanyly 31.3 15 0.00033 27.7 -0.1 55 43-97 14-88 (135)
43 PRK14452 acylphosphatase; Prov 31.3 1.7E+02 0.0036 21.2 5.3 40 9-52 49-88 (107)
44 cd00018 AP2 DNA-binding domain 30.9 1E+02 0.0022 19.2 3.7 38 9-47 12-51 (61)
45 PRK14433 acylphosphatase; Prov 30.5 1.8E+02 0.0039 19.9 5.2 40 9-52 30-69 (87)
46 COG3040 Blc Bacterial lipocali 30.1 61 0.0013 26.0 3.1 33 70-102 118-150 (174)
47 PRK14738 gmk guanylate kinase; 30.0 1.4E+02 0.0031 22.7 5.1 65 17-81 12-83 (206)
48 PF13580 SIS_2: SIS domain; PD 30.0 61 0.0013 23.3 2.9 29 15-44 101-129 (138)
49 PTZ00488 Proteasome subunit be 29.9 1.2E+02 0.0026 24.4 4.8 42 31-72 192-236 (247)
50 PRK14424 acylphosphatase; Prov 29.6 2E+02 0.0042 20.2 5.3 40 9-52 36-75 (94)
51 PF10539 Dev_Cell_Death: Devel 29.5 44 0.00095 25.5 2.1 72 2-76 19-109 (130)
52 COG0504 PyrG CTP synthase (UTP 29.2 70 0.0015 29.7 3.6 50 32-82 305-354 (533)
53 PRK14444 acylphosphatase; Prov 29.0 1.7E+02 0.0037 20.2 4.9 40 9-52 33-72 (92)
54 PRK14421 acylphosphatase; Prov 28.9 1.5E+02 0.0032 21.1 4.6 40 9-52 33-72 (99)
55 PF08002 DUF1697: Protein of u 28.1 87 0.0019 23.1 3.5 82 13-104 38-121 (137)
56 PF08013 Tagatose_6_P_K: Tagat 28.0 1.8E+02 0.0039 26.3 5.9 50 21-73 19-73 (424)
57 TIGR00999 8a0102 Membrane Fusi 27.7 40 0.00086 25.8 1.6 14 14-27 3-16 (265)
58 PRK14423 acylphosphatase; Prov 27.2 2E+02 0.0044 19.8 5.0 41 8-52 33-73 (92)
59 PRK14440 acylphosphatase; Prov 27.2 2.1E+02 0.0045 19.7 5.0 41 8-52 31-71 (90)
60 PRK14493 putative bifunctional 26.1 1.1E+02 0.0023 25.2 4.0 38 9-46 215-256 (274)
61 PRK14442 acylphosphatase; Prov 26.1 2.2E+02 0.0049 19.6 5.1 40 9-52 33-72 (91)
62 PRK14441 acylphosphatase; Prov 24.9 2.3E+02 0.0049 19.6 4.9 40 9-52 34-73 (93)
63 PF00825 Ribonuclease_P: Ribon 24.8 1.6E+02 0.0034 20.5 4.2 51 19-69 43-101 (111)
64 PRK14451 acylphosphatase; Prov 24.7 2.4E+02 0.0052 19.4 5.5 41 8-52 31-71 (89)
65 PRK14436 acylphosphatase; Prov 24.6 2.4E+02 0.0052 19.5 5.0 40 9-52 33-72 (91)
66 PRK14438 acylphosphatase; Prov 24.4 2.3E+02 0.0051 19.4 4.9 40 9-52 32-71 (91)
67 PF03932 CutC: CutC family; I 24.2 92 0.002 24.9 3.2 63 37-99 41-103 (201)
68 PF13701 DDE_Tnp_1_4: Transpos 24.1 1.3E+02 0.0027 26.5 4.2 55 11-72 185-239 (448)
69 TIGR00188 rnpA ribonuclease P 23.6 1.6E+02 0.0034 20.5 4.0 36 33-69 63-98 (105)
70 PF10298 WhiA_N: WhiA N-termin 23.3 2E+02 0.0043 19.2 4.3 43 17-61 22-64 (86)
71 PRK14435 acylphosphatase; Prov 23.0 2.6E+02 0.0056 19.2 5.4 41 8-52 30-70 (90)
72 PRK14428 acylphosphatase; Prov 22.5 2.5E+02 0.0053 19.9 4.8 40 9-52 37-76 (97)
73 PRK00396 rnpA ribonuclease P; 22.4 1.9E+02 0.0041 21.5 4.4 39 32-71 68-106 (130)
74 PRK11572 copper homeostasis pr 21.8 1.7E+02 0.0036 24.4 4.3 55 46-100 51-105 (248)
75 cd00136 PDZ PDZ domain, also c 21.8 1.1E+02 0.0023 18.5 2.5 15 13-27 29-43 (70)
76 PF14097 SpoVAE: Stage V sporu 21.6 2.3E+02 0.005 22.9 4.9 49 19-74 1-50 (180)
77 cd03750 proteasome_alpha_type_ 21.0 1.7E+02 0.0036 22.7 4.0 42 30-71 182-226 (227)
78 COG1566 EmrA Multidrug resista 20.9 82 0.0018 27.3 2.4 12 14-25 74-85 (352)
79 cd04908 ACT_Bt0572_1 N-termina 20.8 2.2E+02 0.0047 17.5 4.3 25 19-45 40-64 (66)
80 PRK06078 pyrimidine-nucleoside 20.6 1.1E+02 0.0024 27.4 3.2 29 13-41 386-414 (434)
81 cd01674 Homoaconitase_Swivel H 20.6 1E+02 0.0022 23.6 2.6 58 8-76 36-95 (129)
82 COG4021 Uncharacterized conser 20.3 58 0.0013 27.4 1.3 56 41-96 13-89 (249)
83 PRK14450 acylphosphatase; Prov 20.1 3E+02 0.0065 18.8 5.1 40 9-52 31-71 (91)
No 1
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=100.00 E-value=7.3e-34 Score=227.17 Aligned_cols=94 Identities=53% Similarity=0.941 Sum_probs=90.8
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIIS 80 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g 80 (122)
||+|||+|+||||||++||+||||++++++.++|+||||+|++|||++|+|+++++||||+|+++||++|+++|+|+
T Consensus 115 Mr~gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~~KlP~~~kIv~~~~wgft~~~~~~~~~~~~~~~~~--- 191 (213)
T PTZ00173 115 MRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAKYKFPGRQKIVVSNKWGFTNYTREEYQKLRAEGKLI--- 191 (213)
T ss_pred cccCCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhcccCCCeEEEEEecccCccccCHHHHHHHHHCCeEe---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCCCch
Q psy1816 81 TPKSVFFPIFQGSPTLSE 98 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (122)
+||++++++.-.-.|+.
T Consensus 192 -~~g~~~~~~~~~g~l~~ 208 (213)
T PTZ00173 192 -QDGVHVKLISPKGPLTK 208 (213)
T ss_pred -cCCceEEEeCCCCChhh
Confidence 89999999988777764
No 2
>KOG0857|consensus
Probab=99.96 E-value=6.6e-29 Score=198.51 Aligned_cols=87 Identities=67% Similarity=1.021 Sum_probs=84.5
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIIS 80 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g 80 (122)
||+|||||.|+||||++||+||||++++++.++++|||+||++||||+|+|+++++||||+|++|||++|+.+++++
T Consensus 116 mrga~gkp~G~varV~iGqvi~Svrtk~~nkeh~ieal~rak~kfpG~qki~vs~kwgftk~~~def~~~~~~~~~~--- 192 (212)
T KOG0857|consen 116 MRGAFGKPQGTVARVHIGQVIMSVRTKLQNKEHVIEALRRAKFKFPGRQKIVVSKKWGFTKFDRDEFEDLRARKRLE--- 192 (212)
T ss_pred ccccccCccceEEEEEcCceEEEeecCcccHHHHHHHHHhccccCCCceeEEeeeecCccccchhHHHHHHhhccee---
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeec
Q psy1816 81 TPKSVFFPIFQ 91 (122)
Q Consensus 81 ~~~~~~~~~~~ 91 (122)
+||++++++.
T Consensus 193 -~~g~~vk~~~ 202 (212)
T KOG0857|consen 193 -PDGCGVKFIP 202 (212)
T ss_pred -ccCCceeeec
Confidence 7888888864
No 3
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=99.84 E-value=3.5e-21 Score=150.16 Aligned_cols=59 Identities=53% Similarity=0.762 Sum_probs=57.6
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcc
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGF 59 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gF 59 (122)
||++||+|++|||||++|||||||+++++++++|+|||++|++|||++|+|+++++|+.
T Consensus 112 Mr~gkG~p~~wvArVk~Gqiifei~~~~~~~~~AkeAlr~A~~KLP~~~kiv~~~~~~~ 170 (172)
T TIGR00279 112 MRGAFGKPVGTAARVKIGQKIFSVWTKPSNFDVAKEALRRAAMKFPVPCKIVIEKGWEL 170 (172)
T ss_pred cccCCCCccEEEEEECcCCEEEEEEeecCCHHHHHHHHHHHhccCCCcEEEEEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999984
No 4
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=99.83 E-value=1.4e-20 Score=146.68 Aligned_cols=58 Identities=48% Similarity=0.615 Sum_probs=55.8
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCc
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWG 58 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~g 58 (122)
||+|||+|++|||+|++|||||||+++.+++++|+|||++|++|||++|+|+++++.+
T Consensus 112 Mr~akG~p~~wva~Vk~G~ilfei~~~~~~~~~akeAlr~a~~KLP~k~kiv~~~~~~ 169 (172)
T PRK04199 112 MRLAFGKPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAAMKLPTPCRIVVEKGKE 169 (172)
T ss_pred cccCCCCccEEEEEECcCCEEEEEEecCCCHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999988754
No 5
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1e-16 Score=122.60 Aligned_cols=48 Identities=35% Similarity=0.525 Sum_probs=43.0
Q ss_pred CCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q psy1816 5 YGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS 54 (122)
Q Consensus 5 FGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis 54 (122)
-|+|+||||||+|||+||||+++++ +.|+||||+|++|||++|+++++
T Consensus 90 kG~pegwaArVkpG~vlfei~g~~e--~~A~EAlr~Aa~KLP~~~~~v~~ 137 (146)
T COG0197 90 KGKPEGWAARVKPGRVLFEIAGVPE--ELAREALRRAAAKLPVKTKFVIR 137 (146)
T ss_pred CCCccEEEEEecCCcEEEEEecCcH--HHHHHHHHHHhhcCCCceEEEEE
Confidence 4999999999999999999999955 55999999999999999666555
No 6
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=99.63 E-value=7.3e-16 Score=115.57 Aligned_cols=52 Identities=29% Similarity=0.288 Sum_probs=49.5
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS 54 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis 54 (122)
|...||+|++|||||++||+|||+++ .+.+.|++||++|++|||++|+|+..
T Consensus 83 MGkGKG~~~~~varVk~G~iifEi~~--~~~~~a~~al~~a~~KLP~~~kii~~ 134 (138)
T PRK09203 83 MGKGKGSPEYWVAVVKPGRILFEIAG--VSEELAREALRLAAAKLPIKTKFVKR 134 (138)
T ss_pred ccCCCCCCcEEEEEECCCCEEEEEeC--CCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 78889999999999999999999998 48999999999999999999999975
No 7
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=99.61 E-value=1e-15 Score=109.84 Aligned_cols=51 Identities=45% Similarity=0.577 Sum_probs=48.5
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
|++.||+|++|||||++||+|||+.+++. .+.|++||++|++|||++|+|+
T Consensus 62 MGkGKG~~~~~~a~v~~G~iifEi~~~~~-~~~~~~alk~a~~Klp~~~k~i 112 (112)
T cd01433 62 MGKGKGKPEGWVARVKPGQILFEVRGVPE-EEVAKEALRRAAKKLPIKTKIV 112 (112)
T ss_pred cCCCCCCccEEEEEECCCCEEEEEeCcCc-HHHHHHHHHHhhccCCCcEEEC
Confidence 99999999999999999999999999854 8999999999999999999985
No 8
>CHL00044 rpl16 ribosomal protein L16
Probab=99.53 E-value=2.2e-14 Score=107.50 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=47.5
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS 54 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis 54 (122)
|=.-||+|++|||+|++||+|||+.+. +.+.|++||++|++|||++|+|+.+
T Consensus 83 MGkGKG~~~~~va~V~~G~ilfEi~g~--~~~~ak~al~~a~~KLP~k~~~v~~ 134 (135)
T CHL00044 83 MGSGKGSPEYWVAVVKPGRILYEMGGV--SETIARAAIKIAAYKMPIKTQFIIS 134 (135)
T ss_pred ccCCCCCccEEEEEECCCcEEEEEeCC--CHHHHHHHHHHHhhcCCCcEEEEec
Confidence 444599999999999999999999987 5689999999999999999999965
No 9
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=99.44 E-value=1.8e-13 Score=101.34 Aligned_cols=45 Identities=29% Similarity=0.292 Sum_probs=42.8
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPG 47 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPg 47 (122)
|...||+|++|||||++||+|||+.+ .+.+.|++||++|++|||+
T Consensus 82 MGkGKG~~~~~varV~~G~ilfEi~~--~~~~~a~~al~~a~~KLP~ 126 (126)
T TIGR01164 82 MGKGKGNPEYWVAVVKPGKILFEIAG--VPEEVAREAFRLAASKLPI 126 (126)
T ss_pred ccCCCCCCCEEEEEECCCCEEEEEeC--CCHHHHHHHHHHHHhcCCC
Confidence 77889999999999999999999998 4999999999999999995
No 10
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=99.37 E-value=1.1e-12 Score=97.21 Aligned_cols=52 Identities=35% Similarity=0.348 Sum_probs=46.4
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEE
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYV 53 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvi 53 (122)
|-.--|+|++|||+|++||+|||+.++ .+.+.|++||++|++|||++++|+.
T Consensus 82 MG~GKG~~~~~~a~V~~G~iifEi~~~-v~~~~a~~alk~a~~KLP~~~~~v~ 133 (133)
T PF00252_consen 82 MGKGKGKIDHWVARVKPGQIIFEIGGK-VNEEEAKEALKRAAKKLPIKTKFVS 133 (133)
T ss_dssp SSSSSCEEEEEEEEESTTEEEEEEESG-SCHHHHHHHHHHHHHTSSSCEEEE-
T ss_pred hccCCCCccEEEEEECCCcEEEEECCc-CCHHHHHHHHHHHHhhCCCCEEEeC
Confidence 455679999999999999999999772 3899999999999999999999983
No 11
>KOG3422|consensus
Probab=99.05 E-value=3.4e-10 Score=91.72 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 55 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~ 55 (122)
|=+--|.|++|||||++|+|||||.|+ .+++.|++||..|++|||++++||+..
T Consensus 124 MG~GKGa~d~wva~V~~GrIl~EmgG~-~~~~~Ar~al~~aa~klp~~~efVs~~ 177 (221)
T KOG3422|consen 124 MGGGKGAIDHWVARVKAGRILFEMGGD-VEEEEARQALLQAAHKLPFKYEFVSEE 177 (221)
T ss_pred ccCCCCCcceeEEEecCCcEEEEeCCc-ccHHHHHHHHHHHHhcCCccEEEeeHh
Confidence 445568899999999999999999996 799999999999999999999999763
No 12
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=84.53 E-value=2.5 Score=28.68 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=21.7
Q ss_pred EeeCCCeEEEEEeCCCC-HHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDKF-KPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~~-~e~AkEALRRA 41 (122)
+|+.|++|++|....+. .+.|.+.|+.|
T Consensus 43 ~V~~Gd~l~~i~~~~~~~~~~a~~~~~~a 71 (75)
T PF07831_consen 43 RVEKGDPLATIYANDEARLEEAVERLRAA 71 (75)
T ss_dssp EEBTTSEEEEEEESSSSHHHHHHHHHHHH
T ss_pred EECCCCeEEEEEcCChHHHHHHHHHHHhC
Confidence 68999999999999765 56666665554
No 13
>PF13282 DUF4070: Domain of unknown function (DUF4070)
Probab=65.29 E-value=5.8 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHhhhhcCceeecCCCCceeeeeecCCCCCchhHHhhc
Q psy1816 67 YETLRDQNRTSIISTPKSVFFPIFQGSPTLSEEEIIES 104 (122)
Q Consensus 67 ~~~~~~e~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 104 (122)
|.+|++||+|+.+.+.|.+. -.+.=-|+++.|||++.
T Consensus 4 ~~RL~~EGRLl~~~~gd~~~-~~~NFiP~m~~e~L~~g 40 (146)
T PF13282_consen 4 WDRLEREGRLLGDASGDNTD-SSTNFIPKMPREELADG 40 (146)
T ss_pred HHHHHHhcCCCCCcCccccc-cccccccCCCHHHHHHH
Confidence 78999999999544444321 22222478999998763
No 14
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=63.02 E-value=19 Score=26.00 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=29.2
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHh
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRA 41 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRA 41 (122)
.+..-++++|+.++-|.+-..|...|-+|++-+
T Consensus 77 ~HR~G~l~vGe~~v~V~vsa~hR~eaf~A~~~~ 109 (117)
T PF02391_consen 77 VHRVGRLKVGEPIVLVAVSAPHRKEAFEACEYI 109 (117)
T ss_dssp EEEEEEEETTSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeeCCCCCCCeEEEEEEecCCHHHHHHHHHHH
Confidence 467889999999999999888999999998865
No 15
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=58.40 E-value=13 Score=23.79 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=33.5
Q ss_pred eeEEEeeC--CCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHH
Q psy1816 10 GTVARVNI--GQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEY 67 (122)
Q Consensus 10 G~vARVkp--GqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~ 67 (122)
.|.|+|.. +.....+.. -...+.|..|..+|+.++=+. ...++|....|
T Consensus 12 kw~A~I~~~~~~k~~~lG~-f~t~eeAa~Ayd~a~~~~~g~--------~a~~Nf~~~~y 62 (64)
T smart00380 12 KWVAEIRDPSKGKRVWLGT-FDTAEEAARAYDRAAFKFRGR--------SARLNFPNSLY 62 (64)
T ss_pred eEEEEEEecCCCcEEecCC-CCCHHHHHHHHHHHHHHhcCC--------ccccCCCCccC
Confidence 49999986 555555533 457889999999999988542 33456666555
No 16
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=57.50 E-value=39 Score=27.26 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=53.5
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecCCCCceeeeeecCCCCC
Q psy1816 17 IGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIISTPKSVFFPIFQGSPTL 96 (122)
Q Consensus 17 pGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~~~~~~~~~~~~ 96 (122)
|--|||--.|-..+...++++|+.| .++|.-+.++---+..|-=+.+ ...| .||.+ |-+.+--+.--+.+
T Consensus 105 P~~VlFiTDG~~~~~~~~~~~i~~a-s~~pifwqFVgiG~~~f~fL~k--LD~l--~gR~v-----DNa~Ff~~~d~~~l 174 (200)
T PF10138_consen 105 PALVLFITDGGPDDRRAIEKLIREA-SDEPIFWQFVGIGDSNFGFLEK--LDDL--AGRVV-----DNAGFFAIDDIDEL 174 (200)
T ss_pred CeEEEEEecCCccchHHHHHHHHhc-cCCCeeEEEEEecCCcchHHHH--hhcc--CCccc-----CCcCeEecCCcccC
Confidence 5568888888877888899999998 8999999998654444311111 1112 45554 55555445555689
Q ss_pred chhHHhhccC
Q psy1816 97 SEEEIIESSN 106 (122)
Q Consensus 97 ~~~~~~~~~~ 106 (122)
|.+|+.+..-
T Consensus 175 sD~eLy~~LL 184 (200)
T PF10138_consen 175 SDEELYDRLL 184 (200)
T ss_pred CHHHHHHHHH
Confidence 9999887543
No 17
>cd00233 VIP2 VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative insecticidal proteins (VIPs) possesses high specificity against the major insect pest, corn rootworms, and belongs to a classs of binary toxins and regulators of biological pathways distinct from classical A-B toxins. A novel family of insecticidal ADP-ribosyltransferses were isolated from Bacillus cereus during vegetative growth, where VIP1 likely targets insect cells and VIP2 ribosylates actin. VIP2 shares significant sequence similarity with enzymatic components of other binary toxins, Clostridium botulinum C2 toxin, C. perfringens iota toxin, C. piroforme toxin, C. piroforme toxin and C. difficile toxin.
Probab=57.38 E-value=18 Score=28.07 Aligned_cols=33 Identities=24% Similarity=0.064 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHhhccCCCceEEEEeCCCccccc
Q psy1816 30 FKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKY 62 (122)
Q Consensus 30 ~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~ 62 (122)
......+.|..|-.|+|.+.-|++-|+-+...|
T Consensus 63 ~l~~~I~~Ldsal~K~~~~~~i~vYRg~~~~~~ 95 (201)
T cd00233 63 ELDKQIENIDSAFKKKPIPENITVYRGVDMTYL 95 (201)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCchhhc
Confidence 356778899999999998888888888877664
No 18
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=56.59 E-value=14 Score=22.81 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=12.1
Q ss_pred EeeCCCeEEEEEeC
Q psy1816 14 RVNIGQPIMSVRSS 27 (122)
Q Consensus 14 RVkpGqVIfeVr~~ 27 (122)
.|+.|++|+.+...
T Consensus 23 ~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 23 QVKKGDVLLVLDSP 36 (50)
T ss_pred EEcCCCEEEEECcH
Confidence 68999999999754
No 19
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=54.68 E-value=24 Score=25.92 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=31.9
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHH----hhccCCC
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRR----AKFKFPG 47 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRR----Ak~KLPg 47 (122)
.+..-++++|+.++-|.+-..|...|-+|++- -|...|.
T Consensus 69 ~HR~G~l~vGe~~v~i~v~a~hR~~af~A~~~~id~lK~~~Pi 111 (124)
T cd00756 69 IHRVGRLPPGEAIVLVAVSSPHRKEAFEACEFLIDRLKHRAPI 111 (124)
T ss_pred EEEEcccCCCCEEEEEEEecCCHHHHHHHHHHHHHHHHhhCCE
Confidence 46677899999999999988899999888775 4666676
No 20
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=54.05 E-value=25 Score=26.09 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=30.6
Q ss_pred CCcccccCHHHHHhhhhcCceeecCCCCceeeeeecCCCCCchhHHhh
Q psy1816 56 KWGFTKYDREEYETLRDQNRTSIISTPKSVFFPIFQGSPTLSEEEIIE 103 (122)
Q Consensus 56 ~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 103 (122)
+..|.-.++++|+++.++|.++..+...| .+-|.+--+-+++++
T Consensus 48 g~dy~fvs~~ef~~~i~~g~fve~~~~~g----~~YGt~~~~i~~~~~ 91 (184)
T smart00072 48 GVDYHFVSREEFEDDIKSGLFLEWGEYSG----NYYGTSKETIRQVAE 91 (184)
T ss_pred CceEEECCHHHHHHHHHcCCeEEEEEEcC----cCcccCHHHHHHHHH
Confidence 34566679999999999999997777666 244555444444443
No 21
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=53.09 E-value=54 Score=29.50 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCHHHHHHHHHHhhcc-CCCceEEEEe-----CCCcccccCHHHHHhhhhc---------CceeecCCCCc
Q psy1816 20 PIMSVRSSDKFKPAVIEALRRAKFK-FPGRQKIYVS-----KKWGFTKYDREEYETLRDQ---------NRTSIISTPKS 84 (122)
Q Consensus 20 VIfeVr~~~~~~e~AkEALRRAk~K-LPgr~RIvis-----~~~gFT~~~~~e~~~~~~e---------~~l~~~g~~~~ 84 (122)
=|+||+ +.|.....-||++|+.+ .|. -|.-+ ...|||.++..+|.+.+.+ .+++.-|.+-|
T Consensus 15 Gi~SVC--sahp~VieAAl~~a~~~~~pv--LiEAT~NQVdq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlG 90 (421)
T PRK15052 15 GICSVC--SAHPLVIEAALAFDLNSTRKV--LIEATSNQVNQFGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLG 90 (421)
T ss_pred ceeeEC--CCCHHHHHHHHHHHhhcCCcE--EEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCC
Confidence 378887 44766666669999874 443 23322 4569999999999999877 46776666666
Q ss_pred e
Q psy1816 85 V 85 (122)
Q Consensus 85 ~ 85 (122)
-
T Consensus 91 P 91 (421)
T PRK15052 91 P 91 (421)
T ss_pred C
Confidence 5
No 22
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=53.05 E-value=67 Score=23.65 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=38.5
Q ss_pred CeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe---C--------CCcccccCHHHHHhhhhcCceeecCCCCceee
Q psy1816 19 QPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS---K--------KWGFTKYDREEYETLRDQNRTSIISTPKSVFF 87 (122)
Q Consensus 19 qVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis---~--------~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~~~ 87 (122)
++|.-+.-...-.....++|.. .+|.+...+++ + +-.|.-.++++|.++.+.|.++..+..+|-+.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~---~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~Y 79 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ---EFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYY 79 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH---HSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH---hcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhh
Confidence 3444443222335555555544 45544433333 2 33466689999999999999998888776543
No 23
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=51.15 E-value=24 Score=21.95 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=17.5
Q ss_pred EEeeCCCeEEEEEeCCC---CHHHHHHHHHH
Q psy1816 13 ARVNIGQPIMSVRSSDK---FKPAVIEALRR 40 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~---~~e~AkEALRR 40 (122)
|.+++|++|++|.+.+- +.+.+..+|+.
T Consensus 42 ~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~ 72 (82)
T cd00992 42 GGLRVGDRILEVNGVSVEGLTHEEAVELLKN 72 (82)
T ss_pred CCCCCCCEEEEECCEEcCccCHHHHHHHHHh
Confidence 46778888888876633 44455555554
No 24
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=48.79 E-value=71 Score=28.75 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=49.3
Q ss_pred eEEEEEeCCCCHHHHHHHHHHhhcc-CCCceEEEEe-----CCCcccccCHHHHHhhhhc---------CceeecCCCCc
Q psy1816 20 PIMSVRSSDKFKPAVIEALRRAKFK-FPGRQKIYVS-----KKWGFTKYDREEYETLRDQ---------NRTSIISTPKS 84 (122)
Q Consensus 20 VIfeVr~~~~~~e~AkEALRRAk~K-LPgr~RIvis-----~~~gFT~~~~~e~~~~~~e---------~~l~~~g~~~~ 84 (122)
-|++|+ +.|.....-||++|+.+ .|. -|.-+ ...|||.++..+|.+.+.+ .+++.-|.+-|
T Consensus 14 gI~sVC--sahp~VieAAl~~a~~~~~pv--LiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlG 89 (420)
T TIGR02810 14 GIYSVC--SAHPLVLEAAIRRARASGTPV--LIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLG 89 (420)
T ss_pred eEEEEC--CCCHHHHHHHHHHHhhcCCcE--EEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCC
Confidence 477887 44767666669999874 343 23322 4569999999999999877 46676666665
Q ss_pred eeeeeecCCCCCchhHHhh
Q psy1816 85 VFFPIFQGSPTLSEEEIIE 103 (122)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ 103 (122)
-+.-- .|+.+|-.+
T Consensus 90 Pn~Wq-----~lpa~eAM~ 103 (420)
T TIGR02810 90 PNPWQ-----HLPADEAMA 103 (420)
T ss_pred Ccccc-----CCCHHHHHH
Confidence 53111 566665544
No 25
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=47.67 E-value=44 Score=25.72 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=31.8
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHH----HhhccCCC
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALR----RAKFKFPG 47 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALR----RAk~KLPg 47 (122)
.+.+-+|.+|+.++-|.+-..|...|-+|++ +-|...|+
T Consensus 82 ~HR~G~l~~Ge~~v~Vav~s~HR~~Af~A~~~~id~lK~~vPI 124 (150)
T PRK10678 82 IHRVGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPF 124 (150)
T ss_pred EEeEecccCCCEEEEEEEECCCHHHHHHHHHHHHHHHhhcCCe
Confidence 4678899999999999998899999999855 44555665
No 26
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=47.55 E-value=77 Score=28.58 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=44.4
Q ss_pred eEEEEEeCCCCHHHHHHHHHHhhcc-CCCceEEEEe-----CCCcccccCHHHHHhhhhc---------CceeecCCCCc
Q psy1816 20 PIMSVRSSDKFKPAVIEALRRAKFK-FPGRQKIYVS-----KKWGFTKYDREEYETLRDQ---------NRTSIISTPKS 84 (122)
Q Consensus 20 VIfeVr~~~~~~e~AkEALRRAk~K-LPgr~RIvis-----~~~gFT~~~~~e~~~~~~e---------~~l~~~g~~~~ 84 (122)
-|++|+ +.|.-...-||++|+.+ .|. -|.-+ ...|||.++..+|...+.+ .+++.-|.+-|
T Consensus 18 gI~sVC--sahp~VieAAl~~a~~~~~pv--LiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLG 93 (426)
T PRK15458 18 GIYAVC--SAHPLVLEAAIRYALANDSPL--LIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLG 93 (426)
T ss_pred eEEEec--CCCHHHHHHHHHHHhhcCCcE--EEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCC
Confidence 477887 44766666669999874 332 23322 4569999999999999877 47777777766
Q ss_pred ee
Q psy1816 85 VF 86 (122)
Q Consensus 85 ~~ 86 (122)
-|
T Consensus 94 Pn 95 (426)
T PRK15458 94 PN 95 (426)
T ss_pred Cc
Confidence 54
No 27
>PLN02390 molybdopterin synthase catalytic subunit
Probab=45.86 E-value=45 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=29.0
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhh
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAK 42 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk 42 (122)
.+..-+|++|+.++-|.+-..|...|-+|++-+-
T Consensus 58 ~HR~G~l~vge~~v~v~v~s~HR~~Af~A~~~~i 91 (111)
T PLN02390 58 AHRLGPVPVGETSVFVAVSSVHRADALDACKFLI 91 (111)
T ss_pred EEeeecccCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 4677889999999999998889999998877653
No 28
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.18 E-value=41 Score=20.66 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHhhccCC
Q psy1816 17 IGQPIMSVRSSDKFKPAVIEALRRAKFKFP 46 (122)
Q Consensus 17 pGqVIfeVr~~~~~~e~AkEALRRAk~KLP 46 (122)
.|..++.++....+.+.++++|+.+.+++=
T Consensus 40 ~~~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 40 EDNKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCeEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 456556666544567799999999988763
No 29
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.44 E-value=29 Score=23.12 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=23.4
Q ss_pred eCCCeEEEEEeCC--CCHHHHHHHHHHhhccC
Q psy1816 16 NIGQPIMSVRSSD--KFKPAVIEALRRAKFKF 45 (122)
Q Consensus 16 kpGqVIfeVr~~~--~~~e~AkEALRRAk~KL 45 (122)
..+++++.+.+.+ +|.+.++++|+.+++++
T Consensus 38 ~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~ 69 (85)
T cd04906 38 KDAHIFVGVSVANGAEELAELLEDLKSAGYEV 69 (85)
T ss_pred CeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCe
Confidence 4567888777765 67889999999988864
No 30
>PRK14445 acylphosphatase; Provisional
Probab=40.61 E-value=87 Score=21.52 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=29.3
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||--..-|+|-+.+.+.++ +.++|..+-.+-|...+|.
T Consensus 33 ~G~V~N~~dG~Vei~~qG~~~----~l~~f~~~l~~gP~~a~V~ 72 (91)
T PRK14445 33 SGWVRNLPDGTVEIEAQGSSG----MIDELIKQAERGPSRSSVT 72 (91)
T ss_pred EEEEEECCCCeEEEEEEECHH----HHHHHHHHHHhCCCCcEEE
Confidence 589999999999999998633 3455555555778777663
No 31
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=40.16 E-value=20 Score=24.72 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecCCCCcee
Q psy1816 30 FKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIISTPKSVF 86 (122)
Q Consensus 30 ~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~~ 86 (122)
+.+.+.+.++.++.+++ ...++.+.+..+..+....+.++...=.+..||..+.-+
T Consensus 68 ~~~~l~~i~~~~k~~~~-~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~~~~~~~ 123 (139)
T PF13353_consen 68 NYDELLEILKYIKEKFP-KKIIILTNGYTLDELLDELIEELLDEIDVSVDGPFDENK 123 (139)
T ss_dssp SHHHHHHHHHHHHHTT--SEEEEEETT--HHHHHHHHHHHHHHTESEEEE---SSHH
T ss_pred cHhHHHHHHHHHHHhCC-CCeEEEECCCchhHHHhHHHHhccCccEEEEEEechhhc
Confidence 36888999999999999 666777777777776655566666665566566555433
No 32
>PRK14737 gmk guanylate kinase; Provisional
Probab=39.82 E-value=81 Score=24.01 Aligned_cols=30 Identities=7% Similarity=-0.119 Sum_probs=24.5
Q ss_pred CCcccccCHHHHHhhhhcCceeecCCCCce
Q psy1816 56 KWGFTKYDREEYETLRDQNRTSIISTPKSV 85 (122)
Q Consensus 56 ~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~ 85 (122)
+..|.-.++++|+.++++|.++-.+...|-
T Consensus 49 G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~ 78 (186)
T PRK14737 49 GKTYFFLTIEEFKKGIADGEFLEWAEVHDN 78 (186)
T ss_pred CceeEeCCHHHHHHHHHcCCeEEEEEECCe
Confidence 456788999999999999999977665553
No 33
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.07 E-value=41 Score=21.24 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=22.8
Q ss_pred eCCCeEEEEEeCC-CCHHHHHHHHHHhhccC
Q psy1816 16 NIGQPIMSVRSSD-KFKPAVIEALRRAKFKF 45 (122)
Q Consensus 16 kpGqVIfeVr~~~-~~~e~AkEALRRAk~KL 45 (122)
+.+++.+.+.+.+ .|.+..+++|+.+++++
T Consensus 36 ~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 36 DEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4566777777764 58888899999988864
No 34
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.32 E-value=23 Score=21.84 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHhhccC
Q psy1816 17 IGQPIMSVRSSDKFKPAVIEALRRAKFKF 45 (122)
Q Consensus 17 pGqVIfeVr~~~~~~e~AkEALRRAk~KL 45 (122)
.|.+++.++.. .|.+.++++|+.+++++
T Consensus 42 ~~~~~i~v~~~-~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 42 GGILRISFKTQ-EDRERAKEILKEAGYEV 69 (69)
T ss_pred cEEEEEEECCH-HHHHHHHHHHHHcCCcC
Confidence 45567777753 37899999999998763
No 35
>PRK06770 hypothetical protein; Provisional
Probab=37.11 E-value=16 Score=29.34 Aligned_cols=38 Identities=32% Similarity=0.654 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhh
Q psy1816 30 FKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRD 72 (122)
Q Consensus 30 ~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~ 72 (122)
.++....|+..-. +||+.-.++|||+..+.+..+.|+.
T Consensus 68 tE~~ii~~MH~Mt-----HQKV~A~~KwG~~~mT~enI~~l~~ 105 (180)
T PRK06770 68 TEEEIITAMHKMT-----HQKVKADEKWGFIEMTQENIEKLKD 105 (180)
T ss_pred CHHHHHHHHHHHH-----hhhhhhhcccceEecCHHHHHHHHH
Confidence 4556666665554 5788889999999999999998864
No 36
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=36.24 E-value=84 Score=20.50 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHhhccC-CCceEEEEeCCCcccccCHHHHHhhhhcCceeecCCCCc--eeee
Q psy1816 28 DKFKPAVIEALRRAKFKF-PGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIISTPKS--VFFP 88 (122)
Q Consensus 28 ~~~~e~AkEALRRAk~KL-Pgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g~~~~--~~~~ 88 (122)
.......++++..+..++ |-|+|+....+.. -|..+..|...|..+| +|+|
T Consensus 22 ~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~----------~L~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 22 DATIADLKKLIAKSSPQLTVNRQSLRLEPKGK----------SLKDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CccHHHHHHHHHHHcCCCCcceeEEEeCCCCc----------ccCCcccHhhcCCCCCCEEEEe
Confidence 345677888888876555 6888887432222 2334444555666666 6665
No 37
>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
Probab=35.41 E-value=62 Score=24.89 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.3
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHh----hccCCC
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRA----KFKFPG 47 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRA----k~KLPg 47 (122)
.+..-+++||+.++-|.+-..|...|-+|++-+ |...|.
T Consensus 82 ~HriG~l~~Ge~~v~v~v~s~HR~~Af~a~~~~id~lK~~aPi 124 (149)
T COG0314 82 IHRIGELKIGEAIVLVGVASAHRKEAFEACEYIIDRLKHRAPI 124 (149)
T ss_pred EEeeccccCCCcEEEEEEecccHHHHHHHHHHHHHHHHhhCCc
Confidence 467778999999999999888999998887755 455554
No 38
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=34.86 E-value=31 Score=23.37 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=13.2
Q ss_pred EEeeCCCeEEEEEeC
Q psy1816 13 ARVNIGQPIMSVRSS 27 (122)
Q Consensus 13 ARVkpGqVIfeVr~~ 27 (122)
.+|.+|++|+++.|.
T Consensus 55 ~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 55 DRVEPGDVILEIEGP 69 (88)
T ss_dssp -EEETTCEEEEEEEE
T ss_pred CCccCCcEEEEEEeC
Confidence 478999999999996
No 39
>PRK13605 endoribonuclease SymE; Provisional
Probab=33.84 E-value=47 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=28.4
Q ss_pred eEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCc
Q psy1816 11 TVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGR 48 (122)
Q Consensus 11 ~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr 48 (122)
..-+|.+|++|++..........-.+.|+.++ ||..+
T Consensus 58 V~V~V~~G~LVIt~~~~~~~~~el~~~l~~v~-~~s~~ 94 (113)
T PRK13605 58 VDVRVMEGCIVLTAQPPAAEESELMQSLRQVC-KLSAR 94 (113)
T ss_pred EEEEEeCCEEEEEeCCCCcccHHHHHHHHHHH-HhhhH
Confidence 35688999999999765334667788999998 87764
No 40
>PRK14425 acylphosphatase; Provisional
Probab=32.34 E-value=1.4e+02 Score=20.71 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=30.3
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
-.|||.-..-|+|-+.+.+.. .+.++|..+-.+-|...+|.
T Consensus 34 l~G~V~N~~dGsVei~~qG~~----~~le~f~~~l~~gp~~a~V~ 74 (94)
T PRK14425 34 LTGWVRNESDGSVTALIAGPD----SAISAMIERFRRGPPGASVS 74 (94)
T ss_pred CEEEEEECCCCeEEEEEEeCH----HHHHHHHHHHhhCCCceEEE
Confidence 468999999999999999863 33555555555778777664
No 41
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.94 E-value=81 Score=18.68 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHhhcc
Q psy1816 17 IGQPIMSVRSSDKFKPAVIEALRRAKFK 44 (122)
Q Consensus 17 pGqVIfeVr~~~~~~e~AkEALRRAk~K 44 (122)
.|..++.++.. ..+.++++|+.+.++
T Consensus 38 ~~~~~v~~~ve--~~~~~~~~L~~~G~~ 63 (65)
T cd04882 38 GGKALLIFRTE--DIEKAIEVLQERGVE 63 (65)
T ss_pred CCeEEEEEEeC--CHHHHHHHHHHCCce
Confidence 36777777765 488999999998875
No 42
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=31.34 E-value=15 Score=27.66 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=32.9
Q ss_pred ccCCCceEEEEe-CCCcccccCHH-HHHh----------------hhhc-C-ceeecCCCCceeeeeecCCCCCc
Q psy1816 43 FKFPGRQKIYVS-KKWGFTKYDRE-EYET----------------LRDQ-N-RTSIISTPKSVFFPIFQGSPTLS 97 (122)
Q Consensus 43 ~KLPgr~RIvis-~~~gFT~~~~~-e~~~----------------~~~e-~-~l~~~g~~~~~~~~~~~~~~~~~ 97 (122)
.+||..+-|++| .+.||++|++. +|++ +.++ + -.+..|..|-..+-|..+.|..+
T Consensus 14 ~~l~p~~~ivvRiDG~~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~SDEiSfvf~~~~~~f~ 88 (135)
T PF04446_consen 14 LRLLPNTPIVVRIDGRGFHKFTKRHGFEKPNDERFLKAMNEAAKALMEEFPDIVLAYGQSDEISFVFRKSTPLFN 88 (135)
T ss_dssp ----TTSEEEEEEEETTHHHHHHHTT--SS--HHHHHHHHHHHHHHHHHSSSEEEEEEETTEEEEEE-TT--TTT
T ss_pred cccCCCCeEEEEEeCcchhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEcCCeeEEEECCCChhhc
Confidence 458888888888 78899999887 2222 2222 2 45778888888887777777544
No 43
>PRK14452 acylphosphatase; Provisional
Probab=31.33 E-value=1.7e+02 Score=21.20 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=32.9
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||.-..-|+|-+.+.|. +.+.++|.....+-|...+|.
T Consensus 49 ~G~V~N~~dGsVeI~~qG~----~~~ve~F~~~l~~gP~~A~V~ 88 (107)
T PRK14452 49 SGWVRNLSDGSVEVQAEGP----PLALSELRAWCERGPPGARVK 88 (107)
T ss_pred EEEEEECCCCCEEEEEEcC----HHHHHHHHHHHhcCCCCcEEE
Confidence 5899999999999999875 447888877788888877775
No 44
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=30.87 E-value=1e+02 Score=19.18 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=27.6
Q ss_pred ceeEEEeeCC--CeEEEEEeCCCCHHHHHHHHHHhhccCCC
Q psy1816 9 QGTVARVNIG--QPIMSVRSSDKFKPAVIEALRRAKFKFPG 47 (122)
Q Consensus 9 ~G~vARVkpG--qVIfeVr~~~~~~e~AkEALRRAk~KLPg 47 (122)
..|.|+|... .....+. .-...+.|..|..+|+.++=+
T Consensus 12 gkw~A~I~~~~~gk~~~lG-~f~t~eeAa~Ayd~a~~~~~g 51 (61)
T cd00018 12 GKWVAEIRDPSGGRRIWLG-TFDTAEEAARAYDRAALKLRG 51 (61)
T ss_pred CcEEEEEEeCCCCceEccC-CCCCHHHHHHHHHHHHHHhcC
Confidence 3499999877 4555553 345788999999999888744
No 45
>PRK14433 acylphosphatase; Provisional
Probab=30.47 E-value=1.8e+02 Score=19.94 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=30.2
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||--..-|+|-+.+.+. +.+.++|..+-.+-|...+|.
T Consensus 30 ~G~V~N~~dG~Vei~~~G~----~~~i~~f~~~l~~gP~~a~V~ 69 (87)
T PRK14433 30 SGYAENLSDGRVEVVAEGP----KEALERLLHWLRRGPRHARVE 69 (87)
T ss_pred EEEEEECCCCCEEEEEEEC----HHHHHHHHHHHhhCCCCcEEE
Confidence 5899999999999999886 335666666666778766653
No 46
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=30.07 E-value=61 Score=26.04 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=27.7
Q ss_pred hhhcCceeecCCCCceeeeeecCCCCCchhHHh
Q psy1816 70 LRDQNRTSIISTPKSVFFPIFQGSPTLSEEEII 102 (122)
Q Consensus 70 ~~~e~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 102 (122)
+-.|.+.-.-|.||.-|.=||+-+||+|++.+-
T Consensus 118 ~d~eYs~aiVgsPdr~ylWlLsRtP~~s~~~~~ 150 (174)
T COG3040 118 LDPEYSWAIVGSPDREYLWLLSRTPTLSQETLK 150 (174)
T ss_pred ECCCccEEEEeCCCcceEEEEecCCCCCHHHHH
Confidence 345677888899999999999999999987543
No 47
>PRK14738 gmk guanylate kinase; Provisional
Probab=30.04 E-value=1.4e+02 Score=22.67 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=39.2
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHhhccC--CCceEEEE-----eCCCcccccCHHHHHhhhhcCceeecCC
Q psy1816 17 IGQPIMSVRSSDKFKPAVIEALRRAKFKF--PGRQKIYV-----SKKWGFTKYDREEYETLRDQNRTSIIST 81 (122)
Q Consensus 17 pGqVIfeVr~~~~~~e~AkEALRRAk~KL--Pgr~RIvi-----s~~~gFT~~~~~e~~~~~~e~~l~~~g~ 81 (122)
.+++|.-+.....-.....++|.....++ |.+..-.. ..+..|.-.++++|.++..+|.++..+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~ 83 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAE 83 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEE
Confidence 45666656555556788888886543333 22211111 1233466679999999999999886443
No 48
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.00 E-value=61 Score=23.26 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=20.5
Q ss_pred eeCCCeEEEEEeCCCCHHHHHHHHHHhhcc
Q psy1816 15 VNIGQPIMSVRSSDKFKPAVIEALRRAKFK 44 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~~e~AkEALRRAk~K 44 (122)
++||++|+-+.+.. +-....+|++.|+.+
T Consensus 101 ~~~gDvli~iS~SG-~s~~vi~a~~~Ak~~ 129 (138)
T PF13580_consen 101 IRPGDVLIVISNSG-NSPNVIEAAEEAKER 129 (138)
T ss_dssp --TT-EEEEEESSS--SHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCC-CCHHHHHHHHHHHHC
Confidence 79999999998754 557778899988765
No 49
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=29.90 E-value=1.2e+02 Score=24.44 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhc--cC-CCceEEEEeCCCcccccCHHHHHhhhh
Q psy1816 31 KPAVIEALRRAKF--KF-PGRQKIYVSKKWGFTKYDREEYETLRD 72 (122)
Q Consensus 31 ~e~AkEALRRAk~--KL-Pgr~RIvis~~~gFT~~~~~e~~~~~~ 72 (122)
.+.|++||+-|.. .+ .....|.+-.+.||..++.+|.+++.+
T Consensus 192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~ 236 (247)
T PTZ00488 192 QDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQ 236 (247)
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHH
Confidence 4556666766665 22 344566556688899999998888774
No 50
>PRK14424 acylphosphatase; Provisional
Probab=29.55 E-value=2e+02 Score=20.22 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=28.3
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||.-...|+|-+.+.+.++..+.-+.+|+ .-|...+|.
T Consensus 36 ~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~----~gp~~a~V~ 75 (94)
T PRK14424 36 RGWVANLEDGTVEAMIQGPAAQIDRMLAWLR----HGPPAARVT 75 (94)
T ss_pred eEEEEECCCCCEEEEEEECHHHHHHHHHHHH----hCCCCcEEE
Confidence 5899999999999999987544444444443 456665553
No 51
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=29.54 E-value=44 Score=25.48 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=49.5
Q ss_pred CCCCCCCce---eEEEeeCCCeEEEE-------------EeCCCCHHHHHHHHHH---hhccCCCceEEEEeCCCccccc
Q psy1816 2 RGAYGKPQG---TVARVNIGQPIMSV-------------RSSDKFKPAVIEALRR---AKFKFPGRQKIYVSKKWGFTKY 62 (122)
Q Consensus 2 RgAFGKP~G---~vARVkpGqVIfeV-------------r~~~~~~e~AkEALRR---Ak~KLPgr~RIvis~~~gFT~~ 62 (122)
|+-||-|.+ .|-.|+||..||=- .+.. -....-.|+.- ...++|...||.+ .|-..++
T Consensus 19 ~~lFGLP~~~~~~V~~I~pG~~LFLfn~~~r~L~GifeA~S~G-~~ni~p~Af~~~~~~~~~fPAQVrf~i--~~~C~PL 95 (130)
T PF10539_consen 19 RQLFGLPAGHKDFVKKIKPGMPLFLFNYSDRKLYGIFEATSDG-GMNIEPYAFSGSGSGESPFPAQVRFRI--RWDCPPL 95 (130)
T ss_pred cccccCChhhhhHHheeCCCCEEEEEEcCCCEEEEEEEecCCC-ccCcChhhhCCCCCCCcccceEEEEEE--eeeeecC
Confidence 567888875 57788999998733 2221 12223344444 3378888888876 6778899
Q ss_pred CHHHHHhhhhcCce
Q psy1816 63 DREEYETLRDQNRT 76 (122)
Q Consensus 63 ~~~e~~~~~~e~~l 76 (122)
..++|...++++.-
T Consensus 96 ~E~~fk~aI~~Ny~ 109 (130)
T PF10539_consen 96 PESQFKPAIKDNYY 109 (130)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999887653
No 52
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.17 E-value=70 Score=29.69 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecCCC
Q psy1816 32 PAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIISTP 82 (122)
Q Consensus 32 e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g~~ 82 (122)
.-+.|||+.|+.++..+..|.--....++.-+.+++.++ .+|-|+|-|-.
T Consensus 305 ~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG 354 (533)
T COG0504 305 KSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKL-VDGILVPGGFG 354 (533)
T ss_pred HHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhc-CCEEEeCCCCC
Confidence 357899999999999999998888888888777777776 78888866643
No 53
>PRK14444 acylphosphatase; Provisional
Probab=28.98 E-value=1.7e+02 Score=20.21 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=29.5
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||--..-|+|-+.+.+. +...+.|..+-.+.|...+|.
T Consensus 33 ~G~V~N~~dG~Vei~~qG~----~~~i~~f~~~l~~gp~~a~V~ 72 (92)
T PRK14444 33 KGWVRNLSDGRVEAVFEGS----RPAVQKMISWCYSGPSHARVE 72 (92)
T ss_pred EEEEEECCCCcEEEEEEcC----HHHHHHHHHHHHhCCCCcEEE
Confidence 5899999999999999986 334555555555678777663
No 54
>PRK14421 acylphosphatase; Provisional
Probab=28.95 E-value=1.5e+02 Score=21.14 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=30.1
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||.-..-|+|-+.+.+. +.+.++|..+-.+-|...+|.
T Consensus 33 ~G~V~N~~dG~Vei~~~G~----~~~i~~f~~~l~~gP~~a~V~ 72 (99)
T PRK14421 33 EGWVRNRRDGSVEALFAGP----ADAVAEMIARCRRGPSAARVD 72 (99)
T ss_pred EEEEEECCCCEEEEEEeCC----HHHHHHHHHHHHhCCCCcEEE
Confidence 5899999999999999876 344555665555778877774
No 55
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=28.05 E-value=87 Score=23.11 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=43.0
Q ss_pred EEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeec--CCCCceeeeee
Q psy1816 13 ARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSII--STPKSVFFPIF 90 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~--g~~~~~~~~~~ 90 (122)
.-+.-|.+||+-.......+...|..-...+-++.+.-+ .+.+|+..+.+..-.-.. ..+.-.|+-|+
T Consensus 38 Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~v----------rs~~el~~i~~~nPf~~~~~~~~~~~~v~fl 107 (137)
T PF08002_consen 38 TYIQSGNVVFESDRDPAELAAKIEKALEERFGFDVPVIV----------RSAEELRAIIAANPFPWEAEADPKRLYVTFL 107 (137)
T ss_dssp EETTTTEEEEEESS-HHHHHHHHHHHHHHH-TT---EEE----------EEHHHHHHHHTT--GGGGS----SEEEEEEE
T ss_pred EEEeeCCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEE----------eeHHHHHHHHHHCCCcccccCCcceEEEEEe
Confidence 345779999993222223333445555556666655443 467899999987755443 35777888899
Q ss_pred cCCCCCchhHHhhc
Q psy1816 91 QGSPTLSEEEIIES 104 (122)
Q Consensus 91 ~~~~~~~~~~~~~~ 104 (122)
.+.|....-+-+..
T Consensus 108 ~~~~~~~~~~~l~~ 121 (137)
T PF08002_consen 108 SGPPDAEALEELAA 121 (137)
T ss_dssp -TT--HHHHHHHHT
T ss_pred CCCCCHHHHHHHhc
Confidence 88877654444443
No 56
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=28.01 E-value=1.8e+02 Score=26.29 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=31.7
Q ss_pred EEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe-----CCCcccccCHHHHHhhhhc
Q psy1816 21 IMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS-----KKWGFTKYDREEYETLRDQ 73 (122)
Q Consensus 21 IfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis-----~~~gFT~~~~~e~~~~~~e 73 (122)
|+||+ +.|.-+.+-||++|+.+= .+.-|.-+ ...|||.++..+|..++.+
T Consensus 19 I~SVC--sahp~VieAAl~~a~~~~-~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~ 73 (424)
T PF08013_consen 19 IYSVC--SAHPLVIEAALERAKEDD-SPVLIEATSNQVNQFGGYTGMTPADFRDFVRE 73 (424)
T ss_dssp EEEE------HHHHHHHHHHCCCS--S-EEEEEETTTCSTT-TTTTB-HHHHHHHHHH
T ss_pred eEEec--CCCHHHHHHHHHHHHhcC-CeEEEEeccccccccCCcCCCCHHHHHHHHHH
Confidence 78887 458888888999998764 22333333 3459999999999888753
No 57
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=27.71 E-value=40 Score=25.79 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.4
Q ss_pred EeeCCCeEEEEEeC
Q psy1816 14 RVNIGQPIMSVRSS 27 (122)
Q Consensus 14 RVkpGqVIfeVr~~ 27 (122)
+|+.||+|+++...
T Consensus 3 ~VkkG~~L~~ld~~ 16 (265)
T TIGR00999 3 PVKKGQVLAVVDSP 16 (265)
T ss_pred cccCCCEEEEEccH
Confidence 79999999999864
No 58
>PRK14423 acylphosphatase; Provisional
Probab=27.24 E-value=2e+02 Score=19.78 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=29.4
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
-.|||.-..-|+|-+.+.+.+ .+.+.|...-.+-|...+|.
T Consensus 33 l~G~V~N~~dG~Vei~~~G~~----~~i~~f~~~l~~gp~~a~V~ 73 (92)
T PRK14423 33 VDGWVRNLDDGRVEAVFEGPR----DAVEAMVEWCHEGSPAAVVE 73 (92)
T ss_pred CEEEEEECCCCeEEEEEEECH----HHHHHHHHHHHhCCCceEEE
Confidence 368999999999999998863 34555555555667766653
No 59
>PRK14440 acylphosphatase; Provisional
Probab=27.18 E-value=2.1e+02 Score=19.74 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=27.9
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
-.|||.-..-|+|-+.+.+.++ +.++|..+-.+-|...+|.
T Consensus 31 l~G~V~N~~dG~Vei~~~G~~~----~v~~f~~~l~~gp~~a~V~ 71 (90)
T PRK14440 31 IKGYAKNLPDGSVEVVAEGYEE----ALSKLLERIKQGPPAAEVE 71 (90)
T ss_pred CEEEEEECCCCCEEEEEEcCHH----HHHHHHHHHhhCCCCcEEE
Confidence 4689999999999999988633 3444444444667666553
No 60
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=26.13 E-value=1.1e+02 Score=25.24 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=31.1
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHh----hccCC
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRA----KFKFP 46 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRA----k~KLP 46 (122)
.+..-++++|+.++-|.+-..|...|-+|++-+ |...|
T Consensus 215 ~Hr~G~l~vge~~v~v~v~a~hR~~af~a~~~~id~lK~~~p 256 (274)
T PRK14493 215 HHRTGVIEAGEDIVFVVVLAGHRQEAFRAVSDGIDRLKDEVP 256 (274)
T ss_pred EEeeccccCCCeEEEEEEecCCHHHHHHHHHHHHHHHhhcCC
Confidence 467778999999999999999999999888755 55555
No 61
>PRK14442 acylphosphatase; Provisional
Probab=26.12 E-value=2.2e+02 Score=19.56 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=30.2
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||--..-|+|-+.+.+. +.+.++|..+-.+-|...+|.
T Consensus 33 ~G~V~N~~dG~Vei~~qG~----~~~i~~f~~~l~~gp~~a~V~ 72 (91)
T PRK14442 33 DGWVRNLDDGRVEVVWEGE----EDRAKALERWLGRGPRHAEVS 72 (91)
T ss_pred EEEEEECCCCCEEEEEEcC----HHHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999999886 334566666666778877664
No 62
>PRK14441 acylphosphatase; Provisional
Probab=24.93 E-value=2.3e+02 Score=19.63 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=27.9
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||--..-|+|-+.+.|.+. ..+.|...-.+-|...+|.
T Consensus 34 ~G~V~N~~dG~Vei~~qG~~~----~i~~f~~~l~~gp~~a~V~ 73 (93)
T PRK14441 34 EGWVRNLPDGRVEAEAEGERA----AVGALVRWCHAGPPAARVD 73 (93)
T ss_pred EEEEEECCCCEEEEEEEECHH----HHHHHHHHHhhCCCCcEEE
Confidence 589999999999999998633 3344444444677666553
No 63
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=24.85 E-value=1.6e+02 Score=20.48 Aligned_cols=51 Identities=25% Similarity=0.157 Sum_probs=32.9
Q ss_pred CeEEEEEeCCCC--------HHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHh
Q psy1816 19 QPIMSVRSSDKF--------KPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYET 69 (122)
Q Consensus 19 qVIfeVr~~~~~--------~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~ 69 (122)
++-|+|.-+-.+ .-..+||+|.....||..+-+++.-+-|+...+-++..+
T Consensus 43 r~g~~vsKK~gk~AV~RNriKR~lRe~~R~~~~~l~~~~d~v~~~r~~~~~~~~~~l~~ 101 (111)
T PF00825_consen 43 RVGFSVSKKVGKRAVKRNRIKRRLREAFRLNKPELPPGYDIVFIARPGALELSFEELEK 101 (111)
T ss_dssp EEEEEE-STTSS-HHHHHHHHHHHHHHHHHCTTTS-SSSEEEEEE-CGGGGS-HHHHHH
T ss_pred EEEEEecCccccchhHHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcCcCCHHHHHH
Confidence 566666544333 234689999999999977777777777777666665544
No 64
>PRK14451 acylphosphatase; Provisional
Probab=24.69 E-value=2.4e+02 Score=19.39 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=30.1
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
-.|||.-..-|+|-+.+.+.+ ...++|...-.+-|...+|.
T Consensus 31 l~G~V~N~~dG~Vei~~qG~~----~~i~~f~~~l~~gp~~a~V~ 71 (89)
T PRK14451 31 ISGWARNLADGRVEVFACGKE----DKLEEFYTWLQKGPLNARVD 71 (89)
T ss_pred CEEEEEECCCCCEEEEEEECH----HHHHHHHHHHhhCCCceEEE
Confidence 358999999999999999863 33455555555678777764
No 65
>PRK14436 acylphosphatase; Provisional
Probab=24.64 E-value=2.4e+02 Score=19.45 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.4
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||--...|+|-+.+.+.. .+.+.|...-.+-|...+|.
T Consensus 33 ~G~V~N~~dG~Vei~~qG~~----~~i~~f~~~l~~gp~~a~V~ 72 (91)
T PRK14436 33 NGWVRNLPDGSVEAVLEGDE----ERVEALIGWAHQGPPLARVT 72 (91)
T ss_pred EEEEEECCCCcEEEEEEcCH----HHHHHHHHHHhhCCCceEEE
Confidence 58999999999999998863 33445555544667666654
No 66
>PRK14438 acylphosphatase; Provisional
Probab=24.43 E-value=2.3e+02 Score=19.42 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=28.4
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||.-..-|+|-+.+.+.++. .++|..+-.+-|...+|.
T Consensus 32 ~G~V~N~~dG~Vei~~qG~~~~----i~~f~~~l~~gp~~a~V~ 71 (91)
T PRK14438 32 SGWVKNLPNGSVQGCFEGEETD----VAALIDWCHHGPSRARVS 71 (91)
T ss_pred EEEEEECCCCEEEEEEEECHHH----HHHHHHHHhhCCCCcEEE
Confidence 5899999999999999986433 444555544667766553
No 67
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=24.25 E-value=92 Score=24.87 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=38.9
Q ss_pred HHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecCCCCceeeeeecCCCCCchh
Q psy1816 37 ALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIISTPKSVFFPIFQGSPTLSEE 99 (122)
Q Consensus 37 ALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~~~~~~~~~~~~~~~ 99 (122)
-++.|......+..+.||...|-=-|+.+|+..|+.+-+....=--||+-+=.|.-.-++..+
T Consensus 41 ~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~ 103 (201)
T PF03932_consen 41 LIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEE 103 (201)
T ss_dssp HHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HH
T ss_pred HHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHH
Confidence 344444467777888888777644599999999998877654444489988888888888765
No 68
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=24.09 E-value=1.3e+02 Score=26.47 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=39.9
Q ss_pred eEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhh
Q psy1816 11 TVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRD 72 (122)
Q Consensus 11 ~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~ 72 (122)
.+|..+||.+-- .....+..+++++++..+.| .++|.+|-..|| .+.+-|.-+.+
T Consensus 185 l~a~LRpGn~~s----a~g~~~fL~~~l~~lr~~~~-~~~ILvR~DSgF--~~~el~~~ce~ 239 (448)
T PF13701_consen 185 LAAELRPGNVHS----AKGAAEFLKRVLRRLRQRWP-DTRILVRGDSGF--ASPELMDWCEA 239 (448)
T ss_pred EEEEccCCCCCh----HHHHHHHHHHHHHHHhhhCc-cceEEEEecCcc--CcHHHHHHHHh
Confidence 357788887432 33467888899999999998 689999999998 55555544433
No 69
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=23.62 E-value=1.6e+02 Score=20.55 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHh
Q psy1816 33 AVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYET 69 (122)
Q Consensus 33 ~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~ 69 (122)
..+|++|.....+| .+-|++.-+.++-+.+-++.++
T Consensus 63 ~lRe~~R~~~~~l~-~~d~v~i~r~~~~~~~~~~l~~ 98 (105)
T TIGR00188 63 LIREVFRERQELLK-ALDVVVIVRKGFSELTYEAFLK 98 (105)
T ss_pred HHHHHHHHhhcccC-CccEEEEECCCcCcCCHHHHHH
Confidence 46899999999999 5666666666776666665544
No 70
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=23.27 E-value=2e+02 Score=19.21 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=32.2
Q ss_pred CCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccc
Q psy1816 17 IGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTK 61 (122)
Q Consensus 17 pGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~ 61 (122)
.|+..+++.+. +...|+.-++..+.-+-..+.+.++++..+.+
T Consensus 22 ~~~~~l~~~te--n~~vARri~~llk~~f~i~~ei~v~~~~~l~k 64 (86)
T PF10298_consen 22 NGRISLEISTE--NAAVARRIYSLLKKLFDIDPEISVRRSRNLKK 64 (86)
T ss_dssp TTEEEE--EES---HHHHHHHHHHHHHTT--EEEEEEEE-SSSBE
T ss_pred CCEEEEEEEeC--CHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 67888888875 99999999999999999999999988777655
No 71
>PRK14435 acylphosphatase; Provisional
Probab=23.03 E-value=2.6e+02 Score=19.20 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=29.7
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
-.|||--...|+|-+.+.+.+ .+.++|..+-.+-|...+|.
T Consensus 30 l~G~V~N~~dG~Vei~~~G~~----~~i~~f~~~l~~gp~~a~V~ 70 (90)
T PRK14435 30 VKGYVMNMDDGSVFIHAEGDE----NALRRFLNEVAKGPPAAVVT 70 (90)
T ss_pred CEEEEEECCCCCEEEEEEECH----HHHHHHHHHHhhCCCCcEEE
Confidence 368999999999999999863 34555665555777766653
No 72
>PRK14428 acylphosphatase; Provisional
Probab=22.49 E-value=2.5e+02 Score=19.91 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=29.1
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||--..-|.|-+++.+.+ .+.++|..+-.+-|...+|.
T Consensus 37 ~G~V~N~~dGsVei~~qG~~----~~i~~fi~~l~~gP~~a~V~ 76 (97)
T PRK14428 37 QGWVRNCRDGSVELEAQGSS----DAVQALVEQLAIGPRWSEVS 76 (97)
T ss_pred EEEEEECCCCEEEEEEEcCH----HHHHHHHHHHhhCCCccEEE
Confidence 58999999999999999863 44455555555677777663
No 73
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=22.41 E-value=1.9e+02 Score=21.46 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhh
Q psy1816 32 PAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLR 71 (122)
Q Consensus 32 e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~ 71 (122)
-..+|++|.-...||+ +-||+.-+-+....+-.+..+..
T Consensus 68 R~lRE~fR~~~~~l~g-~DiVviaR~~~~~~~~~~l~~~l 106 (130)
T PRK00396 68 RLIRESFRLNQHSLAG-WDIVVVARKGLGELENPELHQQF 106 (130)
T ss_pred HHHHHHHHHhhccCCC-eeEEEEeCCCcccCCHHHHHHHH
Confidence 3568999999999985 67777766677777766655433
No 74
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=21.84 E-value=1.7e+02 Score=24.38 Aligned_cols=55 Identities=7% Similarity=-0.030 Sum_probs=41.3
Q ss_pred CCceEEEEeCCCcccccCHHHHHhhhhcCceeecCCCCceeeeeecCCCCCchhH
Q psy1816 46 PGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIISTPKSVFFPIFQGSPTLSEEE 100 (122)
Q Consensus 46 Pgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~~~~~~~~~~~~~~~~ 100 (122)
..+..+.||...|==-|+.+|++.|+.+-+....---||+-+=+|.-.-++..+-
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~ 105 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPR 105 (248)
T ss_pred CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHH
Confidence 3455666776555446999999999999887655556899999998888887653
No 75
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=21.82 E-value=1.1e+02 Score=18.54 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=10.3
Q ss_pred EEeeCCCeEEEEEeC
Q psy1816 13 ARVNIGQPIMSVRSS 27 (122)
Q Consensus 13 ARVkpGqVIfeVr~~ 27 (122)
|-+++|++|.+|.+.
T Consensus 29 ~gl~~GD~I~~Ing~ 43 (70)
T cd00136 29 AGLQAGDVILAVNGT 43 (70)
T ss_pred cCCCCCCEEEEECCE
Confidence 457777777777655
No 76
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=21.65 E-value=2.3e+02 Score=22.93 Aligned_cols=49 Identities=22% Similarity=0.122 Sum_probs=37.4
Q ss_pred CeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCC-cccccCHHHHHhhhhcC
Q psy1816 19 QPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKW-GFTKYDREEYETLRDQN 74 (122)
Q Consensus 19 qVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~-gFT~~~~~e~~~~~~e~ 74 (122)
+||+--.+. +.|+.|+..|+..+-+||- |..+ .=|+++-+|..+|+.+-
T Consensus 1 kVIlvTDGD----~~A~ravE~aa~~iGgRCI---S~S~GNPT~lsG~elV~lIk~a 50 (180)
T PF14097_consen 1 KVILVTDGD----EYAKRAVEIAAKNIGGRCI---SQSAGNPTPLSGEELVELIKQA 50 (180)
T ss_pred CEEEEECCh----HHHHHHHHHHHHHhCcEEE---eccCCCCCcCCHHHHHHHHHhC
Confidence 355554443 8999999999999999983 3333 46899999999998653
No 77
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.99 E-value=1.7e+02 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHhhcc-CC-CceEE-EEeCCCcccccCHHHHHhhh
Q psy1816 30 FKPAVIEALRRAKFK-FP-GRQKI-YVSKKWGFTKYDREEYETLR 71 (122)
Q Consensus 30 ~~e~AkEALRRAk~K-LP-gr~RI-vis~~~gFT~~~~~e~~~~~ 71 (122)
-.+.|++||+.+... +- ....+ ++++..||..++.+|..++.
T Consensus 182 ai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 182 AIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 345666677755543 21 11122 33444678888888877764
No 78
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=20.92 E-value=82 Score=27.28 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=10.6
Q ss_pred EeeCCCeEEEEE
Q psy1816 14 RVNIGQPIMSVR 25 (122)
Q Consensus 14 RVkpGqVIfeVr 25 (122)
.|+.|++||++.
T Consensus 74 ~Vk~Gd~L~~iD 85 (352)
T COG1566 74 LVKKGDVLFRID 85 (352)
T ss_pred EecCCCeEEEEC
Confidence 478999999996
No 79
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.84 E-value=2.2e+02 Score=17.52 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=18.7
Q ss_pred CeEEEEEeCCCCHHHHHHHHHHhhccC
Q psy1816 19 QPIMSVRSSDKFKPAVIEALRRAKFKF 45 (122)
Q Consensus 19 qVIfeVr~~~~~~e~AkEALRRAk~KL 45 (122)
+.++-+.+. +.+.|.++|+.+++++
T Consensus 40 ~~~~rl~~~--~~~~~~~~L~~~G~~v 64 (66)
T cd04908 40 FGILRLIVS--DPDKAKEALKEAGFAV 64 (66)
T ss_pred CCEEEEEEC--CHHHHHHHHHHCCCEE
Confidence 567777763 5679999999887764
No 80
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=20.63 E-value=1.1e+02 Score=27.38 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=21.3
Q ss_pred EEeeCCCeEEEEEeCCCCHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDKFKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~~~e~AkEALRRA 41 (122)
.+|+.|++|+.|....+..+.+.+.|+.|
T Consensus 386 ~~V~~g~~l~~i~~~~~~~~~~~~~~~~a 414 (434)
T PRK06078 386 DSVKKGESLATIYANRENVEDVKAKFYKN 414 (434)
T ss_pred CEeCCCCeEEEEeCChHHHHHHHHHHHhh
Confidence 37899999999996555566666666555
No 81
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=20.55 E-value=1e+02 Score=23.58 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=39.2
Q ss_pred CceeEEEeeCCCeEEEEE--eCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCce
Q psy1816 8 PQGTVARVNIGQPIMSVR--SSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRT 76 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr--~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l 76 (122)
...++.+|++|.||..=+ +...+.|+|--||+-+..+ .+|.+..+ +-=|......|-+
T Consensus 36 dp~f~~~v~~gdilVaG~nFG~GSSRE~A~~al~~~Gi~------~VIA~SFa-----~If~rN~iN~Gl~ 95 (129)
T cd01674 36 DSEFSTKTKQGDILVSGFNFGTGSSREQAATALLAKGIP------LVVSGSFG-----NIFSRNSINNALL 95 (129)
T ss_pred CchhhhcCCCCCEEEeCCccCCCCcHHHHHHHHHHcCcc------EEEechHH-----HHHHHhhHhcCCC
Confidence 345788999999987643 3356899999999999876 44444322 3335566656643
No 82
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=58 Score=27.44 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=36.5
Q ss_pred hhccCCCceEEEEe-CCCcccccCH---------HHHHhhh---------hcCc--eeecCCCCceeeeeecCCCCC
Q psy1816 41 AKFKFPGRQKIYVS-KKWGFTKYDR---------EEYETLR---------DQNR--TSIISTPKSVFFPIFQGSPTL 96 (122)
Q Consensus 41 Ak~KLPgr~RIvis-~~~gFT~~~~---------~e~~~~~---------~e~~--l~~~g~~~~~~~~~~~~~~~~ 96 (122)
|...+|..|.||++ .+.||++|++ +-|.+++ +.|- ++..|-.|-.++-+-.|+-..
T Consensus 13 a~~R~~P~t~iVlRiDGr~Fhk~tk~l~FeKPyD~~f~~lM~~tA~~lv~~~~~~i~LaYtfSDE~sfl~~~st~pF 89 (249)
T COG4021 13 AHDRILPQTYIVLRIDGRGFHKFTKFLDFEKPYDERFLKLMNATAKNLVLKYGLDIILAYTFSDEISFLLKSSTVPF 89 (249)
T ss_pred hhhcCCCCceEEEEecChhhhHHHhhcCcCCcchHHHHHHHHHHHHHHHHHhCCCeEEEEecccceEEEeecCCccc
Confidence 45668899999999 6778988875 2333332 3333 677777777777665554433
No 83
>PRK14450 acylphosphatase; Provisional
Probab=20.11 E-value=3e+02 Score=18.79 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=27.0
Q ss_pred ceeEEEeeCCC-eEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQ-PIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGq-VIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||.-..-|+ |-+.+.+.++..+.-+++| .+-|...+|.
T Consensus 31 ~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l----~~gp~~a~V~ 71 (91)
T PRK14450 31 CGYAKNLANGNEVEVVAEGDKDSLLEFLDLL----RSGPPRAEVK 71 (91)
T ss_pred EEEEEECCCCCEEEEEEEeCHHHHHHHHHHH----hhCCCCcEEE
Confidence 58999999996 8888888644444444444 4567766663
Done!