BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18160
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/159 (65%), Positives = 121/159 (76%), Gaps = 22/159 (13%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITNQ+TF RAK+W
Sbjct: 43 AAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTW 102
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
VKE LQR A P+IVIALAGNKADL ++R VEY E +AYA
Sbjct: 103 VKE---------------------LQRQASPSIVIALAGNKADL-ANKRMVEYEEAQAYA 140
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG 234
++N LLFMETSAKTAMNVN++F+ IAKKLPK E N G
Sbjct: 141 DDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGG 179
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 40/42 (95%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
+ +KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 43
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/149 (69%), Positives = 115/149 (77%), Gaps = 22/149 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN DTF RAK+W
Sbjct: 40 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
VKELQ R A PNIVIALAGNKADL S+R VE+ E +AYA
Sbjct: 100 VKELQ---------------------RQASPNIVIALAGNKADLA-SKRAVEFQEAQAYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
++N LLFMETSAKTAMNVNEIF+ IAKKL
Sbjct: 138 DDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTI
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 38
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/149 (69%), Positives = 115/149 (77%), Gaps = 22/149 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN DTF RAK+W
Sbjct: 38 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 97
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
VKELQ R A PNIVIALAGNKADL S+R VE+ E +AYA
Sbjct: 98 VKELQ---------------------RQASPNIVIALAGNKADLA-SKRAVEFQEAQAYA 135
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKL 224
++N LLFMETSAKTAMNVNEIF+ IAKKL
Sbjct: 136 DDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 38
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 115/150 (76%), Gaps = 22/150 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQTVCLDD T++FEIWDTAG ERYH+LAPMYYR AQAAI+VYDITN DTF RAK+W
Sbjct: 40 AAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
VKELQ R A PNIVIALAGNKADL S+R VE+ E +AYA
Sbjct: 100 VKELQ---------------------RQASPNIVIALAGNKADLA-SKRAVEFQEAQAYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
++N LLFMETSAKTAMNVNEIF+ IAKKLP
Sbjct: 138 DDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 40
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKELQ R A PNIVIAL+GNKADL ++R V++
Sbjct: 94 FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 35 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 94
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKELQ R A PNIVIAL+GNKADL ++R V++
Sbjct: 95 FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 132
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 133 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 42
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKELQ R A PNIVIAL+GNKADL ++R V++
Sbjct: 94 FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKELQ R A PNIVIAL+GNKADL ++R V++
Sbjct: 94 FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKELQ R A PNIVIAL+GNKADL ++R V++
Sbjct: 94 FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKELQ R A PNIVIAL+GNKADL ++R V++
Sbjct: 94 FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 119/158 (75%), Gaps = 22/158 (13%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 34 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKELQ R A PNIVIAL+GNKADL ++R V++
Sbjct: 94 FARAKNWVKELQ---------------------RQASPNIVIALSGNKADL-ANKRAVDF 131
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 132 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGA 41
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/151 (64%), Positives = 117/151 (77%), Gaps = 22/151 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQTVCLDD T++FEIWDTAG ERYH+LAPMYYR AQAAI+VYDITN+++F RAK+W
Sbjct: 40 AAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
VKELQ R A PNIVIAL+GNKADL ++R V++ E ++YA
Sbjct: 100 VKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 138 DDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 2 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 40
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 197 bits (501), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 115/158 (72%), Gaps = 22/158 (13%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAP YYR AQAAI+VYDITN+++
Sbjct: 35 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEES 94
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKELQ R A PNIVIAL+GNKADL ++R V++
Sbjct: 95 FARAKNWVKELQ---------------------RQASPNIVIALSGNKADLA-NKRAVDF 132
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E ++YA++N LLF ETSAKT+ NVNEIF IAKKLPK
Sbjct: 133 QEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 42
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 67 VVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ 126
V F AAF +QT+ ++D T++FEIWDTAGQERYH+LAPMYYR A AAIIV+D+TNQ
Sbjct: 38 VEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ 97
Query: 127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186
+F RAK WV+ELQ A N PN+V+ALAGNK+DL +R+ V
Sbjct: 98 ASFERAKKWVQELQ--AQGN-------------------PNMVMALAGNKSDLLDARK-V 135
Query: 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
+ + YA+ENGL FMETSAKTA NV EIF EIA++LP+
Sbjct: 136 TAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 29/39 (74%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
K KLVLLG+ GKSSLVLRFV+ QF E+QESTIG
Sbjct: 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 47
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 96/154 (62%), Gaps = 23/154 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQ V +++ T++FEIWDTAGQER+ +LAP YYRNAQAA++VYD+T +F +A+ W
Sbjct: 38 AAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHW 97
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL--PTSRRCVEYSEGEA 193
VKEL A +I+IAL GNK D R V EGE
Sbjct: 98 ---------------------VKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEK 136
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
AEE GLLF ETSAKT NVN++F+ I +K+P K
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS------SHSISFSM 344
+ KLVLLGE+AVGKSS+VLRFV F E +E TIG + H++ F +
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEI 56
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 22/150 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A+F+T+TV + +F IWDTAGQER+ LAPMYYR + AAIIVYDIT ++TF K+W
Sbjct: 40 ASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
V+ EL++ PP+IV+A+AGNK DL R +E + + YA
Sbjct: 100 VR---------------------ELRQHGPPSIVVAIAGNKCDLTDVREVME-RDAKDYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
+ +F+ETSAK A+N+NE+F+EI++++P
Sbjct: 138 DSIHAIFVETSAKNAININELFIEISRRIP 167
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
+ K+ LLG++ VGKSS+V RFV F TIG
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGA 40
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 22/150 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A+F+T+TV + +F IWDTAG ER+ LAPMYYR + AAIIVYDIT ++TF K+W
Sbjct: 41 ASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 100
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
V+ EL++ PP+IV+A+AGNK DL R +E + + YA
Sbjct: 101 VR---------------------ELRQHGPPSIVVAIAGNKCDLTDVREVME-RDAKDYA 138
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
+ +F+ETSAK A+N+NE+F+EI++++P
Sbjct: 139 DSIHAIFVETSAKNAININELFIEISRRIP 168
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
+ K+ LLG++ VGKSS++ RFV F TIG
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA 41
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 22/152 (14%)
Query: 74 FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
A+F+T+TV + +F IWDTAGQER+H+LAPMYYR + AA+IVYDIT QD+F K
Sbjct: 56 IGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK 115
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
WV KEL+ P NIV+A+AGNK DL R V + +
Sbjct: 116 KWV---------------------KELKEHGPENIVMAIAGNKCDLSDIRE-VPLKDAKE 153
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
YAE G + +ETSAK A+N+ E+F I++++P
Sbjct: 154 YAESIGAIVVETSAKNAINIEELFQGISRQIP 185
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLN 351
+ I + K+ LLG++ VGKSS+V RFV+ F TIG + ++P N L+
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK-----TVPCGNELH 72
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 90/150 (60%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + V +D I+ +IWDTAGQE + ++ YYR A A++VYDIT ++T
Sbjct: 58 FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET--------- 108
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
F SW+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 109 ------------FNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-SRRDVKREEGEAFARE 155
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+GL+FMETSAKTA NV E F+ AK++ +K
Sbjct: 156 HGLIFMETSAKTACNVEEAFINTAKEIYRK 185
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 57
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 47 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 96
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 97 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+GL+FMETSAKTA NV E F+ AK++ +K
Sbjct: 145 HGLIFMETSAKTASNVEEAFINTAKEIYEK 174
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 46
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 85/154 (55%), Gaps = 22/154 (14%)
Query: 71 PYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG 130
P+ F T+ + + I+ +IWDTAGQER+ + YYR A A++VYDIT + T
Sbjct: 45 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST-- 102
Query: 131 RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+ SW+ + + + PN VI L GNKADL ++R V Y E
Sbjct: 103 -------------------YNHLSSWLTDARNLTNPNTVIILIGNKADLE-AQRDVTYEE 142
Query: 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
+ +AEENGLLF+E SAKT NV + F+E AKK+
Sbjct: 143 AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 36 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 95
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK DL T+++ V+Y+ + +A+
Sbjct: 96 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 133
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 134 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 163
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 33
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 53 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 112
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK DL T+++ V+Y+ + +A+
Sbjct: 113 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 150
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 180
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 50
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 53 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 112
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK DL T+++ V+Y+ + +A+
Sbjct: 113 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 150
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 180
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGK+ L+LRF + E STIG
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIG 50
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 43 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK DL T+++ V+Y+ + +A+
Sbjct: 103 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 141 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 170
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 40
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 62 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 121
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK DL T+++ V+Y+ + +A+
Sbjct: 122 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 159
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 160 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 189
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 59
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 43 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK DL T+++ V+Y+ + +A+
Sbjct: 103 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 141 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 170
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 40
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ L++ T++ +IWDTAGQER+ T+ YYR A IIVYD+T++D+F K W++
Sbjct: 46 FKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQ 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK DL S+R V EG A+
Sbjct: 106 EIDRYAMENVNKL---------------------LVGNKCDL-VSKRVVTSDEGRELADS 143
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+G+ F+ETSAK A NV + F +A ++ K+
Sbjct: 144 HGIKFIETSAKNAYNVEQAFHTMAGEIKKR 173
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + + STIG
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIG 43
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 22/148 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+++T+ L+D TIR ++WDTAGQER+ +L P Y R++ AA++VYDIT
Sbjct: 43 FLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIT------------- 89
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
N+++F + W+ +++ +++I L GNK DL +R V EGE A+E
Sbjct: 90 --------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLP 225
++F+ETSAK NV ++F +A LP
Sbjct: 141 LNVMFIETSAKAGYNVKQLFRRVAAALP 168
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ ++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 40
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 84/154 (54%), Gaps = 22/154 (14%)
Query: 71 PYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG 130
P+ F T+ + + I+ +IWDTAGQ R+ + YYR A A++VYDIT + T
Sbjct: 60 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRST-- 117
Query: 131 RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+ SW+ + + + PN VI L GNKADL ++R V Y E
Sbjct: 118 -------------------YNHLSSWLTDARNLTNPNTVIILIGNKADLE-AQRDVTYEE 157
Query: 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
+ +AEENGLLF+E SAKT NV + F+E AKK+
Sbjct: 158 AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 70 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 129
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK DL T+++ V+Y+ + +A+
Sbjct: 130 EIDRYASENVNKL---------------------LVGNKCDL-TTKKVVDYTTAKEFADS 167
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F A ++ K+
Sbjct: 168 LGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 67
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 22/151 (14%)
Query: 74 FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
A+F+T+ + + + IWDTAGQER+H L P+YYR++ AI+VYDIT++D+F + K
Sbjct: 39 LGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 98
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
+W VKEL++M I + + GNK DL R V E E+
Sbjct: 99 NW---------------------VKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAES 136
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
YAE G TSAK + E+F+++ K++
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K+VLLGE VGK+SLVLR+ +F++ +T+G
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 40
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 22/151 (14%)
Query: 74 FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
A+F+T+ + + + IWDTAGQER+H L P+YYR++ AI+VYDIT++D+F + K
Sbjct: 39 LQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 98
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
+W VKEL++M I + + GNK DL R V E E+
Sbjct: 99 NW---------------------VKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAES 136
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
YAE G TSAK + E+F+++ K++
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+K+VLLGE VGK+SLVLR+ +F++ +T+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL 39
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 22/151 (14%)
Query: 74 FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
A+F+T+ + + + IWDTAGQER+H L P+YYR++ AI+VYDIT++D+F + K
Sbjct: 53 LQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 112
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
+W VKEL++M I + + GNK DL R V E E+
Sbjct: 113 NW---------------------VKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAES 150
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
YAE G TSAK + E+F+++ K++
Sbjct: 151 YAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+K+VLLGE VGK+SLVLR+ +F++ +T+
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL 53
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q+++ K W++
Sbjct: 46 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQ 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK+DL T+++ V+ + + +A+
Sbjct: 106 EIDRYASENVNKL---------------------LVGNKSDL-TTKKVVDNTTAKEFADS 143
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 144 LGIPFLETSAKNATNVEQAFMTMAAEIKKR 173
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 43
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q+++ K W++
Sbjct: 46 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQ 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK+DL T+++ V+ + + +A+
Sbjct: 106 EIDRYASENVNKL---------------------LVGNKSDL-TTKKVVDNTTAKEFADS 143
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 144 LGIPFLETSAKNATNVEQAFMTMAAEIKKR 173
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 43
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 27/188 (14%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y F+++T+ L+D TIR ++WDTAG ER+ +L P Y R++ AA++VYDIT
Sbjct: 42 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDIT----- 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
N+++F + W+ +++ +++I L GNK DL +R V
Sbjct: 97 ----------------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIE 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETA-----EA 244
EGE A+E ++F+ETSAK NV ++F +A LP E + +++ E
Sbjct: 140 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQ 199
Query: 245 PKTSNCCN 252
P + C+
Sbjct: 200 PVSEGGCS 207
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 47
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 45 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L G K DL T+++ V+Y+ + +A+
Sbjct: 105 EIDRYASENVNKL---------------------LVGIKCDL-TTKKVVDYTTAKEFADS 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 143 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 172
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 42
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 22/148 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+++T+ L+D T+R ++WDTAGQER+ +L P Y R++ A++VYDITN ++F + W+
Sbjct: 51 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWID 110
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+++ +R +++I L GNK DL + +R V EGE A+E
Sbjct: 111 DVR-------------------TER--GSDVIIMLVGNKTDL-SDKRQVSTEEGERKAKE 148
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLP 225
++F+ETSAK NV ++F +A LP
Sbjct: 149 LNVMFIETSAKAGYNVKQLFRRVAAALP 176
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ ++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 48
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 22/147 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+++T+ L+D T+R ++WDTAGQER+ +L P Y R++ A++VYDIT
Sbjct: 39 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT------------- 85
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
N+++F + W+ +++ +++I L GNK DL +R + EGE A+E
Sbjct: 86 --------NLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQITIEEGEQRAKE 136
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
++F+ETSAKT NV ++F +A L
Sbjct: 137 LSVMFIETSAKTGYNVKQLFRRVASAL 163
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 36
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 25/141 (17%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F+IWDTAGQERY ++ P+YYR A AI+V+DI+N +T RAK+WV +L+
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--------- 143
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
N +I L NK D ++ V+ E + YA++N LLF++TSAKT
Sbjct: 144 --------------ISSNYIIILVANKID--KNKFQVDILEVQKYAQDNNLLFIQTSAKT 187
Query: 210 AMNVNEIFVEIAKKLPKKEVN 230
N+ IF +A+++ K +N
Sbjct: 188 GTNIKNIFYMLAEEIYKNIIN 208
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
K YK VLLGES+VGKSS+VLR + FHE +TIG
Sbjct: 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA 42
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 22/151 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+++T+ L+D T+R ++WDTAG ER+ +L P Y R++ A++VYDIT
Sbjct: 43 FLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDIT------------- 89
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
N+++F + W+ +++ +++I L GNK DL +R V EGE A+E
Sbjct: 90 --------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
++F+ETSAK NV ++F +A LP E
Sbjct: 141 LNVMFIETSAKAGYNVKQLFRRVAAALPGME 171
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ ++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 40
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 27/187 (14%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y F+++T+ L+D T+R ++WDTAG ER+ +L P Y R++ A++VYDIT
Sbjct: 45 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDIT----- 99
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
N+++F + W+ +++ +++I L GNK DL +R V
Sbjct: 100 ----------------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIE 142
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETA-----EA 244
EGE A+E ++F+ETSAK NV ++F +A LP E + +++ E
Sbjct: 143 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQ 202
Query: 245 PKTSNCC 251
P + C
Sbjct: 203 PVSEGGC 209
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 50
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 22/147 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+++T+ L+D T+R ++WDTAGQER+ +L P Y R++ A++VYDIT
Sbjct: 38 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT------------- 84
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
N+++F + W+ +++ +++I L GNK DL +R V EGE A+E
Sbjct: 85 --------NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKE 135
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
++F+ETSAK NV ++F +A L
Sbjct: 136 LNVMFIETSAKAGYNVKQLFRRVAAAL 162
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 35
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 22/152 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D V ++ ++WDTAGQER+ ++ YYR+A A +++YD+TN+ +F
Sbjct: 48 FRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF-------- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
NI ++W+ E+ A ++ + L GNK D R V+ +GE A+E
Sbjct: 100 -------DNI------QAWLTEIHEYAQHDVALMLLGNKVD-SAHERVVKREDGEKLAKE 145
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229
GL FMETSAKT +NV+ F IAK+L ++ +
Sbjct: 146 YGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQF 322
+K++L+G+S VGK+ L++RF G F
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAF 35
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 22/157 (14%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y F +TV LD T++ +IWDTAGQER+ T+ YYR + IIVYD+T+Q++F
Sbjct: 37 YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
K W++E+ R A ++ L GNK DL +R VEY
Sbjct: 97 NGVK---------------------MWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYD 134
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
+ +A+ N + F+ETSA + NV + F+ +A+++ +
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 42
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 22/157 (14%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y F +TV LD T++ +IWDTAGQER+ T+ YYR + IIVYD+T+Q++F
Sbjct: 37 YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
K W++E+ R A ++ L GNK DL +R VEY
Sbjct: 97 NGVK---------------------MWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYD 134
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
+ +A+ N + F+ETSA + NV + F+ +A+++ +
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 42
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 22/149 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV LD T++ +IWDTAGQER+ T+ YYR + IIVYD+T+Q++F K
Sbjct: 58 FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK---- 113
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
W++E+ R A ++ L GNK DL +R VEY + +A+
Sbjct: 114 -----------------MWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADA 155
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
N + F+ETSA + NV + F+ +A+++ +
Sbjct: 156 NKMPFLETSALDSTNVEDAFLTMARQIKE 184
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 55
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 22/147 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+++T+ LD+ +R ++WDTAGQER+ +L P Y R++ AAI+VYDITN+ +F W++
Sbjct: 38 FLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQ 97
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ ++ G+ +++IAL GNK DL R+ V Y EG A+E
Sbjct: 98 DI-------LNERGK--------------DVIIALVGNKTDLGDLRK-VTYEEGXQKAQE 135
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
F ETSAK N+ +F + A KL
Sbjct: 136 YNTXFHETSAKAGHNIKVLFKKTASKL 162
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+YKLV LGE AVGK+S++ RF F +STIG
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIG 35
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 23/156 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F ++ V + T++ +IWDTAGQER+ ++ YYR A A++VYDIT+++T+ +W
Sbjct: 62 FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW-- 119
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ + + +A PNIV+ L GNK DL R V + E +A+E
Sbjct: 120 -------------------LTDARTLASPNIVVILCGNKKDLDPERE-VTFLEASRFAQE 159
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
N L+F+ETSA T NV E F++ A+ + K +++G+
Sbjct: 160 NELMFLETSALTGENVEEAFLKCARTILNK-IDSGE 194
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
+K +++G + GKS L+ +F+ +F + TIG E S
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGS 64
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 31/169 (18%)
Query: 67 VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
V F F+ +FIT +TV ++ ++ +IWDTAGQER+ T+ YYR A I
Sbjct: 21 VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
+VYDIT++ TF K W K + A E Q + L GNK+D
Sbjct: 81 LVYDITDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 119
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+ T R V +GEA A+E G+ F+E+SAK NVNEIF +AK + +K
Sbjct: 120 MET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 37
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 31/169 (18%)
Query: 67 VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
V F F+ +FIT +TV ++ ++ ++WDTAGQER+ T+ YYR A I
Sbjct: 38 VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
+VYD+T++ TF K W K + A E Q + L GNK+D
Sbjct: 98 LVYDVTDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 136
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+ T R V +GEA A+E G+ F+E+SAK NVNEIF +AK + +K
Sbjct: 137 MET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 54
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 22/138 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++ +IWDTAGQER+ ++ YYR A A++VYDIT+++T+ +W+ + RM
Sbjct: 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD-ARM------- 110
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
+A NIVI L GNK DL R V + E +A+EN L+F+ETSA T
Sbjct: 111 -------------LASQNIVIILCGNKKDLDADRE-VTFLEASRFAQENELMFLETSALT 156
Query: 210 AMNVNEIFVEIAKKLPKK 227
NV E FV+ A+K+ K
Sbjct: 157 GENVEEAFVQCARKILNK 174
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
+K +++G + GKS L+ +F+ +F + TIG E S
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS 49
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 31/180 (17%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAGQERY + YYR A A++VYDI T+ + W
Sbjct: 42 FATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW-- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 100 -------------------LKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEK 139
Query: 198 NGLLFMETSAKTAMNVNEIFVEI---------AKKLPKKEVNNGQGGRRLVETAEAPKTS 248
N L F+ETSA + NV E F I K++ + ++ G +V+ + P T
Sbjct: 140 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD 199
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF R +F+ +STIG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 41
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 88/169 (52%), Gaps = 31/169 (18%)
Query: 67 VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
V F F+ +FIT +TV ++ ++ +IWDTAGQER+ T+ YYR A I
Sbjct: 21 VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGII 80
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
+VYDIT++ TF K W K + A E Q + L GNK+D
Sbjct: 81 LVYDITDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 119
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
T R V +GEA A+E G+ F+E+SAK NVNEIF +AK + +K
Sbjct: 120 XET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 37
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAGQERY + YYR A A++VYDI T+ + W
Sbjct: 57 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 114
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 115 -------------------LKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEK 154
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
NGL F+ETSA + NV F I ++ +
Sbjct: 155 NGLSFIETSALDSTNVEAAFQTILTEIYR 183
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF R +F+ +STIG E
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 56
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 31/169 (18%)
Query: 67 VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
V F F+ +FIT +TV ++ ++ ++WDTAGQER+ T+ YYR A I
Sbjct: 25 VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 84
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
+VYD+T++ TF K W K + A E Q + L GNK+D
Sbjct: 85 LVYDVTDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 123
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+ T R V +GEA A+E G+ F+E+SAK NVNEIF +AK + +K
Sbjct: 124 MET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 170
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 41
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 76/143 (53%), Gaps = 22/143 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAGQERY + YYR A A++VYDI T+ + W
Sbjct: 66 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 123
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 124 -------------------LKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEK 163
Query: 198 NGLLFMETSAKTAMNVNEIFVEI 220
NGL F+ETSA + NV F I
Sbjct: 164 NGLSFIETSALDSTNVEAAFQTI 186
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF R +F+ +STIG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 65
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 22/138 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++ +IWDTAGQER+ ++ YYR A A++VYDIT+++T+ +W+ + RM
Sbjct: 60 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD-ARM------- 111
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
+A NIVI L GNK DL R V + E +A+EN L+F+ETSA T
Sbjct: 112 -------------LASQNIVIILCGNKKDLDADRE-VTFLEASRFAQENELMFLETSALT 157
Query: 210 AMNVNEIFVEIAKKLPKK 227
+V E FV+ A+K+ K
Sbjct: 158 GEDVEEAFVQCARKILNK 175
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
+K +++G + GKS L+ +F+ +F + TIG E S
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS 50
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 31/169 (18%)
Query: 67 VVFYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
V F F+ +FIT +TV ++ ++ ++WDTAGQER+ T+ YYR A I
Sbjct: 21 VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGII 80
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
+VYD+T++ TF K W K + A E Q + L GNK+D
Sbjct: 81 LVYDVTDERTFTNIKQWFKTVNEHAND-------------EAQLL--------LVGNKSD 119
Query: 179 LPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
T R V +GEA A+E G+ F+E+SAK NVNEIF +AK + +K
Sbjct: 120 XET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 37
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 74/140 (52%), Gaps = 22/140 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAG ERY + YYR A A++VYDI T+ + W
Sbjct: 42 FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 100 -------------------LKELRDHADSNIVIXLVGNKSDLR-HLRAVPTDEARAFAEK 139
Query: 198 NGLLFMETSAKTAMNVNEIF 217
NGL F+ETSA + NV F
Sbjct: 140 NGLSFIETSALDSTNVEAAF 159
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF R +F+ +STIG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 41
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 74/140 (52%), Gaps = 22/140 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAG ERY + YYR A A++VYDI T+ + W
Sbjct: 48 FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 106 -------------------LKELRDHADSNIVIXLVGNKSDLR-HLRAVPTDEARAFAEK 145
Query: 198 NGLLFMETSAKTAMNVNEIF 217
NGL F+ETSA + NV F
Sbjct: 146 NGLSFIETSALDSTNVEAAF 165
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF R +F+ +STIG E
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 47
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 78/149 (52%), Gaps = 22/149 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAG ERY + YYR A A++VYDI T+ + W
Sbjct: 45 FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 103 -------------------LKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEK 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
NGL F+ETSA + NV F I ++ +
Sbjct: 143 NGLSFIETSALDSTNVEAAFQTILTEIYR 171
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF R +F+ +STIG E
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 44
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 22/143 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAG ERY + YYR A A++VYDI T+ + W
Sbjct: 66 FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW-- 123
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 124 -------------------LKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEK 163
Query: 198 NGLLFMETSAKTAMNVNEIFVEI 220
NGL F+ETSA + NV F I
Sbjct: 164 NGLSFIETSALDSTNVEAAFQTI 186
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF R +F+ +STIG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 65
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 22/138 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++ +IWDTAG ER+ ++ YYR A A++VYDIT+++T+ +W+ + RM
Sbjct: 57 VKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD-ARM------- 108
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
+A NIVI L GNK DL R V + E +A+EN L+F+ETSA T
Sbjct: 109 -------------LASQNIVIILCGNKKDLDADRE-VTFLEASRFAQENELMFLETSALT 154
Query: 210 AMNVNEIFVEIAKKLPKK 227
+V E FV+ A+K+ K
Sbjct: 155 GEDVEEAFVQCARKILNK 172
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
+K +++G + GKS L+ +F+ +F + TIG E S
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS 47
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+TV L ++ +IWDTAG ERY + YYR A A++V+D+T T
Sbjct: 47 FSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT--------- 97
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ + W+KEL A IV+ L GNK+DL +R V E +AE
Sbjct: 98 ------------YAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE-VPTEEARMFAEN 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
NGLLF+ETSA + NV F + K++ K
Sbjct: 145 NGLLFLETSALDSTNVELAFETVLKEIFAK 174
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
+K+VL+GES VGK++L+ RF R +F +TIG E +
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFST 49
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+TV L ++ +IWDTAG ERY + YYR A A++V+D+T T
Sbjct: 62 FSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT--------- 112
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ + W+KEL A IV+ L GNK+DL +R V E +AE
Sbjct: 113 ------------YAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE-VPTEEARMFAEN 159
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
NGLLF+ETSA + NV F + K++ K
Sbjct: 160 NGLLFLETSALDSTNVELAFETVLKEIFAK 189
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQS 336
+K+VL+GES VGK++L+ RF R +F +TIG E +
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFST 64
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 25/159 (15%)
Query: 69 FYPYL---FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F P L F +T+ +D + IWDTAGQER+ TL P YYR AQ I+VYD+T
Sbjct: 40 FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR 99
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
+DTF + +W+ EL+ N +IV L GNK D R
Sbjct: 100 RDTFVKLDNWLNELETYCTRN--------------------DIVNXLVGNKID--KENRE 137
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
V+ +EG +A ++ LF+E SAKT V F E+ +K+
Sbjct: 138 VDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ K++++GES VGKSSL+LRF F +TIG
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG 49
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD I+ +IWDTAGQER+ T+ YYR A ++VYDITN+ +F ++W++
Sbjct: 43 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIR 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ A +++ + GNK D+ +R V GE A +
Sbjct: 103 NIEEHASADVEKM---------------------ILGNKCDV-NDKRQVSKERGEKLALD 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ FMETSAK +NV F +A+ + K
Sbjct: 141 YGIKFMETSAKANINVENAFFTLARDIKAK 170
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGK+ ++ RF F+ STIG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 40
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD I+ +IWDTAGQER+ T+ YYR A ++VYDITN+ +F ++W++
Sbjct: 45 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIR 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ A +++ + GNK D+ +R V GE A +
Sbjct: 105 NIEEHASADVEKM---------------------ILGNKCDV-NDKRQVSKERGEKLALD 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ FMETSAK +NV F +A+ + K
Sbjct: 143 YGIKFMETSAKANINVENAFFTLARDIKAK 172
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGK+ ++ RF F+ STIG
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 42
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+T+ ++ I+ +IWDTAGQERY + YYR A A+IVYDI+ ++ W
Sbjct: 50 FATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW-- 107
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ EL+ A N+ + L GNK+DL R V E + +A+E
Sbjct: 108 -------------------LSELRENADDNVAVGLIGNKSDL-AHLRAVPTEESKTFAQE 147
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
N LLF ETSA + NV++ F E+ + +K
Sbjct: 148 NQLLFTETSALNSENVDKAFEELINTIYQK 177
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF + +F+ +STIG E
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE 49
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 23/151 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV L IR +IWDTAGQER++++ YYR+A+ I+VYDIT ++TF W+K
Sbjct: 63 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 122
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ + A + + + L GNK D T R + +GE +A++
Sbjct: 123 MIDKYASEDAE---------------------LLLVGNKLDCETDRE-ITRQQGEKFAQQ 160
Query: 198 -NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F E SAK NV+EIF+++ + KK
Sbjct: 161 ITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ +++++G VGK+SL+ RF F E +ST+G
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG 60
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 22/147 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ +TV ++ ++ +IWDTAGQER+ ++ YYR+A A I+ YDIT +++F
Sbjct: 63 FMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-------- 114
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
R P W++E+++ A ++ L GNK DL RR V E ++E
Sbjct: 115 ---RCLP----------EWLREIEQYASNKVITVLVGNKIDL-AERREVSQQRAEEFSEA 160
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
+ ++ETSAK + NV ++F+++A +L
Sbjct: 161 QDMYYLETSAKESDNVEKLFLDLACRL 187
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K+VL+G + VGK+ LV RF +G F Q +TIG
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 60
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y A F+T+ V +DD + +IWDTAGQER+ +L +YR A ++V+D+T +TF
Sbjct: 37 YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
SW E A P P N + GNK DL + + +
Sbjct: 97 KTLDSWRDEFLIQASPR-----------------DPENFPFVVLGNKIDLENRQVATKRA 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ Y+ +N + + ETSAK A+NV + F IA+ K+E
Sbjct: 140 QAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
T K K+++LG+S VGK+SL+ ++V +F ++TIG +
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD 44
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 23/148 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ + ++ +IWDTAGQER+ T+ YYR+A AI+ YDIT + +F
Sbjct: 66 FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSF-------- 117
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ P+ W++++++ A NIV L GNK+DL + R V +E ++ AE
Sbjct: 118 ----LSVPH---------WIEDVRKYAGSNIVQLLIGNKSDL-SELREVSLAEAQSLAEH 163
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
+L +ETSAK + NV E F+ +A +L
Sbjct: 164 YDILCAIETSAKDSSNVEEAFLRVATEL 191
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPT 346
+KLVL+G+++VGK+ +V RF G F E Q STIG + F+M T
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG--------VDFTMKT 70
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y A F+T+ V +DD + +IWDTAGQER+ +L +YR A ++V+D+T +TF
Sbjct: 37 YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
SW E A P P N + GNK DL + + +
Sbjct: 97 KTLDSWRDEFLIQASPR-----------------DPENFPFVVLGNKIDLENRQVATKRA 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ Y+ +N + + ETSAK A+NV + F IA+ K+E
Sbjct: 140 QAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
T K K+++LG+S VGK+SL+ ++V +F ++TIG +
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD 44
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 23/144 (15%)
Query: 78 FITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
F T+++ L ++ I+ +IWDTAGQERY + YYR A A++VYDIT +++F + W
Sbjct: 44 FATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKW- 102
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
+KEL+ A NIVI L GNK+DL R + ++ YA+
Sbjct: 103 --------------------LKELRDNADSNIVILLVGNKSDLK-HLRVINDNDATQYAK 141
Query: 197 ENGLLFMETSAKTAMNVNEIFVEI 220
+ L F+ETSA A NV F ++
Sbjct: 142 KEKLAFIETSALEATNVELAFHQL 165
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF R +F+ +STIG E
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVE 43
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y A F+T+ V +DD + +IWDTAGQER+ +L +YR A ++V+D+T +TF
Sbjct: 37 YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
SW E A P P N + GNK D + + +
Sbjct: 97 KTLDSWRDEFLIQASPR-----------------DPENFPFVVLGNKIDFENRQVATKRA 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ Y+ +N + + ETSAK A+NV + F IA+ K+E
Sbjct: 140 QAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
T K K+++LG+S VGK+SL+ ++V +F ++TIG +
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD 44
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 22/143 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+T+ +++ I+ +IWDTAG ERY + YYR A A+IVYDI+ ++ W
Sbjct: 47 FATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW-- 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ EL+ A N+ + L GNK+DL R V E + +A E
Sbjct: 105 -------------------LTELRENADDNVAVGLIGNKSDLA-HLRAVPTDEAKNFAME 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEI 220
N +LF ETSA + NV++ F E+
Sbjct: 145 NQMLFTETSALNSDNVDKAFREL 167
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K+VL+G+S VGKS+L+ RF +F+ +STIG E
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVE 46
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y A F+T+ V +DD + +IWDTAG ER+ +L +YR A ++V+D+T +TF
Sbjct: 37 YKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTF 96
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
SW E A P P N + GNK DL + + +
Sbjct: 97 KTLDSWRDEFLIQASPR-----------------DPENFPFVVLGNKIDLENRQVATKRA 139
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ Y+ +N + + ETSAK A+NV + F IA+ K+E
Sbjct: 140 QAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
T K K+++LG+S VGK+SL+ ++V +F ++TIG +
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD 44
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV D I+ +IWDTAGQERY T+ YYR A +++YDI NQ++F + W
Sbjct: 59 FKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWAT 118
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ + SW N + L GNK DL R V +G A++
Sbjct: 119 QI------------KTYSW---------DNAQVILVGNKCDLE-DERVVPAEDGRRLADD 156
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G F E SAK +NV ++F + + +K
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDVICEK 186
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
+KL+L+G S+VGK+S + R+ F ST+G I F + T R + + +
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--------IDFKVKTVYRHDKRIKLQ 74
Query: 358 FVW 360
+W
Sbjct: 75 -IW 76
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 31/157 (19%)
Query: 69 FYPYLFSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120
F FS ++IT +TV ++ ++ +IWDTAGQER+ T+ YYR I+V
Sbjct: 29 FADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 88
Query: 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180
YD+T+ ++F K W+ E+ + N D R L GNK D P
Sbjct: 89 YDVTSAESFVNVKRWLHEINQ----NCDDVCR------------------ILVGNKNDDP 126
Query: 181 TSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIF 217
R+ VE + +A + G+ ETSAK +NV E+F
Sbjct: 127 -ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+++G+S VGKSSL+LRF F +TIG
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 43
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ +D I+ +IWDTAGQERY T+ YYR A I++YDITN+++F + W
Sbjct: 42 FKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWST 101
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ + SW N + L GNK D+ R V G A+
Sbjct: 102 QI------------KTYSW---------DNAQVLLVGNKCDME-DERVVSSERGRQLADH 139
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G F E SAK +NV + F + + +K
Sbjct: 140 LGFEFFEASAKDNINVKQTFERLVDVICEK 169
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++++G S+VGK+S + R+ F ST+G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 70 YPYLFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
Y A F+T+ V +D D ++WDTAGQER+ +L +YR A ++VYD+TN +
Sbjct: 37 YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F KSW E A N +P + GNK D S++ V
Sbjct: 97 FENIKSWRDEFLVHANVN-----------------SPETFPFVILGNKIDAEESKKIVSE 139
Query: 189 SEGEAYAEENGL--LFMETSAKTAMNVNEIFVEIAK 222
+ A+ G LF+ TSAK A+NV+ F EIA+
Sbjct: 140 KSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIAR 174
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 27/35 (77%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
K+++LG+S VGK+SL+ R+V ++ + ++TIG +
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGAD 44
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 84.0 bits (206), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 21/104 (20%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W++
Sbjct: 35 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ 94
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181
E+ R A N++ L GNK DL T
Sbjct: 95 EIDRYASENVNKL---------------------LVGNKCDLTT 117
Score = 34.7 bits (78), Expect = 0.083, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 300 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
L+L+G+S VGKS L+LRF + E STIG
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIG 32
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV + ++ +IWDTAGQERY T+ YYR A I++YDITN+++F + W
Sbjct: 60 FKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWAT 119
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ + SW N + L GNK D+ R V +G+ AE+
Sbjct: 120 QI------------KTYSW---------DNAQVILVGNKCDME-EERVVPTEKGQLLAEQ 157
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G F E SAK ++V + F + + K
Sbjct: 158 LGFDFFEASAKENISVRQAFERLVDAICDK 187
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPIT 357
+KL+++G S+VGK+S + R+ F ST+G I F + T R V +
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG--------IDFKVKTVYRHEKRVKLQ 75
Query: 358 FVW 360
+W
Sbjct: 76 -IW 77
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 26/155 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ +D ++WDTAGQER+ ++A Y+R A +++YD+T + +F
Sbjct: 65 FQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF-------- 116
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----RRCVEYSEGE 192
NI + WV ++ A + I L GNKAD+ + ++CV GE
Sbjct: 117 -------LNI------REWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE 163
Query: 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
A G LF ETSAK N+ E + +A+++ K+
Sbjct: 164 KLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQ 335
YK+VL G++AVGKSS ++R + +F E +T+G + Q
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ 66
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 65/140 (46%), Gaps = 22/140 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ +D I+ +IWDTAG ERY T+ YYR A I+ YDITN+++F + W
Sbjct: 45 FKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWST 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ + SW N + L GNK D R V G A+
Sbjct: 105 QI------------KTYSW---------DNAQVLLVGNKCDXE-DERVVSSERGRQLADH 142
Query: 198 NGLLFMETSAKTAMNVNEIF 217
G F E SAK +NV + F
Sbjct: 143 LGFEFFEASAKDNINVKQTF 162
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++++G S+VGK+S + R+ F ST+G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 42
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 28/164 (17%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ ++WDTAG ER+ +L ++R+A ++++D+T+Q +F ++W+ +LQ
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ--------- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
A ++ + P+IV L GNKADLP R E + AE+ G+ + ETSA T
Sbjct: 121 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELAEKYGIPYFETSAAT 168
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNT 253
NV E VE L K + + VE + P T N N+
Sbjct: 169 GQNV-EKSVETLLDLIMKRM------EKCVEKTQVPDTVNGGNS 205
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 45
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 28/160 (17%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ ++WDTAGQER+ +L ++R+A ++++D+T+Q +F ++W+ +LQ
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ--------- 134
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
A ++ + P+IV L GNKADLP R E + A++ G+ + ETSA T
Sbjct: 135 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELADKYGIPYFETSAAT 182
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSN 249
NV E VE L K + + VE + P T N
Sbjct: 183 GQNV-EKAVETLLDLIMKRM------EQCVEKTQIPDTVN 215
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 59
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 23/158 (14%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTF 129
Y F+ + + ++D +R +WDTAGQE + + YYR AQA ++V+ T++++F
Sbjct: 34 YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESF 93
Query: 130 GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189
SW +++ V E+ +I AL NK DL C++
Sbjct: 94 EAISSWREKV-----------------VAEV-----GDIPTALVQNKIDLLDD-SCIKNE 130
Query: 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
E E A+ L F TS K +NV+E+F +A+K +K
Sbjct: 131 EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K+V++G AVGKSS++ R+ +G F + + TIG
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG 39
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 28/158 (17%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ ++WDTAG ER+ +L ++R+A ++++D+T+Q +F ++W+ +LQ
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ--------- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
A ++ + P+IV L GNKADLP R E + AE+ G+ + ETSA T
Sbjct: 121 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELAEKYGIPYFETSAAT 168
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKT 247
NV E VE L K + + VE + P T
Sbjct: 169 GQNV-EKSVETLLDLIMKRM------EKCVEKTQVPDT 199
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 45
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 24/144 (16%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I ++WDTAG ER+ +L ++R+A ++++D+TN+ +F ++W+ +LQ A
Sbjct: 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE--- 126
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
P+IV L GNK+DL +R V+ E AE+ G+ + ETSA
Sbjct: 127 ---------------NPDIV--LCGNKSDLE-DQRAVKEEEARELAEKYGIPYFETSAAN 168
Query: 210 AMNVN---EIFVEIAKKLPKKEVN 230
N++ E+ +++ K ++ V+
Sbjct: 169 GTNISHAIEMLLDLIMKRMERSVD 192
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K + LG+S VGK+S++ ++ G+F+ +T+G
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG 45
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 28/160 (17%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ ++WDTAG ER+ +L ++R+A ++ +D+T+Q +F ++W +LQ
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ--------- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
A ++ + P+IV L GNKADLP R E + AE+ G+ + ETSA T
Sbjct: 121 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELAEKYGIPYFETSAAT 168
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSN 249
NV E VE L K + VE + P T N
Sbjct: 169 GQNV-EKSVETLLDLIXKRX------EKCVEKTQVPDTVN 201
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 45
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 24/147 (16%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ ++WDTAG ER+ +L ++R+A ++ +D+T+Q +F ++W +LQ
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ--------- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
A ++ + P+IV L GNKADLP R E + AE+ G+ + ETSA T
Sbjct: 121 ---ANAYCEN------PDIV--LIGNKADLPDQREVNE-RQARELAEKYGIPYFETSAAT 168
Query: 210 AMNVN---EIFVEIAKKLPKKEVNNGQ 233
NV E +++ K +K V Q
Sbjct: 169 GQNVEKSVETLLDLIXKRXEKCVEKTQ 195
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 45
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 25/151 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
F + V +D I+ ++WDTAGQER+ ++ YYRN A + VYD+TN +F +W+
Sbjct: 57 FRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI 116
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
+E + Q + +I L GNK DL ++ + V + +A+
Sbjct: 117 EECK--------------------QHLLANDIPRILVGNKCDLRSAIQ-VPTDLAQKFAD 155
Query: 197 ENGLLFMETSAKTAMN---VNEIFVEIAKKL 224
+ + ETSAK + V IF+ +A KL
Sbjct: 156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++++G+S VGK+ L RF G+F + E+TIG
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 54
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 21/147 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D EI DTAG E++ ++ +Y +N Q I+VY + NQ +F K
Sbjct: 39 FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK---- 94
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
P D R K + K + + L GNK DL + R SEG A AEE
Sbjct: 95 -------PMRDQIIRVKRYEK---------VPVILVGNKVDLESEREVSS-SEGRALAEE 137
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
G FMETSAK+ V+E+F EI +++
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ + + +D + +IWDTAGQER+ +L +YR + ++ + + + +F +W K
Sbjct: 44 FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 103
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E A VKE P + + GNK D+ S R V E +A+ +
Sbjct: 104 EFIYYAD------------VKE-----PESFPFVILGNKIDI--SERQVSTEEAQAWCRD 144
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKLPKKE 228
NG + ETSAK A NV F E +++ E
Sbjct: 145 NGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
K +K++LLG+ VGKSSL+ R+V +F TIG E
Sbjct: 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 43
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 20/148 (13%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ + + +D + +IWDTAGQER+ +L +YR + ++ + + + +F +W K
Sbjct: 46 FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E A VKE P + + GNK D+ S R V E +A+ +
Sbjct: 106 EFIYYAD------------VKE-----PESFPFVILGNKIDI--SERQVSTEEAQAWCRD 146
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
NG + ETSAK A NV F E +++
Sbjct: 147 NGDYPYFETSAKDATNVAAAFEEAVRRV 174
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
K +K++LLG+ VGKSSL+ R+V +F TIG E
Sbjct: 5 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 45
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 20/153 (13%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
+ V LD ++ +I DTAG E Y + Y+R+ + ++V+ IT ++F + +++
Sbjct: 46 KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 105
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
R+ + I + + GNK+DL RR V E + AEE G+
Sbjct: 106 RV-------------------KAEEDKIPLLVVGNKSDLE-ERRQVPVEEARSKAEEWGV 145
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
++ETSAKT NV+++F ++ +++ K+++ +
Sbjct: 146 QYVETSAKTRANVDKVFFDLMREIRTKKMSENK 178
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
Q+ + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 2 QSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 39
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 20/153 (13%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
+ V LD ++ +I DTAG E Y + Y+R+ + ++V+ IT ++F + +++
Sbjct: 42 KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 101
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
R+ + I + + GNK+DL RR V E + AEE G+
Sbjct: 102 RV-------------------KAEEDKIPLLVVGNKSDLE-ERRQVPVEEARSKAEEWGV 141
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
++ETSAKT NV+++F ++ +++ K+++ +
Sbjct: 142 QYVETSAKTRANVDKVFFDLMREIRTKKMSENK 174
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
+ +K++++G VGKS+L L+F+ +F E E T
Sbjct: 1 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 35
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 21/147 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
T+ +DD R +I DTAGQE + + Y R + ++V+ +T++ +F + +++
Sbjct: 43 TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 102
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
R+ + D F P I+I GNKADL R+ + EG+ A +
Sbjct: 103 LRV--KDRDEF---------------PMILI---GNKADLDHQRQVTQ-EEGQQLARQLK 141
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226
+ +ME SAK MNV++ F E+ + + K
Sbjct: 142 VTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
F + V +D I+ ++WDTAGQER+ ++ YYRN A + VYD TN +F +W+
Sbjct: 66 FRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWI 125
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
+E + Q + +I L GNK DL ++ + V + +A+
Sbjct: 126 EECK--------------------QHLLANDIPRILVGNKCDLRSAIQ-VPTDLAQKFAD 164
Query: 197 ENGLLFMETSAKTAMN---VNEIFVEIAKKL 224
+ ETSAK + V IF +A KL
Sbjct: 165 THSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++++G+S VGK+ L RF G+F + E+TIG
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 63
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 20/148 (13%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ + + +D + +IWDTAGQER+ +L +YR + ++ + + + +F +W K
Sbjct: 48 FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 107
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E A VKE P + + GNK D+ R V E +A+ ++
Sbjct: 108 EFIYYAD------------VKE-----PESFPFVILGNKTDI--KERQVSTEEAQAWCKD 148
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
NG + ETSAK + NV F E +++
Sbjct: 149 NGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+ K +K++LLG+ VGKSSL+ R+V +F TIG E
Sbjct: 5 SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVE 47
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
EI DTAG E++ + +Y +N Q +VY IT Q TF + +++ R+ +
Sbjct: 55 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD----- 109
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTA 210
++ + L GNK DL R V +G+ A + N F+E+SAK+
Sbjct: 110 ---------------DVPMILVGNKCDLE-DERVVGKEQGQNLARQWNNCAFLESSAKSK 153
Query: 211 MNVNEIFVEIAKKLPK 226
+NVNEIF ++ +++ +
Sbjct: 154 INVNEIFYDLVRQINR 169
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 5 EYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI 38
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
EI DTAG E++ + +Y +N Q +VY IT Q TF + +++ R+ +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD----- 107
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTA 210
++ + L GNK DL R V +G+ A + N F+E+SAK+
Sbjct: 108 ---------------DVPMILVGNKCDLE-DERVVGKEQGQNLARQWNNCAFLESSAKSK 151
Query: 211 MNVNEIFVEIAKKLPK 226
+NVNEIF ++ +++ +
Sbjct: 152 INVNEIFYDLVRQINR 167
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE+Y L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N P
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGP 58
Query: 356 ITF-VW 360
I F VW
Sbjct: 59 IKFNVW 64
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
Q+KLVL+G+ GK++ V R + G+F + T+G E H + F N PI
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEV---HPLVFH-------TNRGPI 59
Query: 357 TF-VW 360
F VW
Sbjct: 60 KFNVW 64
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 21/151 (13%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
+ V LD ++ +I DTAGQE Y + Y+R+ + + V+ IT ++F + +++
Sbjct: 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
R VKE N+ L GNK+DL R+ V E + AE+ +
Sbjct: 113 R---------------VKE-----DENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQWNV 151
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
++ETSAKT NV+++F ++ +++ +++ +
Sbjct: 152 NYVETSAKTRANVDKVFFDLMREIRARKMED 182
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 46
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N PI
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGPI 59
Query: 357 TF-VW 360
F VW
Sbjct: 60 KFNVW 64
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 21/151 (13%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
+ V LD ++ +I DTAGQE Y + Y+R+ + + V+ IT ++F + +++
Sbjct: 57 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 116
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
R VKE N+ L GNK+DL +R V E + AE+ +
Sbjct: 117 R---------------VKE-----DENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNV 155
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
++ETSAKT NV+++F ++ +++ +++ +
Sbjct: 156 NYVETSAKTRANVDKVFFDLMREIRARKMED 186
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 50
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 21/151 (13%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
+ V LD ++ +I DTAGQE Y + Y+R+ + + V+ IT ++F + +++
Sbjct: 45 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 104
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
R VKE N+ L GNK+DL +R V E + AE+ +
Sbjct: 105 R---------------VKE-----DENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNV 143
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
++ETSAKT NV+++F ++ +++ +++ +
Sbjct: 144 NYVETSAKTRANVDKVFFDLMREIRARKMED 174
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 1 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 38
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F++WDTAG E++ L YY NAQ AII++D+T++ T+ +W ++L R+
Sbjct: 53 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC------ 106
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 107 ----------------ENIPIVLCGNKVDV--KERKVK-AKTITFHRKKNLQYYDISAKS 147
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 148 NYNFEKPFLWLARKL 162
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISF 342
++ +KLVL+G+ GK++ V R + G+F + +TIG E H +SF
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV---HPLSF 46
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F++WDTAG E++ L YY NAQ AII++D+T++ T+ +W ++L R+
Sbjct: 54 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC------ 107
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 108 ----------------ENIPIVLCGNKVDV--KERKVK-AKTITFHRKKNLQYYDISAKS 148
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 149 NYNFEKPFLWLARKL 163
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISF 342
++ +KLVL+G+ GK++ V R + G+F + +TIG E H +SF
Sbjct: 1 GEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV---HPLSF 47
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 52 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 105
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 106 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 146
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 147 NYNFEKPFLWLARKL 161
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N P
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGP 51
Query: 356 ITF-VW 360
I F VW
Sbjct: 52 IKFNVW 57
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N PI
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGPI 59
Query: 357 TF-VW 360
F VW
Sbjct: 60 KFNVW 64
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+F + T+G E H + F N P
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEV---HPLVFH-------TNRGP 58
Query: 356 ITF-VW 360
I F VW
Sbjct: 59 IKFNVW 64
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N P
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGP 58
Query: 356 ITF-VW 360
I F VW
Sbjct: 59 IKFNVW 64
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 118 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 158
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 159 NYNFEKPFLWLARKL 173
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N P
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGP 63
Query: 356 ITF-VW 360
I F VW
Sbjct: 64 IKFNVW 69
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N P
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGP 58
Query: 356 ITF-VW 360
I F VW
Sbjct: 59 IKFNVW 64
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 118 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 158
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 159 NYNFEKPFLWLARKL 173
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+ + +T+G E H + F N P
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEV---HPLVFH-------TNRGP 63
Query: 356 ITF-VW 360
I F VW
Sbjct: 64 IKFNVW 69
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F++WDTAG E++ L YY NAQ AII++D+T++ T+ +W ++L R+
Sbjct: 61 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC------ 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 115 ----------------ENIPIVLCGNKVDV--KERKVK-AKTITFHRKKNLQYYDISAKS 155
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 156 NYNFEKPFLWLARKL 170
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISF 342
++ +KLVL+G+ GK++ V R + G+F + +TIG E H +SF
Sbjct: 7 NGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV---HPLSF 54
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
++ + L GNK+DLP+ R V+ + + A G+ F
Sbjct: 105 KDSE--------------------DVPMVLVGNKSDLPS--RTVDTKQAQDLARSYGIPF 142
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
+ETSAKT V++ F + +++ K
Sbjct: 143 IETSAKTRQGVDDAFYTLVREIRK 166
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 2 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
++ + L GNK+DLP+ R V+ + + A G+ F
Sbjct: 105 KDSE--------------------DVPMVLVGNKSDLPS--RTVDTKQAQDLARSYGIPF 142
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
+ETSAKT V++ F + +++ K
Sbjct: 143 IETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
++ + L GNK+DLP+ R V+ + + A G+ F
Sbjct: 105 KDSE--------------------DVPMVLVGNKSDLPS--RTVDTKQAQDLARSYGIPF 142
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
+ETSAKT V++ F + +++ K
Sbjct: 143 IETSAKTRQGVDDAFYTLVREIRK 166
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAGQE++ L YY AQ AII +D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N P
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGP 58
Query: 356 ITF-VW 360
I F VW
Sbjct: 59 IKFNVW 64
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 22/144 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
++ + L GNK DLP+ R V+ + + A G+ F
Sbjct: 105 KDSE--------------------DVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPF 142
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
+ETSAKT V++ F + +++ K
Sbjct: 143 IETSAKTRQGVDDAFYTLVREIRK 166
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 62 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV 121
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DLPT R V+ + A+ G+ F
Sbjct: 122 KDSD--------------------DVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPF 159
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 160 IETSAKTRQGVEDAFYTLVREI 181
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 21/144 (14%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
+ V LD ++ +I DTAGQE Y + Y+R+ + + V+ IT ++F + +++
Sbjct: 43 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
R VKE N+ L GNK+DL +R V E + A++ +
Sbjct: 103 R---------------VKE-----DENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWNV 141
Query: 201 LFMETSAKTAMNVNEIFVEIAKKL 224
++ETSAKT NV+++F ++ +++
Sbjct: 142 NYVETSAKTRANVDKVFFDLMREI 165
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
+ +K++++G VGKS+L L+F+ +F E E T
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 36
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAG E++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 55 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 108
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 109 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 149
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 150 NYNFEKPFLWLARKL 164
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N PI
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGPI 55
Query: 357 TF-VW 360
F VW
Sbjct: 56 KFNVW 60
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAG E++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 115 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 155
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 156 NYNFEKPFLWLARKL 170
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPI 356
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N PI
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGPI 61
Query: 357 TF-VW 360
F VW
Sbjct: 62 KFNVW 66
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 21/151 (13%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
+ V LD ++ +I DTAG E Y + Y+R+ + + V+ IT ++F + +++
Sbjct: 45 KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 104
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
R VKE N+ L GNK+DL +R V E + AE+ +
Sbjct: 105 R---------------VKE-----DENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNV 143
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
++ETSAKT NV+++F ++ +++ +++ +
Sbjct: 144 NYVETSAKTRANVDKVFFDLMREIRARKMED 174
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 329
Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 1 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 38
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
EI DTAG E++ + +Y +N Q +VY IT Q TF + +++ R+
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD------- 105
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTA 210
++ + L GNK DL R V +G+ A + F+E+SAK+
Sbjct: 106 -------------TEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSK 151
Query: 211 MNVNEIFVEIAKKLPK 226
+NVNEIF ++ +++ +
Sbjct: 152 INVNEIFYDLVRQINR 167
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
EI DTAG E++ + +Y +N Q +VY IT Q TF + +++ R+
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD------- 105
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTA 210
++ + L GNK DL R V +G+ A + F+E+SAK+
Sbjct: 106 -------------TEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSK 151
Query: 211 MNVNEIFVEIAKKLPK 226
+NVNEIF ++ +++ +
Sbjct: 152 INVNEIFYDLVRQINR 167
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+YKLV+LG VGKS+L ++FV+G F + + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI 36
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +WDTAG E++ L YY AQ AII++D+T++ T+ +W ++L R+
Sbjct: 59 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------ 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
NI I L GNK D+ R V+ ++ + + L + + SAK+
Sbjct: 113 ----------------ENIPIVLCGNKVDI--KDRKVK-AKSIVFHRKKNLQYYDISAKS 153
Query: 210 AMNVNEIFVEIAKKL 224
N + F+ +A+KL
Sbjct: 154 NYNFEKPFLWLARKL 168
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVP 355
Q+KLVL+G+ GK++ V R + G+F + +T+G E H + F N P
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV---HPLVFH-------TNRGP 58
Query: 356 ITF-VW 360
I F VW
Sbjct: 59 IKFNVW 64
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ + + +D + +IWDTAGQER+ +L +YR A ++ + + ++ +F +W K
Sbjct: 44 FLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQK 103
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E A VK+ P + + GNK D R V E + + E
Sbjct: 104 EFIYYAD------------VKD-----PEHFPFVVLGNKVD--KEDRQVTTEEAQTWCME 144
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKL 224
NG ++ETSAK NV F E +++
Sbjct: 145 NGDYPYLETSAKDDTNVTVAFEEAVRQV 172
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
K++LLG+ VGKSSL+ R+V +F TIG E
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVE 43
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 62 VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 121
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
++ + L GNK DLP+ R V+ + + A G+ F
Sbjct: 122 KDSE--------------------DVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPF 159
Query: 203 METSAKTAMNVNEIFVEIAKKLPK 226
+ETSAKT V++ F + +++ K
Sbjct: 160 IETSAKTRQGVDDAFYTLVREIRK 183
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 23/144 (15%)
Query: 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
+DD + EI DTAGQE + R + ++VYDIT++ +F + + P
Sbjct: 71 IDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSF----------EEVLP 119
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME 204
K+ + E+++ P N+ + L GNKADL SR+ V EGE A E F E
Sbjct: 120 --------LKNILDEIKK--PKNVTLILVGNKADLDHSRQ-VSTEEGEKLATELACAFYE 168
Query: 205 TSAKTAM-NVNEIFVEIAKKLPKK 227
SA T N+ EIF E+ +++ ++
Sbjct: 169 CSACTGEGNITEIFYELCREVRRR 192
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 290 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF 322
Q+ AK + KL + G + VGKS+LV+RF+ +F
Sbjct: 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRF 53
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
T+ +D + R +I DTAGQE + + Y R ++V+ I ++ +F ++
Sbjct: 47 TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI 106
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
R+ + D F + L GNKADL S+R V SE A+ +
Sbjct: 107 LRVK--DRDDFP------------------VVLVGNKADL-ESQRQVPRSEASAFGASHH 145
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226
+ + E SAK +NV+E F ++ + + K
Sbjct: 146 VAYFEASAKLRLNVDEAFEQLVRAVRK 172
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 40/194 (20%)
Query: 59 CMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118
C T + P +F + V +D + +WDTAGQE Y L P+ YR A +
Sbjct: 28 CYTSNKFPTDYIPTVFDN--FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85
Query: 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178
+ + + ++ ++ K W+ EL+R A PN+ I L G K D
Sbjct: 86 LAFSLISKASYENV--------------------LKKWMPELRRFA-PNVPIVLVGTKLD 124
Query: 179 LPTSR-------RCVEYSEGEAYAEENG-LLFMETSAKTAMNVNEIF---VEIA------ 221
L + + ++GE ++ G ++E S+KT NV +F +++
Sbjct: 125 LRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184
Query: 222 KKLPKKEVNNGQGG 235
K++P++ N+ + G
Sbjct: 185 KEVPRRRKNHRRSG 198
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 33/159 (20%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
+ P +F + V +D T+ +WDTAGQE Y+ L P+ YR A ++ + + ++ +
Sbjct: 35 YVPTVFDN--FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS 92
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
+ NI K W+ EL+ A P I I L G K DL ++ ++
Sbjct: 93 Y---------------ENIH-----KKWLPELKHYA-PGIPIVLVGTKLDLRDDKQFLKD 131
Query: 189 SEGEAY-----AEE-----NGLLFMETSAKTAMNVNEIF 217
G A EE + ++E S+KT NV +F
Sbjct: 132 HPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK+DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL + R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 31/148 (20%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D T+ +WDTAGQE Y+ L P+ YR A I+ + + ++ ++
Sbjct: 44 SANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV------- 96
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC---------VEYSE 190
AK W+ EL+ A P + I L G K DL ++ + ++
Sbjct: 97 -------------AKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQ 142
Query: 191 GEAYAEENGL-LFMETSAKTAMNVNEIF 217
GE + G +++E S+KT NV +F
Sbjct: 143 GEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK+DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 51 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 110
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 111 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 148
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 149 IETSAKTRQGVEDAFYTLVREI 170
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL + R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDL--AGRTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 49 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 109 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 146
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 147 IETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 49 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 109 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 146
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 147 IETSAKTRQGVEDAFYTLVREI 168
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKLPKKEV 229
+ETSAKT V + F + +++ + ++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREIRQHKL 168
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKLPKKEV 229
+ETSAKT V + F + +++ + ++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREIRQHKL 168
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 50 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 109
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 110 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 147
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 148 IETSAKTRQGVEDAFYTLVREI 169
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + ++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREF 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 34/145 (23%)
Query: 85 LDDV--TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
LDD I+F +WDTAGQE+ L +YY A AI+ +D+T++ T Q +
Sbjct: 54 LDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT----------CQNL 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-----CVEYSEGEAYAEE 197
A WVKE Q + I + NK D+ ++ +E +G+ Y
Sbjct: 104 A-----------RWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-- 150
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAK 222
+ E SAKTA N F+ +A+
Sbjct: 151 ----YFEISAKTAHNFGLPFLHLAR 171
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNV 354
YK+ L+G+ VGK++ + R + G+F + +T+G +H ++F N + NV
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA---VNHPVTFLDDQGNVIKFNV 65
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GN+ DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNRCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DT GQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DT GQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG+E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 21/157 (13%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
++ V L + DTAGQ+ Y L + ++VY +T+ +F +S ++L
Sbjct: 62 SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL 121
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
G K+ V + L GNKADL R V+ EG+ AE G
Sbjct: 122 HE---------GHGKTRVP-----------VVLVGNKADLSPERE-VQAVEGKKLAESWG 160
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGR 236
FME+SA+ IF ++ +++ + E + GQ R
Sbjct: 161 ATFMESSARENQLTQGIFTKVIQEIARVENSYGQERR 197
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
K+V+LG VGK+SL +FV G+F E + T+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV 57
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D +I DTAGQE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 22 CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 71
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 72 RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 110
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
N+ I L GNK DL +RR V+ EG A G +ME SAKT V
Sbjct: 111 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 170
Query: 215 EIF 217
E+F
Sbjct: 171 EVF 173
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 22 CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 71
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 72 RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 110
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
N+ I L GNK DL +RR V+ EG A G +ME SAKT V
Sbjct: 111 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 170
Query: 215 EIF 217
E+F
Sbjct: 171 EVF 173
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTA QE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKXDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTA QE Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKXDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 49 VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 109 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 146
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 147 IETSAKTRQGVEDAFYTLVREI 168
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 23 CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 72
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 73 RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 111
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
N+ I L GNK DL +RR V+ EG A G +ME SAKT V
Sbjct: 112 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 171
Query: 215 EIF 217
E+F
Sbjct: 172 EVF 174
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 41
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 20 CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 69
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 70 RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 108
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
N+ I L GNK DL +RR V+ EG A G +ME SAKT V
Sbjct: 109 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 168
Query: 215 EIF 217
E+F
Sbjct: 169 EVF 171
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 38
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 24 CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 73
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 74 RPLSYPDTDVILMCFSIDSPDSLE---------------NI-----PEKWTPEVKHFC-P 112
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
N+ I L GNK DL +RR V+ EG A G +ME SAKT V
Sbjct: 113 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 172
Query: 215 EIF 217
E+F
Sbjct: 173 EVF 175
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 42
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 22 CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 71
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 72 RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 110
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
N+ I L GNK DL +RR V+ EG A G +ME SAKT V
Sbjct: 111 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 170
Query: 215 EIF 217
E+F
Sbjct: 171 EVF 173
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 21 CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 70
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 71 RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 109
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
N+ I L GNK DL +RR V+ EG A G +ME SAKT V
Sbjct: 110 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 169
Query: 215 EIF 217
E+F
Sbjct: 170 EVF 172
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 39
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 21 CLLIVFSKDQ---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 70
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 71 RPLSYPDTDVILMCFSIDSPDSLE---------------NI-----PEKWTPEVKHFC-P 109
Query: 167 NIVIALAGNKADLPT---SRR--------CVEYSEGEAYAEENGLL-FMETSAKTAMNVN 214
N+ I L GNK DL +RR V+ EG A G +ME SAKT V
Sbjct: 110 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 169
Query: 215 EIF 217
E+F
Sbjct: 170 EVF 172
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV 39
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68 VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
V+ P +F + +D + +WDTAGQE Y L P+ Y + ++ + I + D
Sbjct: 33 VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
+ NI + W E++ PN+ I L GNK DL +RR
Sbjct: 91 SL---------------ENI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
V+ EG A G +ME SAKT V E+F
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68 VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
V+ P +F + +D + +WDTAGQE Y L P+ Y + ++ + I + D
Sbjct: 33 VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
+ NI + W E++ PN+ I L GNK DL +RR
Sbjct: 91 SL---------------ENI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
V+ EG A G +ME SAKT V E+F
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAG E Y + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D T +I DTAGQE + Y R + + V+ I N +F + ++++R+
Sbjct: 44 VVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202
+ ++ + L GNK DL R VE + + A G+ +
Sbjct: 104 KDSD--------------------DVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPY 141
Query: 203 METSAKTAMNVNEIFVEIAKKL 224
+ETSAKT V + F + +++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 40 CLLIVFSKDQ---FPEVYVPTVFENYI-------ADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 90 RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFX-P 128
Query: 167 NIVIALAGNKADL---PTSRRCVEYSEGEAYAEENG---------LLFMETSAKTAMNVN 214
N+ I L GNK DL +RR + + E E G ++E SAKT V
Sbjct: 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVR 188
Query: 215 EIF 217
E+F
Sbjct: 189 EVF 191
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68 VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
V+ P +F + +D + +WDTAGQE Y L P+ Y + ++ + I + D
Sbjct: 31 VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 88
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
+ NI + W E++ PN+ I L GNK DL +RR
Sbjct: 89 SLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 127
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
V+ EG A G +ME SAKT V E+F
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68 VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
V+ P +F + +D + +WDTAGQE Y L P+ Y + ++ + I + D
Sbjct: 33 VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
+ NI + W E++ PN+ I L GNK DL +RR
Sbjct: 91 SLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
V+ EG A G +ME SAKT V E+F
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 68 VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
V+ P +F + +D + +WDTAGQE Y L P+ Y + ++ + I + D
Sbjct: 31 VYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 88
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
+ NI + W E++ PN+ I L GNK DL +RR
Sbjct: 89 SLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 127
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
V+ EG A G +ME SAKT V E+F
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD+ ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 40 CLLIVFSKDQ---FPEVYVPTVFENYI-------ADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + I + D+ NI + W E++ P
Sbjct: 90 RPLSYPDTDVILMCFSIDSPDSL---------------ENI-----PEKWTPEVKHFC-P 128
Query: 167 NIVIALAGNKADL---PTSRRCVEYSEGEAYAEENG---------LLFMETSAKTAMNVN 214
N+ I L GNK DL +RR + + E E G ++E SAKT V
Sbjct: 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVR 188
Query: 215 EIF 217
E+F
Sbjct: 189 EVF 191
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ + ++ + +IWD GQ + Y AQ ++VYDITN +F + W
Sbjct: 44 FLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWY- 102
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ VK++ + ++AL GNK DL R ++ + + +E
Sbjct: 103 -----------------TVVKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRFCQE 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230
NG SAKT +V F ++A ++ ++N
Sbjct: 145 NGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
Q K+V+LG+ A GK+SL F + F + + TIG
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG 40
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 31/148 (20%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V ++ T+ +WDTAGQE Y+ L P+ YR A I+ + + ++ ++
Sbjct: 46 SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV------- 98
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC---------VEYSE 190
+K W+ EL+ A P + I L G K DL ++ + +
Sbjct: 99 -------------SKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQ 144
Query: 191 GEAYAEENGL-LFMETSAKTAMNVNEIF 217
GE + G ++E S+K+ NV +F
Sbjct: 145 GEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 35/162 (21%)
Query: 68 VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
V+ P +F +I + +D + +WDTAGQE Y L P+ Y + ++ + I + D
Sbjct: 33 VYVPTVFEN-YIAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 90
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL---PTSRR 184
+ NI + W E++ PN+ I L GNK DL +RR
Sbjct: 91 SL---------------ENI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRR 129
Query: 185 CVEYSEGEAYAEENG---------LLFMETSAKTAMNVNEIF 217
+ + E E G ++E SAKT V E+F
Sbjct: 130 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 79 ITQTVCLDDVTIRFEIW--DTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
+ V + D T+ E++ DTAG + Y Y+ AI+V+D+++ ++F K+W
Sbjct: 60 VVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF 119
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
EL + A P+ + RA L NK DLP R V + +A
Sbjct: 120 -ELLKSARPDRERPLRA-----------------VLVANKTDLPPQRHQVRLDMAQDWAT 161
Query: 197 ENGLLFMETSAK-TAMNVNEIFVEIA 221
N L F + SA + + F+ IA
Sbjct: 162 TNTLDFFDVSANPPGKDADAPFLSIA 187
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 40/170 (23%)
Query: 67 VVFYPYLFSAAFI-------TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119
+VF F A ++ + +D + +WDTAGQE Y P+ Y + ++
Sbjct: 23 IVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILM 82
Query: 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179
+ I + D+ NI + W E++ PN+ I L GNK DL
Sbjct: 83 CFSIDSPDSLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDL 121
Query: 180 ----PTSRRC-------VEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
T+R V+ +EG A G +ME SAKT V E+F
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y ++I + + + +F
Sbjct: 45 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV------- 97
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 98 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 143
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 144 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 175
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y ++I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y ++I + + + +F
Sbjct: 43 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV------- 95
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 96 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 141
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 142 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
Q + D +I DT G ++ + + A I+VY IT++ + ++EL+
Sbjct: 42 QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS-------LEELK 94
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
+ + G +S I I L GNK D SR V+ SE EA A
Sbjct: 95 PIYEQICEIKGDVES------------IPIMLVGNKCDESPSRE-VQSSEAEALARTWKC 141
Query: 201 LFMETSAKTAMNVNEIFVEI 220
FMETSAK NV E+F E+
Sbjct: 142 AFMETSAKLNHNVKELFQEL 161
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHE 324
Y++ + G VGKSSLVLRFV+G F E
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRE 30
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y ++I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 33/145 (22%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ IWDTAGQ+ Y L P++Y +A ++ +D+T+ ++F +
Sbjct: 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD-----------------NI 124
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEGEAYAEEN 198
F R W E+ + I + G K DL + V Y G+ A
Sbjct: 125 FNR---WYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180
Query: 199 G-LLFMETSAKTAMNVNEIFVEIAK 222
G + ++E SA+ NV+ +F E A+
Sbjct: 181 GAVAYLECSARLHDNVHAVFQEAAE 205
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
K+VL+G+ GK+SL++ F G F E T+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 35/162 (21%)
Query: 68 VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
V+ P +F + +D + +WDTAG E Y L P+ Y + ++ + I + D
Sbjct: 36 VYVPTVFEN--YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD 93
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT---SRR 184
+ NI + W E++ PN+ I L GNK DL +RR
Sbjct: 94 SLE---------------NI-----PEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 132
Query: 185 --------CVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
V+ EG A G +ME SAKT V E+F
Sbjct: 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
T+ + ++ ++ DTAGQ+ Y Y + I+VY +T+ +F K +L
Sbjct: 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+D G+ + I I L GNK DL R + Y EG+A AE
Sbjct: 104 -------LDMVGKVQ-------------IPIMLVGNKKDLHM-ERVISYEEGKALAESWN 142
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG 234
F+E+SAK ++F I + K + QG
Sbjct: 143 AAFLESSAKENQTAVDVFRRIILEAEKMDGACSQG 177
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 39
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
T+ + ++ ++ DTAGQ+ Y Y + I+VY +T+ +F K +L
Sbjct: 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+D G+ + I I L GNK DL R + Y EG+A AE
Sbjct: 104 -------LDMVGKVQ-------------IPIMLVGNKKDLHM-ERVISYEEGKALAESWN 142
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
F+E+SAK ++F I + K E
Sbjct: 143 AAFLESSAKENQTAVDVFRRIILEAEKLE 171
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 39
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS----W 135
+ V +D + +WDTAGQE Y L P+ Y DIT++ G+ K +
Sbjct: 43 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSR---GKDKPIADVF 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-------- 187
+ ++P + + RAK W E++ PN I L G K DL + +E
Sbjct: 100 LICFSLVSPASFENV-RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLT 156
Query: 188 ---YSEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
Y +G A A+E G + ++E SA T + +F E
Sbjct: 157 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 192
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 68 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 120
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 121 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 48 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 100
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 101 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 146
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 147 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 178
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 68 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 120
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 121 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 43/183 (23%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106
C+ ++ KD ++ + VF Y+ + +D + +WDTAGQE Y L
Sbjct: 40 CLLIVFSKDE---FPEVYVPTVFENYV-------ADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166
P+ Y + ++ + + + D+ NI + WV E++ P
Sbjct: 90 RPLSYPDTDVILMCFSVDSPDSL---------------ENI-----PEKWVPEVKHFC-P 128
Query: 167 NIVIALAGNKADLPTSRRC-----------VEYSEGEAYAEE-NGLLFMETSAKTAMNVN 214
N+ I L NK DL + V +G A A ++E SAKT V
Sbjct: 129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVR 188
Query: 215 EIF 217
E+F
Sbjct: 189 EVF 191
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 33/149 (22%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 63 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV---------- 112
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
RAK W E++ PN I L G K DL + +E Y +G
Sbjct: 113 ---------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 161
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVE 219
A A+E G + ++E SA T + +F E
Sbjct: 162 LAMAKEIGAVKYLECSALTQRGLKTVFDE 190
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 33/159 (20%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVEIAKKLPK 226
+G A A+E G + ++E SA T + +F E + + K
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 40/165 (24%)
Query: 74 FSAAFI-------TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ 126
FS +I + V +D + +WDTAGQE Y L P+ Y +I + + +
Sbjct: 38 FSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 97
Query: 127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186
+F RAK W E+ R PN I L G K DL + +
Sbjct: 98 ASFENV-------------------RAK-WYPEV-RHHCPNTPIILVGTKLDLRDDKDTI 136
Query: 187 E-----------YSEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
E Y +G A A+E G + ++E SA T + +F E
Sbjct: 137 EKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
T+ + ++ ++ DTAGQ+ Y Y + I+VY +T+ +F K +L
Sbjct: 42 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 101
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+D G+ + I I L GNK DL R + Y EG+A AE
Sbjct: 102 -------LDMVGKVQ-------------IPIMLVGNKKDLHM-ERVISYEEGKALAESWN 140
Query: 200 LLFMETSAKTAMNVNEIFVEI 220
F+E+SAK ++F I
Sbjct: 141 AAFLESSAKENQTAVDVFRRI 161
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTI 37
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 41/173 (23%)
Query: 58 DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
DC + + VF Y S TQ I +WDT+G Y + P+ Y ++ A
Sbjct: 51 DCFPENYVPTVFENYTASFEIDTQR-------IELSLWDTSGSPYYDNVRPLSYPDSDAV 103
Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
+I +DI+ +T K W E+Q PN + L G K+
Sbjct: 104 LICFDISRPETLDSV--------------------LKKWKGEIQEFC-PNTKMLLVGCKS 142
Query: 178 DLPTS-----------RRCVEYSEGEAYAEENG-LLFMETSAKTAMN-VNEIF 217
DL T + V Y +G A++ G ++E SA + N V +IF
Sbjct: 143 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
T+ + ++ ++ DTAGQ+ Y Y + I+VY +T+ +F K +L
Sbjct: 39 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 98
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+D G+ + I I L GNK DL R + Y EG+A AE
Sbjct: 99 -------LDMVGKVQ-------------IPIMLVGNKKDLHM-ERVISYEEGKALAESWN 137
Query: 200 LLFMETSAKTAMNVNEIFVEI 220
F+E+SAK ++F I
Sbjct: 138 AAFLESSAKENQTAVDVFRRI 158
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 34
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 41/173 (23%)
Query: 58 DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
DC + + VF Y S TQ I +WDT+G Y + P+ Y ++ A
Sbjct: 46 DCFPENYVPTVFENYTASFEIDTQR-------IELSLWDTSGSPYYDNVRPLSYPDSDAV 98
Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
+I +DI+ +T K W E+Q PN + L G K+
Sbjct: 99 LICFDISRPETLDSV--------------------LKKWKGEIQEFC-PNTKMLLVGCKS 137
Query: 178 DLPTS-----------RRCVEYSEGEAYAEENG-LLFMETSAKTAMN-VNEIF 217
DL T + V Y +G A++ G ++E SA + N V +IF
Sbjct: 138 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 41/173 (23%)
Query: 58 DCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117
DC + + VF Y S TQ I +WDT+G Y + P+ Y ++ A
Sbjct: 30 DCFPENYVPTVFENYTASFEIDTQR-------IELSLWDTSGSPYYDNVRPLSYPDSDAV 82
Query: 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177
+I +DI+ +T K W E+Q PN + L G K+
Sbjct: 83 LICFDISRPETLDSV--------------------LKKWKGEIQEFC-PNTKMLLVGCKS 121
Query: 178 DLPTS-----------RRCVEYSEGEAYAEENG-LLFMETSAKTAMN-VNEIF 217
DL T + V Y +G A++ G ++E SA + N V +IF
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 35/162 (21%)
Query: 68 VFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
V+ P +F V +D + +WDTAGQE Y L P+ Y ++ +I + I D
Sbjct: 38 VYVPTVFEN--YVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPD 95
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187
+ + + W+ E+ + I L G K DL + +E
Sbjct: 96 SLENVQ--------------------EKWIAEVLHFC-QGVPIILVGCKVDLRNDPQTIE 134
Query: 188 Y-----------SEGEAYAEENGLL-FMETSAKTAMNVNEIF 217
EG++ A++ G + E SAKT V E+F
Sbjct: 135 QLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
KLV++G+ A GK+ L++ +GQF E T+
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV 43
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
++ DTAGQE + + Y R +IVY +T++ +F ++D F
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE---------------HVDRFH 112
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT-A 210
+ VK+ R + P I++A NK DL R V +G+ A + + ++ETSAK
Sbjct: 113 QLILRVKD--RESFPMILVA---NKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 211 MNVNEIFVEIAK 222
+NV++ F ++ +
Sbjct: 167 LNVDKTFHDLVR 178
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAG E Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 81 QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140
Q + D +I DT G ++ + + A I+V+ +T +K ++EL
Sbjct: 47 QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVT-------SKQSLEEL- 98
Query: 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
P + K V+ +I + L GNK D ++R V+ E +A A+E
Sbjct: 99 ---GPIYKLIVQIKGSVE--------DIPVMLVGNKCD--ETQREVDTREAQAVAQEWKC 145
Query: 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRR 237
FMETSAK NV E+F E+ ++ ++ G+R
Sbjct: 146 AFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKR 182
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
++ DTAGQE + + Y R +IVY +T++ +F ++D F
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE---------------HVDRFH 112
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT-A 210
+ VK+ R + P I++A NK DL R+ V +G+ A + + ++ETSAK
Sbjct: 113 QLILRVKD--RESFPMILVA---NKVDLMHLRK-VTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 211 MNVNEIFVEIAK 222
+NV++ F ++ +
Sbjct: 167 LNVDKTFHDLVR 178
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
++ DTAGQE + + Y R +IVY +T++ +F ++D F
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE---------------HVDRFH 112
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT-A 210
+ VK+ R + P I++A NK DL R+ V +G+ A + + ++ETSAK
Sbjct: 113 QLILRVKD--RESFPMILVA---NKVDLMHLRK-VTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 211 MNVNEIFVEIAK 222
+NV++ F ++ +
Sbjct: 167 LNVDKTFHDLVR 178
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAG E Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
++ DTAGQE + + Y R +IVY +T++ +F ++D F
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE---------------HVDRFH 107
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT-A 210
+ VK+ R + P I++A NK DL R+ V +G+ A + + ++ETSAK
Sbjct: 108 QLILRVKD--RESFPMILVA---NKVDLMHLRK-VTRDQGKEMATKYNIPYIETSAKDPP 161
Query: 211 MNVNEIFVEIAK 222
+NV++ F ++ +
Sbjct: 162 LNVDKTFHDLVR 173
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L YY+N QA I V D ++D G A+ +EL +M
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKM------- 110
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
L N ++ + NK DLP + E +E
Sbjct: 111 ----------LNEDEMRNAILLVFANKHDLPQAMSISEVTE 141
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + ++
Sbjct: 47 SANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENV------- 99
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ P +I L G K DL + +E Y
Sbjct: 100 ------------RAK-WFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITY 145
Query: 189 SEGEAYAEE-NGLLFMETSAKTAMNVNEIFVE 219
+G A A+E + + ++E SA T + +F E
Sbjct: 146 PQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAG E Y L P+ Y +I + + + +F
Sbjct: 44 SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 96
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 97 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 142
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 143 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 33/149 (22%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D + +WDTAGQE Y L P+ Y +I + + + ++
Sbjct: 44 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENV---------- 93
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
RAK W E++ P +I L G K DL + +E Y +G
Sbjct: 94 ---------RAK-WFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQG 142
Query: 192 EAYAEE-NGLLFMETSAKTAMNVNEIFVE 219
A A+E + + ++E SA T + +F E
Sbjct: 143 LALAKEIDSVKYLECSALTQRGLKTVFDE 171
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAG E Y L P+ Y +I + + + +F
Sbjct: 68 SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 120
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ PN I L G K DL + +E Y
Sbjct: 121 ------------RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A+E G + ++E SA T + +F E
Sbjct: 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + ++
Sbjct: 48 SANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENV------- 100
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ P +I L G K DL + +E Y
Sbjct: 101 ------------RAK-WFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITY 146
Query: 189 SEGEAYAEE-NGLLFMETSAKTAMNVNEIFVE 219
+G A A+E + + ++E SA T + +F E
Sbjct: 147 PQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 42 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 94
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ P+ I L G K DL + +E Y
Sbjct: 95 ------------RAK-WYPEVRHHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITY 140
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A E G + ++E SA T + +F E
Sbjct: 141 PQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I ++W+ G+ + L + A +IVY IT++ +F +A +L+R
Sbjct: 59 ILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT---- 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
+I I L GNK+DL R V SEG A A F+ETSA
Sbjct: 113 ----------------EDIPIILVGNKSDLVRXRE-VSVSEGRAXAVVFDCKFIETSAAV 155
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRL 238
NV E+F I +++ + + + RRL
Sbjct: 156 QHNVKELFEGIVRQVRLRRDSKEKNERRL 184
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 42 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 94
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ P+ I L G K DL + +E Y
Sbjct: 95 ------------RAK-WYPEVRHHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITY 140
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVE 219
+G A A E G + ++E SA T + +F E
Sbjct: 141 PQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ Y +I + + + +F
Sbjct: 41 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENV------- 93
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------Y 188
RAK W E++ P+ I L G K DL + +E Y
Sbjct: 94 ------------RAK-WYPEVRHHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITY 139
Query: 189 SEGEAYAEENG-LLFMETSAKTAMNVNEIFVE 219
+G A A E G + ++E SA T + +F E
Sbjct: 140 PQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ+R +L YYRN + I V D ++ G A+ + +QRM +
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAR---EVMQRMLNED--- 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
EL+ N V + NK DLP + E +E
Sbjct: 115 ---------ELR-----NAVWLVFANKQDLPEAMSAAEITE 141
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I ++W+ G+ + L + A +IVY IT++ +F +A +L+R
Sbjct: 59 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT---- 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
+I I L GNK+DL R V SEG A A F+ETSA
Sbjct: 113 ----------------EDIPIILVGNKSDLVRXRE-VSVSEGRAXAVVFDXKFIETSAAV 155
Query: 210 AMNVNEIFVEIAKKLPKKEVNNGQGGRRL 238
NV E+F I +++ + + + RRL
Sbjct: 156 QHNVKELFEGIVRQVRLRRDSKEKNERRL 184
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D + +WDTAG E Y L P+ Y +I + + + +F
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHV---------- 245
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
RAK W E+ R PN I L G K DL + +E Y +G
Sbjct: 246 ---------RAK-WYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVE 219
A A+E G + ++E SA T + +F E
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D + +WDTAG E Y L P+ Y +I + + + +F
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHV---------- 245
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
RAK W E+ R PN I L G K DL + +E Y +G
Sbjct: 246 ---------RAK-WYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVE 219
A A+E G + ++E SA T + +F E
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D + +WDTAG E Y L P+ Y +I + + + +F
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHV---------- 245
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-----------YSEG 191
RAK W E+ R PN I L G K DL + +E Y +G
Sbjct: 246 ---------RAK-WYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVE 219
A A+E G + ++E SA T + +F E
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ+R +L YYRN + I V D ++ G A+ + +QRM N D
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAR---EVMQRML--NEDE 115
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
R +W +V A NK DLP + E +E
Sbjct: 116 L-RNAAW-----------LVFA---NKQDLPEAMSAAEITE 141
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ+R +L YYRN + I V D ++ G A+ + +QRM N D
Sbjct: 44 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAR---EVMQRML--NEDE 98
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
R +W+ + NK DLP + E +E
Sbjct: 99 L-RNAAWL--------------VFANKQDLPEAMSAAEITE 124
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 48/185 (25%)
Query: 48 MAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEI--WDTAGQERYHT 105
M Q+ KD C + + VF Y T CL+ R E+ WDT+G Y
Sbjct: 43 MLQVLAKD---CYPETYVPTVFENY---------TACLETEEQRVELSLWDTSGSPYYDN 90
Query: 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165
+ P+ Y ++ A ++ +DI+ +T A K W E+ P
Sbjct: 91 VRPLCYSDSDAVLLCFDISRPETVDSA--------------------LKKWRTEILDYCP 130
Query: 166 PNIVIALAGNKADLPTS-----------RRCVEYSEGEAYAEENGL-LFMETSAKTA-MN 212
V+ L G K DL T + + Y +G A A++ G +++E SA T+ +
Sbjct: 131 STRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 189
Query: 213 VNEIF 217
++ IF
Sbjct: 190 IHSIF 194
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 48/185 (25%)
Query: 48 MAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEI--WDTAGQERYHT 105
M Q+ KD C + + VF Y T CL+ R E+ WDT+G Y
Sbjct: 26 MLQVLAKD---CYPETYVPTVFENY---------TACLETEEQRVELSLWDTSGSPYYDN 73
Query: 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165
+ P+ Y ++ A ++ +DI+ +T A K W E+ P
Sbjct: 74 VRPLCYSDSDAVLLCFDISRPETVDSA--------------------LKKWRTEILDYCP 113
Query: 166 PNIVIALAGNKADLPTS-----------RRCVEYSEGEAYAEENGL-LFMETSAKTA-MN 212
V+ L G K DL T + + Y +G A A++ G +++E SA T+ +
Sbjct: 114 STRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 172
Query: 213 VNEIF 217
++ IF
Sbjct: 173 IHSIF 177
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 48/185 (25%)
Query: 48 MAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEI--WDTAGQERYHT 105
M Q+ KD C + + VF Y T CL+ R E+ WDT+G Y
Sbjct: 27 MLQVLAKD---CYPETYVPTVFENY---------TACLETEEQRVELSLWDTSGSPYYDN 74
Query: 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165
+ P+ Y ++ A ++ +DI+ +T A K W E+ P
Sbjct: 75 VRPLCYSDSDAVLLCFDISRPETVDSA--------------------LKKWRTEILDYCP 114
Query: 166 PNIVIALAGNKADLPTS-----------RRCVEYSEGEAYAEENGL-LFMETSAKTA-MN 212
V+ L G K DL T + + Y +G A A++ G +++E SA T+ +
Sbjct: 115 STRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 173
Query: 213 VNEIF 217
++ IF
Sbjct: 174 IHSIF 178
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I ++W+ G+ + L + A +IVY IT++ +F +A +L+R
Sbjct: 59 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT---- 112
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
+I I L GNK+DL R V SEG A A F+ETSA
Sbjct: 113 ----------------EDIPIILVGNKSDLVRCRE-VSVSEGRACAVVFDCKFIETSAAV 155
Query: 210 AMNVNEIFVEIAKKL 224
NV E+F I +++
Sbjct: 156 QHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I ++W+ G+ + L + A +IVY IT++ +F +A +L+R
Sbjct: 90 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT---- 143
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
+I I L GNK+DL R V SEG A A F+ETSA
Sbjct: 144 ----------------EDIPIILVGNKSDLVRCRE-VSVSEGRACAVVFDCKFIETSAAV 186
Query: 210 AMNVNEIFVEIAKKL 224
NV E+F I +++
Sbjct: 187 QHNVKELFEGIVRQV 201
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 37/140 (26%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRA 153
++DTAGQE Y L P+ Y +I + + N +F K
Sbjct: 70 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVK-------------------- 109
Query: 154 KSWVKELQRMAPPNIVIALAGNKADLPTSRR-------------CVEYSEGEAYAEENG- 199
+ WV EL+ A PN+ L G + DL + CVE +G+ A+E G
Sbjct: 110 EEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVE--QGQKLAKEIGA 166
Query: 200 LLFMETSAKTAMNVNEIFVE 219
++E SA T + +F E
Sbjct: 167 CCYVECSALTQKGLKTVFDE 186
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 84 CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMA 143
C+ I F +WD GQ+R +L YY N + I V D ++ G A+ + +QRM
Sbjct: 55 CVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAR---EVMQRML 111
Query: 144 PPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
N D A +W+ + NK DLP + E +E
Sbjct: 112 --NEDELCNA-AWL--------------VFANKQDLPEAMSAAEITE 141
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGR-AKSWVKELQRMAPPNIDTF 150
+WDTAGQE Y L P+ Y ++ ++ + + N+ +F + W E++ IDT
Sbjct: 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY----IDT- 127
Query: 151 GRAKSWVKELQRMAPPNIVIALAGNKADL-PTSRRCVEYSEGEAYAEENG-LLFMETSAK 208
AK+ L G K DL V EG+ ++ G + ++E S+
Sbjct: 128 --AKT---------------VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170
Query: 209 TAMNVNEIF 217
+ +NE+F
Sbjct: 171 AKIGLNEVF 179
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQ 321
K+V++G+ AVGK+ L+L F +G+
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGE 47
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGR-AKSWVKELQRMAPPNIDTF 150
+WDTAGQE Y L P+ Y ++ ++ + + N+ +F + W E++ IDT
Sbjct: 72 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY----IDT- 126
Query: 151 GRAKSWVKELQRMAPPNIVIALAGNKADL-PTSRRCVEYSEGEAYAEENG-LLFMETSAK 208
AK+ L G K DL V EG+ ++ G + ++E S+
Sbjct: 127 --AKT---------------VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 169
Query: 209 TAMNVNEIF 217
+ +NE+F
Sbjct: 170 AKIGLNEVF 178
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQ 321
K+V++G+ AVGK+ L+L F +G+
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGE 46
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
F +WD GQ+R L Y++N Q I V D +++ R + ELQ+M
Sbjct: 63 FTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRE---RIQEVADELQKMLL------- 112
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
V EL+ + V+ L NK DLP + E ++
Sbjct: 113 -----VDELR-----DAVLLLFANKQDLPNAMAISEMTD 141
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L Y++N Q I V D ++D A+ EL RM +
Sbjct: 64 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNED--- 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
EL+ + V+ + NK DLP + E ++
Sbjct: 118 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 144
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 33/150 (22%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D +R ++ DTAGQ+ + L P+ Y N ++ + + + +F
Sbjct: 58 SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNV------- 110
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-------RRCVEYSEGE 192
++ WV E+ R P I L G ++DL +C E E
Sbjct: 111 -------------SEKWVPEI-RCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPE 156
Query: 193 AYA-----EENGLLFMETSAKTAMNVNEIF 217
A E ++E SA T N+ E+F
Sbjct: 157 EAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 48/174 (27%)
Query: 30 IPKGNWFSMMSGKRQ-------------SDCMAQIWLKDRVDCMTQIVINVVFYPYLFSA 76
+P+G+ FS + GK+Q + + ++ L + V + I NV Y
Sbjct: 15 VPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---- 70
Query: 77 AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
+ +C F +WD GQ++ L Y++N Q I V D +++ R +
Sbjct: 71 ----KNIC-------FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVQESA 116
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
ELQ+M LQ + V+ + NK D+P + E ++
Sbjct: 117 DELQKM-----------------LQEDELRDAVLLVFANKQDMPNAMPVSELTD 153
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L Y++N Q I V D +++ A+ +EL RM +
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAED--- 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
EL+ + V+ + NK DLP + E ++
Sbjct: 115 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 141
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD GQ++ L YY Q I V D ++D A+
Sbjct: 44 TVGFNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 100
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ +E++ + +I + NK DLP + + E E
Sbjct: 101 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 137
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L Y++N Q I V D +++ A+ +EL RM +
Sbjct: 60 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAED--- 113
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
EL+ + V+ + NK DLP + E ++
Sbjct: 114 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 140
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L YY N I V D +++ A+ +EL RM
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR---EELHRMINE---- 113
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL+ + +I + NK DLP + E +E
Sbjct: 114 --------EELK-----DAIILVFANKQDLPNAMSAAEVTE 141
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD GQ++ L YY Q I V D ++D A+
Sbjct: 43 TVGFNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 99
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ +E++ + +I + NK DLP + + E E
Sbjct: 100 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 136
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L Y++N Q I V D +++ A+ +EL RM +
Sbjct: 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAED--- 97
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
EL+ + V+ + NK DLP + E ++
Sbjct: 98 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 124
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD GQ++ L YY Q I V D ++D A+
Sbjct: 31 TVGFNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 87
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ +E++ + +I + NK DLP + + E E
Sbjct: 88 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 124
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD GQ++ L YY Q I V D ++D A+
Sbjct: 31 TVGFNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 87
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ +E++ + +I + NK DLP + + E E
Sbjct: 88 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 124
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
I F +WD GQ++ L Y++N Q I V D +++ A+ +EL RM +
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAED-- 262
Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
EL+ + V+ + NK DLP + E ++
Sbjct: 263 ----------ELR-----DAVLLVFANKQDLPNAMNAAEITD 289
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD GQ++ L YY Q I V D ++D A+
Sbjct: 31 TVGFNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 87
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ + + +I + NK DLP + + E E
Sbjct: 88 --QELHRI-----------------INDREXRDAIILIFANKQDLPDAXKPHEIQE 124
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD GQ++ L YY Q I V D ++D A+
Sbjct: 353 TVGFNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 409
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ +E++ + +I + NK DLP + + E E
Sbjct: 410 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 446
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 28/135 (20%)
Query: 92 FEIWDTAGQERY--HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++IW+ G H +A A +IVY +T++ +F +A +L+R +
Sbjct: 54 YDIWEQDGGRWLPGHCMA-----MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD--- 105
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
++ I L GNK+DL SR V EG A A F+ETSA
Sbjct: 106 -----------------DVPIILVGNKSDLVRSRE-VSVDEGRACAVVFDCKFIETSAAL 147
Query: 210 AMNVNEIFVEIAKKL 224
NV +F + +++
Sbjct: 148 HHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 28/135 (20%)
Query: 92 FEIWDTAGQERY--HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++IW+ G H +A A +IVY +T++ +F +A +L+R +
Sbjct: 59 YDIWEQDGGRWLPGHCMA-----MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD--- 110
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
++ I L GNK+DL SR V EG A A F+ETSA
Sbjct: 111 -----------------DVPIILVGNKSDLVRSRE-VSVDEGRACAVVFDCKFIETSAAL 152
Query: 210 AMNVNEIFVEIAKKL 224
NV +F + +++
Sbjct: 153 HHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 28/135 (20%)
Query: 92 FEIWDTAGQERY--HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++IW+ G H +A A +IVY +T++ +F +A +L+R +
Sbjct: 59 YDIWEQDGGRWLPGHCMA-----MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD--- 110
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT 209
++ I L GNK+DL SR V EG A A F+ETSA
Sbjct: 111 -----------------DVPIILVGNKSDLVRSRE-VSVDEGRACAVVFDCKFIETSAAL 152
Query: 210 AMNVNEIFVEIAKKL 224
NV +F + +++
Sbjct: 153 HHNVQALFEGVVRQI 167
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD G ++ L YY Q I V D ++D A+
Sbjct: 44 TVGFNVETVTYKNV--KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 100
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ +E++ + +I + NK DLP + + E E
Sbjct: 101 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 137
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD G ++ L Y++N Q I V D +++ A+ +EL RM +
Sbjct: 46 ISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAED--- 99
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
EL+ + V+ + NK DLP + E ++
Sbjct: 100 ---------ELR-----DAVLLVFANKQDLPNAMNAAEITD 126
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD G ++ L YY Q I V D ++D A+
Sbjct: 33 TVGFNVETVTYKNV--KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 89
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ +E++ + +I + NK DLP + + E E
Sbjct: 90 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 126
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 22/116 (18%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F +TV +V +F +WD G ++ L YY Q I V D ++D A+
Sbjct: 34 TVGFNVETVTYKNV--KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR- 90
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+EL R+ +E++ + +I + NK DLP + + E E
Sbjct: 91 --QELHRIIND------------REMR-----DAIILIFANKQDLPDAMKPHEIQE 127
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 56 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 107
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 109
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 65 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 116
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 59 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 110
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 108
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 113
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 108
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 109
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 113
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
++DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIA 171
+ A +IVY I ++ +F A +L+R + ++ I
Sbjct: 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQAD--------------------HVPII 115
Query: 172 LAGNKADLPTSRRCVEYS--EGEAYAEENGLLFMETSAKTAMNVNEIF 217
L GNKADL RC E S EG A A F+ETSA NV E+F
Sbjct: 116 LVGNKADLA---RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 29/129 (22%)
Query: 92 FEIW---DTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
++IW D G R H L + A +IV+ +T++ +F + + L R P+ D
Sbjct: 77 YDIWEQGDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHD 130
Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAK 208
+ + L GNK+DL SR V EG A +ETSA
Sbjct: 131 -------------------LPVILVGNKSDLARSRE-VSLEEGRHLAGTLSCKHIETSAA 170
Query: 209 TAMNVNEIF 217
N E+F
Sbjct: 171 LHHNTRELF 179
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS-WVKELQRMAP 144
+ DTAGQE Y L P+ Y ++ + + + +F K WV E+ P
Sbjct: 55 LRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
++F++WD GQ YY N A I V D ++D G +KS
Sbjct: 46 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 90
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
I FE+WD GQ Y+ + A I V D T++D G AK
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK 109
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ 126
++ F ++D +GQ RY L YY+ QA I V D +++
Sbjct: 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 115 QAAIIVYDITNQDTFGRAKSWVKE---------LQRMAPPNIDTFGRAKSWVKELQRMAP 165
+ +IVYDI Q G A W+++ L + + +F + + L+ P
Sbjct: 50 EVTLIVYDIWEQ---GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 106
Query: 166 P-NIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIF 217
++ + L GNK+DL SR V EG A +ETSA N E+F
Sbjct: 107 HHDLPVILVGNKSDLARSRE-VSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 115 QAAIIVYDITNQDTFGRAKSWVKE---------LQRMAPPNIDTFGRAKSWVKELQRMAP 165
+ +IVYDI Q G A W+++ L + + +F + + L+ P
Sbjct: 60 EVTLIVYDIWEQ---GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 116
Query: 166 P-NIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIF 217
++ + L GNK+DL SR V EG A +ETSA N E+F
Sbjct: 117 HHDLPVILVGNKSDLARSRE-VSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F + + +VTI+ +WD GQ R+ ++ Y R A + + D +Q+ +K+
Sbjct: 54 TVGFNMRKITKGNVTIK--LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 111
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180
+ L L + I + + GNK DLP
Sbjct: 112 ELHNL--------------------LDKPQLQGIPVLVLGNKRDLP 137
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 91 RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
RF +WD GQE + YY N + I+V D T+++ + +EL +M
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKM 114
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F + + +VTI+ +WD GQ R+ ++ Y R A + + D +Q+ +K+
Sbjct: 63 TVGFNMRKITKGNVTIK--LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 120
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182
EL + L + I + + GNK DLP +
Sbjct: 121 ---ELHNL-----------------LDKPQLQGIPVLVLGNKRDLPGA 148
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 91 RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
RF +WD GQE + YY N + I+V D T+++ + +EL +M
Sbjct: 67 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKM 115
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 91 RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
RF +WD GQE + YY N + I+V D T+++ + +EL +M
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKM 109
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 91 RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
RF +WD GQE + YY N + I+V D T+++ + +EL +M
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKM 109
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 22/108 (20%)
Query: 75 SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ F + V +VTI+ IWD GQ R+ ++ Y R A + + D +++ +++
Sbjct: 54 TVGFNMRKVTKGNVTIK--IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRN 111
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182
+ L L + I + + GNK DLP +
Sbjct: 112 ELHNL--------------------LDKPQLQGIPVLVLGNKRDLPNA 139
>pdb|1IXR|A Chain A, Ruva-Ruvb Complex
pdb|1IXR|B Chain B, Ruva-Ruvb Complex
Length = 191
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 93 EIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKE-LQRM 142
++ A +E LA + ++ AQA +V D+ Q+ RA+ +KE L+R+
Sbjct: 140 KVESEAAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKRL 190
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
++F++WD G YY N A I V D ++D G +KS
Sbjct: 48 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 92
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
++F++WD G YY N A I V D ++D G +KS
Sbjct: 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 91 RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
F +WD GQE + YY N + I+V D +++ K +EL RM
Sbjct: 61 HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITK---EELYRM 109
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++ +WD GQ YY + A I V D T++D A KEL M
Sbjct: 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLMLQE---- 114
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+ELQ A + + NK D P + E S+
Sbjct: 115 --------EELQDAA-----LLVFANKQDQPGALSASEVSK 142
>pdb|1IXS|A Chain A, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 62
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKE-LQRM 142
A +E LA + ++ AQA +V D+ Q+ RA+ +KE L+R+
Sbjct: 16 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKRL 61
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 158 KELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAM-NVNEI 216
KE QR P L GNK D+ R+ V +EG A A G LF E SA +V +
Sbjct: 122 KETQRSIPA----LLLGNKLDMAQYRQ-VTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176
Query: 217 FVEIAKK 223
F E ++
Sbjct: 177 FHEAVRE 183
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN-QDTFGRAKSWVKELQ-RMAPPNIDT 149
+WD AG+E +++ P + + VYD++ Q K W+ ++ R + +
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
G E QR A + + NK P R +Y A E + L
Sbjct: 116 VGTHLDVSDEKQRKACXSKITKELLNKRGFPAIR---DYHFVNATEESDAL 163
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN-QDTFGRAKSWVKELQ-RMAPPNIDT 149
+WD AG+E +++ P + + VYD++ Q K W+ ++ R + +
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200
G E QR A + + NK P R +Y A E + L
Sbjct: 118 VGTHLDVSDEKQRKACXSKITKELLNKRGFPAIR---DYHFVNATEESDAL 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,119,583
Number of Sequences: 62578
Number of extensions: 372469
Number of successful extensions: 1821
Number of sequences better than 100.0: 332
Number of HSP's better than 100.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 579
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)