BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18160
(373 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/193 (60%), Positives = 133/193 (68%), Gaps = 31/193 (16%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46 FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
DTF RAK+WVKEL QR A PNIVIALAGNKADL S+R
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
VE+ E +AYA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E N G G L
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQ 203
Query: 240 ETAEAPKTSNCCN 252
E + A ++ C N
Sbjct: 204 ENSPASRSQCCSN 216
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 279 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/193 (61%), Positives = 132/193 (68%), Gaps = 31/193 (16%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46 FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
DTF RAK+WVKEL QR A PNIVIALAGNKADL S+R
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
VE+ E +AYAE+N LLFMETSAKTAMNVNEIF+ IAKKLPK E N G G L
Sbjct: 144 VEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQ 203
Query: 240 ETAEAPKTSNCCN 252
E A ++ C N
Sbjct: 204 ENNPASRSQCCSN 216
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 279 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/193 (60%), Positives = 133/193 (68%), Gaps = 31/193 (16%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46 FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
DTF RAK+WVKEL QR A PNIVIALAGNKADL S+R
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
VE+ E +AYA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E N G G L
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQ 203
Query: 240 ETAEAPKTSNCCN 252
E+ A ++ C N
Sbjct: 204 ESNPASRSQCCSN 216
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 279 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/192 (60%), Positives = 135/192 (70%), Gaps = 30/192 (15%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46 FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
DTF RAK+WVKEL QR A PNIVIALAGNKADL T +R
Sbjct: 106 TDTFVRAKNWVKEL---------------------QRQASPNIVIALAGNKADLAT-KRA 143
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGG---RRLVETA 242
V++ + + YA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E N GG R+V+
Sbjct: 144 VDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQ 203
Query: 243 EA--PKTSNCCN 252
E+ P S CC+
Sbjct: 204 ESSQPSRSQCCS 215
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 279 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/193 (60%), Positives = 132/193 (68%), Gaps = 31/193 (16%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46 FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
DTF RAK+WVKEL QR A PNIVIALAGNKADL S+R
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
VE+ E +AYA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E N G G L
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQ 203
Query: 240 ETAEAPKTSNCCN 252
E A ++ C N
Sbjct: 204 ENNPASRSQCCSN 216
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 279 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/193 (60%), Positives = 132/193 (68%), Gaps = 31/193 (16%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 46 FHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 105
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
DTF RAK+WVKEL QR A PNIVIALAGNKADL S+R
Sbjct: 106 TDTFARAKNWVKEL---------------------QRQASPNIVIALAGNKADL-ASKRA 143
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG------GRRLV 239
VE+ E +AYA++N LLFMETSAKTAMNVNEIF+ IAKKLPK E N G G L
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQ 203
Query: 240 ETAEAPKTSNCCN 252
E A ++ C N
Sbjct: 204 ENNPASRSQCCSN 216
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 279 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 30/192 (15%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45 FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
Q+TF RAK+WVKE LQR A P+IVIALAGNKADL S+R
Sbjct: 105 QETFARAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ASKRM 142
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE--VNNGQGGR-RLVETA 242
VEY E +AYA++N LLFMETSAKTAMNVN++F+ IAKKLPK E +G GR R V+
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGRSRGVDLH 202
Query: 243 EAPK--TSNCCN 252
E + S CC+
Sbjct: 203 EQTQQNKSQCCS 214
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 45/48 (93%), Gaps = 1/48 (2%)
Query: 286 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN Q+QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 8 RPNGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 30/192 (15%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45 FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
Q+TF RAK+WVKE LQR A P+IVIALAGNKADL ++R
Sbjct: 105 QETFARAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ANKRM 142
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN--GQGGR-RLVETA 242
VEY E +AYA++N LLFMETSAKTAMNVN++F+ IAKKLPK E N G GR R V+
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLH 202
Query: 243 EAPK--TSNCCN 252
E + S CC+
Sbjct: 203 EQSQQNKSQCCS 214
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Query: 286 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 30/192 (15%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45 FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
Q+TF RAK+WVKE LQR A P+IVIALAGNKADL ++R
Sbjct: 105 QETFARAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ANKRM 142
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN--GQGGR-RLVETA 242
VEY E +AYA++N LLFMETSAKTAMNVN++F+ IAKKLPK E N G GR R V+
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLH 202
Query: 243 EAPK--TSNCCN 252
E + S CC+
Sbjct: 203 EQSQQNKSQCCS 214
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Query: 286 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 136/192 (70%), Gaps = 30/192 (15%)
Query: 69 FYPYLFS---AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ Y S AAF+TQ+VCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN
Sbjct: 45 FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 104
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
Q+TF RAK+WVKE LQR A P+IVIALAGNKADL ++R
Sbjct: 105 QETFARAKTWVKE---------------------LQRQASPSIVIALAGNKADL-ANKRM 142
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN--GQGGR-RLVETA 242
VEY E +AYA++N LLFMETSAKTAMNVN++F+ IAKKLPK E N G GR R V+
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLH 202
Query: 243 EAPK--TSNCCN 252
E + S CC+
Sbjct: 203 EQSQQNKSQCCS 214
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Query: 286 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 134/190 (70%), Gaps = 29/190 (15%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 48 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 107
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKEL QR A PNIVIAL+GNKADL ++R V++
Sbjct: 108 FARAKNWVKEL---------------------QRQASPNIVIALSGNKADL-ANKRAVDF 145
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQG-GRRLVETA 242
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK E N+ +G G L E A
Sbjct: 146 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPA 205
Query: 243 EAPKTSNCCN 252
+ P S CC+
Sbjct: 206 Q-PARSQCCS 214
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 286 RPND-QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 133/190 (70%), Gaps = 29/190 (15%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 48 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 107
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKEL QR A PNIVIAL+GNKADL ++R V++
Sbjct: 108 FARAKNWVKEL---------------------QRQASPNIVIALSGNKADL-ANKRAVDF 145
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQG-GRRLVETA 242
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK E N+ +G G L E
Sbjct: 146 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPT 205
Query: 243 EAPKTSNCCN 252
+ P S CC+
Sbjct: 206 Q-PTRSQCCS 214
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 286 RPND-QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 133/190 (70%), Gaps = 29/190 (15%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 48 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 107
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKEL QR A PNIVIAL+GNKADL ++R V++
Sbjct: 108 FARAKNWVKEL---------------------QRQASPNIVIALSGNKADL-ANKRAVDF 145
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQG-GRRLVETA 242
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK E N+ +G G L E
Sbjct: 146 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPT 205
Query: 243 EAPKTSNCCN 252
+ P S CC+
Sbjct: 206 Q-PTRSQCCS 214
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 286 RPND-QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 133/190 (70%), Gaps = 29/190 (15%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 48 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 107
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKEL QR A PNIVIAL+GNKADL ++R V++
Sbjct: 108 FARAKNWVKEL---------------------QRQASPNIVIALSGNKADL-ANKRAVDF 145
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQG-GRRLVETA 242
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK E N+ +G G L E
Sbjct: 146 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSTRGRGVDLTEPT 205
Query: 243 EAPKTSNCCN 252
+ P S CC+
Sbjct: 206 Q-PTRSQCCS 214
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 286 RPND-QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/190 (56%), Positives = 133/190 (70%), Gaps = 29/190 (15%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 48 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 107
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKEL QR A PNIVIAL+GNKADL ++R V++
Sbjct: 108 FARAKNWVKEL---------------------QRQASPNIVIALSGNKADL-ANKRAVDF 145
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQG-GRRLVETA 242
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK E N+ +G G L E
Sbjct: 146 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPT 205
Query: 243 EAPKTSNCCN 252
+ P + CC+
Sbjct: 206 Q-PTRNQCCS 214
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 286 RPND-QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 133/190 (70%), Gaps = 29/190 (15%)
Query: 69 FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128
F AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+++
Sbjct: 48 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 107
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188
F RAK+WVKEL QR A PNIVIAL+GNKADL ++R V++
Sbjct: 108 FARAKNWVKEL---------------------QRQASPNIVIALSGNKADL-ANKRAVDF 145
Query: 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQG-GRRLVETA 242
E ++YA++N LLFMETSAKT+MNVNEIF+ IAKKLPK E +N +G G L E
Sbjct: 146 QEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGINCTRGRGVDLTEPT 205
Query: 243 EAPKTSNCCN 252
+ P S CC+
Sbjct: 206 Q-PTRSQCCS 214
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 286 RPND-QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 201 bits (510), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 104/180 (57%), Positives = 120/180 (66%), Gaps = 25/180 (13%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+ QTVCL+D T++FEIWDTAGQERYHTLAPMYYR AQAAI+VYDI ++D+F RA W
Sbjct: 44 AAFLAQTVCLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKW 103
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
VKE LQR PNIVIALAGNK DL R+ VE +E + YA
Sbjct: 104 VKE---------------------LQRQGSPNIVIALAGNKLDLAAKRK-VETAEAQQYA 141
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRL---VETAEAPKTSNCCN 252
EENGLLFMETSAKT+ NVNE+FVEIAKKLPK GR ++ K + CCN
Sbjct: 142 EENGLLFMETSAKTSQNVNELFVEIAKKLPKTPTTRPGSGRVAIAPIDNGNTGKKNKCCN 201
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KI Q+KLVLLGE+AVGKSSLVLRFVRG F +YQESTIG
Sbjct: 6 KIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGA 44
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/208 (48%), Positives = 126/208 (60%), Gaps = 29/208 (13%)
Query: 51 IWLKDRVDCMTQIVINVV------FYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYH 104
+ L D + +VI V F AAF + T+ +++ T++FEIWDTAGQERYH
Sbjct: 14 VLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYH 73
Query: 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMA 164
+LAPMYYR A AAIIVYDIT+ D+F RAK WV+ELQ+
Sbjct: 74 SLAPMYYRGAAAAIIVYDITSSDSFARAKK---------------------WVQELQKQG 112
Query: 165 PPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
PN+V+ALAGNKADL RR V E YAEENGL FMETSAKTA+NVN IF EIAK+L
Sbjct: 113 NPNMVMALAGNKADLE-DRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRL 171
Query: 225 PKKEVNNGQGGRRLVE-TAEAPKTSNCC 251
P+ + G LV+ AE + ++CC
Sbjct: 172 PRAQPAQNPAGMVLVDRAAEGTRATSCC 199
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSS 337
KLVLLG+ GKSSLV+RFV+GQF E+QESTIG SS
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSS 50
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 132/221 (59%), Gaps = 30/221 (13%)
Query: 39 MSGKRQSDCMAQ-IWLKDRVDCMTQIVINVV------FYPYLFSAAFITQTVCLDDVTIR 91
M+ +R ++ A+ + L D + +VI V F AAF + TV +++ T++
Sbjct: 1 MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVK 60
Query: 92 FEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFG 151
FEIWDTAGQERYH+LAPMYYR A AAIIVYDIT+ ++
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITS---------------------TESLA 99
Query: 152 RAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAM 211
RAK WV+ELQ+ PN+V+ALAGNKADL R+ V E YAEENGL FMETSAKTA
Sbjct: 100 RAKKWVQELQKQGNPNMVMALAGNKADLEDKRK-VTAEEARLYAEENGLFFMETSAKTAT 158
Query: 212 NVNEIFVEIAKKLPKKEVNNGQGGRRLVET-AEAPKTSNCC 251
NVN+IF EIAK+LP+ + G L + A+ + ++CC
Sbjct: 159 NVNDIFYEIAKRLPRAQPAQNPAGMVLEDKPAQGSQAASCC 199
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSS 337
KLVLLG+ GKSSLV+RFV+GQF E+QESTIG SS
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSS 50
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 121/186 (65%), Gaps = 23/186 (12%)
Query: 67 VVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ 126
V F AAF +QT+ ++D T++FEIWDTAGQERYH+LAPMYYR A AAIIV+D+TNQ
Sbjct: 36 VEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ 95
Query: 127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186
+F RAK WV+ELQ A N PN+V+ALAGNK+DL +R+ V
Sbjct: 96 ASFERAKKWVQELQ--AQGN-------------------PNMVMALAGNKSDLLDARK-V 133
Query: 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETA-EAP 245
+ + YA+ENGL FMETSAKTA NV EIF EIA++LP+ + G L + A +
Sbjct: 134 TAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENPTGMVLPDRAMDRA 193
Query: 246 KTSNCC 251
+S+CC
Sbjct: 194 VSSSCC 199
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KLVLLG+ GKSSLVLRFV+ QF E+QESTIG
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 45
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 114/185 (61%), Gaps = 22/185 (11%)
Query: 67 VVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ 126
V F AAF +QT+ ++D T++FEIWDTAGQERYH+LAPMYYR A AAIIV+DITNQ
Sbjct: 36 VEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQ 95
Query: 127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186
+F RAK W V+ELQ PN+V+ALAGNKADL +R+ V
Sbjct: 96 ASFERAKKW---------------------VQELQAQGNPNMVMALAGNKADLLDARK-V 133
Query: 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPK 246
E E YA+EN L FMETSAKTA NV +IF EIAK+LP+ + G L A
Sbjct: 134 SAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENPTGMVLPNGPGATA 193
Query: 247 TSNCC 251
S+ C
Sbjct: 194 VSSSC 198
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KLVLLG+ GKSSLVLRFV+ QF E+QESTIG
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 45
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 115/183 (62%), Gaps = 27/183 (14%)
Query: 76 AAFITQTVCLDDVT-IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
AAF+TQT+ +D+ T ++ EIWDTAGQERY +LAPMYYRNA AI+VYDIT + +AKS
Sbjct: 49 AAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKS 108
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
W+ KELQR AP IVIALAGNK DL RR VE ++ EAY
Sbjct: 109 WI---------------------KELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAY 147
Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLP-KKEVNNGQG----GRRLVETAEAPKTSN 249
A E LLF ETSAKTA NVNE+F IAKKLP + ++N +G G L E A + S
Sbjct: 148 AAEANLLFFETSAKTAENVNELFTAIAKKLPLEDKLNQARGAVNRGVNLSEARPAAQPSG 207
Query: 250 CCN 252
C+
Sbjct: 208 SCS 210
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
KLVLLG+SAVGKSSLVLRFV+ QF +Y+ESTIG
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGA 49
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 32/181 (17%)
Query: 47 CMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHT 105
C+ +++ + D +++ + A+F++QT+ L D T++FEIWDTAGQERY
Sbjct: 48 CIVLRFVRGQFDATSKVTVG---------ASFLSQTIALQDSTTVKFEIWDTAGQERYSA 98
Query: 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165
LAP+YYR A A+IVYDIT+ ++F +A+ WVK ELQ+
Sbjct: 99 LAPLYYRGAGVAVIVYDITSPESFKKAQYWVK---------------------ELQKHGS 137
Query: 166 PNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225
P+IV+AL GNKADL +R V +G AE+NG+ F+ETSAKTA N+N++F EI K+LP
Sbjct: 138 PDIVMALVGNKADL-HEKREVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLP 196
Query: 226 K 226
+
Sbjct: 197 R 197
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
AK + KLVLLG+S VGKS +VLRFVRGQF + T+G
Sbjct: 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVG 67
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 23/154 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQ V +++ T++FEIWDTAGQER+ +LAPMYYRNAQAA++VYD+T +F +A+ W
Sbjct: 42 AAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHW 101
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL--PTSRRCVEYSEGEA 193
VKEL A +I+IAL GNK D+ R V EGE
Sbjct: 102 ---------------------VKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEK 140
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
AEE GLLF ETSAKT NVN++F+ I +K+P K
Sbjct: 141 LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 174
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
+ KLVLLGE+AVGKSS+VLRFV F E +E TIG
Sbjct: 5 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA 42
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 144 bits (364), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 109/178 (61%), Gaps = 25/178 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A+F+T+TV + +F IWDTAGQER+ LAPMYYR + AAIIVYDIT ++TF K+W
Sbjct: 40 ASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
VKE L++ PPNIV+A+AGNK DL R +E + + YA
Sbjct: 100 VKE---------------------LRQHGPPNIVVAIAGNKCDLIDVREVME-RDAKDYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGR--RLVETAEAPKTSNCC 251
+ +F+ETSAK A+N+NE+F+EI++++P + N GG+ +L PK S CC
Sbjct: 138 DSIHAIFVETSAKNAININELFIEISRRIPSTDANLPSGGKGFKLRRQPSEPKRS-CC 194
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
+ K+ LLG++ VGKSS+V RFV F TIG
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGA 40
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 109/178 (61%), Gaps = 25/178 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A+F+T+TV + +F IWDTAGQER+ LAPMYYR + AAIIVYDIT ++TF K+W
Sbjct: 40 ASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
V +EL++ PP+IV+A+AGNK DL R +E + + YA
Sbjct: 100 V---------------------RELRQHGPPSIVVAIAGNKCDLTDVREVME-RDAKDYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGR--RLVETAEAPKTSNCC 251
+ +F+ETSAK A+N+NE+F+EI++++P + N GG+ +L PK S CC
Sbjct: 138 DSIHAIFVETSAKNAININELFIEISRRIPSTDANPASGGKGFKLRRQPSEPKRS-CC 194
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
+ K+ LLG++ VGKSS+V RFV F TIG
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGA 40
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 108/178 (60%), Gaps = 25/178 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A+F+T+TV + +F IWDTAGQE + LAPMYYR + AAIIVYDIT ++TF K+W
Sbjct: 40 ASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
VKE L++ PPNIV+A+AGNK DL R +E + + YA
Sbjct: 100 VKE---------------------LRQHGPPNIVVAIAGNKCDLIDVREVME-RDAKDYA 137
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGR--RLVETAEAPKTSNCC 251
+ +F+ETSAK A+N+NE+F+EI++++P + N GG+ +L P+ S CC
Sbjct: 138 DSIHAIFVETSAKNAININELFIEISRRIPSADANPPSGGKGFKLRRQPSEPQRS-CC 194
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
+ K+ LLG++ VGKSS+V RFV F TIG
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGA 40
>sp|Q54RX9|RAB5B_DICDI Putative ras-related protein Rab-5B OS=Dictyostelium discoideum
GN=rab5B PE=5 SV=1
Length = 214
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 99/169 (58%), Gaps = 26/169 (15%)
Query: 59 CMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116
C++ ++ F P AAF+ +++ +D++ I+ EIWDTAGQERY +L PMYYR A A
Sbjct: 64 CISSRLVRNEFGPTDSTIGAAFLVKSMVVDNINIKLEIWDTAGQERYRSLTPMYYRGAAA 123
Query: 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK 176
A++VYDIT ++TF K WV E LQ+ A PN+++ALAGNK
Sbjct: 124 AVVVYDITKKNTFETLKRWVSE---------------------LQKHASPNLILALAGNK 162
Query: 177 ADLPTSRRCVEYSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKL 224
DLP R V+ E Y E G +F ETSA + N+NE+F EI ++L
Sbjct: 163 VDLPN--REVQVDEVNRYISELGNAIFFETSAASGQNINELFTEICRRL 209
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 102/179 (56%), Gaps = 23/179 (12%)
Query: 74 FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
A+F+T+TV + +F IWDTAGQER+H+LAPMYYR + AA+IVYDIT QD+F K
Sbjct: 38 IGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK 97
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
WV KEL+ P NIV+A+AGNK DL R V + +
Sbjct: 98 KWV---------------------KELKEHGPENIVMAIAGNKCDLSDIRE-VPLKDAKE 135
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN-NGQGGRRLVETAEAPKTSNCC 251
YAE G + +ETSAK A+N+ E+F I++++P + + NG G VE + CC
Sbjct: 136 YAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHENGNNGTIKVEKPTMQASRRCC 194
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
I + K+ LLG++ VGKSS+V RFV+ F TIG
Sbjct: 3 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA 40
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 97/167 (58%), Gaps = 24/167 (14%)
Query: 74 FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
A+F+T+TV + +F IWDTAGQER+H+LAPMYYR + AA+IVYDIT QD+F K
Sbjct: 38 IGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLK 97
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
WV KEL+ P NIV+A+AGNK DL R V + +
Sbjct: 98 KWV---------------------KELKEHGPENIVMAIAGNKCDLSDIRE-VPLKDAKE 135
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLP--KKEVNNGQGGRRL 238
YAE G L +ETSAK A+N+ E+F I++++P N GG +L
Sbjct: 136 YAESIGALVVETSAKNAINIEELFQGISRQIPPLDPHENGNSGGIKL 182
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
I + K+ LLG++ VGKSS+V RFV+ F TIG
Sbjct: 3 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 39
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 24/167 (14%)
Query: 74 FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
A+F+T+TV + +F IWDTAGQER+H+LAPMYYR + AA+IVYDIT QD+F K
Sbjct: 38 IGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLK 97
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
WV KEL+ P NIV+A+AGNK DL R V + +
Sbjct: 98 KWV---------------------KELKEHGPENIVMAIAGNKCDLSDIRE-VPLKDAKE 135
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK--KEVNNGQGGRRL 238
YAE G + +ETSAK A+N+ E+F I++++P + N GG +L
Sbjct: 136 YAESIGAIVVETSAKNAINIEELFQGISRQIPPLGPQENGNSGGIKL 182
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
I + K+ LLG++ VGKSS+V RFV+ F TIG
Sbjct: 3 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 39
>sp|P36018|YPT52_YEAST GTP-binding protein YPT52 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT52 PE=1 SV=1
Length = 234
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 110/218 (50%), Gaps = 62/218 (28%)
Query: 76 AAFITQTVCL--------DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
AAF++Q++ + DV I+FEIWDTAGQERY +LAPMYYRNA AA++VYDIT +D
Sbjct: 38 AAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQED 97
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-------- 179
+ +A++WV EL+ ++ ++VI L GNK DL
Sbjct: 98 SLQKARNWVDELKN--------------------KVGDDDLVIYLLGNKVDLCQETPSTE 137
Query: 180 --PTSR---------RCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKK---LP 225
P S R + E + YA+E GLLF E SAKT V EIF +I +K L
Sbjct: 138 TSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQDIGEKLYDLK 197
Query: 226 KKEV-----------NNGQGGRRLVETAEAPKTSNCCN 252
K E+ NNGQ L + TS CC+
Sbjct: 198 KDEILSKQNRQIGGGNNGQVDINLQRPSTNDPTS-CCS 234
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNV 354
+ Q+KLVLLG+S+VGKSS+V RFV+ F E +ESTIG S SI+ P +V
Sbjct: 1 MLQFKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAF-LSQSITI-HPNDGNETKDV 58
Query: 355 PITF-VW 360
I F +W
Sbjct: 59 VIKFEIW 65
>sp|Q9H0T7|RAB17_HUMAN Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2
Length = 212
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 24/178 (13%)
Query: 77 AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
AF T+ V + +++ EIWDTAGQE+YH++ +Y+R A AA++VYDIT +D+F +A+ W+
Sbjct: 54 AFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWL 113
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
K+L+ + + P +++ L GNK DL R V + EG+ +A+
Sbjct: 114 KDLE--------------------EELHPGEVLVMLVGNKTDLSQERE-VTFQEGKEFAD 152
Query: 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG--GRRLVETAEAP-KTSNCC 251
LLFMETSAK V+E+F +A++L ++ GQ G V + P + + CC
Sbjct: 153 SQKLLFMETSAKLNHQVSEVFNTVAQELLQRSDEEGQALRGDAAVALNKGPARQAKCC 210
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQF 322
+KLVLLG +VGKSSL LR+V+ F
Sbjct: 20 FKLVLLGSGSVGKSSLALRYVKNDF 44
>sp|P35292|RAB17_MOUSE Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=1 SV=1
Length = 214
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 26/180 (14%)
Query: 77 AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
AF T+ + L +++ EIWDTAGQE+Y ++ +Y+R A AA++VYDIT +D+F +A+ W+
Sbjct: 54 AFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWL 113
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
++L+ KE Q P +V+ L GNK DL R V + EG+ +AE
Sbjct: 114 EDLE-----------------KEFQ---PGEVVVMLVGNKTDLGEERE-VTFQEGKEFAE 152
Query: 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNG----QGGRRLVETAEAP-KTSNCC 251
LLFMETSAK V+EIF +A++L ++ + G Q G + E P + CC
Sbjct: 153 SKSLLFMETSAKLNYQVSEIFNTVAQELLQRAGDTGSSRPQEGEAVALNQEPPIRQRQCC 212
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQF 322
KLVLLG S+VGK+SL LR+++ F
Sbjct: 21 KLVLLGSSSVGKTSLALRYMKQDF 44
>sp|P36409|RAB2A_DICDI Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A
PE=2 SV=2
Length = 207
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 101/187 (54%), Gaps = 35/187 (18%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D+ I+ +IWDTAGQE + ++ YYR + A++VYDIT +DTF W+K
Sbjct: 42 FGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLK 101
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ A+S+ A N+ I L GNK+D+ S+R V Y EG +A+E
Sbjct: 102 D--------------ARSY-------ANSNMTIILIGNKSDME-SKRAVSYEEGRQFADE 139
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRLVE-------TAEA 244
NGL+F+ETSAKTA NV E FV A K+ +K ++NN G +L T +
Sbjct: 140 NGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKLGAPTSKQDGTDQK 199
Query: 245 PKTSNCC 251
P CC
Sbjct: 200 PAGGGCC 206
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 6 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 41
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 99/181 (54%), Gaps = 29/181 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV LD I+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F K W+
Sbjct: 45 FKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLN 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ R A N++ L GNK+DL TS++ VEYS +A+A+E
Sbjct: 105 EIDRYASENVNKL---------------------LVGNKSDL-TSKKVVEYSVAKAFADE 142
Query: 198 NGLLFMETSAKTAMNVNEIFV----EIAKKLPKKEVNNGQGGRRLVETAEAP---KTSNC 250
G+ F+ETSAK A NV + F+ EI ++ + + GG + P K+S+C
Sbjct: 143 IGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSC 202
Query: 251 C 251
C
Sbjct: 203 C 203
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 42
>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4
PE=3 SV=1
Length = 213
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 41/193 (21%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT ++TF S
Sbjct: 43 FGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS--- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
W+++ ++ A PN+ I L GNK DL T RR V EGE +A+E
Sbjct: 100 ------------------WLEDARQHANPNMTIMLIGNKCDL-THRRAVTTEEGEQFAKE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNN-----------GQGGRRLVE 240
+GL+F+ETSA+TA NV E F+ AK++ KK +V+N G G + V+
Sbjct: 141 HGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVK 200
Query: 241 TAE--APKTSNCC 251
E A K+S+CC
Sbjct: 201 PGEGGAAKSSSCC 213
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 45/201 (22%)
Query: 74 FSAAFIT--------QTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125
F+ +FIT +T+ LD I+ +IWDTAGQER+ T+ YYR A ++VYD+T+
Sbjct: 40 FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99
Query: 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185
+ +F ++W++ +++ A +++ L GNKAD+ S+R
Sbjct: 100 ESSFNNIRNWIRNIEQHASDSVNKI---------------------LVGNKADMDESKRA 138
Query: 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK-------------EVNNG 232
V S+G+A A+E G+ F ETSAKT +NV E+F IAK + ++ ++N
Sbjct: 139 VPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQS 198
Query: 233 QGGRRLVETAEAPKTSNCCNT 253
G T++A + S CC T
Sbjct: 199 DQG---AGTSQATQKSACCGT 216
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
KL+L+G+S VGKS L+LRF G F +TIG
Sbjct: 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG 49
>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1
Length = 212
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 28/181 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRLVETAEAPKTSNCC 251
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++ A S+
Sbjct: 141 HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGS 200
Query: 252 N 252
N
Sbjct: 201 N 201
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 26/163 (15%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+T+ + D I+FEIWDTAGQER+ LAPMYYRNAQAA++V+D+TN+ +F +A++W
Sbjct: 47 AAFLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNW 106
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----PTSRRCVEYSE 190
V+EL + G +IVIAL GNK DL R ++
Sbjct: 107 VEELH-------EKVGH--------------DIVIALVGNKMDLLNNDDENENRAMKAPA 145
Query: 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
+ E LL+ E SAKT N+ +IF + +K+P E N Q
Sbjct: 146 VQNLCERENLLYFEASAKTGENIYQIFQTLGEKVPCPEQNTRQ 188
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
K+VLLGESAVGKSS+VLRFV F E +E TIG
Sbjct: 14 KVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGA 47
>sp|Q8WUD1|RAB2B_HUMAN Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1
Length = 216
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 90/150 (60%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + V +D I+ +IWDTAGQE + ++ YYR A A++VYDIT ++T
Sbjct: 43 FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET--------- 93
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
F SW+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 94 ------------FNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-SRRDVKREEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+GL+FMETSAKTA NV E F+ AK++ +K
Sbjct: 141 HGLIFMETSAKTACNVEEAFINTAKEIYRK 170
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|P05712|RAB2A_RAT Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=1 SV=1
Length = 212
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRL 238
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++
Sbjct: 141 HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + T+G E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVE 42
>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2
SV=1
Length = 212
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRL 238
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++
Sbjct: 141 HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|Q90965|RAB2A_CHICK Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1
Length = 212
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRL 238
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++
Sbjct: 141 HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|Q5R6B6|RAB2A_PONAB Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1
Length = 212
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRL 238
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++
Sbjct: 141 HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|Q4R4X6|RAB2A_MACFA Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2
SV=1
Length = 212
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRL 238
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++
Sbjct: 141 HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1
Length = 212
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRL 238
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++
Sbjct: 141 HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|P61105|RAB2A_CANFA Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1
Length = 212
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-SRREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRL 238
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++
Sbjct: 141 HGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1
Length = 213
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 41/193 (21%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT ++TF S
Sbjct: 43 FGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS--- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
W+++ ++ A PN+ I L GNK DL T RR V EGE +A+E
Sbjct: 100 ------------------WLEDARQHANPNMTIMLIGNKCDL-THRRAVTTEEGEQFAKE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNN-----------GQGGRRLVE 240
+GL+F+ETSA+TA NV E F+ AK++ KK +V+N G G + +
Sbjct: 141 HGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAK 200
Query: 241 TAE--APKTSNCC 251
E A K+S+CC
Sbjct: 201 PGEGDARKSSSCC 213
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1
Length = 212
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D I+ +IWDTAGQE + ++ YYR A A++VYDIT +D
Sbjct: 43 FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD---------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
TF +W+++ ++ + N+VI L GNK+DL +RR V+ EGEA+A E
Sbjct: 93 -----------TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE-ARREVKKEEGEAFARE 140
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK------EVNNGQGGRRL 238
+GL+FMETSAKTA NV E F+ AK++ +K ++NN G ++
Sbjct: 141 HGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKI 187
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+K +++G++ VGKS L+L+F +F + TIG E
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 42
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,138,359
Number of Sequences: 539616
Number of extensions: 5251228
Number of successful extensions: 18078
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 15230
Number of HSP's gapped (non-prelim): 1847
length of query: 373
length of database: 191,569,459
effective HSP length: 119
effective length of query: 254
effective length of database: 127,355,155
effective search space: 32348209370
effective search space used: 32348209370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)