Query psy1816
Match_columns 122
No_of_seqs 149 out of 654
Neff 3.6
Searched_HMMs 29240
Date Sat Aug 17 00:06:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_H RPL10, 60S ribosomal pr 100.0 7.3E-36 2.5E-40 237.8 9.8 96 1-100 115-210 (215)
2 3j0l_J Ribosomal protein L10; 100.0 7.7E-36 2.6E-40 238.1 3.7 94 1-98 113-206 (219)
3 2zkr_h 60S ribosomal protein L 100.0 3E-33 1E-37 222.6 7.2 94 1-98 115-208 (214)
4 3iz5_I 60S ribosomal protein L 100.0 9.4E-36 3.2E-40 238.3 -10.3 94 1-98 115-208 (224)
5 2pa2_A 60S ribosomal protein L 100.0 3.3E-29 1.1E-33 190.6 6.6 68 1-68 84-151 (151)
6 3j21_N 50S ribosomal protein L 99.9 3.7E-22 1.3E-26 155.7 6.8 58 1-58 112-171 (181)
7 1vq8_H 50S ribosomal protein L 99.8 2.4E-21 8.2E-26 149.8 7.8 57 1-57 113-169 (171)
8 1ffk_F Ribosomal protein L10E; 99.8 1E-20 3.5E-25 144.6 7.4 55 1-57 101-155 (157)
9 3r8s_M 50S ribosomal protein L 99.8 3.6E-19 1.2E-23 132.7 7.1 53 1-55 82-134 (136)
10 2ftc_I Mitochondrial ribosomal 99.7 1.9E-17 6.3E-22 120.6 5.7 49 1-50 70-118 (118)
11 3bbo_O Ribosomal protein L16; 99.7 9.5E-18 3.2E-22 124.8 3.3 52 1-54 83-134 (135)
12 2zjr_J 50S ribosomal protein L 99.6 4.1E-17 1.4E-21 122.3 0.9 52 2-55 83-136 (142)
13 3cbz_A Dishevelled-2; PDZ doma 54.6 6.4 0.00022 25.9 2.0 42 14-56 51-95 (108)
14 1wi4_A Synip, syntaxin binding 52.5 11 0.00038 24.9 2.9 29 14-42 59-90 (109)
15 2q5w_E Molybdopterin-convertin 51.0 18 0.00062 26.5 4.1 39 9-47 80-122 (149)
16 2wp4_A Molybdopterin-convertin 51.0 18 0.00063 26.4 4.1 39 9-47 88-130 (147)
17 1fm0_E Molybdopterin convertin 50.4 19 0.00064 26.4 4.1 39 9-47 82-124 (150)
18 3rpf_A Molybdopterin synthase 50.3 24 0.00081 26.0 4.6 39 9-47 79-121 (148)
19 4ap8_A Molybdopterin synthase 50.2 20 0.0007 26.0 4.2 33 9-41 85-117 (135)
20 2omd_A Molybdopterin-convertin 47.0 17 0.00059 26.7 3.5 43 9-51 86-133 (154)
21 2hiy_A Hypothetical protein; C 45.0 38 0.0013 25.1 5.1 74 14-97 42-115 (183)
22 4e34_A Golgi-associated PDZ an 44.6 2.8 9.6E-05 26.1 -1.0 29 13-41 45-76 (87)
23 2cs5_A Tyrosine-protein phosph 44.4 21 0.00073 23.4 3.3 43 14-56 60-105 (119)
24 2dsj_A Pyrimidine-nucleoside ( 43.6 26 0.00089 29.7 4.5 29 13-41 378-406 (423)
25 3ueb_A Putative uncharacterize 42.7 9.3 0.00032 27.4 1.3 16 89-104 11-26 (110)
26 2yt7_A Amyloid beta A4 precurs 41.6 16 0.00055 23.5 2.3 29 12-40 53-84 (101)
27 2iwq_A Multiple PDZ domain pro 41.6 11 0.00039 25.5 1.6 27 15-41 78-107 (123)
28 2ejy_A 55 kDa erythrocyte memb 41.5 12 0.00041 24.7 1.7 26 15-40 55-83 (97)
29 1w2i_A Acylphosphatase; hydrol 41.1 62 0.0021 21.2 5.2 40 8-51 32-71 (91)
30 3e17_A Tight junction protein 40.7 6 0.00021 25.1 0.1 40 13-56 38-80 (88)
31 2fcf_A Multiple PDZ domain pro 39.8 14 0.00048 23.5 1.8 37 15-55 58-97 (103)
32 2gzv_A PRKCA-binding protein; 39.7 17 0.00057 24.2 2.2 41 14-58 68-111 (114)
33 1brw_A PYNP, protein (pyrimidi 39.4 26 0.00088 29.7 3.8 29 13-41 386-414 (433)
34 2db5_A INAD-like protein; PDZ 39.2 19 0.00065 24.0 2.4 27 14-40 72-102 (128)
35 1kjw_A Postsynaptic density pr 39.0 71 0.0024 24.9 6.1 72 8-85 93-178 (295)
36 2dlu_A INAD-like protein; PDZ 39.0 25 0.00086 22.7 3.0 27 15-41 57-86 (111)
37 3lnn_A Membrane fusion protein 39.0 22 0.00075 27.3 3.1 27 13-41 77-103 (359)
38 2vsp_A PDZ domain-containing p 38.8 32 0.0011 21.3 3.4 38 15-56 45-85 (91)
39 2qg1_A Multiple PDZ domain pro 38.1 15 0.0005 22.9 1.6 39 14-56 47-88 (92)
40 1ulr_A Putative acylphosphatas 36.0 64 0.0022 21.0 4.6 40 8-51 30-69 (88)
41 2o2t_A Multiple PDZ domain pro 35.7 21 0.0007 23.3 2.1 39 14-56 67-109 (117)
42 3h5q_A PYNP, pyrimidine-nucleo 35.7 35 0.0012 29.1 4.0 29 13-41 389-417 (436)
43 2pa1_A PDZ and LIM domain prot 35.6 33 0.0011 21.0 3.0 27 15-41 44-73 (87)
44 2ego_A General receptor for ph 35.4 45 0.0015 20.9 3.7 13 15-27 55-67 (96)
45 3nfk_A Tyrosine-protein phosph 35.4 47 0.0016 21.1 3.8 28 15-42 63-93 (107)
46 2fne_A Multiple PDZ domain pro 35.4 19 0.00066 24.0 2.0 28 14-41 71-101 (117)
47 1um1_A KIAA1849 protein, RSGI 34.9 25 0.00087 22.6 2.5 39 14-56 54-95 (110)
48 2byg_A Channel associated prot 34.7 13 0.00046 24.8 1.1 27 14-40 72-101 (117)
49 2e7k_A Maguk P55 subfamily mem 34.6 17 0.00057 23.1 1.5 27 14-40 47-75 (91)
50 1kwa_A Hcask/LIN-2 protein; PD 34.2 8.6 0.00029 24.3 0.0 29 13-41 42-73 (88)
51 2w36_A Endonuclease V; hypoxan 33.9 29 0.00099 27.2 3.0 46 6-51 163-212 (225)
52 1urr_A CG18505 protein; acylph 33.8 91 0.0031 20.8 5.2 41 8-52 39-80 (102)
53 2d90_A PDZ domain containing p 33.7 89 0.003 19.6 5.0 40 15-58 48-90 (102)
54 3trg_A Acylphosphatase; fatty 33.1 96 0.0033 20.7 5.2 40 9-52 41-80 (98)
55 2lob_A Golgi-associated PDZ an 38.2 9.7 0.00033 25.5 0.0 29 13-41 70-101 (112)
56 2ld4_A Anamorsin; methyltransf 31.8 81 0.0028 21.1 4.7 37 15-51 10-46 (176)
57 1wg6_A Hypothetical protein (r 31.6 16 0.00054 24.7 1.1 28 14-41 73-103 (127)
58 1wha_A KIAA0147 protein, scrib 31.4 19 0.00064 23.1 1.3 37 15-55 57-96 (105)
59 2d92_A INAD-like protein; PDZ 31.3 27 0.00093 22.6 2.1 28 14-41 62-92 (108)
60 3axa_A Afadin, nectin-3, prote 31.2 22 0.00077 22.7 1.7 27 14-40 56-85 (106)
61 1vb7_A PDZ and LIM domain 2; P 31.1 62 0.0021 20.1 3.8 39 14-56 47-88 (94)
62 2iwo_A Multiple PDZ domain pro 31.1 19 0.00064 24.2 1.3 28 14-41 71-101 (120)
63 1q7x_A PDZ2B domain of PTP-BAS 30.7 19 0.00065 23.2 1.3 28 14-41 60-90 (108)
64 2fe5_A Presynaptic protein SAP 29.2 26 0.0009 21.7 1.7 13 15-27 52-64 (94)
65 1uew_A Membrane associated gua 29.1 50 0.0017 21.4 3.2 28 13-40 60-90 (114)
66 1uou_A Thymidine phosphorylase 29.0 51 0.0017 28.3 4.0 29 13-41 421-450 (474)
67 2v90_A PDZ domain-containing p 29.0 69 0.0024 19.9 3.7 13 15-27 48-60 (96)
68 2awx_A Synapse associated prot 28.6 15 0.0005 23.7 0.4 14 14-27 51-64 (105)
69 3o46_A Maguk P55 subfamily mem 28.3 11 0.00039 23.6 -0.1 12 15-26 47-58 (93)
70 2vh7_A Acylphosphatase-1; hydr 28.2 1.1E+02 0.0039 20.2 4.9 40 8-51 36-76 (99)
71 3cyy_A Tight junction protein 28.1 30 0.001 21.2 1.8 37 15-55 42-81 (92)
72 2f06_A Conserved hypothetical 28.0 46 0.0016 22.5 2.9 30 16-47 108-137 (144)
73 3pkz_A Recombinase SIN; small 27.6 1.3E+02 0.0046 19.9 5.2 43 26-73 10-52 (124)
74 2q9v_A Membrane-associated gua 27.4 16 0.00054 22.6 0.4 29 14-42 45-76 (90)
75 1j2q_H Proteasome beta subunit 27.4 1E+02 0.0035 22.0 4.9 42 32-73 155-199 (202)
76 1wif_A RSGI RUH-020, riken cDN 27.4 34 0.0011 23.8 2.2 46 8-56 61-110 (126)
77 1wf8_A Neurabin-I; PDZ domain, 27.2 18 0.00063 23.3 0.7 26 15-40 59-87 (107)
78 3hpk_A Protein interacting wit 26.6 12 0.0004 25.0 -0.4 38 14-55 63-103 (125)
79 2la8_A Inactivation-NO-after-p 26.6 16 0.00055 24.1 0.3 28 14-41 43-73 (106)
80 2rcz_A Tight junction protein 26.3 70 0.0024 18.8 3.3 13 15-27 40-52 (81)
81 1whd_A RGS3, regulator of G-pr 26.2 81 0.0028 19.9 3.8 13 15-27 54-66 (100)
82 3h4p_a Proteasome subunit beta 25.9 79 0.0027 23.2 4.1 42 32-73 157-201 (219)
83 2jil_A GRIP1 protein, glutamat 25.8 25 0.00086 22.0 1.2 26 15-40 51-79 (97)
84 2g5m_B Neurabin-2; spinophilin 25.7 13 0.00045 24.1 -0.2 13 15-27 54-66 (113)
85 1i16_A Interleukin 16, LCF; cy 25.6 37 0.0013 22.9 2.1 40 14-56 75-117 (130)
86 3ne5_B Cation efflux system pr 25.6 60 0.0021 26.1 3.6 26 14-41 143-168 (413)
87 2tpt_A Thymidine phosphorylase 25.3 33 0.0011 29.1 2.1 29 13-41 391-420 (440)
88 4amh_A Disks large homolog 1; 25.2 18 0.00063 23.5 0.4 40 14-57 50-92 (106)
89 2m0n_A Putative uncharacterize 25.1 33 0.0011 24.6 1.8 27 78-104 22-49 (112)
90 3soe_A Membrane-associated gua 25.0 85 0.0029 21.6 3.9 53 10-64 45-100 (113)
91 2fhm_A Probable acylphosphatas 24.5 1.5E+02 0.0051 19.2 5.2 40 8-51 30-69 (91)
92 2kv8_A RGS12, regulator of G-p 24.2 29 0.00099 21.1 1.2 14 15-28 41-54 (83)
93 4e4t_A Phosphoribosylaminoimid 24.1 57 0.0019 26.3 3.2 36 5-45 379-414 (419)
94 2dkr_A LIN-7 homolog B; LIN-7B 24.1 1.1E+02 0.0038 18.6 4.0 14 14-27 48-61 (93)
95 1uep_A Membrane associated gua 24.0 27 0.00093 22.3 1.1 28 14-41 52-82 (103)
96 2csj_A TJP2 protein; PDZ domai 23.6 25 0.00086 23.0 0.9 29 13-41 61-92 (117)
97 2r4h_A Membrane-associated gua 23.2 16 0.00054 24.0 -0.2 13 15-27 68-80 (112)
98 3eth_A Phosphoribosylaminoimid 23.2 1.1E+02 0.0037 24.4 4.7 33 15-47 309-341 (355)
99 2djt_A Unnamed protein product 23.2 16 0.00055 23.3 -0.2 13 15-27 57-69 (104)
100 1ihj_A INAD; intermolecular di 23.0 12 0.00041 23.6 -0.8 26 15-40 56-84 (98)
101 2edz_A PDZ domain-containing p 22.9 1.3E+02 0.0044 19.4 4.3 37 15-55 56-95 (114)
102 2eg2_A Nitrogen regulatory pro 22.8 1.5E+02 0.0051 19.6 4.7 43 19-61 58-101 (112)
103 3egg_C Spinophilin; PP1, serin 22.8 17 0.00057 26.4 -0.2 28 14-41 129-159 (170)
104 3b76_A E3 ubiquitin-protein li 22.6 30 0.001 23.3 1.1 28 14-41 71-101 (118)
105 1d5g_A Human phosphatase HPTP1 22.5 11 0.00038 23.6 -1.0 13 15-27 52-64 (96)
106 2he4_A Na(+)/H(+) exchange reg 22.5 88 0.003 19.1 3.3 22 51-72 52-73 (90)
107 2yuy_A RHO GTPase activating p 22.4 42 0.0015 22.3 1.9 26 15-40 79-107 (126)
108 2xkx_A Disks large homolog 4; 22.3 1.8E+02 0.0063 25.3 6.3 71 9-85 520-604 (721)
109 1n7e_A AMPA receptor interacti 22.2 57 0.0019 20.4 2.4 13 15-27 49-61 (97)
110 1wfv_A Membrane associated gua 22.2 11 0.00037 23.9 -1.2 25 15-39 55-82 (103)
111 1v6b_A Harmonin isoform A1; st 22.2 53 0.0018 21.7 2.3 14 14-27 61-74 (118)
112 1yar_H Proteasome beta subunit 22.0 95 0.0033 22.6 3.9 46 32-77 161-210 (217)
113 2dm8_A INAD-like protein; PDZ 22.0 72 0.0024 20.5 2.9 14 14-27 61-74 (116)
114 2ehr_A INAD-like protein; PDZ 21.7 50 0.0017 21.4 2.1 27 14-40 68-97 (117)
115 2gpr_A Glucose-permease IIA co 21.6 1.5E+02 0.0051 21.6 4.8 36 14-61 100-135 (154)
116 1jdq_A TM006 protein, hypothet 21.6 1.6E+02 0.0055 19.6 4.7 13 22-34 29-41 (98)
117 2eei_A PDZ domain-containing p 21.3 1.2E+02 0.0043 19.0 3.9 39 15-57 50-91 (106)
118 1ex7_A Guanylate kinase; subst 21.2 68 0.0023 23.4 2.9 30 56-85 47-76 (186)
119 2bjd_A Acylphosphatase; hypert 21.2 1.9E+02 0.0065 19.3 5.2 40 8-51 42-81 (101)
120 1y7n_A Amyloid beta A4 precurs 21.0 40 0.0014 21.5 1.4 25 15-39 49-76 (90)
121 2gv1_A Probable acylphosphatas 21.0 1.6E+02 0.0054 19.2 4.5 40 8-51 32-72 (92)
122 2iwn_A Multiple PDZ domain pro 20.8 19 0.00065 22.3 -0.2 13 15-27 52-64 (97)
123 1iru_L 20S proteasome; cell cy 20.8 54 0.0018 23.5 2.2 40 33-72 155-197 (204)
124 1v62_A KIAA1719 protein; struc 20.7 18 0.00061 24.0 -0.3 13 15-27 61-73 (117)
125 2h2b_A Tight junction protein 20.4 35 0.0012 21.7 1.0 15 13-27 54-68 (107)
126 1qs0_A 2-oxoisovalerate dehydr 20.2 83 0.0029 26.0 3.5 45 17-62 202-248 (407)
No 1
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=100.00 E-value=7.3e-36 Score=237.76 Aligned_cols=96 Identities=45% Similarity=0.703 Sum_probs=92.0
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIIS 80 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g 80 (122)
||+|||+|+||||||+||||||||+++++++++|+||||+|++|||++|||+++++||||+|+++||++|+++|+|+
T Consensus 115 M~~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~--- 191 (215)
T 4a17_H 115 MRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQYSRLRNQKKLV--- 191 (215)
T ss_dssp TSCCCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESBCTTSSSBHHHHHHHHHTTCEE---
T ss_pred ccCCCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEccccCCCccCHHHHHHHHHCCeEe---
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCCCchhH
Q psy1816 81 TPKSVFFPIFQGSPTLSEEE 100 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (122)
+||+++|++.....|+.-+
T Consensus 192 -~dg~~~k~~~~~gpl~~~~ 210 (215)
T 4a17_H 192 -TDGSNVKVIGERGPLSRLE 210 (215)
T ss_dssp -EETTEEEECCTTSCTTTSG
T ss_pred -cCCccEEEccCCCCHHHHh
Confidence 7889999999888887644
No 2
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=100.00 E-value=7.7e-36 Score=238.14 Aligned_cols=94 Identities=50% Similarity=0.850 Sum_probs=91.2
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIIS 80 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g 80 (122)
||++||+|+||||||+||||||||+++++++++|+||||+|++|||++|||+++++||||+|+++||++|+++|+|+
T Consensus 113 Mr~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~--- 189 (219)
T 3j0l_J 113 MRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVK--- 189 (219)
T ss_dssp SSCCCCEEEEECEEECTTCEESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECCCSSSSSCSCHHHHTTTTSCCSC---
T ss_pred ccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEecccCccccCHHHHHHHHHCCeEe---
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCCCch
Q psy1816 81 TPKSVFFPIFQGSPTLSE 98 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (122)
+||+++|++.....|+.
T Consensus 190 -~dg~~~k~~~~~gpl~~ 206 (219)
T 3j0l_J 190 -DDGAFVKFLSKKGSLEN 206 (219)
T ss_dssp -CCSSSCCCSCCSSSCHH
T ss_pred -cCCccEEEccCCCCHHH
Confidence 88999999998888865
No 3
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.98 E-value=3e-33 Score=222.59 Aligned_cols=94 Identities=55% Similarity=0.881 Sum_probs=54.3
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIIS 80 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g 80 (122)
||++||+|++|||||+||||||||++++.++++|+||||+|++|||++|+|+++++||||+|+++||++|+++|+|+
T Consensus 115 Mg~gkGkp~~wvArVkpGqilfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~~~gft~~~~~~~~~~~~~~~~~--- 191 (214)
T 2zkr_h 115 MRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLI--- 191 (214)
T ss_dssp STTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC-------------------------
T ss_pred ccCCCCCCcEEEEEECCCCEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCccccCHHHHHHHHHCCeEe---
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCCCch
Q psy1816 81 TPKSVFFPIFQGSPTLSE 98 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (122)
+||+++|++.....|+.
T Consensus 192 -~dg~~~~~~~~~g~l~~ 208 (214)
T 2zkr_h 192 -PDGCGVKYIPNRGPLDK 208 (214)
T ss_dssp ------------------
T ss_pred -cCCceEEEECCCCChHH
Confidence 89999999988777753
No 4
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=99.97 E-value=9.4e-36 Score=238.29 Aligned_cols=94 Identities=53% Similarity=0.849 Sum_probs=89.8
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIIS 80 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g 80 (122)
||++||+|+||||||++|||||||+++++++++|+||||+|++|||++|||+++++||||+|+++||++|+++|+|+
T Consensus 115 Mr~~kGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALrrA~~KLP~ktkiv~~~kwgft~~~~~~~~~~~~~~~l~--- 191 (224)
T 3iz5_I 115 MRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIM--- 191 (224)
T ss_dssp HHHCSSSCSCEEEECCCCCSEECCCCCCCCSSCSSSSSSCCCSCCCCCEEEEECCTTTEEEEEEECCSSSCSHHHHH---
T ss_pred ccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCceEEEEecccCccccCHHHHHHHHHcCcEe---
Confidence 89999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCCCch
Q psy1816 81 TPKSVFFPIFQGSPTLSE 98 (122)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (122)
+||+++|++.....|+.
T Consensus 192 -~dg~~vk~~~~~gpl~~ 208 (224)
T 3iz5_I 192 -SDGVNAQLLGSHGRLAK 208 (224)
T ss_dssp -HHHHHHTSSSCEECCCC
T ss_pred -cCCcceEEcCCCCChHH
Confidence 88999999887766654
No 5
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=99.95 E-value=3.3e-29 Score=190.60 Aligned_cols=68 Identities=74% Similarity=1.166 Sum_probs=52.3
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHH
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYE 68 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~ 68 (122)
||++||+|++|||||+||||||||++++.++++|+||||+|++|||++|+|+++++||||+|+++||+
T Consensus 84 Mg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~~~gft~~~~~~~~ 151 (151)
T 2pa2_A 84 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFE 151 (151)
T ss_dssp ---------CCEEEECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC------
T ss_pred cccCCCCccEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCCCCCChhhCC
Confidence 99999999999999999999999999878999999999999999999999999999999999999994
No 6
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.86 E-value=3.7e-22 Score=155.65 Aligned_cols=58 Identities=38% Similarity=0.583 Sum_probs=55.5
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCce--EEEEeCCCc
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQ--KIYVSKKWG 58 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~--RIvis~~~g 58 (122)
||++||+|+||||||++||+||||+++++++++|+||||+|++|||++| ||++++...
T Consensus 112 M~~~kGkp~gwvArVk~Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~t~~kiv~~~~~~ 171 (181)
T 3j21_N 112 MRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEGND 171 (181)
T ss_dssp SSSCSCCCCCCEEEECSSEEEEEEEECSTTHHHHHHHHHHHHHSSSSCCSSCEEECCCC-
T ss_pred cccccCCcceEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhccCCCCeeeEEEEeccHH
Confidence 9999999999999999999999999998899999999999999999999 999998754
No 7
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=99.84 E-value=2.4e-21 Score=149.84 Aligned_cols=57 Identities=35% Similarity=0.374 Sum_probs=54.8
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKW 57 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~ 57 (122)
||++||+|++|||||+||||||||++++.++++|+|||++|++|||++|+|+++++.
T Consensus 113 Mg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KLP~ktkiv~~~~~ 169 (171)
T 1vq8_H 113 MRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPAG 169 (171)
T ss_dssp STTCCCEEEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSCC
T ss_pred ccccCCCCcEEEEEECCCCEEEEEECcCCCHHHHHHHHHHHHhhCCCcEEEEEecCC
Confidence 999999999999999999999999998889999999999999999999999998764
No 8
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=99.82 E-value=1e-20 Score=144.59 Aligned_cols=55 Identities=33% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKW 57 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~ 57 (122)
||++||+|++|||||+||||||||+++ ..++|+|||++|++|||++|+|+++++.
T Consensus 101 Mg~gkG~p~~wvArVk~G~ilfei~gv--~~~~A~eAlr~A~~KlP~ktkiv~~~~~ 155 (157)
T 1ffk_F 101 MRAPFGKSVGTAARSHGANHDFIAWVN--PDPAVEFAWRRAYMKVTPTVNIDSSPAG 155 (157)
T ss_pred ccCCCCCccEEEEEEcCCCEEEEEecc--CHHHHHHHHHHHHhhCCCcEEEEEecCC
Confidence 999999999999999999999999998 4579999999999999999999998764
No 9
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=99.77 E-value=3.6e-19 Score=132.71 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=51.1
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeC
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 55 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~ 55 (122)
|+++||+|++|||||++|||||||.+. +++.|+|||++|++|||++|+|++++
T Consensus 82 MGkGKG~~~~wva~Vk~G~ilfEi~g~--~~~~A~eAlr~a~~KLP~~~kiv~~~ 134 (136)
T 3r8s_M 82 MGKGKGNVEYWVALIQPGKVLYEMDGV--PEELAREAFKLAAAKLPIKTTFVTKT 134 (136)
T ss_dssp SCSSCCEEEEEEEEECTTCEEEEEESS--CHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred CCCCCCCCCEEEEEECCCCEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 999999999999999999999999996 89999999999999999999999864
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=99.69 E-value=1.9e-17 Score=120.63 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=45.9
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceE
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQK 50 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~R 50 (122)
|...+|+|++|||||+||||||||+++ .++++|+||||+|++|||++|+
T Consensus 70 MG~GKG~~~~wva~Vk~G~ilfEi~g~-~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 70 MGGGKGAIDHYVTPVKAGRLVVEMGGR-CEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred cccCCCCccEEEEEECCCCEEEEEecc-CCHHHHHHHHHHHHhhCCCCCC
Confidence 677789999999999999999999994 6999999999999999999985
No 11
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=99.68 E-value=9.5e-18 Score=124.80 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=48.4
Q ss_pred CCCCCCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe
Q psy1816 1 MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS 54 (122)
Q Consensus 1 MRgAFGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis 54 (122)
|...+|+|++|||||+||||||||++. +++.|+|||++|++|||++|+|+++
T Consensus 83 MG~GKG~~~~wva~Vk~G~ilfEi~gv--~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 83 MGSGKGSPEYWVAVVKPGRILYEISGV--AENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp SSCCCSCSSCCCCCCCTTCEEEEECSS--CTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred ccccCCCceEEEEEECCCCEEEEEecC--CHHHHHHHHHHHHhhCCCcEEEEec
Confidence 667788999999999999999999985 8899999999999999999999863
No 12
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=99.62 E-value=4.1e-17 Score=122.35 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=47.9
Q ss_pred CCCC--CCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeC
Q psy1816 2 RGAY--GKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 55 (122)
Q Consensus 2 RgAF--GKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~ 55 (122)
|..+ |+|++|||||+||||||||++. +++.|+|||++|++|||++|+|++++
T Consensus 83 RMG~GKG~~~~wva~Vk~G~ilfEi~gv--~~~~A~eAlr~A~~KLP~~~kiv~~~ 136 (142)
T 2zjr_J 83 RMGKGKGAVEYWVSVVKPGRVMFEVAGV--TEEQAKEAFRLAGHKLPIQTKMVKRE 136 (142)
T ss_dssp CCSSSCCTTSEEBCCBCTTEEEECCCSS--CSTTTTTHHHHHHHTCSSCEEEECSC
T ss_pred cccccCCCCCEEEEEECCCCEEEEEeCC--CHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 4455 8999999999999999999985 88999999999999999999999876
No 13
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=54.60 E-value=6.4 Score=25.88 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=26.2
Q ss_pred EeeCCCeEEEEEeCCC-C--HHHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 14 RVNIGQPIMSVRSSDK-F--KPAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~-~--~e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
++++|++|.+|.+..- + .+.+.+.|+.+..+ +....+.+.+.
T Consensus 51 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~-~~~v~l~v~R~ 95 (108)
T 3cbz_A 51 RIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK-PGPIVLTVAKS 95 (108)
T ss_dssp CCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS-SSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC-CCeEEEEEEeC
Confidence 5888899998876532 2 56677777776332 33455655543
No 14
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=52.52 E-value=11 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=17.7
Q ss_pred EeeCCCeEEEEEeCCCC---HHHHHHHHHHhh
Q psy1816 14 RVNIGQPIMSVRSSDKF---KPAVIEALRRAK 42 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~~---~e~AkEALRRAk 42 (122)
++++|..|++|-+.+-. .+.|.+.|+.+.
T Consensus 59 ~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~ 90 (109)
T 1wi4_A 59 RLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90 (109)
T ss_dssp SCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHccc
Confidence 46777777777665331 455666666665
No 15
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=50.98 E-value=18 Score=26.46 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=32.3
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHh----hccCCC
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRA----KFKFPG 47 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRA----k~KLPg 47 (122)
.+.+-++.+|+.++-|.+-..|...|-+|++-+ |...|.
T Consensus 80 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 122 (149)
T 2q5w_E 80 VHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPI 122 (149)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEEcccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhhCCE
Confidence 467889999999999999888999999887654 566676
No 16
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=50.96 E-value=18 Score=26.39 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=32.6
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHH----hhccCCC
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRR----AKFKFPG 47 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRR----Ak~KLPg 47 (122)
.+.+-++.+|+.++-|.+-..|...|-+|++. -|...|.
T Consensus 88 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 130 (147)
T 2wp4_A 88 AHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPI 130 (147)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCE
Confidence 46788999999999999988899999888764 4666776
No 17
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=50.38 E-value=19 Score=26.35 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=32.2
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHh----hccCCC
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRA----KFKFPG 47 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRA----k~KLPg 47 (122)
.+.+-++.+|+.++-|.+-..|...|-+|++-+ |...|.
T Consensus 82 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 124 (150)
T 1fm0_E 82 IHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPF 124 (150)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhcCCE
Confidence 467889999999999999888999998887654 566676
No 18
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=50.30 E-value=24 Score=25.95 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=32.7
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHH----hhccCCC
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRR----AKFKFPG 47 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRR----Ak~KLPg 47 (122)
.+.+-++.+|+.++-|.+-..|...|-+|++- -|...|.
T Consensus 79 ~HR~G~l~~Ge~~v~VaVss~HR~~Af~A~~~~id~lK~~~Pi 121 (148)
T 3rpf_A 79 AHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPI 121 (148)
T ss_dssp EEEEEEEETTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEcccCCCCEEEEEEEEcccHHHHHHHHHHHHHHHHhcCCE
Confidence 57888999999999999998999999988754 4666676
No 19
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=50.19 E-value=20 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=28.8
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHh
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRA 41 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRA 41 (122)
.+++.+|.+|+.++-|.+-..|...|-+|++-+
T Consensus 85 ~HR~G~l~~ge~~v~Vav~s~HR~~Af~A~~~~ 117 (135)
T 4ap8_A 85 FHRLGLVPVSEASIIIAVSSAHRAASLEAVSYA 117 (135)
T ss_dssp EEECEEEETTSEEEEEEEEESSHHHHHHHHHHH
T ss_pred hhhcccccCCCeEEEEEEEccCHHHHHHHHHHH
Confidence 467889999999999999888999999988755
No 20
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=46.99 E-value=17 Score=26.70 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=34.1
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHH----hhccCCC-ceEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRR----AKFKFPG-RQKI 51 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRR----Ak~KLPg-r~RI 51 (122)
.+.+-++.+|+.++-|.+-..|...|-+|++- -|...|. +..+
T Consensus 86 ~HR~G~l~vGe~iv~VaVss~HR~~Af~A~~~~iD~lK~~aPiWKkE~ 133 (154)
T 2omd_A 86 HHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEI 133 (154)
T ss_dssp EEECEEEETTSCCEEEEEEESSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred EEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 46788999999999999888899999888765 4666776 4443
No 21
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=44.98 E-value=38 Score=25.10 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=45.4
Q ss_pred EeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhcCceeecCCCCceeeeeecCC
Q psy1816 14 RVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRTSIISTPKSVFFPIFQGS 93 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~~~~~~~~~ 93 (122)
-+.-|.+||+-.......+...|+.-.+.+-++.+.-+ .+.+|+..+.+..=.-....+.-.|+-|+...
T Consensus 42 yI~SGNvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~v----------rs~~el~~i~~~~Pf~~~~~~~~~~v~F~~~~ 111 (183)
T 2hiy_A 42 YINSGNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFSL----------LSLEDFEAELENLPAWWSRDLARKDFLFYTEG 111 (183)
T ss_dssp ETTTTEEEEEECSCHHHHHHHHHHHHHHHCTTCCCCEE----------EEHHHHHHHHTTCCGGGGSCCSEEEEEEECTT
T ss_pred EEecCCEEEecCCCHHHHHHHHHHHHHHhcCCCCCEEE----------ecHHHHHHHHHhCCCCccCCCcEEEEEEECCC
Confidence 35779999986531122344455555566667766444 46788988887665432222445677788777
Q ss_pred CCCc
Q psy1816 94 PTLS 97 (122)
Q Consensus 94 ~~~~ 97 (122)
|..+
T Consensus 112 ~~~~ 115 (183)
T 2hiy_A 112 LDVD 115 (183)
T ss_dssp CCHH
T ss_pred CChH
Confidence 6543
No 22
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=44.55 E-value=2.8 Score=26.06 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=17.8
Q ss_pred EEeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
|.+++|++|.+|.+.+- ....+..+++.+
T Consensus 45 agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 76 (87)
T 4e34_A 45 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ 76 (87)
T ss_dssp SCCCTTEEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 46777788888765532 345556666544
No 23
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.41 E-value=21 Score=23.37 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=28.9
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
.+++|++|.+|-+.+- ....+..+++.+.........+.+.+.
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~ 105 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 105 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcc
Confidence 6889999999987643 246677777777654444556666554
No 24
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=43.63 E-value=26 Score=29.71 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.6
Q ss_pred EEeeCCCeEEEEEeCCCCHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDKFKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~~~e~AkEALRRA 41 (122)
.+|+.|++|++|....+..+.|.+.++.|
T Consensus 378 ~~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 406 (423)
T 2dsj_A 378 DRVERGEALALVYHRRRGLEEALGHLREA 406 (423)
T ss_dssp CEECTTSEEEEEEECSSSHHHHHHHHHHH
T ss_pred CEeCCCCeEEEEEeCCccHHHHHHHHHhC
Confidence 37899999999999877889999988887
No 25
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=42.71 E-value=9.3 Score=27.41 Aligned_cols=16 Identities=56% Similarity=0.785 Sum_probs=13.8
Q ss_pred eecCCCCCchhHHhhc
Q psy1816 89 IFQGSPTLSEEEIIES 104 (122)
Q Consensus 89 ~~~~~~~~~~~~~~~~ 104 (122)
++-|-|.||||++|+-
T Consensus 11 ihIGLPeLsEe~liei 26 (110)
T 3ueb_A 11 IHIGLPELSEEQLIEI 26 (110)
T ss_dssp EEEECTTSCHHHHHHH
T ss_pred EEecCCccCHHHHHHH
Confidence 5779999999999874
No 26
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=41.61 E-value=16 Score=23.45 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=18.4
Q ss_pred EEEeeCCCeEEEEEeCCC---CHHHHHHHHHH
Q psy1816 12 VARVNIGQPIMSVRSSDK---FKPAVIEALRR 40 (122)
Q Consensus 12 vARVkpGqVIfeVr~~~~---~~e~AkEALRR 40 (122)
++.+++|++|++|.+..- +.+.+.+.|+.
T Consensus 53 ~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 84 (101)
T 2yt7_A 53 SGALSIGDRLTAINGTSLVGLPLAACQAAVRE 84 (101)
T ss_dssp GSSCCTTCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 345777888888776643 45556666655
No 27
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=41.60 E-value=11 Score=25.46 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=15.9
Q ss_pred eeCCCeEEEEEeCCCC---HHHHHHHHHHh
Q psy1816 15 VNIGQPIMSVRSSDKF---KPAVIEALRRA 41 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~---~e~AkEALRRA 41 (122)
+++|++|.+|.+.+-. .+.+.++|+.+
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 107 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA 107 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 6777777777655321 35555555554
No 28
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=41.50 E-value=12 Score=24.74 Aligned_cols=26 Identities=12% Similarity=0.392 Sum_probs=13.5
Q ss_pred eeCCCeEEEEEeCCCC---HHHHHHHHHH
Q psy1816 15 VNIGQPIMSVRSSDKF---KPAVIEALRR 40 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~---~e~AkEALRR 40 (122)
+++|.+|.+|.+.+-. .+.+.++|+.
T Consensus 55 L~~GD~Il~ING~~v~~~~~~~~~~~l~~ 83 (97)
T 2ejy_A 55 LHVGDEILEINGTNVTNHSVDQLQKAMKE 83 (97)
T ss_dssp CCTTCEEEEETTBCCCSSCSHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 5566666666555332 3444445544
No 29
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=41.07 E-value=62 Score=21.21 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=31.4
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RI 51 (122)
-.|||--..-|+|.+++.+. +.+.++|..+-.+-|...+|
T Consensus 32 L~G~V~N~~dG~Vei~~~G~----~~~v~~f~~~l~~gP~~a~V 71 (91)
T 1w2i_A 32 VNGWVRNLPDGSVEAVLEGD----EERVEALIGWAHQGPPLARV 71 (91)
T ss_dssp CEEEEEECTTSCEEEEEEEE----HHHHHHHHHHTTTCSTTCEE
T ss_pred CeEEEEECCCCCEEEEEEeC----HHHHHHHHHHHHhCCCCcEE
Confidence 35899999999999999986 45567777776688877776
No 30
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=40.71 E-value=6 Score=25.08 Aligned_cols=40 Identities=10% Similarity=0.265 Sum_probs=25.6
Q ss_pred EEeeCCCeEEEEEeCC---CCHHHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 13 ARVNIGQPIMSVRSSD---KFKPAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~---~~~e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
.++++|++|.+|.+.+ ...+.+.+.++.+. +...+.+.+.
T Consensus 38 G~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~----~~v~L~v~~~ 80 (88)
T 3e17_A 38 GNLHEGDIILKINGTVTENMSLTDARKLIEKSR----GKLQLVVLRD 80 (88)
T ss_dssp CCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT----TEEEEEECCC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEeCC
Confidence 3588889999987653 35666777777653 4455555443
No 31
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=39.80 E-value=14 Score=23.47 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=19.7
Q ss_pred eeCCCeEEEEEeCCC-C--HHHHHHHHHHhhccCCCceEEEEeC
Q psy1816 15 VNIGQPIMSVRSSDK-F--KPAVIEALRRAKFKFPGRQKIYVSK 55 (122)
Q Consensus 15 VkpGqVIfeVr~~~~-~--~e~AkEALRRAk~KLPgr~RIvis~ 55 (122)
+++|.+|.+|.+.+- + .+.+.++|+.+ +....+.+.+
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~r 97 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA----GNPVVFMVQS 97 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSSEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCcEEEEEEE
Confidence 677777777765432 1 34455555443 3444554443
No 32
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=39.73 E-value=17 Score=24.25 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=23.2
Q ss_pred EeeCCCeEEEEEeCC---CCHHHHHHHHHHhhccCCCceEEEEeCCCc
Q psy1816 14 RVNIGQPIMSVRSSD---KFKPAVIEALRRAKFKFPGRQKIYVSKKWG 58 (122)
Q Consensus 14 RVkpGqVIfeVr~~~---~~~e~AkEALRRAk~KLPgr~RIvis~~~g 58 (122)
++++|++|.+|.+.+ .+.+.+.+.++.+. ....+.+.+..+
T Consensus 68 ~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~~~~~ 111 (114)
T 2gzv_A 68 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK----GEVTIHYNKLQY 111 (114)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC----SEEEEEEECCCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEeccc
Confidence 377888888886653 24455555555432 344555555444
No 33
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=39.40 E-value=26 Score=29.70 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.4
Q ss_pred EEeeCCCeEEEEEeCCCCHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDKFKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~~~e~AkEALRRA 41 (122)
.+|+.|++|++|....+..+.|.+.++.|
T Consensus 386 ~~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 414 (433)
T 1brw_A 386 DRVQKGEALATIHSNRPDVLDVKEKIEAA 414 (433)
T ss_dssp CEECTTCEEEEEEESSSCCHHHHHHHHTT
T ss_pred CEECCCCeEEEEEcCCccHHHHHHHHHhc
Confidence 37899999999999877888999888887
No 34
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=39.16 E-value=19 Score=24.01 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=17.4
Q ss_pred EeeCCCeEEEEEeCCC----CHHHHHHHHHH
Q psy1816 14 RVNIGQPIMSVRSSDK----FKPAVIEALRR 40 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~----~~e~AkEALRR 40 (122)
++++|++|.+|.+.+- ..+.+.++|+.
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~ 102 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQ 102 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence 4778888888877543 34555555555
No 35
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=39.03 E-value=71 Score=24.90 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=42.9
Q ss_pred CceeEEEeeC--CCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe---C--------CCccccc-CHHHHHhhhhc
Q psy1816 8 PQGTVARVNI--GQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS---K--------KWGFTKY-DREEYETLRDQ 73 (122)
Q Consensus 8 P~G~vARVkp--GqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis---~--------~~gFT~~-~~~e~~~~~~e 73 (122)
|...|.+..+ |+.|. |.|- .......+|... +|.+..+.++ + +-.|.-. ++++|++++++
T Consensus 93 ~Ye~V~~~~~~~~r~iv-l~GP--gK~tl~~~L~~~---~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~ 166 (295)
T 1kjw_A 93 SYETVTQMEVHYARPII-ILGP--TKDRANDDLLSE---FPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQA 166 (295)
T ss_dssp CEEEEEEEECCSCCCEE-EEST--THHHHHHHHHHH---CTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHT
T ss_pred CcceeeeecCCCCCEEE-EECC--CHHHHHHHHHhh---CccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHC
Confidence 3456666643 45444 4453 466666666542 3322222221 1 3345556 99999999999
Q ss_pred CceeecCCCCce
Q psy1816 74 NRTSIISTPKSV 85 (122)
Q Consensus 74 ~~l~~~g~~~~~ 85 (122)
|.++-.+...|.
T Consensus 167 g~flE~~~~~g~ 178 (295)
T 1kjw_A 167 HKFIEAGQYNSH 178 (295)
T ss_dssp TCEEEEEEETTE
T ss_pred CCcEEEEEEcCc
Confidence 999977766664
No 36
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=38.99 E-value=25 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=15.4
Q ss_pred eeCCCeEEEEEeCCCC---HHHHHHHHHHh
Q psy1816 15 VNIGQPIMSVRSSDKF---KPAVIEALRRA 41 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~---~e~AkEALRRA 41 (122)
+++|++|.+|.+..-. .+.+.++|+.+
T Consensus 57 l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 86 (111)
T 2dlu_A 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNC 86 (111)
T ss_dssp CCSSCEEEEESSCCCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 6777777777665432 34444555543
No 37
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=38.96 E-value=22 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=18.2
Q ss_pred EEeeCCCeEEEEEeCCCCHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDKFKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~~~e~AkEALRRA 41 (122)
.+|+.||+|+++... ..+.++..|..|
T Consensus 77 ~~V~kGq~L~~ld~~--~l~~a~~~l~~a 103 (359)
T 3lnn_A 77 DEVKAGDVLFTIDSA--DLAQANSDAAKA 103 (359)
T ss_dssp CEECTTCEEEEEECS--SHHHHHHHHHHH
T ss_pred CEEcCCCEEEEEChH--HHHHHHHHHHHH
Confidence 368999999999864 554444444443
No 38
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=38.81 E-value=32 Score=21.34 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=23.8
Q ss_pred eeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 15 VNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 15 VkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
+++|++|.+|.+.+- +.+.+.++|+.+ .....+.+.+.
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~ 85 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS----GKNVTLLVCGK 85 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS----CSEEEEEEEC-
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEeC
Confidence 788999999977644 455566666543 44555655543
No 39
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=38.12 E-value=15 Score=22.86 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=21.0
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
++++|++|.+|.+.+- ..+.+...++.+ ..+..+.+.+.
T Consensus 47 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~ 88 (92)
T 2qg1_A 47 RLMQGDQILMVNGEDVRNATQEAVAALLKCS----LGTVTLEVGRI 88 (92)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEcc
Confidence 3788888888866532 224444444433 23445555544
No 40
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=35.98 E-value=64 Score=20.97 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=29.2
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RI 51 (122)
-.|||--...|+|.+++.+. +.+.++|..+-.+-|...+|
T Consensus 30 l~G~V~N~~dG~Vei~~eG~----~~~i~~f~~~l~~gP~~a~V 69 (88)
T 1ulr_A 30 LSGYAENLPDGRVEVVAEGP----KEALELFLHHLKQGPRLARV 69 (88)
T ss_dssp CEEEEEECTTSCEEEEEESC----HHHHHHHHHHHHHCSTTCEE
T ss_pred CeEEEEECCCCcEEEEEEeC----HHHHHHHHHHHHhCCCCcEE
Confidence 36899999999999999876 44455565555567776666
No 41
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=35.72 E-value=21 Score=23.32 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=24.3
Q ss_pred EeeCCCeEEEEEeCCC----CHHHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 14 RVNIGQPIMSVRSSDK----FKPAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~----~~e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
++++|++|.+|.+.+- ..+.+..+++.+ .....+.+.+.
T Consensus 67 ~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~----~~~v~l~v~R~ 109 (117)
T 2o2t_A 67 RLKETDQILAINGQALDQTITHQQAISILQKA----KDTVQLVIARG 109 (117)
T ss_dssp CCCTTCEEEEETTEECCTTSCHHHHHHHHHHC----CSEEEEEEESS
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcC----CCEEEEEEEeC
Confidence 4888999999876533 455666666653 33445555543
No 42
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=35.69 E-value=35 Score=29.06 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=23.7
Q ss_pred EEeeCCCeEEEEEeCCCCHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDKFKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~~~e~AkEALRRA 41 (122)
.+|+.|++|++|...+...+.|.+.++.|
T Consensus 389 ~~V~~g~~l~~i~~~~~~~~~a~~~~~~a 417 (436)
T 3h5q_A 389 DKVEEGESLLTIHSNRQDVDDVVKKLDSS 417 (436)
T ss_dssp CEECTTSEEEEEEESSSCCHHHHHHHHHH
T ss_pred CEeCCCCeEEEEeCChHhHHHHHHHHHhc
Confidence 37899999999995566778888888776
No 43
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=35.64 E-value=33 Score=21.03 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=13.8
Q ss_pred eeCCCeEEEEEeCCCC---HHHHHHHHHHh
Q psy1816 15 VNIGQPIMSVRSSDKF---KPAVIEALRRA 41 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~---~e~AkEALRRA 41 (122)
+++|++|.+|.+.+-. .+.+.++|+.+
T Consensus 44 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 73 (87)
T 2pa1_A 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQS 73 (87)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 5666666666554321 24444444443
No 44
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=35.43 E-value=45 Score=20.90 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=7.2
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|.+|.+.
T Consensus 55 L~~GD~I~~ing~ 67 (96)
T 2ego_A 55 LTPGDTIASVNGL 67 (96)
T ss_dssp CCTTCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 4555666665544
No 45
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=35.42 E-value=47 Score=21.10 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=15.4
Q ss_pred eeCCCeEEEEEeCCC---CHHHHHHHHHHhh
Q psy1816 15 VNIGQPIMSVRSSDK---FKPAVIEALRRAK 42 (122)
Q Consensus 15 VkpGqVIfeVr~~~~---~~e~AkEALRRAk 42 (122)
+++|++|.+|.+.+- ....+...++.+.
T Consensus 63 L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 93 (107)
T 3nfk_A 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKASC 93 (107)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred cCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence 677777777755422 2244455555543
No 46
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=35.39 E-value=19 Score=24.04 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=17.8
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
++++|++|.+|.+.+- ....+.++++.+
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 101 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4788888888876533 345555566554
No 47
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=34.91 E-value=25 Score=22.61 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=22.2
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
++++|++|++|.+..- ....+..+++.+ .....+.+.+.
T Consensus 54 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~ 95 (110)
T 1um1_A 54 RLSLGDRILEVNGSSLLGLGYLRAVDLIRHG----GKKMRFLVAKS 95 (110)
T ss_dssp CCCTTCEEEEESSCBCSSCCHHHHHHHHHTC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeC
Confidence 3788888888877643 234444444442 33445555554
No 48
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=34.71 E-value=13 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=16.0
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHH
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRR 40 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRR 40 (122)
++++|++|.+|-+... ..+.+..+|+.
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 101 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKN 101 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 3777888888766533 34455555553
No 49
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.65 E-value=17 Score=23.06 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=14.5
Q ss_pred EeeCCCeEEEEEeCCC--CHHHHHHHHHH
Q psy1816 14 RVNIGQPIMSVRSSDK--FKPAVIEALRR 40 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~--~~e~AkEALRR 40 (122)
.+++|++|.+|.+.+- +.+.+.++|+.
T Consensus 47 ~L~~GD~I~~ing~~v~~~~~~~~~~l~~ 75 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPVGSDPRALQELLRN 75 (91)
T ss_dssp CCCTTCEEEEETTEECTTCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCHHHHHHHHHc
Confidence 3566666666655432 44445555544
No 50
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=34.21 E-value=8.6 Score=24.33 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=16.4
Q ss_pred EEeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
|.+++|+.|.+|.+.+- +.+.+.+.|+.+
T Consensus 42 agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 73 (88)
T 1kwa_A 42 GTLHVGDEIREINGISVANQTVEQLQKMLREM 73 (88)
T ss_dssp TCCCTTCEEEEETTEEGGGSCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence 44677777777755532 344555555554
No 51
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=33.95 E-value=29 Score=27.18 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCCceeEEEeeCC-CeEEEEEeCCCCHHHHHHHHHHh---hccCCCceEE
Q psy1816 6 GKPQGTVARVNIG-QPIMSVRSSDKFKPAVIEALRRA---KFKFPGRQKI 51 (122)
Q Consensus 6 GKP~G~vARVkpG-qVIfeVr~~~~~~e~AkEALRRA---k~KLPgr~RI 51 (122)
|.+.||+-|-+.| +.||-=.|..-+.+.|.+-.++. .+++|-++|.
T Consensus 163 ge~iG~~lRt~~~~kPlyVS~Gh~i~l~~A~~~v~~~~~~~yRlPEP~R~ 212 (225)
T 2w36_A 163 EEIIGCVIRTKEGSAPIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRL 212 (225)
T ss_dssp TEEEEEEECCSTTSCCEEEEECSSCCHHHHHHHHHHHCCTTCSSCHHHHH
T ss_pred CEEEEEEEEcCCCccCEEEeCCCCcCHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 6677888887766 56663334556888888755543 5889988775
No 52
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=33.77 E-value=91 Score=20.81 Aligned_cols=41 Identities=7% Similarity=-0.063 Sum_probs=30.3
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhc-cCCCceEEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKF-KFPGRQKIY 52 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~-KLPgr~RIv 52 (122)
-.|||--...|+|.+++.+. +.+.++|..+-. +-|...+|.
T Consensus 39 L~G~V~N~~dG~Vei~~eG~----~~~l~~f~~~l~~~gP~~a~V~ 80 (102)
T 1urr_A 39 VRGWCMNTRDGTVKGQLEAP----MMNLMEMKHWLENNRIPNAKVS 80 (102)
T ss_dssp CEEEEEECTTSCEEEEEEEC----HHHHHHHHHHHHHCCSTTCEEE
T ss_pred CcEEEEECCCCCEEEEEEcC----HHHHHHHHHHHHhcCCCccEEE
Confidence 36899999999999999986 444566666655 677777663
No 53
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.70 E-value=89 Score=19.62 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=24.0
Q ss_pred eeCCCeEEEEEeCCCC---HHHHHHHHHHhhccCCCceEEEEeCCCc
Q psy1816 15 VNIGQPIMSVRSSDKF---KPAVIEALRRAKFKFPGRQKIYVSKKWG 58 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~---~e~AkEALRRAk~KLPgr~RIvis~~~g 58 (122)
+++|++|.+|.+.+-. .+.+.++|+.+ .....+.+.+..+
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~~~ 90 (102)
T 2d90_A 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKG----GDQTTLLVLDKEA 90 (102)
T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHHS----TTEEEEEECSTTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEECCC
Confidence 7889999999876432 24555555543 3345666654433
No 54
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=33.10 E-value=96 Score=20.70 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=30.2
Q ss_pred ceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEE
Q psy1816 9 QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIY 52 (122)
Q Consensus 9 ~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIv 52 (122)
.|||--..-|+|.+++.+. +.+.++|..+-.+-|...+|.
T Consensus 41 ~G~VrN~~dG~Vei~~eG~----~~~l~~f~~~l~~gPp~A~V~ 80 (98)
T 3trg_A 41 TGWVKNLSHGDVELVACGE----RDSIMILTEWLWEGPPQAAVS 80 (98)
T ss_dssp EEEEEECTTSCEEEEEEEE----HHHHHHHHHHTTTCSTTCEEE
T ss_pred eEEEEECCCCEEEEEEEEC----HHHHHHHHHHHHhCCCCcEEE
Confidence 5899888889999999986 455666666666667776663
No 55
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=38.17 E-value=9.7 Score=25.49 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=18.4
Q ss_pred EEeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
|.+++|++|.+|.+.+- ..+.+..+++.+
T Consensus 70 aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~ 101 (112)
T 2lob_A 70 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ 101 (112)
Confidence 56899999999987643 223344444443
No 56
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=31.82 E-value=81 Score=21.09 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=27.4
Q ss_pred eeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q psy1816 15 VNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RI 51 (122)
+++|+.+..|.+.....+...+.+.+|+.+++...++
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~~~~ 46 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRV 46 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTTSEE
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccCcEE
Confidence 5788888888876666888888888888777543333
No 57
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=31.65 E-value=16 Score=24.74 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=18.7
Q ss_pred EeeCCCeEEEEEeCC---CCHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSD---KFKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~---~~~e~AkEALRRA 41 (122)
++++|++|++|.+.. .....|.+.|+.+
T Consensus 73 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 103 (127)
T 1wg6_A 73 RLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103 (127)
T ss_dssp TSCSCCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence 478888888887642 2245667777765
No 58
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=31.39 E-value=19 Score=23.13 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=20.1
Q ss_pred eeCCCeEEEEEeCCCC---HHHHHHHHHHhhccCCCceEEEEeC
Q psy1816 15 VNIGQPIMSVRSSDKF---KPAVIEALRRAKFKFPGRQKIYVSK 55 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~---~e~AkEALRRAk~KLPgr~RIvis~ 55 (122)
+++|++|++|.+..-. ...+..+|+.+ .....+.+.+
T Consensus 57 L~~GD~I~~vng~~v~~~~~~~~~~~l~~~----g~~v~l~v~R 96 (105)
T 1wha_A 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAA----SPTIALLLER 96 (105)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHTSC----CSCEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEE
Confidence 7788888888765331 34444444433 3344554443
No 59
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=31.32 E-value=27 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=17.3
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
++++|++|.+|.+.+- ..+.+.+.|+.+
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 92 (108)
T 2d92_A 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKAV 92 (108)
T ss_dssp CCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 3777788888776533 245555566554
No 60
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=31.23 E-value=22 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=16.8
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHH
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRR 40 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRR 40 (122)
++++|++|.+|.+.+- ....+..+++.
T Consensus 56 ~L~~GD~I~~ing~~v~~~~~~~~~~~~~~ 85 (106)
T 3axa_A 56 RLAAGDQLLSVDGRSLVGLSQERAAELMTR 85 (106)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4788888888876533 24445555544
No 61
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=31.10 E-value=62 Score=20.13 Aligned_cols=39 Identities=8% Similarity=0.235 Sum_probs=21.9
Q ss_pred EeeCCCeEEEEEeCCCCH---HHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 14 RVNIGQPIMSVRSSDKFK---PAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~~~---e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
-+++|++|.+|.+.+-.- ..+.++|+.+ +....+.+.++
T Consensus 47 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~ 88 (94)
T 1vb7_A 47 DLRPGDIIVAINGQSAENMLHAEAQSKIRQS----ASPLRLQLDRS 88 (94)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSSEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCcEEEEEEEC
Confidence 367888888887653321 4455555443 24455555543
No 62
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=31.06 E-value=19 Score=24.19 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=17.2
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
.+++|.+|++|-+.+- ....+...++.+
T Consensus 71 gL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~ 101 (120)
T 2iwo_A 71 KLRVGDRIVTICGTSTEGMTHTQAVNLLKNA 101 (120)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 6777777777766532 235555566655
No 63
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.68 E-value=19 Score=23.16 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=16.6
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
++++|++|.+|.+..- ....+..+++.+
T Consensus 60 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 90 (108)
T 1q7x_A 60 RIHKGDRVLAVNGVSLEGATHKQAVETLRNT 90 (108)
T ss_dssp CCCSSCEEEEETTEECBSCTTSHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3778888888766532 234455555543
No 64
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=29.17 E-value=26 Score=21.65 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=8.8
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|.+|.+.
T Consensus 52 l~~GD~I~~vng~ 64 (94)
T 2fe5_A 52 LQIGDRLLAVNNT 64 (94)
T ss_dssp CCTTCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 6677777777654
No 65
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=29.07 E-value=50 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.491 Sum_probs=18.1
Q ss_pred EEeeCCCeEEEEEeCCCCH---HHHHHHHHH
Q psy1816 13 ARVNIGQPIMSVRSSDKFK---PAVIEALRR 40 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~~~---e~AkEALRR 40 (122)
|-+++|++|.+|.+..-.- +.+.++|+.
T Consensus 60 agL~~GD~I~~ing~~v~~~~~~~~~~~l~~ 90 (114)
T 1uew_A 60 AKLKVGDRILAVNGQSIINMPHADIVKLIKD 90 (114)
T ss_dssp SSCCTTCBEEEETTBCTTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4578888888887764322 555556654
No 66
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=29.02 E-value=51 Score=28.32 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.3
Q ss_pred EEeeCCCeEEEEEeCCC-CHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDK-FKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~-~~e~AkEALRRA 41 (122)
.+|+.|++|++|....+ ..+.|.+.++.|
T Consensus 421 ~~V~~g~~l~~i~~~~~~~~~~a~~~~~~~ 450 (474)
T 1uou_A 421 QRLRRGTPWLRVHRDGPALSGPQSRALQEA 450 (474)
T ss_dssp CEECTTCEEEEEEESSSSCCHHHHHHHHHH
T ss_pred CEECCCCeEEEEEcCChhhHHHHHHHHHhc
Confidence 37899999999998865 477888888887
No 67
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=28.98 E-value=69 Score=19.86 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=7.8
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|.+|.+.
T Consensus 48 l~~GD~I~~ing~ 60 (96)
T 2v90_A 48 MQAGDRLVAVAGE 60 (96)
T ss_dssp CCTTEEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 4566666666554
No 68
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=28.56 E-value=15 Score=23.67 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.4
Q ss_pred EeeCCCeEEEEEeC
Q psy1816 14 RVNIGQPIMSVRSS 27 (122)
Q Consensus 14 RVkpGqVIfeVr~~ 27 (122)
++++|++|.+|.+.
T Consensus 51 ~L~~GD~I~~vng~ 64 (105)
T 2awx_A 51 KLQIGDKLLAVNSV 64 (105)
T ss_dssp CCCTTCEEEEETTE
T ss_pred CCCCCCEEEEECCE
Confidence 37788888888665
No 69
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=28.32 E-value=11 Score=23.59 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=6.1
Q ss_pred eeCCCeEEEEEe
Q psy1816 15 VNIGQPIMSVRS 26 (122)
Q Consensus 15 VkpGqVIfeVr~ 26 (122)
+++|++|++|.+
T Consensus 47 L~~GD~I~~ing 58 (93)
T 3o46_A 47 IHVGDELREVNG 58 (93)
T ss_dssp CCTTCEEEEETT
T ss_pred CCCCCEEEEECC
Confidence 455555555543
No 70
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=28.21 E-value=1.1e+02 Score=20.15 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=29.1
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhc-cCCCceEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKF-KFPGRQKI 51 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~-KLPgr~RI 51 (122)
-.|||--..-|+|.+++.+. +.+.++|..+-. +-|...+|
T Consensus 36 L~G~V~N~~dG~Vei~~eG~----~~~v~~f~~~l~~~~p~~a~V 76 (99)
T 2vh7_A 36 LVGWVQNTDRGTVQGQLQGP----ISKVRHMQEWLETRGSPKSHI 76 (99)
T ss_dssp CEEEEEECTTSCEEEEEEEE----HHHHHHHHHHHHHTCSTTCEE
T ss_pred CcEEEEECCCCCEEEEEEcC----HHHHHHHHHHHHhcCCCceEE
Confidence 36899999999999999986 445566666554 56766655
No 71
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=28.10 E-value=30 Score=21.22 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=21.5
Q ss_pred eeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeC
Q psy1816 15 VNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSK 55 (122)
Q Consensus 15 VkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~ 55 (122)
+++|++|.+|.+.+- +.+.+.++|+.+. ....+.+.+
T Consensus 42 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~r 81 (92)
T 3cyy_A 42 IQEGDVVLKINGTVTENMSLTDAKTLIERSK----GKLKMVVQR 81 (92)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTT----TEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CcEEEEEEe
Confidence 788888888876532 3445555555432 244555544
No 72
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.03 E-value=46 Score=22.47 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=23.9
Q ss_pred eCCCeEEEEEeCCCCHHHHHHHHHHhhccCCC
Q psy1816 16 NIGQPIMSVRSSDKFKPAVIEALRRAKFKFPG 47 (122)
Q Consensus 16 kpGqVIfeVr~~~~~~e~AkEALRRAk~KLPg 47 (122)
..+++.+.++.. +.+.|.++|+.++++++.
T Consensus 108 ~~~~~~~~i~~~--d~~~A~~~L~~~g~~v~~ 137 (144)
T 2f06_A 108 NNNVANVVIRPS--NMDKCIEVLKEKKVDLLA 137 (144)
T ss_dssp ETTEEEEEEEES--CHHHHHHHHHHTTCEEEC
T ss_pred cCCcEEEEEEeC--CHHHHHHHHHHcCCEEec
Confidence 556677777764 899999999999998754
No 73
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=27.57 E-value=1.3e+02 Score=19.89 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=32.3
Q ss_pred eCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccccCHHHHHhhhhc
Q psy1816 26 SSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQ 73 (122)
Q Consensus 26 ~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~~e~~~~~~e 73 (122)
+..|+.+.=+++|+..+.. +++.....|-+..+|.+|.+|.+.
T Consensus 10 t~~Qsl~~Q~~~l~~~~~~-----~i~~d~~Sg~~~~~Rp~l~~ll~~ 52 (124)
T 3pkz_A 10 SLDQNLERQLENLKTFGAE-----KIFTEKQSGKSIENRPILQKALNF 52 (124)
T ss_dssp STTSCHHHHHHHHHHTTCS-----EEEEEESCSSCSTTCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhCCc-----eEEEEcccCCChhcCHHHHHHHHH
Confidence 3456777778888887654 677766677655899999999874
No 74
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=27.41 E-value=16 Score=22.60 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=18.3
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHhh
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRAK 42 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRAk 42 (122)
++++|++|.+|.+.+- +...+..+++.+.
T Consensus 45 ~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 76 (90)
T 2q9v_A 45 RLRSGDELISVDGTPVIGKSHQLVVQLMQQAA 76 (90)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 3778888888876532 3455566666554
No 75
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=27.40 E-value=1e+02 Score=21.97 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcc--C-CCceEEEEeCCCcccccCHHHHHhhhhc
Q psy1816 32 PAVIEALRRAKFK--F-PGRQKIYVSKKWGFTKYDREEYETLRDQ 73 (122)
Q Consensus 32 e~AkEALRRAk~K--L-Pgr~RIvis~~~gFT~~~~~e~~~~~~e 73 (122)
+.|++||+.|... + +....+.+-.+.||+.++.+|..++.++
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 199 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAK 199 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHH
Confidence 4566677666432 2 3445665555668999999998887653
No 76
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=27.35 E-value=34 Score=23.77 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=27.8
Q ss_pred CceeEEEeeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCC-ceEEEEeCC
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPG-RQKIYVSKK 56 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPg-r~RIvis~~ 56 (122)
|-..+.++++|++|++|.+..- +.+.+.++|+.+. |+ ...+.+.+.
T Consensus 61 pA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~---~G~~v~l~V~R~ 110 (126)
T 1wif_A 61 AAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT---IGTVLQIKAYRG 110 (126)
T ss_dssp SGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC---SSCEEEEEEESS
T ss_pred HHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC---CCCEEEEEEEEC
Confidence 3333445899999999998765 3455555555422 23 345555554
No 77
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=27.23 E-value=18 Score=23.26 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=14.5
Q ss_pred eeCCCeEEEEEeCCC---CHHHHHHHHHH
Q psy1816 15 VNIGQPIMSVRSSDK---FKPAVIEALRR 40 (122)
Q Consensus 15 VkpGqVIfeVr~~~~---~~e~AkEALRR 40 (122)
+++|++|.+|.+.+- ....+..+++.
T Consensus 59 L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 87 (107)
T 1wf8_A 59 IQVNDQIVEVDGISLVGVTQNFAATVLRN 87 (107)
T ss_dssp SCTTCBEEEETTEECBSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 667777777765432 23444445544
No 78
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=26.65 E-value=12 Score=25.01 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=22.8
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeC
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSK 55 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~ 55 (122)
++++|++|.+|.+..- ..+.+.+.|+.+. ....+.+.+
T Consensus 63 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~r 103 (125)
T 3hpk_A 63 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK----GEVTIHYNK 103 (125)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHSC----SEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEE
Confidence 4778888888866533 3455666666643 334555544
No 79
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=26.57 E-value=16 Score=24.08 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=17.0
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
++++|.+|.+|.+.+- ....+...++.+
T Consensus 43 ~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~ 73 (106)
T 2la8_A 43 KLQRGDIITKFNGDALEGLPFQVCYALFKGA 73 (106)
T ss_dssp TCCTTCEEEEESSCBCSSSCHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence 4788888888877643 234444444443
No 80
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=26.32 E-value=70 Score=18.77 Aligned_cols=13 Identities=8% Similarity=0.465 Sum_probs=8.8
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|.+|.+.
T Consensus 40 l~~GD~I~~ing~ 52 (81)
T 2rcz_A 40 IQEGDVVLKINGT 52 (81)
T ss_dssp CCTTCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 6677777777654
No 81
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=26.17 E-value=81 Score=19.93 Aligned_cols=13 Identities=0% Similarity=0.140 Sum_probs=8.9
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|.+|.+.
T Consensus 54 L~~GD~I~~vng~ 66 (100)
T 1whd_A 54 LQQLDTVLQLNER 66 (100)
T ss_dssp CCSSCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 6677777777655
No 82
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=25.91 E-value=79 Score=23.17 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcc--CC-CceEEEEeCCCcccccCHHHHHhhhhc
Q psy1816 32 PAVIEALRRAKFK--FP-GRQKIYVSKKWGFTKYDREEYETLRDQ 73 (122)
Q Consensus 32 e~AkEALRRAk~K--LP-gr~RIvis~~~gFT~~~~~e~~~~~~e 73 (122)
+.|+.||+.|... +. ....|.+-.+.||..++.+|.+++.++
T Consensus 157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~ 201 (219)
T 3h4p_a 157 KLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDS 201 (219)
T ss_dssp HHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHH
Confidence 4566677776653 22 345555555568999999999888764
No 83
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=25.75 E-value=25 Score=21.95 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=13.6
Q ss_pred eeCCCeEEEEEeCCC-C--HHHHHHHHHH
Q psy1816 15 VNIGQPIMSVRSSDK-F--KPAVIEALRR 40 (122)
Q Consensus 15 VkpGqVIfeVr~~~~-~--~e~AkEALRR 40 (122)
+++|.+|.+|.+.+- + .+.+.++|+.
T Consensus 51 l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 79 (97)
T 2jil_A 51 IKPGDRLLSVDGIRLLGTTHAEAMSILKQ 79 (97)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 666777776655422 2 3444444443
No 84
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=25.73 E-value=13 Score=24.14 Aligned_cols=13 Identities=8% Similarity=0.399 Sum_probs=7.9
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|.+|.+.
T Consensus 54 l~~GD~I~~vng~ 66 (113)
T 2g5m_B 54 IQVNDLLVEVDGT 66 (113)
T ss_dssp SCTTCBEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 5666666666554
No 85
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=25.62 E-value=37 Score=22.86 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=24.5
Q ss_pred EeeCCCeEEEEEeCCCC---HHHHHHHHHHhhccCCCceEEEEeCC
Q psy1816 14 RVNIGQPIMSVRSSDKF---KPAVIEALRRAKFKFPGRQKIYVSKK 56 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~~---~e~AkEALRRAk~KLPgr~RIvis~~ 56 (122)
.+++|++|.+|-+.... .+.|.+.|+.+.. ....+.+++.
T Consensus 75 gL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~---~~v~l~v~r~ 117 (130)
T 1i16_A 75 TVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD---GPVTIVIRRK 117 (130)
T ss_dssp CCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCS---SEEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC---ceEEEEEEeC
Confidence 78889999998776332 3556666665532 2345555543
No 86
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=25.57 E-value=60 Score=26.10 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=17.6
Q ss_pred EeeCCCeEEEEEeCCCCHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDKFKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~~~e~AkEALRRA 41 (122)
+|+.||+|+++... ....|+..+..|
T Consensus 143 ~VkkGq~L~~ld~~--~l~~aq~~~~~a 168 (413)
T 3ne5_B 143 KVQKGTPLLDLTIP--DWVEAQSEYLLL 168 (413)
T ss_dssp EECTTCEEEEEECC--SSHHHHHHHHHH
T ss_pred EEcCCCEEEEEcCH--HHHHHHHHHHHH
Confidence 67889999999954 345555444444
No 87
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=25.28 E-value=33 Score=29.12 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=22.8
Q ss_pred EEeeCCCeEEEEEeCCC-CHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDK-FKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~-~~e~AkEALRRA 41 (122)
.+|+.|++|++|....+ ..+.|.+.++.|
T Consensus 391 ~~v~~g~~l~~i~~~~~~~~~~a~~~~~~~ 420 (440)
T 2tpt_A 391 DQVDGQRPLAVIHAKDENNWQEAAKAVKAA 420 (440)
T ss_dssp CEEBTTBCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEECCCCeEEEEecCCHhhHHHHHHHHHhc
Confidence 37899999999998754 456777777766
No 88
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=25.24 E-value=18 Score=23.51 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=23.9
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeCCC
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSKKW 57 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~~~ 57 (122)
++++|++|.+|.+.+- ....+..+++.+ +.+..+.+.+..
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~~ 92 (106)
T 4amh_A 50 KLQIGDKLLAVNNVALEEVTHEEAVTALKNT----SDFVYLKVAKPG 92 (106)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHSC----CSEEEEEEECCS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCC----CCeEEEEEEeCC
Confidence 4788888888876532 345555555543 345566665543
No 89
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=25.07 E-value=33 Score=24.58 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=21.3
Q ss_pred ecCCCCceeeeeecC-CCCCchhHHhhc
Q psy1816 78 IISTPKSVFFPIFQG-SPTLSEEEIIES 104 (122)
Q Consensus 78 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~ 104 (122)
|.|+|..=|++||.= ..+||++||-+-
T Consensus 22 PeGVP~~Dy~PLLALL~R~LtdeEV~~V 49 (112)
T 2m0n_A 22 PEGVPPTDRFPLLALLRRTLTEEQVQEV 49 (112)
T ss_dssp CCSCCSCSCCGGGGCCCSSCCHHHHHHH
T ss_pred CCCCCCCccHHHHHHhhccCCHHHHHHH
Confidence 678888889998874 457999997653
No 90
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=24.99 E-value=85 Score=21.55 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=30.7
Q ss_pred eeEEEeeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeCCCcccccCH
Q psy1816 10 GTVARVNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDR 64 (122)
Q Consensus 10 G~vARVkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~~~~ 64 (122)
.+.|.+++|++|++|-+.+- .-+.|.++|+.+.. -....+.+.+.....++..
T Consensus 45 ~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~--G~~v~L~V~R~g~~~p~~~ 100 (113)
T 3soe_A 45 QWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPV--GADVPLLILRGGPPSPTKT 100 (113)
T ss_dssp GGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCT--TCEEEEEEEESSCC-----
T ss_pred HHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--CCEEEEEEEECCccCcccc
Confidence 35677899999999976532 23456667765421 1256777777665555544
No 91
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=24.47 E-value=1.5e+02 Score=19.21 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=26.9
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RI 51 (122)
-.|||--..-|+|.+++.+. +.+.++|..+-.+=|.+.+|
T Consensus 30 l~G~V~N~~dG~Vei~~eG~----~~~i~~f~~~l~~~~p~a~V 69 (91)
T 2fhm_A 30 LAGWVKNRDDGRVEILAEGP----ENALQSFVEAVKNGSPFSKV 69 (91)
T ss_dssp CEEEEEECTTSCEEEEEEEC----HHHHHHHHHHHHTTCSSSEE
T ss_pred CeEEEEECCCCcEEEEEEeC----HHHHHHHHHHHHhCCCccEE
Confidence 36899988999999999986 33455555544443433655
No 92
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=24.18 E-value=29 Score=21.10 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=11.1
Q ss_pred eeCCCeEEEEEeCC
Q psy1816 15 VNIGQPIMSVRSSD 28 (122)
Q Consensus 15 VkpGqVIfeVr~~~ 28 (122)
+++|++|.+|.+.+
T Consensus 41 l~~GD~I~~ing~~ 54 (83)
T 2kv8_A 41 LRAGDQILAVNEIN 54 (83)
T ss_dssp CCTTCEEEEETTEE
T ss_pred CCCCCEEEEECCEE
Confidence 78889998887653
No 93
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=24.07 E-value=57 Score=26.29 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=28.8
Q ss_pred CCCCceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccC
Q psy1816 5 YGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKF 45 (122)
Q Consensus 5 FGKP~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KL 45 (122)
||||+ +++|+.|=.|.....+.+.|++.+++|...|
T Consensus 379 ygk~~-----~~~~rkmGhv~~~~~~~~~~~~~a~~~~~~l 414 (419)
T 4e4t_A 379 YGKEE-----ARVGRKMGHVNFTAEMRDDAVAAATACAQLL 414 (419)
T ss_dssp CCCSC-----CCTTCEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCC-----CCCCCceEEEEEEeCCHHHHHHHHHHHHHhc
Confidence 78875 5789998777777778999999888887655
No 94
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.06 E-value=1.1e+02 Score=18.63 Aligned_cols=14 Identities=21% Similarity=0.416 Sum_probs=9.1
Q ss_pred EeeCCCeEEEEEeC
Q psy1816 14 RVNIGQPIMSVRSS 27 (122)
Q Consensus 14 RVkpGqVIfeVr~~ 27 (122)
.+++|++|.+|.+.
T Consensus 48 gl~~GD~I~~vng~ 61 (93)
T 2dkr_A 48 GLKRGDQLLSVNGV 61 (93)
T ss_dssp CCCTTCBEEEETTE
T ss_pred CCCCCCEEEEECCE
Confidence 36677777777554
No 95
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.97 E-value=27 Score=22.32 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=19.3
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
++++|++|.+|.+.+- ..+.+.+.|+.+
T Consensus 52 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~ 82 (103)
T 1uep_A 52 RLHPGDELVYVDGIPVAGKTHRYVIDLMHHA 82 (103)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4889999999876533 345666667665
No 96
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=23.59 E-value=25 Score=23.01 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=19.4
Q ss_pred EEeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 13 ARVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 13 ARVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
|.+++|++|++|.+.+- ....+..+++.+
T Consensus 61 ~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 92 (117)
T 2csj_A 61 GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS 92 (117)
T ss_dssp HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred ccCCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence 55788999999887643 235566666654
No 97
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=23.23 E-value=16 Score=23.99 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=9.2
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|.+|.+.
T Consensus 68 L~~GD~Il~Vng~ 80 (112)
T 2r4h_A 68 MRIGDEILEINGE 80 (112)
T ss_dssp CCTTCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 6777777777654
No 98
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=23.22 E-value=1.1e+02 Score=24.42 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=29.0
Q ss_pred eeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCC
Q psy1816 15 VNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPG 47 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPg 47 (122)
++||+.|=-|.....+.+.+++.++++...||.
T Consensus 309 ~r~~rkmGhv~~~~~~~~~~~~~~~~~~~~~~~ 341 (355)
T 3eth_A 309 VRPGRKVGHLNLTDSDTSRLTATLEALIPLLPP 341 (355)
T ss_dssp CCTTCEEEEEEEECSCHHHHHHHHHHHGGGSCG
T ss_pred CCCCCeeEEEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 579999988887778999999999999999876
No 99
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.17 E-value=16 Score=23.28 Aligned_cols=13 Identities=8% Similarity=0.532 Sum_probs=8.3
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|++|.+.
T Consensus 57 l~~GD~I~~vng~ 69 (104)
T 2djt_A 57 LEVGDLVLHINGE 69 (104)
T ss_dssp CCTTCBEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 6666666666554
No 100
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=23.02 E-value=12 Score=23.58 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=14.7
Q ss_pred eeCCCeEEEEEeCCCC---HHHHHHHHHH
Q psy1816 15 VNIGQPIMSVRSSDKF---KPAVIEALRR 40 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~---~e~AkEALRR 40 (122)
+++|++|.+|.+.+-. ...+..+|+.
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 84 (98)
T 1ihj_A 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKE 84 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 6777777777655321 1444445543
No 101
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=22.87 E-value=1.3e+02 Score=19.37 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=23.5
Q ss_pred eeCCCeEEEEEeCCCCH---HHHHHHHHHhhccCCCceEEEEeC
Q psy1816 15 VNIGQPIMSVRSSDKFK---PAVIEALRRAKFKFPGRQKIYVSK 55 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~~---e~AkEALRRAk~KLPgr~RIvis~ 55 (122)
+++|++|.+|.+.+-.- ..+.++++.+ .....+.+.+
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~R 95 (114)
T 2edz_A 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKS----GNSVTLLVLD 95 (114)
T ss_dssp CCTTCEEEEESSSBCSSSCHHHHHHHHHHT----CSEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEE
Confidence 78899999998774422 5566666543 3344555554
No 102
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=22.84 E-value=1.5e+02 Score=19.63 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCHHHHHHHHHHhhcc-CCCceEEEEeCCCcccc
Q psy1816 19 QPIMSVRSSDKFKPAVIEALRRAKFK-FPGRQKIYVSKKWGFTK 61 (122)
Q Consensus 19 qVIfeVr~~~~~~e~AkEALRRAk~K-LPgr~RIvis~~~gFT~ 61 (122)
++.+++-+.+...+.+.+|++.++.. =||.-+|.+..=..+-.
T Consensus 58 k~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~~r 101 (112)
T 2eg2_A 58 KVKIEVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIR 101 (112)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEECSCCBC
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHhEEE
Confidence 45777878788899999999998765 57777888876544433
No 103
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=22.76 E-value=17 Score=26.40 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=17.6
Q ss_pred EeeCCCeEEEEEeCC---CCHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSD---KFKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~---~~~e~AkEALRRA 41 (122)
++++|.+|++|-+.. .....|...|+.+
T Consensus 129 ~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~ 159 (170)
T 3egg_C 129 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 159 (170)
T ss_dssp CCCTTCEEEEETTEECTTBCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 477888888876542 2345566666654
No 104
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=22.61 E-value=30 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=15.1
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHHh
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRRA 41 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRRA 41 (122)
++++|++|.+|.+.+- ..+.+..+|+.+
T Consensus 71 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~ 101 (118)
T 3b76_A 71 RIKTGDILLNVDGVELTEVSRSEAVALLKRT 101 (118)
T ss_dssp SSCTTCEEEEETTEEGGGSCHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3667777777765421 234445555543
No 105
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=22.52 E-value=11 Score=23.64 Aligned_cols=13 Identities=15% Similarity=0.486 Sum_probs=8.4
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|.+|.+|.+.
T Consensus 52 l~~GD~I~~vng~ 64 (96)
T 1d5g_A 52 IHKGDRVLAVNGV 64 (96)
T ss_dssp CCTTCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 6666777766554
No 106
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=22.46 E-value=88 Score=19.10 Aligned_cols=22 Identities=5% Similarity=-0.103 Sum_probs=10.2
Q ss_pred EEEeCCCcccccCHHHHHhhhh
Q psy1816 51 IYVSKKWGFTKYDREEYETLRD 72 (122)
Q Consensus 51 Ivis~~~gFT~~~~~e~~~~~~ 72 (122)
|+.-.+.-.+.++.+++.++..
T Consensus 52 I~~ing~~v~~~~~~~~~~~l~ 73 (90)
T 2he4_A 52 LIEVNGQNVEGLRHAEVVASIK 73 (90)
T ss_dssp EEEETTEECTTSCHHHHHHHHT
T ss_pred EEEECCEECCCCCHHHHHHHHH
Confidence 3333444444455455555443
No 107
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.43 E-value=42 Score=22.31 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=17.5
Q ss_pred eeCCCeEEEEEeCCC---CHHHHHHHHHH
Q psy1816 15 VNIGQPIMSVRSSDK---FKPAVIEALRR 40 (122)
Q Consensus 15 VkpGqVIfeVr~~~~---~~e~AkEALRR 40 (122)
+++|++|++|.+.+. +.+.+.++|+.
T Consensus 79 L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 107 (126)
T 2yuy_A 79 LCTGDRIIKVNGESVIGKTYSQVIALIQN 107 (126)
T ss_dssp CCSSCCCCEETTEECSSCCHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 678888888876543 45566666664
No 108
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=22.34 E-value=1.8e+02 Score=25.26 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=41.0
Q ss_pred ceeEEEeeC--CCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEe-----------CCCccccc-CHHHHHhhhhcC
Q psy1816 9 QGTVARVNI--GQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVS-----------KKWGFTKY-DREEYETLRDQN 74 (122)
Q Consensus 9 ~G~vARVkp--GqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis-----------~~~gFT~~-~~~e~~~~~~e~ 74 (122)
...|.+..+ ++.| -+.+- ......++|.. .+|.+..+.++ .+-.|.-. ++++|++++++|
T Consensus 520 Ye~V~~~~~~~~r~v-vl~GP--~K~tl~~~L~~---~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~ 593 (721)
T 2xkx_A 520 YETVTQMEVHYARPI-IILGP--TKDRANDDLLS---EFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAH 593 (721)
T ss_pred ceeeecccCCCCCEE-EEECC--CHHHHHHHHHH---hCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcC
Confidence 445555533 4443 44453 35666666654 23433333322 12345556 899999999999
Q ss_pred ceeecCCCCce
Q psy1816 75 RTSIISTPKSV 85 (122)
Q Consensus 75 ~l~~~g~~~~~ 85 (122)
.++-.+...|-
T Consensus 594 ~flE~~~~~g~ 604 (721)
T 2xkx_A 594 KFIEAGQYNSH 604 (721)
T ss_pred CceEEEEECCc
Confidence 99976665553
No 109
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=22.22 E-value=57 Score=20.39 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=7.7
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|.+|.+.
T Consensus 49 l~~GD~I~~vng~ 61 (97)
T 1n7e_A 49 IHIGDRILAINSS 61 (97)
T ss_dssp CCTTCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 5566666666544
No 110
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.20 E-value=11 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=15.5
Q ss_pred eeCCCeEEEEEeCCCC---HHHHHHHHH
Q psy1816 15 VNIGQPIMSVRSSDKF---KPAVIEALR 39 (122)
Q Consensus 15 VkpGqVIfeVr~~~~~---~e~AkEALR 39 (122)
+++|++|.+|.+.+-. ...+.++++
T Consensus 55 l~~GD~I~~vng~~v~~~~~~~~~~~~~ 82 (103)
T 1wfv_A 55 MRVGDQIIEINGESTRDMTHARAIELIK 82 (103)
T ss_dssp SCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 7888888888765322 344445555
No 111
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=22.18 E-value=53 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=6.8
Q ss_pred EeeCCCeEEEEEeC
Q psy1816 14 RVNIGQPIMSVRSS 27 (122)
Q Consensus 14 RVkpGqVIfeVr~~ 27 (122)
.+++|..|++|.+.
T Consensus 61 gL~~GD~Il~Ing~ 74 (118)
T 1v6b_A 61 GVVKGDEIMAINGK 74 (118)
T ss_dssp SSCTTCEEEEESSC
T ss_pred CCCCCCEEEEECCE
Confidence 34445555555444
No 112
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=22.03 E-value=95 Score=22.63 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcc--C-CCceEEEEeCC-CcccccCHHHHHhhhhcCcee
Q psy1816 32 PAVIEALRRAKFK--F-PGRQKIYVSKK-WGFTKYDREEYETLRDQNRTS 77 (122)
Q Consensus 32 e~AkEALRRAk~K--L-Pgr~RIvis~~-~gFT~~~~~e~~~~~~e~~l~ 77 (122)
+.|++||+.|... + +....+.+-.+ .||+.++.+|.+++.++=.++
T Consensus 161 ~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~~~ 210 (217)
T 1yar_H 161 DLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLI 210 (217)
T ss_dssp HHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHHHH
Confidence 3566677666332 2 33455544444 799999999999988765444
No 113
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=22.00 E-value=72 Score=20.51 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.3
Q ss_pred EeeCCCeEEEEEeC
Q psy1816 14 RVNIGQPIMSVRSS 27 (122)
Q Consensus 14 RVkpGqVIfeVr~~ 27 (122)
++++|++|.+|.+.
T Consensus 61 ~L~~GD~I~~vng~ 74 (116)
T 2dm8_A 61 RLWAGDQILEVNGV 74 (116)
T ss_dssp CCCTTCEEEEETTE
T ss_pred CCCCCCEEEEECCE
Confidence 47788888887665
No 114
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=21.69 E-value=50 Score=21.44 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=17.8
Q ss_pred EeeCCCeEEEEEeCCC---CHHHHHHHHHH
Q psy1816 14 RVNIGQPIMSVRSSDK---FKPAVIEALRR 40 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~---~~e~AkEALRR 40 (122)
++++|++|++|-+.+- ....+..+++.
T Consensus 68 ~L~~GD~Il~vng~~v~~~~~~~~~~~~~~ 97 (117)
T 2ehr_A 68 ALKTGDKILEVSGVDLQNASHSEAVEAIKN 97 (117)
T ss_dssp SCCTTCEEEEESSCBCTTCCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4888999999987643 24455555554
No 115
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=21.65 E-value=1.5e+02 Score=21.57 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=24.6
Q ss_pred EeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEEEEeCCCcccc
Q psy1816 14 RVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTK 61 (122)
Q Consensus 14 RVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RIvis~~~gFT~ 61 (122)
+|+.||.|.++. .++++.|.+ +..+-+++.+ ..|..
T Consensus 100 ~V~~G~~L~~~d---------~~~i~~~g~--~~~t~vvvtn-~~~~~ 135 (154)
T 2gpr_A 100 EVNAGDKLVTVD---------LKSVAKKVP--SIKSPIIFTN-NGGKT 135 (154)
T ss_dssp EECTTCEEEEEC---------HHHHHHHSS--CCCEEEEEEE-CSSCC
T ss_pred EEcCCCEEEEEC---------HHHHHhcCC--CCeEEEEEEC-CCcce
Confidence 688999999984 566777766 4566667655 55443
No 116
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=21.60 E-value=1.6e+02 Score=19.57 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=5.6
Q ss_pred EEEEeCCCCHHHH
Q psy1816 22 MSVRSSDKFKPAV 34 (122)
Q Consensus 22 feVr~~~~~~e~A 34 (122)
+-+++........
T Consensus 29 LD~rGl~CP~Pvl 41 (98)
T 1jdq_A 29 LDVRGEVCPVPDV 41 (98)
T ss_dssp EECSSCCSSHHHH
T ss_pred EeCCCCCCCHHHH
Confidence 4444444444433
No 117
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.30 E-value=1.2e+02 Score=18.97 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=20.8
Q ss_pred eeCCCeEEEEEeCCC---CHHHHHHHHHHhhccCCCceEEEEeCCC
Q psy1816 15 VNIGQPIMSVRSSDK---FKPAVIEALRRAKFKFPGRQKIYVSKKW 57 (122)
Q Consensus 15 VkpGqVIfeVr~~~~---~~e~AkEALRRAk~KLPgr~RIvis~~~ 57 (122)
+++|++|.+|.+.+- ....+..+++.+ .....+.+.+..
T Consensus 50 l~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~r~~ 91 (106)
T 2eei_A 50 VLADDHLIEVNGENVEDASHEEVVEKVKKS----GSRVMFLLVDKE 91 (106)
T ss_dssp CCSSEEEEEETTEECTTCCHHHHHHHHHHH----CSEEEEEECCTT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCeEEEEEEcCc
Confidence 677888888866533 234444455443 234445554443
No 118
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=21.24 E-value=68 Score=23.40 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=24.1
Q ss_pred CCcccccCHHHHHhhhhcCceeecCCCCce
Q psy1816 56 KWGFTKYDREEYETLRDQNRTSIISTPKSV 85 (122)
Q Consensus 56 ~~gFT~~~~~e~~~~~~e~~l~~~g~~~~~ 85 (122)
+-.|.-.++++|++++++|.++..+...|-
T Consensus 47 G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~ 76 (186)
T 1ex7_A 47 GKDYNFVSVDEFKSMIKNNEFIEWAQFSGN 76 (186)
T ss_dssp TTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CceeEeecHHHHHHHHHcCCEEEEEEEcCc
Confidence 346788999999999999999976655543
No 119
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=21.21 E-value=1.9e+02 Score=19.27 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=28.2
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhhccCCCceEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk~KLPgr~RI 51 (122)
-.|||--..-|+|.+.+.+. +.+.++|..+-.+=|...+|
T Consensus 42 L~G~V~N~~dG~Vei~~eG~----~~~i~~f~~~l~~gP~~A~V 81 (101)
T 2bjd_A 42 IKGYAKNLPDGSVEVVAEGY----EEALSKLLERIKQGPPAAEV 81 (101)
T ss_dssp CEEEEEECTTSCEEEEEEEE----HHHHHHHHHHHTTCSTTCEE
T ss_pred CeEEEEECCCCcEEEEEEeC----HHHHHHHHHHHHhCCCccEE
Confidence 36899999999999999986 34455555554444766666
No 120
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.03 E-value=40 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=12.5
Q ss_pred eeCCCeEEEEEeCCC---CHHHHHHHHH
Q psy1816 15 VNIGQPIMSVRSSDK---FKPAVIEALR 39 (122)
Q Consensus 15 VkpGqVIfeVr~~~~---~~e~AkEALR 39 (122)
+++|++|.+|.+.+. +...+.+.++
T Consensus 49 L~~GD~Il~Ing~~v~~~~~~~~~~~l~ 76 (90)
T 1y7n_A 49 VRVGHRIIEINGQSVVATPHEKIVHILS 76 (90)
T ss_dssp CCSSCEEEEETTEECTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 455666666654432 3444444444
No 121
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=20.97 E-value=1.6e+02 Score=19.16 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=27.2
Q ss_pred CceeEEEeeCCCeEEEEEeCCCCHHHHHHHHHHhh-ccCCCceEE
Q psy1816 8 PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAK-FKFPGRQKI 51 (122)
Q Consensus 8 P~G~vARVkpGqVIfeVr~~~~~~e~AkEALRRAk-~KLPgr~RI 51 (122)
-.|||--..-|+|.+++.+. +.+.++|..+- .+=|...+|
T Consensus 32 L~G~V~N~~dG~Vei~~eG~----~~~i~~f~~~l~~~gP~~a~V 72 (92)
T 2gv1_A 32 LTGYAKNLDDGSVEVVACGE----EGQVEKLMQWLKSGGPRSARV 72 (92)
T ss_dssp CCCEEEECSSSCEEEEECSC----HHHHHHHHHHHHHTSSTTSEE
T ss_pred CeEEEEECCCCcEEEEEEeC----HHHHHHHHHHhhccCCCceEE
Confidence 35899988999999999875 33445555444 333766665
No 122
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=20.82 E-value=19 Score=22.26 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=8.7
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|++|.+.
T Consensus 52 l~~GD~I~~vng~ 64 (97)
T 2iwn_A 52 IQIGDQIIAVDGT 64 (97)
T ss_dssp CCTTCEEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 6677777777654
No 123
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=20.77 E-value=54 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcc---CCCceEEEEeCCCcccccCHHHHHhhhh
Q psy1816 33 AVIEALRRAKFK---FPGRQKIYVSKKWGFTKYDREEYETLRD 72 (122)
Q Consensus 33 ~AkEALRRAk~K---LPgr~RIvis~~~gFT~~~~~e~~~~~~ 72 (122)
.|++||+.|... -+....+.+-.+.||+.++.+|..++.+
T Consensus 155 l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~ 197 (204)
T 1iru_L 155 LARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHE 197 (204)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHH
Confidence 455566655431 2445566555667888888777766654
No 124
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.67 E-value=18 Score=23.98 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=6.9
Q ss_pred eeCCCeEEEEEeC
Q psy1816 15 VNIGQPIMSVRSS 27 (122)
Q Consensus 15 VkpGqVIfeVr~~ 27 (122)
+++|++|++|.+.
T Consensus 61 l~~GD~Il~Ing~ 73 (117)
T 1v62_A 61 LHPGDHILSIDGT 73 (117)
T ss_dssp CCTTCBEEEETTE
T ss_pred CCCCCEEEEECCE
Confidence 4555555555443
No 125
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=20.43 E-value=35 Score=21.75 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=12.5
Q ss_pred EEeeCCCeEEEEEeC
Q psy1816 13 ARVNIGQPIMSVRSS 27 (122)
Q Consensus 13 ARVkpGqVIfeVr~~ 27 (122)
|.+++|++|++|.+.
T Consensus 54 agl~~GD~I~~vng~ 68 (107)
T 2h2b_A 54 GQLQENDRVAMVNGV 68 (107)
T ss_dssp TTBCTTCEEEEETTE
T ss_pred hCCCCCCEEEEECCE
Confidence 568899999999775
No 126
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=20.18 E-value=83 Score=25.97 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=33.2
Q ss_pred CCCeEEEEEeCCCCH-HHHHHHHHHhh-ccCCCceEEEEeCCCccccc
Q psy1816 17 IGQPIMSVRSSDKFK-PAVIEALRRAK-FKFPGRQKIYVSKKWGFTKY 62 (122)
Q Consensus 17 pGqVIfeVr~~~~~~-e~AkEALRRAk-~KLPgr~RIvis~~~gFT~~ 62 (122)
++.+++.+.|+..-- -...|||..|+ +||| -.-|+..+.||++..
T Consensus 202 ~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lp-vi~Vv~NN~~gi~~~ 248 (407)
T 1qs0_A 202 DTKIASAWIGDGATAESDFHTALTFAHVYRAP-VILNVVNNQWAISTF 248 (407)
T ss_dssp CCCCEEEEEETGGGGSHHHHHHHHHHHHHTCC-EEEEEEECSEETTEE
T ss_pred CCCEEEEEECCchhhcChHHHHHHHHHHHCcC-EEEEEECCCcceeec
Confidence 577888888876532 35689999887 8999 555666678888753
Done!