RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1816
         (122 letters)



>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 137

 Score =  100 bits (250), Expect = 4e-29
 Identities = 48/62 (77%), Positives = 56/62 (90%)

Query: 1   MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFT 60
           MRGA+GKPQGTVARV+IGQ IMS+R+  + K  VIEALRRAKFKFPGRQKI++SKKWGFT
Sbjct: 76  MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFT 135

Query: 61  KY 62
           K+
Sbjct: 136 KF 137


>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 163

 Score = 73.7 bits (181), Expect = 2e-18
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 1   MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51
           MR A+GK  GT ARV  G+ + +   + +    V EA RRA  K     +I
Sbjct: 113 MRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163


>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 167

 Score = 69.8 bits (171), Expect = 7e-17
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1   MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 55
           MR  +GKP GT ARV+    I     +    P V EA RRAK K      I  S 
Sbjct: 111 MRAPFGKPVGTAARVHGANHIFIAWVNP--DPNVEEAWRRAKMKVTPTINIDSSP 163


>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
           [TaxId: 562]}
          Length = 131

 Score = 32.5 bits (74), Expect = 0.005
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 1   MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 55
           M    G  +  VA +  G+ +  +      +    EA + A  K P +    V+K
Sbjct: 80  MGKGKGNVEYWVALIQPGKVLYEM--DGVPEELAREAFKLAAAKLPIKTTF-VTK 131


>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779
           {Pseudomonas fluorescens [TaxId: 294]}
          Length = 59

 Score = 26.9 bits (60), Expect = 0.17
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 72  DQNRTSIISTPKSVFFPIFQGSPTLSEEEIIESSNNETNDE 112
             ++T +IS    + +PI  G P + E E    +  E  D+
Sbjct: 19  SADKTELISKGAGLAYPIRDGIPVMLESEARTLTTEERLDK 59


>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
           thermophilus [TaxId: 274]}
          Length = 136

 Score = 27.9 bits (62), Expect = 0.21
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 1   MRGAYGK--PQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKI 51
           +R   GK   +G VA V  G+ +  V    + +   +EALR A  K P + KI
Sbjct: 76  VRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQ--AMEALRIAGHKLPIKTKI 126


>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 59

 Score = 25.7 bits (57), Expect = 0.47
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 72  DQNRTSIISTPKSVFFPIFQGSPTLSEEEIIESSNNE 108
           D+++  +I     + FPI  G P + E E  E +  E
Sbjct: 20  DKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEE 56


>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 130

 Score = 24.9 bits (54), Expect = 2.4
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 1/66 (1%)

Query: 21  IMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKY-DREEYETLRDQNRTSII 79
           I      +  K  ++    +          +    K G   Y    E   + +    +I+
Sbjct: 45  IRDYEYIEDNKQGILRIFLKYGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAIL 104

Query: 80  STPKSV 85
           ST + V
Sbjct: 105 STSQGV 110


>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
           phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 415

 Score = 24.3 bits (52), Expect = 5.2
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 3/53 (5%)

Query: 59  FTKYDREEYETLRDQNRTSIISTPKSVFFPI---FQGSPTLSEEEIIESSNNE 108
               D  E++  R     +I++T     F     F           IE SN  
Sbjct: 213 LLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEFNAKANDVNSNGIEWSNEN 265


>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 183

 Score = 23.6 bits (50), Expect = 8.3
 Identities = 5/29 (17%), Positives = 8/29 (27%)

Query: 34  VIEALRRAKFKFPGRQKIYVSKKWGFTKY 62
            +E  +      P    +   K  G   Y
Sbjct: 150 YVETEKDKPLITPENWTLLKEKTTGIVSY 178


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,737
Number of extensions: 18702
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 14
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (21.9 bits)