Query psy18160
Match_columns 373
No_of_seqs 404 out of 3442
Neff 8.3
Searched_HMMs 46136
Date Sat Aug 17 00:07:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.1E-39 2.4E-44 278.6 19.5 164 47-232 9-179 (205)
2 KOG0092|consensus 100.0 1.4E-38 3.1E-43 270.8 19.9 165 46-232 4-174 (200)
3 KOG0078|consensus 100.0 2.8E-37 6E-42 267.7 20.0 166 43-230 8-179 (207)
4 KOG0094|consensus 100.0 1.1E-36 2.4E-41 259.2 19.6 163 46-229 21-189 (221)
5 KOG0394|consensus 100.0 3.7E-36 7.9E-41 253.5 17.9 174 39-229 1-182 (210)
6 KOG0098|consensus 100.0 5.5E-36 1.2E-40 252.9 16.1 161 47-229 6-172 (216)
7 KOG0080|consensus 100.0 2.7E-34 5.8E-39 236.7 17.4 162 46-228 10-177 (209)
8 KOG0079|consensus 100.0 6.6E-35 1.4E-39 237.1 13.2 158 48-228 9-172 (198)
9 KOG0091|consensus 100.0 2.9E-34 6.2E-39 237.1 13.8 164 47-230 8-178 (213)
10 KOG0087|consensus 100.0 3.1E-33 6.7E-38 241.3 17.2 163 44-228 10-179 (222)
11 cd04120 Rab12 Rab12 subfamily. 100.0 1.5E-32 3.4E-37 245.6 22.1 157 49-227 2-165 (202)
12 KOG0093|consensus 100.0 2.6E-33 5.6E-38 227.6 15.0 163 45-229 18-187 (193)
13 KOG0086|consensus 100.0 1.7E-33 3.7E-38 230.0 13.8 161 48-230 10-176 (214)
14 KOG0088|consensus 100.0 1.9E-33 4.2E-38 231.0 12.2 160 46-227 12-177 (218)
15 cd04121 Rab40 Rab40 subfamily. 100.0 8.3E-32 1.8E-36 238.6 22.0 161 46-229 5-171 (189)
16 KOG0095|consensus 100.0 9.6E-33 2.1E-37 224.8 14.1 162 44-227 3-171 (213)
17 KOG0083|consensus 100.0 3.5E-33 7.6E-38 223.3 6.3 156 52-229 2-164 (192)
18 KOG0097|consensus 100.0 3.4E-31 7.3E-36 214.0 16.4 160 47-228 11-176 (215)
19 cd04133 Rop_like Rop subfamily 100.0 1.1E-30 2.4E-35 228.9 20.1 155 48-225 2-173 (176)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-30 3.2E-35 229.3 19.8 157 46-225 4-180 (182)
21 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.1E-30 1.3E-34 229.0 20.9 163 48-228 1-171 (201)
22 cd01875 RhoG RhoG subfamily. 100.0 7.7E-30 1.7E-34 226.6 20.8 157 47-226 3-178 (191)
23 cd04131 Rnd Rnd subfamily. Th 100.0 5.5E-30 1.2E-34 225.0 19.6 155 48-225 2-176 (178)
24 cd04126 Rab20 Rab20 subfamily. 100.0 6.1E-30 1.3E-34 231.5 20.3 179 48-251 1-220 (220)
25 cd04122 Rab14 Rab14 subfamily. 100.0 1.1E-29 2.4E-34 220.1 20.3 156 48-225 3-164 (166)
26 cd04125 RabA_like RabA-like su 100.0 1.7E-29 3.8E-34 223.5 22.0 181 48-253 1-187 (188)
27 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.9E-30 2.1E-34 231.6 20.6 161 46-229 12-192 (232)
28 cd04110 Rab35 Rab35 subfamily. 100.0 2E-29 4.4E-34 225.3 22.3 183 46-251 5-199 (199)
29 cd04112 Rab26 Rab26 subfamily. 100.0 1.8E-29 3.8E-34 224.2 21.1 182 48-251 1-191 (191)
30 KOG0081|consensus 100.0 1.8E-31 4E-36 219.5 7.2 163 47-230 9-186 (219)
31 PLN03110 Rab GTPase; Provision 100.0 5.8E-29 1.3E-33 225.2 23.0 160 46-227 11-176 (216)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.4E-29 5.3E-34 219.7 19.8 160 48-229 3-168 (172)
33 cd04144 Ras2 Ras2 subfamily. 100.0 3.4E-29 7.3E-34 222.2 19.9 182 49-251 1-188 (190)
34 cd04117 Rab15 Rab15 subfamily. 100.0 5.6E-29 1.2E-33 214.9 20.4 153 49-223 2-160 (161)
35 PF00071 Ras: Ras family; Int 100.0 8E-29 1.7E-33 213.3 19.0 155 49-225 1-161 (162)
36 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8.5E-29 1.8E-33 218.3 19.4 157 48-226 1-167 (182)
37 cd01865 Rab3 Rab3 subfamily. 100.0 1.7E-28 3.7E-33 212.5 20.4 156 48-225 2-163 (165)
38 cd01867 Rab8_Rab10_Rab13_like 100.0 1.8E-28 3.8E-33 212.8 20.2 158 47-226 3-166 (167)
39 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.7E-28 3.6E-33 215.0 20.2 154 48-224 2-174 (175)
40 cd04109 Rab28 Rab28 subfamily. 100.0 2.7E-28 6E-33 220.7 21.6 161 48-227 1-168 (215)
41 cd04127 Rab27A Rab27a subfamil 100.0 1.9E-28 4E-33 214.9 19.6 160 46-226 3-178 (180)
42 cd04118 Rab24 Rab24 subfamily. 100.0 5.2E-28 1.1E-32 214.8 22.6 159 48-228 1-169 (193)
43 cd04111 Rab39 Rab39 subfamily. 100.0 5.2E-28 1.1E-32 218.2 22.1 161 48-229 3-170 (211)
44 PTZ00369 Ras-like protein; Pro 100.0 3.4E-28 7.3E-33 215.6 20.3 161 47-229 5-171 (189)
45 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.5E-28 1.2E-32 209.1 20.0 156 48-225 3-164 (166)
46 PLN03071 GTP-binding nuclear p 100.0 5.3E-28 1.1E-32 219.4 20.3 158 45-227 11-174 (219)
47 cd04134 Rho3 Rho3 subfamily. 100.0 6.9E-28 1.5E-32 213.7 20.3 155 49-226 2-175 (189)
48 cd04136 Rap_like Rap-like subf 100.0 7.1E-28 1.5E-32 207.3 19.8 155 48-224 2-162 (163)
49 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.1E-27 2.3E-32 217.1 21.1 157 48-227 2-178 (222)
50 cd04119 RJL RJL (RabJ-Like) su 100.0 9.3E-28 2E-32 207.1 19.6 161 48-225 1-167 (168)
51 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.2E-27 2.6E-32 208.6 20.3 157 49-225 2-165 (170)
52 cd04175 Rap1 Rap1 subgroup. T 100.0 1.3E-27 2.9E-32 206.3 19.5 156 48-225 2-163 (164)
53 cd01871 Rac1_like Rac1-like su 100.0 2E-27 4.3E-32 208.0 20.2 153 48-223 2-173 (174)
54 cd01873 RhoBTB RhoBTB subfamil 100.0 1.6E-27 3.5E-32 212.3 19.7 153 47-223 2-194 (195)
55 cd04132 Rho4_like Rho4-like su 100.0 1.8E-27 3.9E-32 210.2 19.7 160 48-230 1-172 (187)
56 smart00176 RAN Ran (Ras-relate 100.0 1.3E-27 2.8E-32 213.5 18.9 147 56-227 7-156 (200)
57 cd04106 Rab23_lke Rab23-like s 100.0 1.7E-27 3.7E-32 204.9 19.0 153 48-223 1-161 (162)
58 cd04176 Rap2 Rap2 subgroup. T 100.0 2.6E-27 5.7E-32 204.2 19.9 155 48-224 2-162 (163)
59 cd04116 Rab9 Rab9 subfamily. 100.0 3.7E-27 8.1E-32 204.8 20.7 160 46-224 4-170 (170)
60 cd01868 Rab11_like Rab11-like. 100.0 3.3E-27 7.1E-32 204.0 20.2 156 47-224 3-164 (165)
61 cd04113 Rab4 Rab4 subfamily. 100.0 3.8E-27 8.3E-32 202.7 19.9 155 48-224 1-161 (161)
62 cd01866 Rab2 Rab2 subfamily. 100.0 5.1E-27 1.1E-31 203.9 20.4 157 47-225 4-166 (168)
63 cd04103 Centaurin_gamma Centau 100.0 3.8E-27 8.2E-32 203.0 18.7 151 48-224 1-158 (158)
64 cd00877 Ran Ran (Ras-related n 100.0 5.9E-27 1.3E-31 203.4 20.0 154 48-226 1-160 (166)
65 cd01864 Rab19 Rab19 subfamily. 100.0 6.2E-27 1.3E-31 202.5 20.1 156 47-224 3-165 (165)
66 PLN03108 Rab family protein; P 100.0 6.5E-27 1.4E-31 210.9 20.8 159 47-227 6-170 (210)
67 PLN03118 Rab family protein; P 100.0 2.4E-26 5.1E-31 207.4 23.2 162 46-228 13-180 (211)
68 cd04124 RabL2 RabL2 subfamily. 100.0 9.2E-27 2E-31 200.9 19.7 153 48-226 1-159 (161)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1E-26 2.2E-31 199.4 19.8 154 48-224 2-161 (162)
70 cd04115 Rab33B_Rab33A Rab33B/R 100.0 9.7E-27 2.1E-31 202.5 19.9 157 47-224 2-168 (170)
71 cd04140 ARHI_like ARHI subfami 99.9 1.8E-26 3.8E-31 199.8 19.9 155 48-222 2-162 (165)
72 smart00173 RAS Ras subfamily o 99.9 1.5E-26 3.2E-31 199.6 19.1 155 49-225 2-162 (164)
73 smart00174 RHO Rho (Ras homolo 99.9 1.5E-26 3.2E-31 201.6 19.2 153 50-225 1-172 (174)
74 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3.5E-26 7.6E-31 196.9 20.0 156 47-224 2-163 (164)
75 cd04142 RRP22 RRP22 subfamily. 99.9 3.1E-26 6.7E-31 204.6 19.7 164 48-230 1-179 (198)
76 smart00175 RAB Rab subfamily o 99.9 4.6E-26 1E-30 196.0 19.8 156 48-225 1-162 (164)
77 cd04130 Wrch_1 Wrch-1 subfamil 99.9 4.5E-26 9.8E-31 198.9 19.7 153 48-222 1-171 (173)
78 KOG0395|consensus 99.9 2.3E-26 4.9E-31 204.3 17.7 161 47-229 3-169 (196)
79 cd01860 Rab5_related Rab5-rela 99.9 8.4E-26 1.8E-30 194.5 20.4 155 48-224 2-162 (163)
80 cd04101 RabL4 RabL4 (Rab-like4 99.9 6.5E-26 1.4E-30 195.5 19.2 154 48-224 1-163 (164)
81 cd01861 Rab6 Rab6 subfamily. 99.9 1.1E-25 2.4E-30 193.3 20.2 153 49-223 2-160 (161)
82 cd04143 Rhes_like Rhes_like su 99.9 6.3E-26 1.4E-30 209.1 18.9 164 48-225 1-171 (247)
83 cd01892 Miro2 Miro2 subfamily. 99.9 9.7E-26 2.1E-30 196.3 18.0 156 46-225 3-166 (169)
84 cd01863 Rab18 Rab18 subfamily. 99.9 4E-25 8.7E-30 190.0 20.5 154 48-223 1-160 (161)
85 cd04135 Tc10 TC10 subfamily. 99.9 4E-25 8.6E-30 192.6 20.0 154 48-224 1-173 (174)
86 cd04177 RSR1 RSR1 subgroup. R 99.9 4.2E-25 9.2E-30 191.7 19.9 156 48-225 2-164 (168)
87 cd04146 RERG_RasL11_like RERG/ 99.9 2.1E-25 4.5E-30 192.9 17.2 156 49-225 1-164 (165)
88 cd04123 Rab21 Rab21 subfamily. 99.9 6.6E-25 1.4E-29 188.1 20.1 155 48-224 1-161 (162)
89 cd04148 RGK RGK subfamily. Th 99.9 4.1E-25 9E-30 200.7 19.4 157 48-227 1-165 (221)
90 cd01862 Rab7 Rab7 subfamily. 99.9 8E-25 1.7E-29 189.9 20.4 162 48-227 1-169 (172)
91 KOG4252|consensus 99.9 1.8E-27 3.9E-32 199.7 2.2 164 44-230 17-186 (246)
92 cd04129 Rho2 Rho2 subfamily. 99.9 2.4E-24 5.1E-29 190.6 20.3 156 48-226 2-174 (187)
93 KOG0393|consensus 99.9 2.2E-25 4.7E-30 194.4 13.2 158 46-226 3-180 (198)
94 cd04114 Rab30 Rab30 subfamily. 99.9 5.1E-24 1.1E-28 184.6 21.4 157 46-224 6-168 (169)
95 PRK03003 GTP-binding protein D 99.9 3.5E-25 7.6E-30 222.5 15.9 214 47-363 38-268 (472)
96 cd01870 RhoA_like RhoA-like su 99.9 3E-24 6.5E-29 187.2 19.8 154 48-224 2-174 (175)
97 PTZ00099 rab6; Provisional 99.9 1.9E-24 4.1E-29 189.4 18.2 133 73-227 12-144 (176)
98 cd04149 Arf6 Arf6 subfamily. 99.9 1.1E-24 2.4E-29 189.6 14.7 149 47-222 9-167 (168)
99 PLN00223 ADP-ribosylation fact 99.9 2.1E-24 4.6E-29 190.1 16.2 153 47-226 17-179 (181)
100 cd04139 RalA_RalB RalA/RalB su 99.9 7.6E-24 1.7E-28 182.0 19.2 155 49-225 2-162 (164)
101 cd04158 ARD1 ARD1 subfamily. 99.9 3.6E-24 7.8E-29 186.3 16.2 151 49-226 1-162 (169)
102 cd00154 Rab Rab family. Rab G 99.9 1.1E-23 2.5E-28 178.9 18.6 152 48-221 1-158 (159)
103 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 6.1E-24 1.3E-28 187.4 16.8 161 46-229 2-174 (183)
104 cd04147 Ras_dva Ras-dva subfam 99.9 1.2E-23 2.6E-28 187.9 18.2 156 49-225 1-163 (198)
105 cd04150 Arf1_5_like Arf1-Arf5- 99.9 4.9E-24 1.1E-28 183.7 15.1 148 48-222 1-158 (159)
106 smart00177 ARF ARF-like small 99.9 9E-24 1.9E-28 185.0 16.6 151 47-224 13-173 (175)
107 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.9E-24 4.1E-29 187.3 12.0 146 50-222 2-163 (164)
108 cd04102 RabL3 RabL3 (Rab-like3 99.9 9.4E-24 2E-28 188.7 16.9 161 48-211 1-176 (202)
109 PTZ00132 GTP-binding nuclear p 99.9 3.4E-23 7.4E-28 187.3 20.6 161 42-227 4-170 (215)
110 cd00157 Rho Rho (Ras homology) 99.9 3.7E-23 8E-28 179.3 19.4 152 48-222 1-170 (171)
111 PTZ00133 ADP-ribosylation fact 99.9 1.5E-23 3.2E-28 184.8 16.2 155 47-228 17-181 (182)
112 cd00876 Ras Ras family. The R 99.9 4.7E-23 1E-27 176.2 18.0 154 49-224 1-160 (160)
113 cd04154 Arl2 Arl2 subfamily. 99.9 1.9E-23 4.2E-28 182.2 15.8 150 46-222 13-172 (173)
114 cd01893 Miro1 Miro1 subfamily. 99.9 5.5E-23 1.2E-27 178.2 17.6 155 48-225 1-164 (166)
115 cd04137 RheB Rheb (Ras Homolog 99.9 1.3E-22 2.8E-27 177.9 19.6 159 48-228 2-166 (180)
116 PLN00023 GTP-binding protein; 99.9 2.2E-22 4.8E-27 188.8 18.0 151 41-200 15-189 (334)
117 cd04157 Arl6 Arl6 subfamily. 99.9 6.2E-23 1.3E-27 176.3 11.6 149 49-222 1-161 (162)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.9E-22 4.1E-27 173.1 13.4 148 49-222 1-159 (160)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 4.3E-22 9.4E-27 174.1 15.4 149 47-222 15-173 (174)
120 PRK09518 bifunctional cytidyla 99.9 4.4E-22 9.5E-27 209.1 17.0 215 46-362 274-506 (712)
121 cd04151 Arl1 Arl1 subfamily. 99.9 2.6E-22 5.6E-27 172.3 10.9 147 49-222 1-157 (158)
122 cd00879 Sar1 Sar1 subfamily. 99.9 1.5E-21 3.2E-26 172.8 16.1 151 47-224 19-190 (190)
123 TIGR03594 GTPase_EngA ribosome 99.9 6.5E-22 1.4E-26 197.0 14.7 211 49-363 1-229 (429)
124 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.8E-21 4E-26 169.0 13.5 148 50-222 2-166 (167)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.4E-21 7.4E-26 166.5 14.4 147 49-222 1-166 (167)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.9 5.6E-21 1.2E-25 163.7 15.5 147 49-222 1-157 (158)
127 cd01890 LepA LepA subfamily. 99.9 4.6E-21 9.9E-26 167.7 15.1 149 49-225 2-177 (179)
128 PRK00093 GTP-binding protein D 99.9 6.3E-21 1.4E-25 190.3 17.6 208 48-362 2-229 (435)
129 smart00178 SAR Sar1p-like memb 99.9 1.4E-20 3.1E-25 166.0 15.9 150 47-223 17-183 (184)
130 PF00025 Arf: ADP-ribosylation 99.8 5.4E-20 1.2E-24 161.1 17.9 153 45-224 12-175 (175)
131 COG1100 GTPase SAR1 and relate 99.8 1.8E-19 3.8E-24 163.0 17.5 160 48-228 6-188 (219)
132 cd04159 Arl10_like Arl10-like 99.8 1.6E-19 3.4E-24 153.6 15.8 146 50-222 2-158 (159)
133 TIGR02528 EutP ethanolamine ut 99.8 2.1E-20 4.6E-25 157.4 10.2 130 49-221 2-141 (142)
134 KOG1673|consensus 99.8 8.1E-20 1.8E-24 150.3 13.0 162 42-225 15-186 (205)
135 KOG0073|consensus 99.8 2.4E-19 5.2E-24 149.1 15.2 154 46-226 15-179 (185)
136 cd01897 NOG NOG1 is a nucleola 99.8 2.3E-19 5.1E-24 155.1 14.7 147 49-224 2-167 (168)
137 cd04155 Arl3 Arl3 subfamily. 99.8 3.8E-19 8.2E-24 154.7 15.8 147 46-222 13-172 (173)
138 KOG0070|consensus 99.8 1.3E-18 2.7E-23 148.5 14.5 157 43-226 13-179 (181)
139 cd01898 Obg Obg subfamily. Th 99.8 9.6E-19 2.1E-23 151.5 14.1 151 49-223 2-169 (170)
140 TIGR00231 small_GTP small GTP- 99.8 3.1E-18 6.7E-23 144.7 16.9 150 48-220 2-159 (161)
141 KOG0096|consensus 99.8 2.1E-19 4.5E-24 152.9 9.4 155 47-226 10-170 (216)
142 cd04171 SelB SelB subfamily. 99.8 1.1E-18 2.3E-23 149.9 14.0 144 49-222 2-163 (164)
143 cd01878 HflX HflX subfamily. 99.8 7.2E-19 1.6E-23 157.5 12.7 151 45-224 39-204 (204)
144 KOG3883|consensus 99.8 5.8E-18 1.3E-22 139.1 16.7 159 46-226 8-176 (198)
145 COG1160 Predicted GTPases [Gen 99.8 1.6E-18 3.6E-23 167.0 15.5 180 48-321 4-202 (444)
146 cd01891 TypA_BipA TypA (tyrosi 99.8 1E-18 2.2E-23 155.4 12.9 141 49-214 4-171 (194)
147 PRK04213 GTP-binding protein; 99.8 6.1E-19 1.3E-23 157.5 11.3 149 46-226 8-193 (201)
148 cd01879 FeoB Ferrous iron tran 99.8 1.1E-17 2.4E-22 142.8 15.0 138 56-224 8-156 (158)
149 KOG4423|consensus 99.8 5.6E-20 1.2E-24 155.7 0.1 166 48-230 26-199 (229)
150 TIGR03156 GTP_HflX GTP-binding 99.8 6.2E-18 1.3E-22 163.3 14.2 188 6-223 143-350 (351)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.2E-17 2.6E-22 144.1 13.9 151 49-224 2-165 (168)
152 cd00882 Ras_like_GTPase Ras-li 99.7 6.7E-17 1.5E-21 134.9 15.8 144 56-221 8-156 (157)
153 PRK11058 GTPase HflX; Provisio 99.7 2.2E-17 4.7E-22 163.1 14.9 192 6-225 151-362 (426)
154 KOG0075|consensus 99.7 8.6E-18 1.9E-22 137.2 9.7 147 48-224 21-181 (186)
155 PRK12299 obgE GTPase CgtA; Rev 99.7 4.4E-17 9.5E-22 156.2 15.5 155 49-226 160-329 (335)
156 TIGR01393 lepA GTP-binding pro 99.7 5E-17 1.1E-21 166.8 16.2 151 48-226 4-181 (595)
157 PF08477 Miro: Miro-like prote 99.7 3.9E-17 8.5E-22 133.2 12.3 111 49-178 1-119 (119)
158 PRK03003 GTP-binding protein D 99.7 3.5E-17 7.7E-22 164.6 14.1 154 46-226 210-383 (472)
159 TIGR00157 ribosome small subun 99.7 5.8E-18 1.3E-22 155.9 7.7 95 101-221 24-119 (245)
160 KOG0071|consensus 99.7 8.7E-17 1.9E-21 130.4 13.4 152 47-225 17-178 (180)
161 PRK15467 ethanolamine utilizat 99.7 3.2E-17 6.9E-22 141.1 10.9 136 49-226 3-148 (158)
162 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.1E-16 2.4E-21 159.0 16.1 146 46-227 202-362 (442)
163 PRK15494 era GTPase Era; Provi 99.7 9.1E-17 2E-21 154.8 15.0 150 45-226 50-217 (339)
164 cd01889 SelB_euk SelB subfamil 99.7 9.8E-17 2.1E-21 142.4 13.0 153 48-225 1-186 (192)
165 TIGR00436 era GTP-binding prot 99.7 1.1E-16 2.5E-21 149.7 14.0 147 49-226 2-165 (270)
166 cd01894 EngA1 EngA1 subfamily. 99.7 1.4E-16 3E-21 135.6 12.7 140 52-224 2-157 (157)
167 TIGR02729 Obg_CgtA Obg family 99.7 3.8E-16 8.2E-21 149.6 15.9 152 49-224 159-328 (329)
168 PRK00454 engB GTP-binding prot 99.7 3.3E-16 7.2E-21 139.0 14.3 160 38-225 15-194 (196)
169 cd00881 GTP_translation_factor 99.7 2.8E-16 6.1E-21 138.0 13.1 149 50-225 2-187 (189)
170 cd01881 Obg_like The Obg-like 99.7 1.5E-16 3.4E-21 138.1 11.1 153 53-223 2-175 (176)
171 cd04164 trmE TrmE (MnmE, ThdF, 99.7 4.5E-16 9.8E-21 132.2 13.4 140 48-224 2-156 (157)
172 TIGR00487 IF-2 translation ini 99.7 1.1E-15 2.4E-20 156.3 17.0 144 46-222 86-247 (587)
173 TIGR03594 GTPase_EngA ribosome 99.7 2E-15 4.4E-20 150.4 18.0 153 45-226 170-345 (429)
174 cd01895 EngA2 EngA2 subfamily. 99.7 2.7E-15 5.7E-20 129.5 16.1 149 47-223 2-173 (174)
175 PRK05291 trmE tRNA modificatio 99.7 6.1E-16 1.3E-20 154.4 13.7 142 47-226 215-371 (449)
176 PRK05433 GTP-binding protein L 99.7 1E-15 2.2E-20 157.5 15.6 152 47-226 7-185 (600)
177 TIGR03598 GTPase_YsxC ribosome 99.7 6.6E-16 1.4E-20 135.5 11.3 148 39-214 10-179 (179)
178 CHL00189 infB translation init 99.7 1.5E-15 3.2E-20 157.7 15.0 147 46-224 243-409 (742)
179 KOG0076|consensus 99.6 2.7E-16 5.8E-21 132.2 7.5 156 45-227 15-189 (197)
180 PRK12297 obgE GTPase CgtA; Rev 99.6 3.8E-15 8.2E-20 146.5 16.6 151 49-226 160-328 (424)
181 TIGR00475 selB selenocysteine- 99.6 4.8E-15 1E-19 152.1 15.0 148 49-226 2-167 (581)
182 cd01888 eIF2_gamma eIF2-gamma 99.6 3.4E-15 7.3E-20 133.9 12.2 109 90-225 83-199 (203)
183 cd04163 Era Era subfamily. Er 99.6 1E-14 2.2E-19 124.7 14.2 151 47-223 3-167 (168)
184 TIGR00437 feoB ferrous iron tr 99.6 8.5E-15 1.8E-19 150.5 15.3 138 56-224 6-154 (591)
185 PRK05306 infB translation init 99.6 1E-14 2.2E-19 152.8 15.5 143 46-222 289-449 (787)
186 KOG0074|consensus 99.6 5.4E-15 1.2E-19 120.2 10.0 155 45-223 15-177 (185)
187 PRK00089 era GTPase Era; Revie 99.6 1.8E-14 3.8E-19 136.4 13.9 153 46-226 4-172 (292)
188 PF02421 FeoB_N: Ferrous iron 99.6 1.4E-14 3.1E-19 123.3 11.9 142 48-220 1-156 (156)
189 cd00880 Era_like Era (E. coli 99.6 1.7E-14 3.8E-19 121.7 12.2 141 56-223 8-162 (163)
190 cd01859 MJ1464 MJ1464. This f 99.6 4.4E-15 9.6E-20 127.3 8.6 152 104-362 3-154 (156)
191 COG2229 Predicted GTPase [Gene 99.6 5.2E-14 1.1E-18 120.1 14.5 151 43-223 6-176 (187)
192 PRK12296 obgE GTPase CgtA; Rev 99.6 2.9E-14 6.3E-19 142.1 14.6 164 48-227 160-342 (500)
193 PRK09518 bifunctional cytidyla 99.6 3.4E-14 7.4E-19 149.6 15.8 151 46-226 449-622 (712)
194 cd04105 SR_beta Signal recogni 99.6 3.3E-14 7E-19 127.5 13.1 116 49-182 2-124 (203)
195 TIGR00491 aIF-2 translation in 99.6 4.1E-14 9E-19 144.6 14.7 148 48-223 5-214 (590)
196 PRK00093 GTP-binding protein D 99.6 4.7E-14 1E-18 140.9 14.7 151 46-226 172-345 (435)
197 PF00009 GTP_EFTU: Elongation 99.6 1E-14 2.2E-19 129.1 8.5 153 46-225 2-187 (188)
198 PRK09554 feoB ferrous iron tra 99.6 9.4E-14 2E-18 146.2 16.8 149 47-224 3-167 (772)
199 PRK10218 GTP-binding protein; 99.5 1.2E-13 2.5E-18 141.8 16.2 154 47-225 5-195 (607)
200 KOG0072|consensus 99.5 1.8E-14 3.9E-19 117.5 8.1 152 47-226 18-180 (182)
201 KOG0084|consensus 99.5 3E-15 6.6E-20 128.7 3.7 62 293-362 5-66 (205)
202 cd01896 DRG The developmentall 99.5 1.8E-13 4E-18 125.2 15.3 164 49-225 2-226 (233)
203 TIGR01394 TypA_BipA GTP-bindin 99.5 6.2E-14 1.3E-18 143.9 13.5 153 49-226 3-192 (594)
204 TIGR00483 EF-1_alpha translati 99.5 5.9E-14 1.3E-18 139.7 12.9 149 44-217 4-199 (426)
205 PRK04000 translation initiatio 99.5 1.6E-13 3.6E-18 135.6 14.3 158 42-226 4-202 (411)
206 PRK12317 elongation factor 1-a 99.5 1.3E-13 2.8E-18 137.2 13.2 151 44-217 3-197 (425)
207 PRK12289 GTPase RsgA; Reviewed 99.5 5.5E-14 1.2E-18 135.4 9.8 94 101-221 77-171 (352)
208 PRK12298 obgE GTPase CgtA; Rev 99.5 3.1E-13 6.7E-18 132.3 15.1 154 49-226 161-334 (390)
209 cd01876 YihA_EngB The YihA (En 99.5 2.1E-13 4.5E-18 116.8 12.4 144 50-223 2-169 (170)
210 TIGR03680 eif2g_arch translati 99.5 1.6E-13 3.4E-18 135.6 12.6 157 46-225 3-196 (406)
211 COG2262 HflX GTPases [General 99.5 3.2E-13 6.9E-18 128.8 13.8 191 6-226 146-357 (411)
212 PRK12288 GTPase RsgA; Reviewed 99.5 6.5E-14 1.4E-18 134.8 9.0 88 111-222 118-205 (347)
213 cd04166 CysN_ATPS CysN_ATPS su 99.5 2.8E-13 6.1E-18 121.9 11.0 104 89-216 76-185 (208)
214 KOG0094|consensus 99.5 1.5E-14 3.3E-19 124.0 2.3 59 296-362 21-79 (221)
215 cd04168 TetM_like Tet(M)-like 99.4 1.4E-12 3.1E-17 119.5 14.2 107 50-181 2-130 (237)
216 PRK04004 translation initiatio 99.4 7.9E-13 1.7E-17 135.7 13.7 147 48-222 7-215 (586)
217 cd04167 Snu114p Snu114p subfam 99.4 6.9E-13 1.5E-17 119.7 11.8 107 49-180 2-136 (213)
218 PRK10512 selenocysteinyl-tRNA- 99.4 1.8E-12 4E-17 133.7 14.9 145 50-225 3-166 (614)
219 KOG1707|consensus 99.4 4.1E-13 8.9E-18 132.2 9.2 163 43-225 5-175 (625)
220 KOG0462|consensus 99.4 3.5E-12 7.5E-17 124.8 14.9 155 47-226 62-236 (650)
221 cd01855 YqeH YqeH. YqeH is an 99.4 5.2E-13 1.1E-17 118.3 8.3 94 103-225 24-125 (190)
222 COG1159 Era GTPase [General fu 99.4 4.4E-12 9.6E-17 116.6 14.2 152 45-226 4-173 (298)
223 PRK00098 GTPase RsgA; Reviewed 99.4 3.6E-13 7.8E-18 127.7 6.8 84 111-220 78-162 (298)
224 COG0481 LepA Membrane GTPase L 99.4 1.3E-11 2.8E-16 119.1 16.9 151 47-226 11-187 (603)
225 cd01854 YjeQ_engC YjeQ/EngC. 99.4 5.8E-13 1.3E-17 125.6 7.6 86 109-221 74-160 (287)
226 COG1160 Predicted GTPases [Gen 99.4 9.4E-12 2E-16 120.5 14.5 153 45-225 176-351 (444)
227 cd01884 EF_Tu EF-Tu subfamily. 99.4 1.4E-11 3.1E-16 109.6 14.4 142 47-213 2-171 (195)
228 cd01883 EF1_alpha Eukaryotic e 99.4 2.3E-12 5E-17 116.9 9.4 104 88-214 75-194 (219)
229 TIGR00485 EF-Tu translation el 99.4 9.8E-12 2.1E-16 122.5 14.0 142 45-211 10-179 (394)
230 PRK12736 elongation factor Tu; 99.3 1.5E-11 3.2E-16 121.2 14.5 157 44-225 9-201 (394)
231 KOG0098|consensus 99.3 3.5E-13 7.6E-18 114.8 2.4 62 295-364 4-65 (216)
232 cd04165 GTPBP1_like GTPBP1-lik 99.3 9.8E-12 2.1E-16 113.0 11.9 107 90-221 84-219 (224)
233 COG0486 ThdF Predicted GTPase 99.3 7.5E-12 1.6E-16 121.5 11.5 148 46-227 216-378 (454)
234 KOG0078|consensus 99.3 8E-13 1.7E-17 115.4 4.2 63 293-363 8-70 (207)
235 cd01885 EF2 EF2 (for archaea a 99.3 1.6E-11 3.4E-16 111.3 12.4 118 49-193 2-151 (222)
236 cd01857 HSR1_MMR1 HSR1/MMR1. 99.3 1.9E-12 4.2E-17 109.1 6.0 77 108-212 6-84 (141)
237 COG0218 Predicted GTPase [Gene 99.3 4.7E-11 1E-15 104.3 14.5 157 39-225 16-197 (200)
238 PRK12735 elongation factor Tu; 99.3 3.1E-11 6.6E-16 119.0 14.5 157 44-225 9-203 (396)
239 KOG0080|consensus 99.3 8.3E-13 1.8E-17 109.8 2.7 61 294-362 8-68 (209)
240 KOG0095|consensus 99.3 1.9E-12 4.2E-17 106.2 4.4 60 295-362 5-64 (213)
241 PF10662 PduV-EutP: Ethanolami 99.3 2.7E-11 5.8E-16 101.2 11.1 131 49-221 3-142 (143)
242 cd01856 YlqF YlqF. Proteins o 99.3 5.2E-12 1.1E-16 110.1 6.8 157 106-362 12-168 (171)
243 KOG0394|consensus 99.3 9E-13 1.9E-17 112.2 0.8 61 295-363 7-67 (210)
244 cd04169 RF3 RF3 subfamily. Pe 99.3 7E-11 1.5E-15 110.2 13.3 109 49-182 4-138 (267)
245 PRK13351 elongation factor G; 99.3 2.9E-11 6.2E-16 127.4 11.9 108 46-182 7-140 (687)
246 PLN00043 elongation factor 1-a 99.3 4.3E-11 9.3E-16 119.4 12.5 146 45-215 5-203 (447)
247 TIGR03597 GTPase_YqeH ribosome 99.3 6.9E-12 1.5E-16 121.9 6.5 94 100-222 50-150 (360)
248 COG0532 InfB Translation initi 99.2 1.3E-10 2.9E-15 114.4 14.8 146 49-223 7-168 (509)
249 PRK00741 prfC peptide chain re 99.2 1.6E-10 3.5E-15 117.3 14.6 110 47-181 10-145 (526)
250 KOG0092|consensus 99.2 8.4E-12 1.8E-16 107.2 4.2 59 296-362 4-62 (200)
251 COG1162 Predicted GTPases [Gen 99.2 4E-11 8.7E-16 111.3 8.6 99 101-224 67-166 (301)
252 KOG0093|consensus 99.2 1.1E-11 2.3E-16 101.7 4.0 74 283-364 7-80 (193)
253 PLN03126 Elongation factor Tu; 99.2 1.7E-10 3.7E-15 115.7 13.4 144 44-212 78-249 (478)
254 cd04104 p47_IIGP_like p47 (47- 99.2 1.8E-10 4E-15 102.7 12.2 152 48-227 2-186 (197)
255 KOG0079|consensus 99.2 1.6E-12 3.4E-17 106.7 -1.2 60 295-362 6-65 (198)
256 PRK05124 cysN sulfate adenylyl 99.2 1.2E-10 2.7E-15 117.0 11.5 149 43-216 23-216 (474)
257 CHL00071 tufA elongation facto 99.2 2.9E-10 6.4E-15 112.5 13.9 144 44-212 9-180 (409)
258 KOG0077|consensus 99.2 4.1E-11 8.9E-16 100.4 6.6 149 48-223 21-191 (193)
259 cd01850 CDC_Septin CDC/Septin. 99.2 4E-10 8.7E-15 105.6 14.1 137 47-209 4-186 (276)
260 cd01858 NGP_1 NGP-1. Autoanti 99.2 4.9E-11 1.1E-15 102.4 6.8 87 110-224 5-94 (157)
261 TIGR02034 CysN sulfate adenyly 99.2 1.5E-10 3.4E-15 114.4 11.2 103 89-215 79-187 (406)
262 cd01899 Ygr210 Ygr210 subfamil 99.2 5.5E-10 1.2E-14 106.4 14.3 76 50-125 1-111 (318)
263 PTZ00327 eukaryotic translatio 99.2 3E-10 6.6E-15 113.2 12.6 157 45-225 32-233 (460)
264 TIGR03596 GTPase_YlqF ribosome 99.2 9.7E-11 2.1E-15 110.0 8.6 129 107-322 15-143 (276)
265 KOG0087|consensus 99.2 2.6E-11 5.7E-16 105.6 4.4 66 290-363 7-72 (222)
266 PRK14845 translation initiatio 99.1 4.7E-10 1E-14 120.6 14.1 138 56-223 473-671 (1049)
267 PRK00049 elongation factor Tu; 99.1 7.9E-10 1.7E-14 109.0 14.7 155 45-224 10-202 (396)
268 PLN03127 Elongation factor Tu; 99.1 8.1E-10 1.8E-14 110.2 14.3 163 38-225 52-252 (447)
269 KOG1423|consensus 99.1 7.7E-10 1.7E-14 101.7 12.7 159 44-226 69-272 (379)
270 TIGR00503 prfC peptide chain r 99.1 6.2E-10 1.3E-14 113.1 13.4 110 46-180 10-145 (527)
271 PRK09563 rbgA GTPase YlqF; Rev 99.1 2E-10 4.4E-15 108.4 8.7 129 107-322 18-146 (287)
272 KOG0086|consensus 99.1 1.9E-11 4.2E-16 100.8 1.3 62 293-362 5-66 (214)
273 PRK05506 bifunctional sulfate 99.1 4.8E-10 1E-14 117.0 11.6 147 43-215 20-211 (632)
274 COG0370 FeoB Fe2+ transport sy 99.1 1.2E-09 2.6E-14 110.7 13.0 149 48-227 4-166 (653)
275 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.1E-09 2.4E-14 99.5 11.6 155 49-226 1-177 (232)
276 smart00010 small_GTPase Small 99.1 8.6E-10 1.9E-14 89.9 9.9 110 49-214 2-115 (124)
277 cd01886 EF-G Elongation factor 99.1 7E-10 1.5E-14 103.7 10.2 134 50-210 2-160 (270)
278 TIGR00484 EF-G translation elo 99.1 7.6E-10 1.6E-14 116.5 11.7 137 43-210 6-171 (689)
279 KOG1145|consensus 99.1 2.3E-09 4.9E-14 105.3 13.8 132 56-223 165-314 (683)
280 KOG1489|consensus 99.1 2.4E-09 5.3E-14 98.9 12.9 141 56-222 208-364 (366)
281 cd04170 EF-G_bact Elongation f 99.1 1.5E-09 3.2E-14 101.5 11.7 141 50-221 2-169 (268)
282 PF09439 SRPRB: Signal recogni 99.0 8.4E-10 1.8E-14 96.2 8.9 113 49-182 5-127 (181)
283 COG1163 DRG Predicted GTPase [ 99.0 1.5E-08 3.3E-13 94.1 16.9 197 16-225 28-289 (365)
284 PTZ00141 elongation factor 1- 99.0 3.4E-09 7.3E-14 105.9 13.6 147 45-215 5-203 (446)
285 PRK09602 translation-associate 99.0 6.5E-09 1.4E-13 102.0 15.0 77 48-124 2-113 (396)
286 cd01849 YlqF_related_GTPase Yl 99.0 6.7E-10 1.4E-14 95.1 6.8 84 115-225 1-85 (155)
287 COG1217 TypA Predicted membran 99.0 6.7E-09 1.4E-13 100.3 14.2 156 46-226 6-196 (603)
288 KOG0083|consensus 99.0 2.6E-10 5.5E-15 92.2 3.3 54 301-362 1-55 (192)
289 PRK13796 GTPase YqeH; Provisio 99.0 7.3E-10 1.6E-14 107.9 7.1 92 102-223 58-157 (365)
290 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 2E-10 4.3E-15 101.2 2.7 58 296-362 4-61 (182)
291 KOG0097|consensus 99.0 1.7E-10 3.7E-15 94.0 2.1 63 292-362 6-68 (215)
292 KOG0081|consensus 99.0 1.7E-10 3.7E-15 95.9 1.8 68 294-362 6-75 (219)
293 PRK12740 elongation factor G; 99.0 4E-09 8.7E-14 110.9 12.4 99 56-181 7-126 (668)
294 cd04128 Spg1 Spg1p. Spg1p (se 99.0 2.3E-10 4.9E-15 100.8 2.4 57 298-362 1-57 (182)
295 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 3.1E-10 6.7E-15 103.6 3.3 60 294-362 10-69 (232)
296 TIGR00490 aEF-2 translation el 99.0 2.9E-09 6.3E-14 112.5 11.0 111 46-181 18-152 (720)
297 KOG0393|consensus 99.0 7.6E-10 1.6E-14 97.1 5.2 57 297-362 4-61 (198)
298 cd04131 Rnd Rnd subfamily. Th 98.9 4E-10 8.8E-15 98.8 2.6 56 298-362 2-57 (178)
299 KOG0091|consensus 98.9 1.5E-10 3.3E-15 96.7 -0.2 59 296-362 7-66 (213)
300 cd04120 Rab12 Rab12 subfamily. 98.9 4E-10 8.8E-15 100.8 2.4 56 299-362 2-57 (202)
301 cd04133 Rop_like Rop subfamily 98.9 5.8E-10 1.3E-14 97.6 2.6 56 298-362 2-57 (176)
302 PRK12739 elongation factor G; 98.9 1.8E-08 3.9E-13 106.2 14.2 109 46-181 7-139 (691)
303 PF01926 MMR_HSR1: 50S ribosom 98.9 2.7E-08 5.9E-13 80.6 12.2 74 49-126 1-92 (116)
304 COG1084 Predicted GTPase [Gene 98.9 4.4E-08 9.5E-13 91.4 14.7 147 49-225 170-336 (346)
305 cd04121 Rab40 Rab40 subfamily. 98.9 7.9E-10 1.7E-14 98.0 3.1 59 296-362 5-63 (189)
306 KOG1191|consensus 98.9 4E-09 8.6E-14 102.7 7.9 166 48-229 269-454 (531)
307 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 6.7E-10 1.5E-14 100.8 2.4 56 298-362 2-57 (222)
308 PRK00007 elongation factor G; 98.9 1.6E-08 3.6E-13 106.5 13.0 112 43-181 6-141 (693)
309 cd01875 RhoG RhoG subfamily. 98.9 8.1E-10 1.8E-14 97.9 2.5 57 297-362 3-59 (191)
310 KOG1707|consensus 98.8 5.8E-08 1.2E-12 96.4 14.4 152 47-225 424-583 (625)
311 cd01874 Cdc42 Cdc42 subfamily. 98.8 1.3E-09 2.9E-14 95.2 2.6 56 298-362 2-57 (175)
312 cd04108 Rab36_Rab34 Rab34/Rab3 98.8 1.4E-09 3.1E-14 94.5 2.6 56 299-362 2-57 (170)
313 KOG0088|consensus 98.8 4.3E-10 9.4E-15 93.5 -1.2 61 294-362 10-70 (218)
314 PRK01889 GTPase RsgA; Reviewed 98.8 7.3E-09 1.6E-13 100.6 6.9 82 111-220 110-192 (356)
315 COG4917 EutP Ethanolamine util 98.8 2.8E-08 6.2E-13 79.8 8.7 132 49-222 3-143 (148)
316 KOG0705|consensus 98.8 2E-08 4.4E-13 98.5 9.3 156 46-227 29-191 (749)
317 PLN03110 Rab GTPase; Provision 98.8 4.1E-09 8.8E-14 95.4 3.6 60 295-362 10-69 (216)
318 KOG0090|consensus 98.8 3.2E-08 7E-13 86.7 8.9 152 49-223 40-237 (238)
319 cd04117 Rab15 Rab15 subfamily. 98.8 3.3E-09 7.2E-14 91.2 2.5 57 298-362 1-57 (161)
320 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 3E-09 6.6E-14 94.9 2.2 57 298-362 1-58 (201)
321 cd04122 Rab14 Rab14 subfamily. 98.8 3.7E-09 8E-14 91.1 2.7 58 297-362 2-59 (166)
322 cd04119 RJL RJL (RabJ-Like) su 98.8 3.3E-09 7.1E-14 90.9 2.3 58 298-363 1-58 (168)
323 cd01892 Miro2 Miro2 subfamily. 98.7 3.9E-09 8.4E-14 91.6 2.5 59 296-362 3-62 (169)
324 cd01865 Rab3 Rab3 subfamily. 98.7 4.3E-09 9.4E-14 90.7 2.7 57 298-362 2-58 (165)
325 COG0536 Obg Predicted GTPase [ 98.7 9.7E-08 2.1E-12 89.5 11.7 145 56-227 171-335 (369)
326 PF00071 Ras: Ras family; Int 98.7 3.5E-09 7.5E-14 90.7 2.0 56 299-362 1-56 (162)
327 cd04102 RabL3 RabL3 (Rab-like3 98.7 3.9E-09 8.5E-14 94.4 2.2 57 298-362 1-62 (202)
328 cd01867 Rab8_Rab10_Rab13_like 98.7 5.1E-09 1.1E-13 90.4 2.6 59 296-362 2-60 (167)
329 PLN03071 GTP-binding nuclear p 98.7 7.1E-09 1.5E-13 94.0 3.5 60 295-362 11-70 (219)
330 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 1.3E-07 2.8E-12 84.1 11.5 153 49-226 2-185 (196)
331 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.7 5.5E-09 1.2E-13 91.0 2.3 56 298-362 3-58 (172)
332 COG2895 CysN GTPases - Sulfate 98.7 2E-07 4.4E-12 87.5 12.7 142 46-214 5-192 (431)
333 PLN00023 GTP-binding protein; 98.7 6.6E-09 1.4E-13 98.3 2.7 60 295-362 19-91 (334)
334 COG3596 Predicted GTPase [Gene 98.7 8E-08 1.7E-12 87.7 9.4 158 44-226 36-223 (296)
335 cd04110 Rab35 Rab35 subfamily. 98.7 8E-09 1.7E-13 92.2 2.8 59 296-362 5-63 (199)
336 cd01871 Rac1_like Rac1-like su 98.7 8E-09 1.7E-13 90.1 2.6 56 298-362 2-57 (174)
337 cd04109 Rab28 Rab28 subfamily. 98.7 7.5E-09 1.6E-13 93.5 2.2 57 298-362 1-58 (215)
338 cd04136 Rap_like Rap-like subf 98.7 7E-09 1.5E-13 88.7 1.9 56 298-362 2-57 (163)
339 cd04116 Rab9 Rab9 subfamily. 98.7 1.1E-08 2.5E-13 88.3 2.8 59 296-362 4-62 (170)
340 cd04138 H_N_K_Ras_like H-Ras/N 98.7 9.6E-09 2.1E-13 87.5 2.2 56 298-362 2-57 (162)
341 cd04118 Rab24 Rab24 subfamily. 98.7 9.2E-09 2E-13 91.0 2.1 57 298-362 1-58 (193)
342 cd04142 RRP22 RRP22 subfamily. 98.7 8.6E-09 1.9E-13 92.0 1.9 57 298-362 1-57 (198)
343 PRK07560 elongation factor EF- 98.6 2.6E-07 5.5E-12 98.1 13.1 111 46-181 19-153 (731)
344 cd01864 Rab19 Rab19 subfamily. 98.6 1.3E-08 2.8E-13 87.6 2.7 60 296-363 2-61 (165)
345 COG5256 TEF1 Translation elong 98.6 3.5E-07 7.5E-12 87.9 12.6 150 44-216 4-202 (428)
346 cd04125 RabA_like RabA-like su 98.6 1.1E-08 2.5E-13 90.1 2.4 58 298-363 1-58 (188)
347 cd00066 G-alpha G protein alph 98.6 3.9E-07 8.5E-12 87.2 13.0 131 73-227 148-313 (317)
348 cd04111 Rab39 Rab39 subfamily. 98.6 1.3E-08 2.9E-13 91.7 2.6 58 297-362 2-60 (211)
349 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.6 1.4E-08 3.1E-13 87.3 2.7 57 298-362 3-59 (166)
350 PTZ00369 Ras-like protein; Pro 98.6 1.3E-08 2.8E-13 89.9 2.5 57 297-362 5-61 (189)
351 cd04175 Rap1 Rap1 subgroup. T 98.6 1.2E-08 2.7E-13 87.5 2.2 56 298-362 2-57 (164)
352 cd04176 Rap2 Rap2 subgroup. T 98.6 1.2E-08 2.6E-13 87.4 1.9 56 298-362 2-57 (163)
353 PLN03108 Rab family protein; P 98.6 1.7E-08 3.7E-13 90.9 2.8 59 296-362 5-63 (210)
354 PF05783 DLIC: Dynein light in 98.6 1.1E-06 2.4E-11 87.8 15.6 179 48-226 26-265 (472)
355 cd04134 Rho3 Rho3 subfamily. 98.6 1.7E-08 3.6E-13 89.3 2.4 55 299-362 2-56 (189)
356 smart00275 G_alpha G protein a 98.6 5.5E-07 1.2E-11 87.0 13.0 143 61-227 149-336 (342)
357 cd01873 RhoBTB RhoBTB subfamil 98.6 1.8E-08 3.8E-13 89.8 2.5 65 297-362 2-74 (195)
358 cd04127 Rab27A Rab27a subfamil 98.6 2E-08 4.3E-13 87.6 2.7 66 296-362 3-71 (180)
359 cd04143 Rhes_like Rhes_like su 98.6 1.2E-08 2.7E-13 94.1 1.5 56 298-362 1-56 (247)
360 cd04115 Rab33B_Rab33A Rab33B/R 98.6 2.1E-08 4.6E-13 86.8 2.6 58 297-362 2-59 (170)
361 cd01868 Rab11_like Rab11-like. 98.6 2.6E-08 5.6E-13 85.6 2.9 58 297-362 3-60 (165)
362 cd04103 Centaurin_gamma Centau 98.6 1.9E-08 4.1E-13 86.4 2.0 56 298-363 1-56 (158)
363 cd04106 Rab23_lke Rab23-like s 98.6 2.4E-08 5.2E-13 85.3 2.3 57 298-362 1-59 (162)
364 KOG0395|consensus 98.6 7.2E-08 1.6E-12 85.8 5.2 58 297-363 3-60 (196)
365 PTZ00132 GTP-binding nuclear p 98.6 3.2E-08 6.9E-13 89.3 2.8 60 295-362 7-66 (215)
366 cd00877 Ran Ran (Ras-related n 98.6 2.7E-08 5.9E-13 86.0 2.3 57 298-362 1-57 (166)
367 cd04124 RabL2 RabL2 subfamily. 98.6 2.9E-08 6.2E-13 85.3 2.3 57 298-362 1-57 (161)
368 cd04144 Ras2 Ras2 subfamily. 98.5 2.1E-08 4.4E-13 88.8 1.1 55 299-362 1-55 (190)
369 TIGR00101 ureG urease accessor 98.5 1.8E-06 4E-11 77.0 13.5 54 171-225 141-196 (199)
370 cd01866 Rab2 Rab2 subfamily. 98.5 4.3E-08 9.4E-13 84.7 2.9 60 296-363 3-62 (168)
371 cd01860 Rab5_related Rab5-rela 98.5 4.4E-08 9.6E-13 83.8 2.7 58 297-362 1-58 (163)
372 KOG3905|consensus 98.5 1.4E-06 3.1E-11 80.9 12.1 177 49-225 54-290 (473)
373 cd04112 Rab26 Rab26 subfamily. 98.5 4.5E-08 9.8E-13 86.6 2.2 57 298-362 1-58 (191)
374 TIGR02836 spore_IV_A stage IV 98.5 2.4E-06 5.3E-11 82.7 14.0 153 46-225 16-237 (492)
375 PLN03118 Rab family protein; P 98.5 7.4E-08 1.6E-12 86.7 3.4 63 291-362 8-70 (211)
376 cd04113 Rab4 Rab4 subfamily. 98.5 5.1E-08 1.1E-12 83.3 2.3 57 298-362 1-57 (161)
377 cd01870 RhoA_like RhoA-like su 98.5 5.2E-08 1.1E-12 84.5 2.3 56 298-362 2-57 (175)
378 cd04132 Rho4_like Rho4-like su 98.5 4.7E-08 1E-12 85.9 1.9 56 298-362 1-57 (187)
379 KOG4252|consensus 98.5 3.5E-09 7.5E-14 89.9 -5.1 61 295-363 18-78 (246)
380 cd01862 Rab7 Rab7 subfamily. 98.5 6.3E-08 1.4E-12 83.5 2.5 57 298-362 1-57 (172)
381 cd01861 Rab6 Rab6 subfamily. 98.5 6.2E-08 1.3E-12 82.7 2.3 57 298-362 1-57 (161)
382 KOG4423|consensus 98.5 8.7E-10 1.9E-14 94.2 -8.9 64 294-364 22-85 (229)
383 cd04145 M_R_Ras_like M-Ras/R-R 98.5 6.7E-08 1.4E-12 82.7 2.5 57 297-362 2-58 (164)
384 smart00173 RAS Ras subfamily o 98.5 4.8E-08 1E-12 83.7 1.6 56 298-362 1-56 (164)
385 cd04101 RabL4 RabL4 (Rab-like4 98.5 6.2E-08 1.3E-12 83.0 2.2 57 298-362 1-60 (164)
386 cd04178 Nucleostemin_like Nucl 98.5 5.2E-07 1.1E-11 78.6 7.7 24 298-321 118-141 (172)
387 cd04148 RGK RGK subfamily. Th 98.5 6.1E-08 1.3E-12 88.0 2.0 57 298-362 1-58 (221)
388 smart00176 RAN Ran (Ras-relate 98.5 5E-08 1.1E-12 87.2 1.3 52 303-362 1-52 (200)
389 COG1100 GTPase SAR1 and relate 98.5 7.5E-08 1.6E-12 86.8 2.5 57 298-362 6-62 (219)
390 cd04130 Wrch_1 Wrch-1 subfamil 98.5 6.4E-08 1.4E-12 84.1 1.9 56 298-362 1-56 (173)
391 KOG1144|consensus 98.5 7.9E-07 1.7E-11 90.3 9.6 160 44-228 472-690 (1064)
392 TIGR00073 hypB hydrogenase acc 98.4 2.3E-06 4.9E-11 76.9 11.6 56 167-223 148-205 (207)
393 KOG1490|consensus 98.4 1.1E-06 2.4E-11 85.9 10.0 155 49-228 170-344 (620)
394 cd04177 RSR1 RSR1 subgroup. R 98.4 8.5E-08 1.8E-12 82.8 2.1 56 298-362 2-57 (168)
395 cd04140 ARHI_like ARHI subfami 98.4 9E-08 1.9E-12 82.4 2.2 56 298-362 2-57 (165)
396 PLN00116 translation elongatio 98.4 1.6E-06 3.4E-11 93.4 12.0 68 88-180 96-163 (843)
397 TIGR00991 3a0901s02IAP34 GTP-b 98.4 2.5E-06 5.5E-11 80.4 11.8 114 46-181 37-167 (313)
398 PRK13768 GTPase; Provisional 98.4 8.4E-07 1.8E-11 82.2 8.4 110 91-225 98-247 (253)
399 cd04135 Tc10 TC10 subfamily. 98.4 1.1E-07 2.4E-12 82.3 2.3 56 298-362 1-56 (174)
400 cd04146 RERG_RasL11_like RERG/ 98.4 7E-08 1.5E-12 83.0 0.7 56 299-363 1-56 (165)
401 PRK09866 hypothetical protein; 98.4 2.6E-06 5.5E-11 86.7 11.8 108 91-222 231-350 (741)
402 PTZ00416 elongation factor 2; 98.4 1.8E-06 3.8E-11 92.8 11.2 108 46-180 18-157 (836)
403 smart00174 RHO Rho (Ras homolo 98.4 1.2E-07 2.5E-12 82.2 1.6 54 300-362 1-54 (174)
404 COG3276 SelB Selenocysteine-sp 98.4 3.8E-06 8.3E-11 81.4 12.0 139 56-225 12-162 (447)
405 PTZ00258 GTP-binding protein; 98.4 7.5E-06 1.6E-10 80.0 13.7 79 44-124 18-126 (390)
406 smart00175 RAB Rab subfamily o 98.3 2.3E-07 5E-12 79.2 2.6 57 298-362 1-57 (164)
407 cd04114 Rab30 Rab30 subfamily. 98.3 3.1E-07 6.7E-12 79.0 3.0 59 296-362 6-64 (169)
408 KOG1673|consensus 98.3 2.8E-07 6.1E-12 76.7 2.4 59 295-361 18-76 (205)
409 cd01853 Toc34_like Toc34-like 98.3 4.9E-06 1.1E-10 76.8 10.5 113 46-182 30-164 (249)
410 COG5257 GCD11 Translation init 98.3 8.5E-06 1.8E-10 75.9 11.8 155 46-227 9-204 (415)
411 cd01863 Rab18 Rab18 subfamily. 98.3 3.2E-07 7E-12 78.3 2.3 57 298-362 1-57 (161)
412 cd04139 RalA_RalB RalA/RalB su 98.3 2.9E-07 6.3E-12 78.5 1.8 57 298-363 1-57 (164)
413 cd01882 BMS1 Bms1. Bms1 is an 98.3 1.2E-05 2.7E-10 73.1 12.2 133 47-212 39-183 (225)
414 KOG3886|consensus 98.3 1.9E-06 4E-11 76.7 6.4 137 48-209 5-163 (295)
415 cd04162 Arl9_Arfrp2_like Arl9/ 98.2 3.5E-07 7.6E-12 78.9 0.9 51 300-362 2-52 (164)
416 COG1161 Predicted GTPases [Gen 98.2 2E-06 4.2E-11 82.5 5.6 93 98-220 18-112 (322)
417 KOG0458|consensus 98.2 2E-05 4.3E-10 78.7 12.7 153 39-216 169-373 (603)
418 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.2 5.5E-07 1.2E-11 79.1 1.5 57 297-362 3-60 (183)
419 KOG0410|consensus 98.2 1.6E-06 3.5E-11 80.7 4.2 148 42-225 173-341 (410)
420 cd00154 Rab Rab family. Rab G 98.2 8.4E-07 1.8E-11 74.6 2.2 57 298-362 1-57 (159)
421 cd04147 Ras_dva Ras-dva subfam 98.2 5.9E-07 1.3E-11 79.9 1.1 55 299-362 1-55 (198)
422 cd04123 Rab21 Rab21 subfamily. 98.1 1E-06 2.3E-11 74.8 2.4 57 298-362 1-57 (162)
423 cd00157 Rho Rho (Ras homology) 98.1 1E-06 2.2E-11 75.8 2.3 56 298-362 1-56 (171)
424 PF00350 Dynamin_N: Dynamin fa 98.1 8.4E-06 1.8E-10 70.2 7.9 50 91-140 102-155 (168)
425 cd04126 Rab20 Rab20 subfamily. 98.1 9.2E-07 2E-11 80.2 1.8 52 298-362 1-52 (220)
426 KOG0468|consensus 98.1 1.1E-05 2.5E-10 81.2 9.3 113 43-180 123-262 (971)
427 COG0480 FusA Translation elong 98.1 2E-05 4.4E-10 82.2 11.4 110 48-182 11-143 (697)
428 PF04548 AIG1: AIG1 family; I 98.1 3E-05 6.5E-10 69.9 11.2 155 48-227 1-188 (212)
429 cd04129 Rho2 Rho2 subfamily. 98.1 1.5E-06 3.3E-11 76.5 2.4 56 298-362 2-57 (187)
430 KOG0461|consensus 98.1 4.7E-05 1E-09 71.6 12.0 151 48-227 8-195 (522)
431 cd04149 Arf6 Arf6 subfamily. 98.1 1.1E-06 2.3E-11 76.2 1.0 53 297-362 9-61 (168)
432 cd04150 Arf1_5_like Arf1-Arf5- 98.1 1E-06 2.2E-11 75.6 0.7 52 298-362 1-52 (159)
433 cd04137 RheB Rheb (Ras Homolog 98.1 1.6E-06 3.4E-11 75.6 1.8 56 298-362 2-57 (180)
434 PTZ00133 ADP-ribosylation fact 98.1 1.2E-06 2.5E-11 77.1 1.0 53 297-362 17-69 (182)
435 cd01893 Miro1 Miro1 subfamily. 98.1 1.6E-06 3.4E-11 74.7 1.6 55 298-362 1-55 (166)
436 PRK09601 GTP-binding protein Y 98.0 8.3E-05 1.8E-09 71.9 13.5 75 48-124 3-107 (364)
437 PLN00223 ADP-ribosylation fact 98.0 1.6E-06 3.4E-11 76.2 1.4 53 297-362 17-69 (181)
438 PRK09435 membrane ATPase/prote 98.0 2.6E-05 5.7E-10 74.8 9.6 105 89-225 148-260 (332)
439 KOG0096|consensus 98.0 4.6E-06 1E-10 71.9 3.7 60 295-363 8-68 (216)
440 smart00177 ARF ARF-like small 98.0 1.8E-06 3.9E-11 75.3 1.2 53 297-362 13-65 (175)
441 TIGR00750 lao LAO/AO transport 98.0 3E-05 6.6E-10 73.7 8.9 104 89-225 126-238 (300)
442 KOG1532|consensus 98.0 9.9E-05 2.1E-09 67.5 11.6 115 90-227 116-266 (366)
443 cd04158 ARD1 ARD1 subfamily. 98.0 2.3E-06 4.9E-11 74.1 0.8 51 299-362 1-51 (169)
444 smart00053 DYNc Dynamin, GTPas 98.0 5.3E-05 1.2E-09 69.4 9.8 69 90-182 125-207 (240)
445 cd00876 Ras Ras family. The R 98.0 3E-06 6.6E-11 71.7 1.6 56 299-363 1-56 (160)
446 TIGR00231 small_GTP small GTP- 98.0 4.8E-06 1E-10 69.6 2.8 57 298-362 2-58 (161)
447 COG4108 PrfC Peptide chain rel 98.0 9.6E-05 2.1E-09 71.6 11.8 124 48-199 15-162 (528)
448 PF05049 IIGP: Interferon-indu 97.9 0.0002 4.3E-09 69.4 12.3 152 47-227 35-220 (376)
449 cd04154 Arl2 Arl2 subfamily. 97.9 5.9E-06 1.3E-10 71.6 1.6 54 296-362 13-66 (173)
450 cd04157 Arl6 Arl6 subfamily. 97.8 4.9E-06 1.1E-10 70.8 0.6 52 299-362 1-53 (162)
451 COG0050 TufB GTPases - transla 97.8 0.00014 3.1E-09 67.1 9.6 154 44-225 9-201 (394)
452 KOG1424|consensus 97.8 3.9E-05 8.4E-10 75.7 6.2 71 111-209 172-244 (562)
453 COG5258 GTPBP1 GTPase [General 97.8 0.00023 4.9E-09 68.0 11.0 158 44-227 114-340 (527)
454 KOG1486|consensus 97.8 0.0034 7.4E-08 57.0 17.8 197 18-225 29-288 (364)
455 cd04159 Arl10_like Arl10-like 97.8 9.8E-06 2.1E-10 68.2 1.5 51 300-362 2-52 (159)
456 cd04161 Arl2l1_Arl13_like Arl2 97.8 6.8E-06 1.5E-10 71.0 0.4 51 299-362 1-51 (167)
457 KOG1954|consensus 97.7 0.00024 5.2E-09 67.5 10.5 116 43-182 54-226 (532)
458 KOG1143|consensus 97.7 0.00021 4.5E-09 68.0 9.9 149 44-217 164-380 (591)
459 PF08477 Miro: Miro-like prote 97.7 1.1E-05 2.4E-10 65.2 1.0 56 299-362 1-58 (119)
460 PF03193 DUF258: Protein of un 97.7 1.9E-05 4E-10 67.7 2.4 33 189-221 2-34 (161)
461 cd04151 Arl1 Arl1 subfamily. 97.7 1E-05 2.2E-10 68.9 0.6 51 299-362 1-51 (158)
462 PF00735 Septin: Septin; Inte 97.7 0.00095 2.1E-08 62.8 13.7 134 47-206 4-182 (281)
463 cd01850 CDC_Septin CDC/Septin. 97.7 2.3E-05 4.9E-10 73.6 2.8 59 296-362 3-71 (276)
464 cd01900 YchF YchF subfamily. 97.7 0.00026 5.6E-09 66.2 9.5 72 51-124 2-103 (274)
465 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.6 2E-05 4.3E-10 68.5 1.6 54 297-363 15-68 (174)
466 cd04156 ARLTS1 ARLTS1 subfamil 97.6 2E-05 4.4E-10 67.0 0.8 52 299-362 1-52 (160)
467 KOG0467|consensus 97.6 0.00023 5.1E-09 73.1 8.5 77 51-127 15-109 (887)
468 cd00879 Sar1 Sar1 subfamily. 97.6 2.6E-05 5.6E-10 68.5 1.5 53 297-362 19-71 (190)
469 COG0012 Predicted GTPase, prob 97.5 0.0029 6.3E-08 60.8 14.0 162 48-209 3-248 (372)
470 PRK10463 hydrogenase nickel in 97.5 0.00086 1.9E-08 62.9 10.1 55 168-223 231-287 (290)
471 cd01891 TypA_BipA TypA (tyrosi 97.5 2.6E-05 5.6E-10 69.1 -0.1 56 299-362 4-73 (194)
472 KOG0082|consensus 97.4 0.00062 1.3E-08 65.3 8.8 132 73-228 182-347 (354)
473 smart00178 SAR Sar1p-like memb 97.4 6E-05 1.3E-09 66.2 1.6 53 297-362 17-69 (184)
474 KOG2486|consensus 97.4 0.00014 3E-09 66.8 3.5 150 43-222 132-313 (320)
475 cd01890 LepA LepA subfamily. 97.4 5.5E-05 1.2E-09 65.6 0.8 62 299-362 2-75 (179)
476 cd00878 Arf_Arl Arf (ADP-ribos 97.4 6.2E-05 1.4E-09 63.9 1.0 51 299-362 1-51 (158)
477 PRK04213 GTP-binding protein; 97.4 7.7E-05 1.7E-09 66.3 1.6 54 296-363 8-61 (201)
478 cd04160 Arfrp1 Arfrp1 subfamil 97.4 5.8E-05 1.3E-09 64.6 0.8 52 299-362 1-58 (167)
479 TIGR02528 EutP ethanolamine ut 97.3 3.6E-05 7.8E-10 64.2 -0.6 31 299-331 2-32 (142)
480 TIGR00993 3a0901s04IAP86 chlor 97.3 0.0011 2.5E-08 68.1 9.9 115 46-181 117-250 (763)
481 cd01857 HSR1_MMR1 HSR1/MMR1. 97.3 0.00043 9.2E-09 58.1 5.4 49 49-100 85-138 (141)
482 KOG2484|consensus 97.3 0.00023 4.9E-09 68.3 4.0 56 101-181 134-191 (435)
483 TIGR03598 GTPase_YsxC ribosome 97.3 0.0001 2.2E-09 64.3 1.4 58 295-363 16-73 (179)
484 PRK00454 engB GTP-binding prot 97.3 0.00011 2.3E-09 64.8 1.3 57 296-363 23-79 (196)
485 KOG1547|consensus 97.2 0.003 6.6E-08 56.9 10.2 53 48-100 47-114 (336)
486 KOG0073|consensus 97.2 0.00016 3.6E-09 61.0 2.1 55 294-361 13-67 (185)
487 cd04155 Arl3 Arl3 subfamily. 97.2 0.00015 3.2E-09 62.5 1.8 54 296-362 13-66 (173)
488 cd04171 SelB SelB subfamily. 97.2 0.00011 2.4E-09 62.4 0.8 55 299-362 2-59 (164)
489 cd01859 MJ1464 MJ1464. This f 97.1 0.0023 5E-08 54.4 8.4 51 47-100 101-156 (156)
490 PF00025 Arf: ADP-ribosylation 97.1 0.00012 2.7E-09 63.7 0.4 55 295-362 12-66 (175)
491 KOG2423|consensus 97.1 0.0016 3.5E-08 62.5 7.7 86 111-224 211-298 (572)
492 KOG0070|consensus 97.1 0.00057 1.2E-08 59.0 4.2 53 296-361 16-68 (181)
493 PF00503 G-alpha: G-protein al 97.1 0.0025 5.5E-08 62.8 9.1 94 62-179 201-315 (389)
494 KOG0469|consensus 97.1 0.0028 6E-08 62.6 9.0 128 41-193 15-176 (842)
495 PF03029 ATP_bind_1: Conserved 97.0 0.0007 1.5E-08 62.1 4.0 110 91-223 92-235 (238)
496 cd01856 YlqF YlqF. Proteins o 96.9 0.0019 4.2E-08 56.0 5.8 51 47-100 115-170 (171)
497 TIGR00450 mnmE_trmE_thdF tRNA 96.9 0.00049 1.1E-08 68.9 2.1 56 297-363 203-260 (442)
498 cd01897 NOG NOG1 is a nucleola 96.8 0.00043 9.3E-09 59.2 1.3 53 299-363 2-56 (168)
499 KOG0448|consensus 96.8 0.014 3.1E-07 59.9 12.0 66 92-182 208-276 (749)
500 KOG4273|consensus 96.8 0.015 3.3E-07 52.6 10.8 142 56-224 18-221 (418)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.1e-39 Score=278.59 Aligned_cols=164 Identities=38% Similarity=0.637 Sum_probs=153.5
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..|++++|+ |||||+.||.++.|.+. |+|+||..+.++++|+.++++||||+|||||+.+..+|||+|+|+|+|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~v 88 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFV 88 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEE
Confidence 456777776 99999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||+++++||+.+.+|+.++.+ +...++|.+|||||+|+.+. +.++.++++.|+..+++
T Consensus 89 yDiT~~~SF~~v~~Wi~Ei~~---------------------~~~~~v~~lLVGNK~Dl~~~-~~v~~~~a~~fa~~~~~ 146 (205)
T KOG0084|consen 89 YDITKQESFNNVKRWIQEIDR---------------------YASENVPKLLVGNKCDLTEK-RVVSTEEAQEFADELGI 146 (205)
T ss_pred EEcccHHHhhhHHHHHHHhhh---------------------hccCCCCeEEEeeccccHhh-eecCHHHHHHHHHhcCC
Confidence 999999999999999999988 56778999999999999887 89999999999999999
Q ss_pred e-EEEEcCCCCCCHHHHHHHHHHHcchhhccCC
Q psy18160 201 L-FMETSAKTAMNVNEIFVEIAKKLPKKEVNNG 232 (373)
Q Consensus 201 ~-~~evSak~~~gI~~lf~~L~~~i~~~~~~~~ 232 (373)
+ |+|+|||++.||+++|..|+..+..++....
T Consensus 147 ~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 147 PIFLETSAKDSTNVEDAFLTLAKELKQRKGLHV 179 (205)
T ss_pred cceeecccCCccCHHHHHHHHHHHHHHhcccCC
Confidence 9 9999999999999999999999987765433
No 2
>KOG0092|consensus
Probab=100.00 E-value=1.4e-38 Score=270.83 Aligned_cols=165 Identities=58% Similarity=0.865 Sum_probs=154.9
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..+|+|+||+ |||||+.||..+.|.+. |||..|..+.+.+++..++|.||||+|||+|.++.+.|||+|+++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 3579999998 99999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||+++.+||..++.|+.++.+ ...+++.+.|||||+||.+. |.|..++++.+|+..|
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~---------------------~~~~~~vialvGNK~DL~~~-R~V~~~ea~~yAe~~g 141 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQR---------------------QASPNIVIALVGNKADLLER-REVEFEEAQAYAESQG 141 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHh---------------------hCCCCeEEEEecchhhhhhc-ccccHHHHHHHHHhcC
Confidence 9999999999999999999988 55688999999999999886 8899999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhhccCC
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNG 232 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~ 232 (373)
+.|||+|||++.||+++|..|++.+........
T Consensus 142 ll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 142 LLFFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred CEEEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 999999999999999999999999987655433
No 3
>KOG0078|consensus
Probab=100.00 E-value=2.8e-37 Score=267.68 Aligned_cols=166 Identities=36% Similarity=0.607 Sum_probs=155.5
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
+....++++++|+ |||+|+.||..+.|... |+|+||..+++.+++..+.+++|||+|||+|+.+...||++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 4455677888887 99999999999999988 99999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||+++..||+++..|+..+.+ +..+++|++|||||+|+... |+|+.+.++++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e---------------------~a~~~v~~~LvGNK~D~~~~-R~V~~e~ge~lA~ 145 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDE---------------------HASDDVVKILVGNKCDLEEK-RQVSKERGEALAR 145 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHh---------------------hCCCCCcEEEeecccccccc-ccccHHHHHHHHH
Confidence 9999999999999999999999998 56679999999999999886 9999999999999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
++|++|+|+|||+|.||+++|..|++.+.++...
T Consensus 146 e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 146 EYGIKFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred HhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence 9999999999999999999999999999865544
No 4
>KOG0094|consensus
Probab=100.00 E-value=1.1e-36 Score=259.17 Aligned_cols=163 Identities=37% Similarity=0.633 Sum_probs=152.5
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
...|+|+||+ |||||++||..+.|... |||+||..+++.+.+..++|++|||+|||+|+.+.+.|+|+++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 4489999998 99999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++|..||++..+|++.+.+. ....++-++|||||.||.+. ++++.+|++..|++++
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e--------------------~gs~~viI~LVGnKtDL~dk-rqvs~eEg~~kAkel~ 159 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRE--------------------RGSDDVIIFLVGNKTDLSDK-RQVSIEEGERKAKELN 159 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhc--------------------cCCCceEEEEEcccccccch-hhhhHHHHHHHHHHhC
Confidence 99999999999999999999872 33446889999999999987 9999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
..|+++||+.|.||.++|..|+..+.....
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 999999999999999999999998876644
No 5
>KOG0394|consensus
Probab=100.00 E-value=3.7e-36 Score=253.53 Aligned_cols=174 Identities=34% Similarity=0.576 Sum_probs=157.5
Q ss_pred ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc
Q psy18160 39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR 112 (373)
Q Consensus 39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~ 112 (373)
|....+....+++++|+ |||||+|+|.+.+|... |||.+|..|.+.++++.+.++||||+|||+|.++.-.+||
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 34555667799999998 99999999999999988 9999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-CcccCHHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRCVEYSEG 191 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~v~~~e~ 191 (373)
+||++++|||+++++||+.+..|.+++.....+ ..+...|.||+|||.|+... .|+|+.+.+
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~-----------------~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A 143 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASP-----------------QDPETFPFVILGNKIDVDGGKSRQVSEKKA 143 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCC-----------------CCCCcccEEEEcccccCCCCccceeeHHHH
Confidence 999999999999999999999999998874433 34568999999999999763 488999999
Q ss_pred HHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 192 EAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 192 ~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
++|++..| +||||+|||...||+++|+.+++.+.....
T Consensus 144 q~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 144 QTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred HHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 99998876 899999999999999999999998876553
No 6
>KOG0098|consensus
Probab=100.00 E-value=5.5e-36 Score=252.90 Aligned_cols=161 Identities=40% Similarity=0.676 Sum_probs=153.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.+|++++|+ |||+|+.||+.+.|.+. |+|++|..+.+.++++.++++||||+|||.|+++.+.||++|.++|||
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 478888888 99999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++.++||..+..|+.+++. +..+++.++|+|||+||... |.|+.+|+++||+++|+
T Consensus 86 ydit~r~sF~hL~~wL~D~rq---------------------~~~~NmvImLiGNKsDL~~r-R~Vs~EEGeaFA~ehgL 143 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLEDARQ---------------------HSNENMVIMLIGNKSDLEAR-REVSKEEGEAFAREHGL 143 (216)
T ss_pred EEccchhhHHHHHHHHHHHHH---------------------hcCCCcEEEEEcchhhhhcc-ccccHHHHHHHHHHcCc
Confidence 999999999999999999988 45689999999999999876 89999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
.|+|+||++++||+|+|...+..+.++.+
T Consensus 144 ifmETSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 144 IFMETSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred eeehhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654
No 7
>KOG0080|consensus
Probab=100.00 E-value=2.7e-34 Score=236.69 Aligned_cols=162 Identities=35% Similarity=0.583 Sum_probs=150.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+.||+.+.|.+. |||+||..+.+.++|+.+++-||||+|||+|+.+.+.||++|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 4478888887 99999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++.+++|..+..|+.++..+ ...+++..++||||.|...+ |.|+.+|+.+||++++
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Y--------------------stn~diikmlVgNKiDkes~-R~V~reEG~kfAr~h~ 148 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLY--------------------STNPDIIKMLVGNKIDKESE-RVVDREEGLKFARKHR 148 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhh--------------------cCCccHhHhhhcccccchhc-ccccHHHHHHHHHhhC
Confidence 99999999999999999999874 34478889999999997665 8999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+-|+|+|||+.+||+..|++|+..|.+-.
T Consensus 149 ~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 149 CLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred cEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999987643
No 8
>KOG0079|consensus
Probab=100.00 E-value=6.6e-35 Score=237.08 Aligned_cols=158 Identities=31% Similarity=0.550 Sum_probs=148.9
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.+.+++|+ |||+|+.||..+.|..+ |+|+||..+++.++|..++++||||+|+|+|+.+...||++.+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 45677887 99999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|+++.+||.++.+|+++++. ..+.+|-+|||||.|+++. +.+..++++.||...|+.
T Consensus 89 DVTn~ESF~Nv~rWLeei~~----------------------ncdsv~~vLVGNK~d~~~R-rvV~t~dAr~~A~~mgie 145 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRN----------------------NCDSVPKVLVGNKNDDPER-RVVDTEDARAFALQMGIE 145 (198)
T ss_pred ECcchhhhHhHHHHHHHHHh----------------------cCccccceecccCCCCccc-eeeehHHHHHHHHhcCch
Confidence 99999999999999999987 4568899999999999876 889999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+||+|||.+.|++..|.-|.+++.+..
T Consensus 146 ~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 146 LFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred heehhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 9
>KOG0091|consensus
Probab=100.00 E-value=2.9e-34 Score=237.13 Aligned_cols=164 Identities=32% Similarity=0.555 Sum_probs=148.6
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..+.+++|+ |||||+++|+.++|.+- |+|+||+.+.+++ +|..+++++|||+|||+|+++.+.||+++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 368899998 99999999999999877 9999999998888 6789999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++|++||+++..|+.+...+. ..+..+..+|||+|+||... |+|+.+|++++|+.+|
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~-------------------q~P~k~VFlLVGhKsDL~Sq-RqVt~EEaEklAa~hg 147 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMAT-------------------QGPDKVVFLLVGHKSDLQSQ-RQVTAEEAEKLAASHG 147 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhc-------------------CCCCeeEEEEeccccchhhh-ccccHHHHHHHHHhcC
Confidence 999999999999999999987631 12345668899999999877 9999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
+.|+|+||++|.||++.|.-|++.+..+..+
T Consensus 148 M~FVETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 148 MAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred ceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988765443
No 10
>KOG0087|consensus
Probab=100.00 E-value=3.1e-33 Score=241.35 Aligned_cols=163 Identities=39% Similarity=0.618 Sum_probs=151.1
Q ss_pred CCCc-EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 44 QSDC-MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 44 ~~~~-i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
.+++ .|+|++|+ |||-|+.||..++|... |||++|..+.+.++++.++.+||||+|||+|+++...||++|.|
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 4455 45556665 99999999999999988 99999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++.+.+|+++.+||.+++. +..++++++|||||+||.+. |.|+.++++.+|+
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRd---------------------had~nivimLvGNK~DL~~l-raV~te~~k~~Ae 147 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRD---------------------HADSNIVIMLVGNKSDLNHL-RAVPTEDGKAFAE 147 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHh---------------------cCCCCeEEEEeecchhhhhc-cccchhhhHhHHH
Confidence 9999999999999999999999988 66789999999999999885 8999999999999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
..++.|+|+||.++.||+++|+.++..|.+.-
T Consensus 148 ~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 148 KEGLFFLETSALDATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred hcCceEEEecccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887543
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.5e-32 Score=245.64 Aligned_cols=157 Identities=35% Similarity=0.600 Sum_probs=143.0
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
.++++|+ |||||++||..+.|... |+|.++..+.+.+++..+.+++|||+|+++|..++..|++++|++|+|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 4788887 99999999999999775 99999998999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc-CCe
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN-GLL 201 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~-~~~ 201 (373)
+++++||+++..|+..+.. ....++|++|||||+|+... +.+..++++++++.+ ++.
T Consensus 82 vtd~~Sf~~l~~w~~~i~~---------------------~~~~~~piilVgNK~DL~~~-~~v~~~~~~~~a~~~~~~~ 139 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDK---------------------YASEDAELLLVGNKLDCETD-REISRQQGEKFAQQITGMR 139 (202)
T ss_pred CcCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cccCHHHHHHHHHhcCCCE
Confidence 9999999999999988766 33467999999999999765 778899999999885 789
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
|+++||++|.||+++|++|++.+.+.
T Consensus 140 ~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 140 FCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999888654
No 12
>KOG0093|consensus
Probab=100.00 E-value=2.6e-33 Score=227.60 Aligned_cols=163 Identities=31% Similarity=0.542 Sum_probs=149.9
Q ss_pred CCcE-EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 45 SDCM-AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 45 ~~~i-~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
.+++ |+.++|+ |||||+.|++++.|.+. |.|++|..|++.-.++++.+++|||+|+|+|+.+...||++|+++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 3444 5566666 99999999999999988 999999999998888999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
|++||++|.+||..++.|...+.. ....++|+||||||||+.++ |.++.+.++.++.+
T Consensus 98 iLmyDitNeeSf~svqdw~tqIkt---------------------ysw~naqvilvgnKCDmd~e-Rvis~e~g~~l~~~ 155 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKT---------------------YSWDNAQVILVGNKCDMDSE-RVISHERGRQLADQ 155 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHhee---------------------eeccCceEEEEecccCCccc-eeeeHHHHHHHHHH
Confidence 999999999999999999998877 45679999999999999887 99999999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+|+.|||+|||.+.||+++|+.++..+-+++.
T Consensus 156 LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 156 LGFEFFETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred hChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988876554
No 13
>KOG0086|consensus
Probab=100.00 E-value=1.7e-33 Score=230.01 Aligned_cols=161 Identities=36% Similarity=0.633 Sum_probs=150.3
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||+|+++|+..+|.+. |+|++|..+.+.+.++.++++||||+|||+|++..+.||++|.++++||
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 56666665 99999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|+++++||+.+..|+..++. ...+++.++++|||.||..+ |+|+..|+.+|+.+..+.
T Consensus 90 D~TsrdsfnaLtnWL~DaR~---------------------lAs~nIvviL~GnKkDL~~~-R~VtflEAs~FaqEnel~ 147 (214)
T KOG0086|consen 90 DITSRDSFNALTNWLTDART---------------------LASPNIVVILCGNKKDLDPE-REVTFLEASRFAQENELM 147 (214)
T ss_pred eccchhhHHHHHHHHHHHHh---------------------hCCCcEEEEEeCChhhcChh-hhhhHHHHHhhhccccee
Confidence 99999999999999999988 56789999999999999887 899999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
+.|+||++|+||+|.|-..++.+..+-+.
T Consensus 148 flETSa~TGeNVEEaFl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKCARTILNKIES 176 (214)
T ss_pred eeeecccccccHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999888766543
No 14
>KOG0088|consensus
Probab=100.00 E-value=1.9e-33 Score=231.02 Aligned_cols=160 Identities=38% Similarity=0.635 Sum_probs=148.9
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
-.+++|++|. |||||+-||+.++|... |+-..|..+.+.+.+....+.||||+|||+|..+.+.||++++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 4578888886 99999999999999988 88889999999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++|++||+.++.|..+++. .....+.++|||||.||.++ |.|+.++++++|+..|
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~---------------------mlGnei~l~IVGNKiDLEee-R~Vt~qeAe~YAesvG 149 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRT---------------------MLGNEIELLIVGNKIDLEEE-RQVTRQEAEAYAESVG 149 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHH---------------------HhCCeeEEEEecCcccHHHh-hhhhHHHHHHHHHhhc
Confidence 9999999999999999999887 45567899999999999877 9999999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
..|+++||+.+.||.++|+.|...+.+.
T Consensus 150 A~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 150 ALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred hhheecccccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877654
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=8.3e-32 Score=238.64 Aligned_cols=161 Identities=30% Similarity=0.479 Sum_probs=146.7
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|+ |||||+++|.++.|... |++.++..+.+.+++..+.+++|||+|+++|..+++.+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999998 99999999999988765 78888888889999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.||+++..|+.++.. . .+++|++|||||+|+.+. +.++.++++++++.++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~---------------------~-~~~~piilVGNK~DL~~~-~~v~~~~~~~~a~~~~ 141 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDE---------------------H-APGVPKILVGNRLHLAFK-RQVATEQAQAYAERNG 141 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEECccchhc-cCCCHHHHHHHHHHcC
Confidence 9999999999999999999876 2 257999999999999765 6789999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
++|+|+||++|.||+++|++|++.+..+..
T Consensus 142 ~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 142 MTFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988875443
No 16
>KOG0095|consensus
Probab=100.00 E-value=9.6e-33 Score=224.80 Aligned_cols=162 Identities=33% Similarity=0.611 Sum_probs=146.2
Q ss_pred CCCcE-EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 44 QSDCM-AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 44 ~~~~i-~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
+++.. ++|++|. |||+|++||..+-|.+. |+|++|..++++++++.++++||||+|||+|+++...||+.|++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 34444 5555554 99999999999999988 99999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+|+|||++-.+||+-+.+|+.+++. +....+-.|+||||.|+.+. |.++...+++|++
T Consensus 83 lilvydiscqpsfdclpewlreie~---------------------yan~kvlkilvgnk~d~~dr-revp~qigeefs~ 140 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQ---------------------YANNKVLKILVGNKIDLADR-REVPQQIGEEFSE 140 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHH---------------------HhhcceEEEeeccccchhhh-hhhhHHHHHHHHH
Confidence 9999999999999999999999998 34567778999999999876 7899999999999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
...+-|.|+||+..+||+.||..++.++...
T Consensus 141 ~qdmyfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 141 AQDMYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred hhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 9888899999999999999999988776543
No 17
>KOG0083|consensus
Probab=99.98 E-value=3.5e-33 Score=223.32 Aligned_cols=156 Identities=37% Similarity=0.657 Sum_probs=145.8
Q ss_pred EEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC
Q psy18160 52 WLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT 124 (373)
Q Consensus 52 vlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~ 124 (373)
++|+ |||+|+-||..+.|... |+|.+|..+.+.++++.+++++|||+|||+|++....||+.||+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 5677 99999999999988876 9999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160 125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME 204 (373)
Q Consensus 125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e 204 (373)
++.||++++.|+.++.+ +....+.+.++|||+|+..+ |.+..++++++++.+++||.|
T Consensus 82 nkasfdn~~~wlsei~e---------------------y~k~~v~l~llgnk~d~a~e-r~v~~ddg~kla~~y~ipfme 139 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHE---------------------YAKEAVALMLLGNKCDLAHE-RAVKRDDGEKLAEAYGIPFME 139 (192)
T ss_pred cchhHHHHHHHHHHHHH---------------------HHHhhHhHhhhccccccchh-hccccchHHHHHHHHCCCcee
Confidence 99999999999999998 45567889999999999776 889999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 205 TSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 205 vSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+|||+|.||+..|..|++++.+..-
T Consensus 140 tsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 140 TSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred ccccccccHhHHHHHHHHHHHHhcc
Confidence 9999999999999999999876543
No 18
>KOG0097|consensus
Probab=99.97 E-value=3.4e-31 Score=214.01 Aligned_cols=160 Identities=39% Similarity=0.675 Sum_probs=149.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++.+++|+ |||+|+++|...+|... |+|++|..+.+++.|..++++||||+|||+|+...+.||+++.+.+.|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 356677777 99999999999999888 999999999999999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++.+.++.++..|+...+. ...++..++++|||.||..+ |.++.+++.+|++++|+
T Consensus 91 yditrrstynhlsswl~dar~---------------------ltnpnt~i~lignkadle~q-rdv~yeeak~faeengl 148 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARN---------------------LTNPNTVIFLIGNKADLESQ-RDVTYEEAKEFAEENGL 148 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhc---------------------cCCCceEEEEecchhhhhhc-ccCcHHHHHHHHhhcCe
Confidence 999999999999999988877 45688999999999999877 88999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
.|.|+|||+|.||++.|.+.++++.+.-
T Consensus 149 ~fle~saktg~nvedafle~akkiyqni 176 (215)
T KOG0097|consen 149 MFLEASAKTGQNVEDAFLETAKKIYQNI 176 (215)
T ss_pred EEEEecccccCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988887653
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=1.1e-30 Score=228.90 Aligned_cols=155 Identities=29% Similarity=0.525 Sum_probs=138.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|+ |||||+.||+.+.|... |++..+ .+.+.+++..+.++||||+|+++|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 68999998 99999999999999865 888776 567888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC---------cccCHHHH
Q psy18160 122 DITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR---------RCVEYSEG 191 (373)
Q Consensus 122 D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~---------~~v~~~e~ 191 (373)
|+++++||+++ ..|+..+.. . .+++|++|||||+|+.+.. +.++.+++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~---------------------~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~ 138 (176)
T cd04133 81 SLISRASYENVLKKWVPELRH---------------------Y-APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQG 138 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHH
Confidence 99999999998 689988866 2 2579999999999996541 34889999
Q ss_pred HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 192 EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 192 ~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++++.+++ .|+|+||++|.||+++|+.+++.+.
T Consensus 139 ~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 139 EELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred HHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 999999998 6999999999999999999998764
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=1.5e-30 Score=229.35 Aligned_cols=157 Identities=26% Similarity=0.448 Sum_probs=139.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|+ |||||++||..+.|... |++.++ .+.+.+++..+.++||||+|+++|..+++.+++++|++++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 4578999998 99999999999999776 888766 4778899999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160 120 VYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE 187 (373)
Q Consensus 120 v~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~ 187 (373)
|||++++.||+++ ..|+..+.. . .+++|++|||||+||.+. .+.++
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~---------------------~-~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~ 140 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQE---------------------F-CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVS 140 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH---------------------H-CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCC
Confidence 9999999999997 789998876 2 257899999999999641 24689
Q ss_pred HHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHcc
Q psy18160 188 YSEGEAYAEENGL-LFMETSAKTAMN-VNEIFVEIAKKLP 225 (373)
Q Consensus 188 ~~e~~~~~~~~~~-~~~evSak~~~g-I~~lf~~L~~~i~ 225 (373)
.++++++|+.+++ +|+||||++|.| |+++|..+++...
T Consensus 141 ~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 141 YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 9999999999995 899999999998 9999999887543
No 21
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=6.1e-30 Score=229.02 Aligned_cols=163 Identities=26% Similarity=0.461 Sum_probs=143.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
++++++|. |||||+++|+++.|... |+|.++..+.+.++ +..+.+.+|||+|+++|..+++.+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 47899998 99999999999988765 99999988888888 8899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC-
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG- 199 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~- 199 (373)
||+++++||+.+..|+..+..... .....++|++|||||+|+.+. +.+..+++.++++..+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~-----------------~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~ 142 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVT-----------------LPNGEPIPCLLLANKCDLKKR-LAKDGEQMDQFCKENGF 142 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhc-----------------ccCCCCCcEEEEEECCCcccc-cccCHHHHHHHHHHcCC
Confidence 999999999999999988865210 012367899999999999754 6688899999999998
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
.+|+++||++|.||+++|++|++.+.+..
T Consensus 143 ~~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 143 IGWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999887653
No 22
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=7.7e-30 Score=226.62 Aligned_cols=157 Identities=24% Similarity=0.434 Sum_probs=137.5
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|+ |||||++||..+.|... |++..+ .+.+.+++..+.++||||+|+++|..+++.|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 378999998 99999999999999665 888665 45677899999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCH
Q psy18160 121 YDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEY 188 (373)
Q Consensus 121 ~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~ 188 (373)
||++++.||+++. .|+..+.. ..+++|++|||||+||.+.. +.++.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~----------------------~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~ 139 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCH----------------------HCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITP 139 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCH
Confidence 9999999999997 58877765 12579999999999996541 24677
Q ss_pred HHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 189 SEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 189 ~e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++++++.++ ++|+|+||++|.||+++|++|++.+..
T Consensus 140 ~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 140 QQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 89999999998 599999999999999999999988763
No 23
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.5e-30 Score=225.02 Aligned_cols=155 Identities=27% Similarity=0.474 Sum_probs=137.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|+ |||||+++|.++.|... |++.++ .+.+.+++..+.+++|||+|+++|..+++.+++++|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 68999998 99999999999998766 887776 467889999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160 122 DITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS 189 (373)
Q Consensus 122 D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~ 189 (373)
|+++++||+++ ..|+..+.+ . .+++|++|||||+||.++ .+.++.+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~---------------------~-~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~ 138 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQE---------------------F-CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYE 138 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHH---------------------H-CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHH
Confidence 99999999996 789988876 2 257899999999999641 2468999
Q ss_pred HHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHcc
Q psy18160 190 EGEAYAEENGL-LFMETSAKTAMN-VNEIFVEIAKKLP 225 (373)
Q Consensus 190 e~~~~~~~~~~-~~~evSak~~~g-I~~lf~~L~~~i~ 225 (373)
+++++|+.+++ +|+|+||++|+| |+++|..+++...
T Consensus 139 e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 139 QGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 99999999997 899999999995 9999999988543
No 24
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=6.1e-30 Score=231.53 Aligned_cols=179 Identities=27% Similarity=0.419 Sum_probs=145.3
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
++++++|. |||||+++|+.++|... |+|.++..+.+ ..+.+.||||+|+++|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 47889997 99999999999998765 88877755443 46789999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC------------------CCc
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT------------------SRR 184 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~------------------~~~ 184 (373)
+++++||+++..|+..+.+ ...+++|++|||||+|+.+ ..+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~---------------------~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r 135 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTD---------------------TANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQR 135 (220)
T ss_pred CCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccccccccccccccccccccccc
Confidence 9999999999988777665 2345789999999999965 137
Q ss_pred ccCHHHHHHHHHHcC--------------CeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCC---Ccccc-ccCCCC
Q psy18160 185 CVEYSEGEAYAEENG--------------LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGG---RRLVE-TAEAPK 246 (373)
Q Consensus 185 ~v~~~e~~~~~~~~~--------------~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~---~~~~~-~~~~~~ 246 (373)
.++.++++++|++.+ ++|+|+||++|.||+++|..+++.+.........+. +-.+. ..+..+
T Consensus 136 ~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (220)
T cd04126 136 QVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRS 215 (220)
T ss_pred cCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccC
Confidence 899999999999876 689999999999999999999988765433222211 11222 345667
Q ss_pred CCCCC
Q psy18160 247 TSNCC 251 (373)
Q Consensus 247 ~~~cc 251 (373)
+++||
T Consensus 216 ~~~~~ 220 (220)
T cd04126 216 KSKCC 220 (220)
T ss_pred CCCCC
Confidence 78888
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.1e-29 Score=220.07 Aligned_cols=156 Identities=40% Similarity=0.693 Sum_probs=142.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|++++|... |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 68899997 99999999999998776 8888888888899999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|+++++||+.+..|+..+.. ...++.|+++||||+|+... +.++.+++.++++..+++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 140 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARN---------------------LTNPNTVIFLIGNKADLEAQ-RDVTYEEAKQFADENGLL 140 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cCcCHHHHHHHHHHcCCE
Confidence 99999999999999988866 33467899999999999765 668888999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++||++|.||+++|.++++.+.
T Consensus 141 ~~e~Sa~~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 141 FLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998775
No 26
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.7e-29 Score=223.51 Aligned_cols=181 Identities=28% Similarity=0.509 Sum_probs=154.1
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|.++.|... |+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 47899998 99999999999999863 8888888888999999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+|+.+..|+..+.. .....+|+++||||+|+.+. +.++.+++..+++..+++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~---------------------~~~~~~~~ivv~nK~Dl~~~-~~v~~~~~~~~~~~~~~~ 138 (188)
T cd04125 81 DVTDQESFENLKFWINEINR---------------------YARENVIKVIVANKSDLVNN-KVVDSNIAKSFCDSLNIP 138 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECCCCccc-ccCCHHHHHHHHHHcCCe
Confidence 99999999999999998876 23456899999999999765 667888889999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNT 253 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~ 253 (373)
++++||+++.|++++|++|++.+.++....... ..+.....++++||+.
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLIIKRLEEQELS---PKNIKQQFKKKNNCFI 187 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhcCcCC---ccccccccccccCccc
Confidence 999999999999999999999987654433222 1233444566777754
No 27
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=9.9e-30 Score=231.59 Aligned_cols=161 Identities=24% Similarity=0.413 Sum_probs=142.1
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|+ |||||+++|+.+.|... |++.++. +.+.+++..+.++||||+|+++|..+++.++++||++++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 4579999998 99999999999999876 8887774 568889999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160 120 VYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE 187 (373)
Q Consensus 120 v~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~ 187 (373)
|||+++++||+.+ ..|+.++.. . .+++|++|||||+||.+. .+.++
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~---------------------~-~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs 148 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMD---------------------Y-CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPIS 148 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEECcccccccchhhhhccccCCcCC
Confidence 9999999999985 789998876 1 257899999999999642 25689
Q ss_pred HHHHHHHHHHcCC-eEEEEcCCCCC-CHHHHHHHHHHHcchhhc
Q psy18160 188 YSEGEAYAEENGL-LFMETSAKTAM-NVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 188 ~~e~~~~~~~~~~-~~~evSak~~~-gI~~lf~~L~~~i~~~~~ 229 (373)
.++++++|+.+++ .|+||||++|. ||+++|..++..+.++..
T Consensus 149 ~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 149 YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 9999999999998 69999999998 899999999998875433
No 28
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=2e-29 Score=225.33 Aligned_cols=183 Identities=28% Similarity=0.534 Sum_probs=153.7
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|+ |||||+++|++..|... |++.++..+.+.+++..+.+.|||++|+++|..++..+++++|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4689999998 99999999999988754 88888888888889989999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||+++++||+.+..|+..+.. ..+.+|++|||||+|+.+. +.+..+++.++++..+
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~----------------------~~~~~piivVgNK~Dl~~~-~~~~~~~~~~~~~~~~ 141 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQ----------------------NCDDVCKVLVGNKNDDPER-KVVETEDAYKFAGQMG 141 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEECcccccc-cccCHHHHHHHHHHcC
Confidence 9999999999999999998866 2357899999999999764 5677888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCC-----CCCcccc-ccCCCCCCCCC
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ-----GGRRLVE-TAEAPKTSNCC 251 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~-----~~~~~~~-~~~~~~~~~cc 251 (373)
.+++++||++|.||+++|++|++.+......... ....... ....+++++||
T Consensus 142 ~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 142 ISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred CEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 9999999999999999999999988764332221 1111112 33457778888
No 29
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.8e-29 Score=224.23 Aligned_cols=182 Identities=36% Similarity=0.654 Sum_probs=153.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
++++++|. |||||+++|.+++|... |++.++..+.+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 37889997 99999999999998642 888888777888999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++++|+++..|+..+.. ....++|+++||||+|+... +.+..+++..+++.++.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piiiv~NK~Dl~~~-~~~~~~~~~~l~~~~~~ 138 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKE---------------------YAQEDVVIMLLGNKADMSGE-RVVKREDGERLAKEYGV 138 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEEcccchhc-cccCHHHHHHHHHHcCC
Confidence 999999999999999988877 33457899999999999754 66778889999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCcccc--ccCCCCCCCCC
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVE--TAEAPKTSNCC 251 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~cc 251 (373)
+|+++||++|.|++++|++|++.+.......+....-..+ .+..++.++||
T Consensus 139 ~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 139 PFMETSAKTGLNVELAFTAVAKELKHRKYEQPDEGKFKISDYVTKQKKISRCC 191 (191)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHhccccCCCCcEEeccccCcccccCCCC
Confidence 9999999999999999999999987664432222221121 35667788888
No 30
>KOG0081|consensus
Probab=99.97 E-value=1.8e-31 Score=219.50 Aligned_cols=163 Identities=28% Similarity=0.443 Sum_probs=149.3
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC---------CEEEEEEEEeCCCcccccccchhhc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD---------DVTIRFEIWDTAGQERYHTLAPMYY 111 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~---------~~~v~l~i~Dt~G~e~~~~l~~~~~ 111 (373)
.|+.+++|+ ||||++.+|..++|... |+|+||..|.+.++ +.++.+++|||+|||+|+++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 367788898 99999999999999988 99999999999884 3678999999999999999999999
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
++|-+++++||+++..||-++..|+.+++.+ ...+++-|+++|||+||.+. |.|+.+++
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h--------------------AYcE~PDivlcGNK~DL~~~-R~Vs~~qa 147 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH--------------------AYCENPDIVLCGNKADLEDQ-RVVSEDQA 147 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHh--------------------hccCCCCEEEEcCccchhhh-hhhhHHHH
Confidence 9999999999999999999999999999874 34567789999999999887 89999999
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
.++|+++|+||||+||.+|.||++..+.|+..+.++.++
T Consensus 148 ~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 148 AALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888876553
No 31
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=5.8e-29 Score=225.25 Aligned_cols=160 Identities=38% Similarity=0.587 Sum_probs=145.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|.+..+... |+|.++..+.+.+++..+.++||||+|+++|..++..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 4578999998 99999999999988755 99999999999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+|+.+..|+..+.. ....++|+++||||+|+... +.++.+++..++..++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~l~~~~~ 148 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRD---------------------HADSNIVIMMAGNKSDLNHL-RSVAEEDGQALAEKEG 148 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEEChhcccc-cCCCHHHHHHHHHHcC
Confidence 9999999999999999998876 33457999999999999765 6688888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
++++++||++|.|++++|+.|++.+.+.
T Consensus 149 ~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 149 LSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888653
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=2.4e-29 Score=219.68 Aligned_cols=160 Identities=28% Similarity=0.435 Sum_probs=141.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|+ |||||+++|..++|... |++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 68999998 99999999999999765 777555 466888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.||+.+..|+..+.+. ...+++|++|||||+|+.+. +.++.++++++++.++++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~--------------------~~~~~~piilvgNK~Dl~~~-~~v~~~~~~~~a~~~~~~ 140 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRV--------------------RLTEDIPLVLVGNKVDLESQ-RQVTTEEGRNLAREFNCP 140 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEEChhhhhc-CccCHHHHHHHHHHhCCE
Confidence 999999999999998877662 12357999999999999765 678899999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
|+++||++|.||+++|++|++.+.++..
T Consensus 141 ~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 168 (172)
T cd04141 141 FFETSAALRHYIDDAFHGLVREIRRKES 168 (172)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988875433
No 33
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3.4e-29 Score=222.22 Aligned_cols=182 Identities=29% Similarity=0.428 Sum_probs=146.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|. |||||+++|+.+.|... |++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 4788887 99999999999988765 666554 4567788889999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~ 202 (373)
++++.||+.+..|+..+..... ....++|++|||||+|+... +.++.+++.++++.++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~------------------~~~~~~piilvgNK~Dl~~~-~~v~~~~~~~~~~~~~~~~ 140 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKD------------------ESAADVPIMIVGNKCDKVYE-REVSTEEGAALARRLGCEF 140 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc------------------ccCCCCCEEEEEEChhcccc-CccCHHHHHHHHHHhCCEE
Confidence 9999999999999988876210 11357899999999999765 6678888889999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCC
Q psy18160 203 METSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC 251 (373)
Q Consensus 203 ~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc 251 (373)
+++||++|.||+++|+++++.+.++.... .++.........+++.+||
T Consensus 141 ~e~SAk~~~~v~~l~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 141 IEASAKTNVNVERAFYTLVRALRQQRQGG-QGPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhccc-CCCcCCCCCcccccccCce
Confidence 99999999999999999998876544332 2222222233444455555
No 34
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=5.6e-29 Score=214.86 Aligned_cols=153 Identities=34% Similarity=0.586 Sum_probs=139.7
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|. |||||+++|.++.|.+. |++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence 6888887 99999999999999775 88888888889999989999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~ 202 (373)
+++++||+.+..|+..+.. ....++|+++||||.|+.+. +.+..+++..+++.++.+|
T Consensus 82 ~~~~~sf~~~~~~~~~~~~---------------------~~~~~~~iilvgnK~Dl~~~-~~v~~~~~~~~~~~~~~~~ 139 (161)
T cd04117 82 ISSERSYQHIMKWVSDVDE---------------------YAPEGVQKILIGNKADEEQK-RQVGDEQGNKLAKEYGMDF 139 (161)
T ss_pred CCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cCCCHHHHHHHHHHcCCEE
Confidence 9999999999999988876 23357899999999999765 6788899999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHH
Q psy18160 203 METSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 203 ~evSak~~~gI~~lf~~L~~~ 223 (373)
+|+||++|.||+++|.+|++.
T Consensus 140 ~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 140 FETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHhh
Confidence 999999999999999999865
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=8e-29 Score=213.29 Aligned_cols=155 Identities=35% Similarity=0.634 Sum_probs=144.4
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
|++++|+ |||||+++|.++.|... |+|.++..+.+.+++..+.+++||++|+++|..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899998 99999999999998877 88899999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~ 202 (373)
+++++||+.+..|+..+.. ....++|++|||||+|+.+. +.++.++++++++.++.+|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~---------------------~~~~~~~iivvg~K~D~~~~-~~v~~~~~~~~~~~~~~~~ 138 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQK---------------------YKPEDIPIIVVGNKSDLSDE-REVSVEEAQEFAKELGVPY 138 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHH---------------------HSTTTSEEEEEEETTTGGGG-SSSCHHHHHHHHHHTTSEE
T ss_pred ccccccccccccccccccc---------------------cccccccceeeecccccccc-ccchhhHHHHHHHHhCCEE
Confidence 9999999999999999987 23357999999999999774 7899999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 203 METSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 203 ~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+|+||+++.||.++|..+++.+.
T Consensus 139 ~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 139 FEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEBTTTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 36
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=8.5e-29 Score=218.27 Aligned_cols=157 Identities=22% Similarity=0.358 Sum_probs=136.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|+ |||||++||+++.|... |+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 47899998 99999999999999775 9999998889999999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC----CcccCHHHHHHHHHH
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS----RRCVEYSEGEAYAEE 197 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~----~~~v~~~e~~~~~~~ 197 (373)
|++++.||+++.+|+..+.. .....+| ++||||+|+... .+....++++++++.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~---------------------~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~ 138 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARG---------------------FNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA 138 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHH---------------------hCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH
Confidence 99999999999999998876 2234567 688999999521 111224677889999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++++++||++|.||+++|+++++.+.+
T Consensus 139 ~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 139 MKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988864
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=1.7e-28 Score=212.46 Aligned_cols=156 Identities=30% Similarity=0.542 Sum_probs=140.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|.+++|... |+|.++..+.+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 58899998 99999999999998765 8888888788888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++++|+.+.+|+..+.. ....++|+++||||+|+.+. +.+..+++.++++.++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 139 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKT---------------------YSWDNAQVILVGNKCDMEDE-RVVSSERGRQLADQLGFE 139 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCCEEEEEECcccCcc-cccCHHHHHHHHHHcCCE
Confidence 99999999999999998866 33457899999999999765 567788888999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++||+++.|++++|++|++.+.
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 140 FFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 38
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=1.8e-28 Score=212.80 Aligned_cols=158 Identities=37% Similarity=0.663 Sum_probs=143.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|.++.|.+. |++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 478999998 99999999999998876 888888888888999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+|+.+.+|+..+.. ....++|+++||||+|+.+. +.+..+++.++++.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 140 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEE---------------------HASEDVERMLVGNKCDMEEK-RVVSKEEGEALADEYGI 140 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cCCCHHHHHHHHHHcCC
Confidence 999999999999999998876 33467899999999999865 66788889999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+++++||++|.||+++|+++++.+.+
T Consensus 141 ~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 141 KFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988753
No 39
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=1.7e-28 Score=215.05 Aligned_cols=154 Identities=22% Similarity=0.387 Sum_probs=134.9
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|+ |||||+++|..+.|... |++.++ .+.+.+++..+.++||||+|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 68999998 99999999999999655 887766 456788899999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160 122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS 189 (373)
Q Consensus 122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~ 189 (373)
|+++++||+.+. .|+..+.. ..+++|++|||||+|+.+. .+.++.+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~----------------------~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~ 138 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITH----------------------HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE 138 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHH
Confidence 999999999997 58888765 1257899999999998643 2568889
Q ss_pred HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+++++++..+ +.|+|+||++|.||+++|+.++...
T Consensus 139 ~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 139 TGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 9999999887 6899999999999999999998743
No 40
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=2.7e-28 Score=220.67 Aligned_cols=161 Identities=25% Similarity=0.400 Sum_probs=142.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC-EEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD-VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~-~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
++++++|. |||||+++|+++.|... |++.+++.+.+.+++ ..+.++||||+|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 47889997 99999999999988766 999999888888865 578999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||+++++||+.+..|+..+.+... ....++|+++||||+|+.+. +.+..+++.++++.+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~------------------~~~~~~piilVgNK~DL~~~-~~v~~~~~~~~~~~~~~ 141 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLK------------------SSETQPLVVLVGNKTDLEHN-RTVKDDKHARFAQANGM 141 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcc------------------ccCCCceEEEEEECcccccc-cccCHHHHHHHHHHcCC
Confidence 999999999999999999877211 11246789999999999755 67888899999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++||++|.||+++|++|++.+...
T Consensus 142 ~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 142 ESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999988654
No 41
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=1.9e-28 Score=214.94 Aligned_cols=160 Identities=29% Similarity=0.477 Sum_probs=141.7
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC----------CEEEEEEEEeCCCcccccccchh
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD----------DVTIRFEIWDTAGQERYHTLAPM 109 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~----------~~~v~l~i~Dt~G~e~~~~l~~~ 109 (373)
..++++++|+ |||||+++|.++.|... |++.++..+.+.++ +..+.++||||+|+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 3489999998 99999999999988876 88888877777664 45789999999999999999999
Q ss_pred hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
+++++|++++|||+++++||.++..|+..+... ...+++|++|||||+|+.+. +.++.+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiiv~nK~Dl~~~-~~v~~~ 141 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH--------------------AYCENPDIVLCGNKADLEDQ-RQVSEE 141 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEeCccchhc-CccCHH
Confidence 999999999999999999999999999988762 12357899999999999765 668888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++.++++..+++++++||++|.|++++|++|++.+.+
T Consensus 142 ~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 142 QAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999987753
No 42
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=5.2e-28 Score=214.82 Aligned_cols=159 Identities=35% Similarity=0.611 Sum_probs=140.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcC--c--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYP--Y--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~--~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
++++++|. |||||+++|+++.|.. . |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 37899998 9999999999999875 2 888888888899999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC---CcccCHHHHHHHHHH
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS---RRCVEYSEGEAYAEE 197 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~---~~~v~~~e~~~~~~~ 197 (373)
||++++.+|+++..|+..+.. ..+++|++||+||+|+.+. .+.+..+++.+++..
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~ 138 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQN----------------------LEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE 138 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHh----------------------cCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH
Confidence 999999999999999988866 1247899999999998542 245666788889988
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
.+.+++++||+++.|++++|++|++.+.+..
T Consensus 139 ~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 139 IKAQHFETSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999887543
No 43
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=5.2e-28 Score=218.21 Aligned_cols=161 Identities=30% Similarity=0.549 Sum_probs=143.9
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
++++++|+ |||||+++|+++.|... |+|.++..+.+.+ ++..+.+++|||+|++++..++..+++++|++++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 68999998 99999999999998775 8888998888887 46789999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||+++++||+++.+|+..+... .....+|++|||||+|+... +.+..+++.++++.+++
T Consensus 83 ~D~~~~~Sf~~l~~~~~~i~~~--------------------~~~~~~~iilvgNK~Dl~~~-~~v~~~~~~~~~~~~~~ 141 (211)
T cd04111 83 FDITNRESFEHVHDWLEEARSH--------------------IQPHRPVFILVGHKCDLESQ-RQVTREEAEKLAKDLGM 141 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCeEEEEEEccccccc-cccCHHHHHHHHHHhCC
Confidence 9999999999999999988762 12346789999999999765 67888899999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+|+++||++|.||+++|+.|++.+.+...
T Consensus 142 ~~~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 142 KYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998876644
No 44
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=3.4e-28 Score=215.63 Aligned_cols=161 Identities=29% Similarity=0.448 Sum_probs=141.8
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|+++.|... |++.++ .+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 479999998 99999999999988755 777666 57788899999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++++|+.+..|+..+.+. ...+++|+++|+||+|+.+. +.++.+++.++++.++.
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiiv~nK~Dl~~~-~~i~~~~~~~~~~~~~~ 142 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRV--------------------KDKDRVPMILVGNKCDLDSE-RQVSTGEGQELAKSFGI 142 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-cccCHHHHHHHHHHhCC
Confidence 9999999999999999888762 12357899999999998654 66788888899998899
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+++++||++|.||+++|++|++.+.+...
T Consensus 143 ~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 143 PFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998875533
No 45
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=5.5e-28 Score=209.15 Aligned_cols=156 Identities=39% Similarity=0.708 Sum_probs=141.7
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|+++.|... |++.++..+.+.+++..+.+++||++|++++..++..+++++|++++||
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 68899997 99999999999988765 8888888888889999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|+++++||.++..|+..+.. ...++.|+++|+||+|+... +.+..+++..+++.++++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~---------------------~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 140 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDR---------------------YASENVNKLLVGNKCDLTDK-RVVDYSEAQEFADELGIP 140 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHH---------------------hCCCCCcEEEEEEChhcccc-cCCCHHHHHHHHHHcCCe
Confidence 99999999999999998876 23357899999999998765 568888999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++||++|.||+++|+.|++.+.
T Consensus 141 ~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 141 FLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999998774
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=5.3e-28 Score=219.38 Aligned_cols=158 Identities=28% Similarity=0.431 Sum_probs=140.2
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|+.++|... |+|.++....+..++..+.+.+|||+|+++|..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 55689999998 99999999999998765 9998988888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.||+.+..|+..+.. . .+++|++|||||+|+.. +.+..+++ ++++..
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~---------------------~-~~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~ 145 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCR---------------------V-CENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKK 145 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH---------------------h-CCCCcEEEEEEchhhhh--ccCCHHHH-HHHHhc
Confidence 99999999999999999998876 1 35789999999999964 44555555 788888
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++|+++||++|.||+++|++|++.+.+.
T Consensus 146 ~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 146 NLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 89999999999999999999999988654
No 47
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=6.9e-28 Score=213.67 Aligned_cols=155 Identities=25% Similarity=0.474 Sum_probs=133.9
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|+ |||||+++|.++.|... |++..+ .+.+.+++..+.++||||+|+++|..+++.+++++|++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 7889997 99999999999998765 777665 4567788888999999999999999999999999999999999
Q ss_pred CCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCHHH
Q psy18160 123 ITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEYSE 190 (373)
Q Consensus 123 ~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~~e 190 (373)
+++++||+.+. .|+..+.. ..+++|++|||||+|+.+.. +.+..++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~----------------------~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (189)
T cd04134 81 VDSPDSLENVESKWLGEIRE----------------------HCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEE 138 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHH
Confidence 99999999997 58888765 12578999999999996541 1356778
Q ss_pred HHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 191 GEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 191 ~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+.++++..+ ++|+|+||++|.||+++|++|++.+..
T Consensus 139 ~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 139 GLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 888888877 789999999999999999999988863
No 48
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=7.1e-28 Score=207.31 Aligned_cols=155 Identities=29% Similarity=0.487 Sum_probs=136.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|+.+.|... |++ +.+.+.+.+++..+.+++|||+|+++|..+++.+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 58899997 99999999999988765 665 445677888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..+++.++++.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 139 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRV--------------------KDTENVPMVLVGNKCDLEDE-RVVSREEGQALARQWGCP 139 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-ceecHHHHHHHHHHcCCe
Confidence 999999999999999888762 22357899999999999764 567778888899888899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i 224 (373)
++++||++|.|++++|++|++.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 140 FYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998765
No 49
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=1.1e-27 Score=217.06 Aligned_cols=157 Identities=22% Similarity=0.386 Sum_probs=136.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|+ |||||+++|+.+.|... |++.++. +.+.+++..+.|.||||+|+++|..+++.+|+++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 68999998 99999999999998866 8887764 67889999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160 122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS 189 (373)
Q Consensus 122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~ 189 (373)
|+++++||+.+. .|..++.. ..+++|++|||||+|+..+ ...++.+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~----------------------~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e 138 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQE----------------------FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHE 138 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHH
Confidence 999999999995 67766544 3467999999999999642 1237888
Q ss_pred HHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHcchh
Q psy18160 190 EGEAYAEENGL-LFMETSAKTAMN-VNEIFVEIAKKLPKK 227 (373)
Q Consensus 190 e~~~~~~~~~~-~~~evSak~~~g-I~~lf~~L~~~i~~~ 227 (373)
++..+++..++ +|+|+||+++.+ |+++|..++.....+
T Consensus 139 ~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 139 QGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 99999999995 899999999985 999999988876543
No 50
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=9.3e-28 Score=207.12 Aligned_cols=161 Identities=27% Similarity=0.500 Sum_probs=141.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|++++|... |++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 47899997 99999999999998766 8888988888999999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+|+.+..|+.++.+..... ....++|+++|+||+|+.+. +.+..+++.++++..+++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~----------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 143 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPH----------------GNMENIVVVVCANKIDLTKH-RAVSEDEGRLWAESKGFK 143 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhcccc----------------ccCCCceEEEEEEchhcccc-cccCHHHHHHHHHHcCCe
Confidence 9999999999999999987731110 01257899999999999754 567888888899999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++||++|.|++++|++|++.+.
T Consensus 144 ~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 51
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=1.2e-27 Score=208.61 Aligned_cols=157 Identities=27% Similarity=0.463 Sum_probs=137.6
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|+ |||||++||+++.|... |++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 6889997 99999999999999765 99999988889999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-ccCHHHHHHHHHHcCCe
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CVEYSEGEAYAEENGLL 201 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v~~~e~~~~~~~~~~~ 201 (373)
++++++|+.+.+|+..+.+. .....+|+++||||+|+.+... .+..+++.++++.++.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKE--------------------NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE 141 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHh--------------------cCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe
Confidence 99999999999999987651 2234578999999999865412 23466778888888999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
|+++||++|.||+++|+.|++.+.
T Consensus 142 ~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 142 YWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988775
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=1.3e-27 Score=206.32 Aligned_cols=156 Identities=29% Similarity=0.495 Sum_probs=137.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|+.+.|... |++..+ .+.+.+++..+.+++|||+|+++|..+++.+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 57899997 99999999999888665 776555 467888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+|+.+.+|+..+... ....++|++|||||+|+... +.+..+++.++++.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 139 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRV--------------------KDTEDVPMILVGNKCDLEDE-RVVGKEQGQNLARQWGCA 139 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECCcchhc-cEEcHHHHHHHHHHhCCE
Confidence 999999999999999888762 23467899999999999765 567777888899889999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++||++|.|++++|.+|++.+.
T Consensus 140 ~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 140 FLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987664
No 53
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=2e-27 Score=208.03 Aligned_cols=153 Identities=26% Similarity=0.457 Sum_probs=133.3
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+.||..+.|... |++. .+.+.+.+++..+.++||||+|+++|..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 68999998 99999999999988765 6654 44567788999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160 122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS 189 (373)
Q Consensus 122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~ 189 (373)
|+++++||+++. .|+..+.. ..+++|++|||||+|+.+. .+.++.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~----------------------~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~ 138 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRH----------------------HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP 138 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHH
Confidence 999999999996 68887765 1357899999999999643 1358889
Q ss_pred HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
++.++++.++ ++|+|+||++|.||+++|+.+++.
T Consensus 139 ~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 139 QGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 9999999998 499999999999999999999864
No 54
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.6e-27 Score=212.27 Aligned_cols=153 Identities=20% Similarity=0.345 Sum_probs=125.4
Q ss_pred cEEEEEEcC---ChhHHHH-HhhhCcC-----cCc---ceee-eEEEEE--------EEECCEEEEEEEEeCCCcccccc
Q psy18160 47 CMAQIWLKD---RVDCMTQ-IVINVVF-----YPY---LFSA-AFITQT--------VCLDDVTIRFEIWDTAGQERYHT 105 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~-rl~~~~~-----~~~---Tig~-~~~~~~--------i~~~~~~v~l~i~Dt~G~e~~~~ 105 (373)
.++++++|+ |||||+. ++.++.| ... |++. +.+... +.+++..+.++||||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 368999998 9999995 6665543 222 7752 332222 25789999999999999986 3
Q ss_pred cchhhccCCcEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC--
Q psy18160 106 LAPMYYRNAQAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-- 182 (373)
Q Consensus 106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-- 182 (373)
+...+++++|++++|||++++.||+++. .|+..+.. . .+++|++|||||+||.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~---------------------~-~~~~piilvgNK~DL~~~~~ 137 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRH---------------------F-CPRVPVILVGCKLDLRYADL 137 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEEchhcccccc
Confidence 5677899999999999999999999997 59888766 1 247899999999999641
Q ss_pred ----------------CcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 183 ----------------RRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 183 ----------------~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.+.++.++++++|+.++++|+||||++|.||+++|+.+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 138 DEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred chhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999864
No 55
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=1.8e-27 Score=210.18 Aligned_cols=160 Identities=28% Similarity=0.440 Sum_probs=136.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
++++++|+ |||||+++|.++.|... |++.++. ..+..+ +..+.+.+|||+|+++|..+++.+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 47899998 99999999999998766 7776664 345565 7889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC---CcccCHHHHHHHHH
Q psy18160 121 YDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS---RRCVEYSEGEAYAE 196 (373)
Q Consensus 121 ~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~---~~~v~~~e~~~~~~ 196 (373)
||+++++||+++. .|+..+.. ..+++|++|||||+|+... .+.+..+++.++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~ 137 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNH----------------------FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK 137 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH
Confidence 9999999999996 58877654 2357899999999998653 13577888999999
Q ss_pred HcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 197 ENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 197 ~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
.++. +++++||++|.||+++|+.+++.+......
T Consensus 138 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 138 KQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred HcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 9998 999999999999999999999988765443
No 56
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=1.3e-27 Score=213.54 Aligned_cols=147 Identities=29% Similarity=0.466 Sum_probs=131.7
Q ss_pred ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHH
Q psy18160 56 RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA 132 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i 132 (373)
|||||++||+.+.|... |+|.++..+.+.+++..+.+.||||+|+++|..++..|++++|++|+|||++++.||+.+
T Consensus 7 GKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i 86 (200)
T smart00176 7 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNV 86 (200)
T ss_pred CHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHH
Confidence 99999999999988764 999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCC
Q psy18160 133 KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMN 212 (373)
Q Consensus 133 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~g 212 (373)
..|+.++.+ . .+++|++|||||+|+.. +.+..++ .++++..++.|+|+||++|.|
T Consensus 87 ~~w~~~i~~---------------------~-~~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~ 141 (200)
T smart00176 87 PNWHRDLVR---------------------V-CENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYN 141 (200)
T ss_pred HHHHHHHHH---------------------h-CCCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCC
Confidence 999999877 1 25799999999999864 4455544 478888899999999999999
Q ss_pred HHHHHHHHHHHcchh
Q psy18160 213 VNEIFVEIAKKLPKK 227 (373)
Q Consensus 213 I~~lf~~L~~~i~~~ 227 (373)
|+++|++|++.+.+.
T Consensus 142 v~~~F~~l~~~i~~~ 156 (200)
T smart00176 142 FEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888643
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=1.7e-27 Score=204.88 Aligned_cols=153 Identities=30% Similarity=0.514 Sum_probs=137.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC--CEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD--DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~--~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
++++++|. |||||+++|+++.|... |++.++..+.+.++ +..+.+++|||+|+++|..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 47899998 99999999999988765 88888877888887 788999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++++|+.+..|+..+.. ...++|+++|+||+|+... +.+..+++.++++.++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~----------------------~~~~~p~iiv~nK~Dl~~~-~~v~~~~~~~~~~~~~ 137 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEA----------------------ECGDIPMVLVQTKIDLLDQ-AVITNEEAEALAKRLQ 137 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEEChhcccc-cCCCHHHHHHHHHHcC
Confidence 9999999999999999988765 2357899999999999765 5678888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
++++++||+++.|++++|++|+..
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 138 LPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999998753
No 58
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=2.6e-27 Score=204.16 Aligned_cols=155 Identities=34% Similarity=0.499 Sum_probs=136.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|+.+.|.+. |++ ++..+.+.+++..+.++||||+|+++|..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 58899997 99999999999988766 554 566678888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.||+++..|+..+.+. ....++|++|||||+|+... +.+..+++..+++..+.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piviv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 139 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRV--------------------KGYEKVPIILVGNKVDLESE-REVSSAEGRALAEEWGCP 139 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECccchhc-CccCHHHHHHHHHHhCCE
Confidence 999999999999999888762 12357899999999998654 567777888888888899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i 224 (373)
++++||+++.|++++|.++++.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 140 FMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998765
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=3.7e-27 Score=204.75 Aligned_cols=160 Identities=29% Similarity=0.524 Sum_probs=140.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|+++.|.+. |+|.++..+.+.+++..+.++|||++|++++..++..+++++|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4589999998 99999999999998875 88888888889999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||+++++||+.+..|+..+...... ....++|++|||||+|+.. +.+..++++++++.++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~-----------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~ 144 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADV-----------------KEPESFPFVVLGNKNDIPE--RQVSTEEAQAWCRENG 144 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccc-----------------ccCCCCcEEEEEECccccc--cccCHHHHHHHHHHCC
Confidence 99999999999999999887662110 1235789999999999863 6688889999999888
Q ss_pred C-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 200 L-LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 200 ~-~~~evSak~~~gI~~lf~~L~~~i 224 (373)
. +++++||++|.|++++|+.+++.+
T Consensus 145 ~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 145 DYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 4 899999999999999999998753
No 60
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=3.3e-27 Score=203.97 Aligned_cols=156 Identities=40% Similarity=0.634 Sum_probs=140.6
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|.++.+... |++.++..+.+.+++..+.+++||++|++++..++..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 368999997 99999999999988765 888888888999999889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+|+.+.+|+..+.. ....++|++||+||+|+... +.+..++...+++..++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~pi~vv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 140 (165)
T cd01868 83 YDITKKQTFENVERWLKELRD---------------------HADSNIVIMLVGNKSDLRHL-RAVPTEEAKAFAEKNGL 140 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-ccCCHHHHHHHHHHcCC
Confidence 999999999999999998877 23346899999999999765 66788888999988899
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+++++||++|.|++++|++|+..+
T Consensus 141 ~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 141 SFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999999999999999998764
No 61
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=3.8e-27 Score=202.72 Aligned_cols=155 Identities=37% Similarity=0.671 Sum_probs=140.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||++++.++++... |++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 47899997 99999999999998765 7888888888889998999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++++|..+..|+..+.. ...+++|++||+||.|+... +.+..+++..+++..+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 138 (161)
T cd04113 81 DITNRTSFEALPTWLSDARA---------------------LASPNIVVILVGNKSDLADQ-REVTFLEASRFAQENGLL 138 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEEchhcchh-ccCCHHHHHHHHHHcCCE
Confidence 99999999999999988766 34468999999999999764 668888999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i 224 (373)
++++||+++.|++++|+++++.+
T Consensus 139 ~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 139 FLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 99999999999999999998754
No 62
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=5.1e-27 Score=203.91 Aligned_cols=157 Identities=41% Similarity=0.713 Sum_probs=142.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..+++++|. |||||++++++.++... |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 368899997 99999999999988775 888888888889999899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.||+.+..|+..+.. ...+++|++||+||.|+... +.+..+++..+++..++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 141 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQ---------------------HSNSNMTIMLIGNKCDLESR-REVSYEEGEAFAKEHGL 141 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cCCCHHHHHHHHHHcCC
Confidence 999999999999999998877 33468999999999999754 56788889999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++++||+++.||+++|.++++.+.
T Consensus 142 ~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 142 IFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 63
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=3.8e-27 Score=203.04 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=128.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
++++++|+ |||||+++|+.+.|... +.+..+ .+.+.+++..+.+++|||+|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 37899997 99999999999988765 445455 57789999999999999999975 356789999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC-CCcccCHHHHHHHHHHc-CC
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT-SRRCVEYSEGEAYAEEN-GL 200 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~~v~~~e~~~~~~~~-~~ 200 (373)
++++.||+++..|+.++... ...+++|++|||||.|+.. ..+.++.++++++++.. ++
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~--------------------~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~ 134 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSY--------------------RNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRC 134 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCC
Confidence 99999999999999998762 1236789999999999853 23678888999999876 48
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+|+||||++|.||+++|..+++.+
T Consensus 135 ~~~e~SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 135 SYYETCATYGLNVERVFQEAAQKI 158 (158)
T ss_pred cEEEEecCCCCCHHHHHHHHHhhC
Confidence 999999999999999999998653
No 64
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=5.9e-27 Score=203.36 Aligned_cols=154 Identities=29% Similarity=0.464 Sum_probs=134.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|+ |||||+++|+.+.+... |++.++....+..++..+.+.+|||+|++++..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 37889998 99999999998887765 8888888777888888999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|+++++||+.+..|+..+.+. ..++|+++||||+|+.. +.+.. +..++++..+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~----------------------~~~~piiiv~nK~Dl~~--~~~~~-~~~~~~~~~~~~ 135 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRV----------------------CGNIPIVLCGNKVDIKD--RKVKA-KQITFHRKKNLQ 135 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHh----------------------CCCCcEEEEEEchhccc--ccCCH-HHHHHHHHcCCE
Confidence 999999999999999998772 23799999999999974 33443 455677778899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++|+||++|.||+++|++|++.+.+
T Consensus 136 ~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 136 YYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHh
Confidence 9999999999999999999988864
No 65
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=6.2e-27 Score=202.48 Aligned_cols=156 Identities=37% Similarity=0.633 Sum_probs=139.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..+++++|. |||||++++..+.|... |.+.++..+.+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 368888987 99999999999988775 888888888899999889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+|+.+..|+..+.. ....++|+++|+||+|+... +.+..+++.++++.++.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 140 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEK---------------------YGASNVVLLLIGNKCDLEEQ-REVLFEEACTLAEKNGM 140 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cccCHHHHHHHHHHcCC
Confidence 999999999999999998876 33467899999999999765 56778888999998885
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 201 -LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 201 -~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.++++||++|.|++++|++|++.+
T Consensus 141 ~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 141 LAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999998753
No 66
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=6.5e-27 Score=210.94 Aligned_cols=159 Identities=40% Similarity=0.697 Sum_probs=144.5
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|++.+|.+. |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 478999998 99999999999988765 888899888899999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+|+.+.+|+..+.. ...+.+|+++|+||+|+... +.++.++++++++.+++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~---------------------~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 143 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQ---------------------HANANMTIMLIGNKCDLAHR-RAVSTEEGEQFAKEHGL 143 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECccCccc-cCCCHHHHHHHHHHcCC
Confidence 999999999999999888765 23457899999999999765 67888999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++||+++.||+++|+++++.+.++
T Consensus 144 ~~~e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 144 IFMEASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988754
No 67
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=207.37 Aligned_cols=162 Identities=35% Similarity=0.529 Sum_probs=140.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..++++++|. |||||+++|++..+... |.+.++....+.+++..+.+.||||+|+++|..++..+++++|++++|
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 3478999997 99999999999888655 888888888888898889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHH-HHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 121 YDITNQDTFGRAKS-WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
||++++++|+++.. |...+... ....+.|++||+||+|+... +.+..++...+++.++
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~--------------------~~~~~~~~ilv~NK~Dl~~~-~~i~~~~~~~~~~~~~ 151 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELY--------------------STNQDCVKMLVGNKVDRESE-RDVSREEGMALAKEHG 151 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-CccCHHHHHHHHHHcC
Confidence 99999999999975 65555431 12346799999999999765 5677888888999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
++|+++||+++.|++++|++|++.+....
T Consensus 152 ~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 152 CLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998886543
No 68
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=9.2e-27 Score=200.93 Aligned_cols=153 Identities=28% Similarity=0.444 Sum_probs=134.0
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|..++|.+. |.+.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 47899997 99999999999998876 7777777778888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+|+++..|+..+.. ..+++|+++|+||+|+... ..++..++++..+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~----------------------~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~ 134 (161)
T cd04124 81 DVTRKITYKNLSKWYEELRE----------------------YRPEIPCIVVANKIDLDPS----VTQKKFNFAEKHNLP 134 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH----------------------hCCCCcEEEEEECccCchh----HHHHHHHHHHHcCCe
Confidence 99999999999999998866 2347899999999998532 234566777788899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++||++|.|++++|+.+++.+.+
T Consensus 135 ~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 135 LYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987764
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=1e-26 Score=199.36 Aligned_cols=154 Identities=26% Similarity=0.467 Sum_probs=135.0
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|+++.|... |++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 58899998 99999999999988765 666544 567788988899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+|+++..|+..+.+. ....++|++||+||+|+.. +.+..+++.++++..+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~ 138 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRV--------------------KDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIP 138 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCe
Confidence 999999999999998888762 1235789999999999975 456778888899889999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i 224 (373)
++++||++|.|++++|++|++.+
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=9.7e-27 Score=202.52 Aligned_cols=157 Identities=33% Similarity=0.541 Sum_probs=140.3
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccc-ccchhhccCCcEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAII 119 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~-~l~~~~~~~ad~iil 119 (373)
.++++++|. |||||+++|+.+.+... |++.++..+.+.+++..+.+++|||+|+++|. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 368999998 99999999999988765 88888888889999999999999999999887 578899999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++++|+.+..|+..+... ....++|+++|+||+|+... +.++.+++.++++..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 140 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQH--------------------SLPNEVPRILVGNKCDLREQ-IQVPTDLAQRFADAHS 140 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHh--------------------cCCCCCCEEEEEECccchhh-cCCCHHHHHHHHHHcC
Confidence 99999999999999999888762 22367999999999999765 6688888999999999
Q ss_pred CeEEEEcCCC---CCCHHHHHHHHHHHc
Q psy18160 200 LLFMETSAKT---AMNVNEIFVEIAKKL 224 (373)
Q Consensus 200 ~~~~evSak~---~~gI~~lf~~L~~~i 224 (373)
++|+|+||++ +.||+++|..|++.+
T Consensus 141 ~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 141 MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 9999999999 899999999998765
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=1.8e-26 Score=199.82 Aligned_cols=155 Identities=25% Similarity=0.334 Sum_probs=133.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|+++.|... |++..+ .+.+..++..+.+++|||+|+++|..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 57899997 99999999999998765 555444 556677888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|+++++||+.+..|+..+.... ....+++|++|||||+|+... +.+..+++..++...+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~~~ 141 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIK------------------GNNIEKIPIMLVGNKCDESHK-REVSSNEGAACATEWNCA 141 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh------------------cCCCCCCCEEEEEECcccccc-CeecHHHHHHHHHHhCCc
Confidence 9999999999999988776521 112367999999999999764 567788888899888999
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q psy18160 202 FMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~ 222 (373)
|+++||++|.||+++|++|+.
T Consensus 142 ~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 142 FMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred EEEeecCCCCCHHHHHHHHHh
Confidence 999999999999999999874
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=1.5e-26 Score=199.55 Aligned_cols=155 Identities=28% Similarity=0.457 Sum_probs=135.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|. |||||+++|++..+... |++ +...+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 7899997 99999999999988765 555 3445677888889999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~ 202 (373)
++++++|+.+..|+..+.+. ....+.|+++||||+|+... +.+..+++.++++..+.++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~pii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 139 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRV--------------------KDRDDVPIVLVGNKCDLESE-RVVSTEEGKELARQWGCPF 139 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-ceEcHHHHHHHHHHcCCEE
Confidence 99999999999998887662 22347899999999999765 5677788889999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 203 METSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 203 ~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++||++|.|++++|++|++.+.
T Consensus 140 ~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 140 LETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EEeecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 73
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=1.5e-26 Score=201.64 Aligned_cols=153 Identities=29% Similarity=0.486 Sum_probs=132.6
Q ss_pred EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI 123 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~ 123 (373)
++++|+ |||||+++|.++.|... |++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 478887 99999999999998765 665444 46778899999999999999999999999999999999999999
Q ss_pred CCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHHHH
Q psy18160 124 TNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYSEG 191 (373)
Q Consensus 124 ~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~e~ 191 (373)
++++||+++. .|+..+.. ..+++|++|||||+|+... .+.++.+++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 137 (174)
T smart00174 80 DSPASFENVKEKWYPEVKH----------------------FCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQG 137 (174)
T ss_pred CCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHH
Confidence 9999999986 58888765 2357899999999999653 133778889
Q ss_pred HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 192 EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 192 ~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++++.++. +|+++||+++.||+++|+.+++.+.
T Consensus 138 ~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 138 EALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred HHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 999999986 9999999999999999999998765
No 74
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=3.5e-26 Score=196.93 Aligned_cols=156 Identities=24% Similarity=0.418 Sum_probs=135.8
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|+++.+... |.+..+ .+...+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 368999998 99999999999887655 555443 56677889889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+|+.+..|+..+.+. ....++|++||+||+|+... +.+..+++.++++.+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~ 139 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRV--------------------KDRDEFPMILVGNKADLEHQ-RKVSREEGQELARKLKI 139 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHH--------------------hCCCCCCEEEEeeCcccccc-ceecHHHHHHHHHHcCC
Confidence 9999999999999999888762 22357899999999999765 55777788899998899
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+++++||++|.||+++|++|++.+
T Consensus 140 ~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 140 PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 999999999999999999998764
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=3.1e-26 Score=204.59 Aligned_cols=164 Identities=19% Similarity=0.176 Sum_probs=134.1
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc--------chhhccC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL--------APMYYRN 113 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l--------~~~~~~~ 113 (373)
++++++|. |||||+++|++++|... |++.+++...+.+++..+.+++|||+|.+++... ...++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 47899998 99999999999998765 7776776677888999999999999997655322 2345789
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
+|++|+|||+++++||+.+..|+..+.+.. .....++|++|||||+|+... +.+..+++.+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~------------------~~~~~~~piiivgNK~Dl~~~-~~~~~~~~~~ 141 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETR------------------PAGNKEPPIVVVGNKRDQQRH-RFAPRHVLSV 141 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------------ccCCCCCCEEEEEECcccccc-ccccHHHHHH
Confidence 999999999999999999999998887621 012467999999999999765 6677777777
Q ss_pred HHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 194 YAE-ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 194 ~~~-~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
+++ .++++|+++||++|.||+++|+.+++.+..+...
T Consensus 142 ~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 142 LVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred HHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 764 5689999999999999999999999888755443
No 76
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=4.6e-26 Score=196.04 Aligned_cols=156 Identities=43% Similarity=0.702 Sum_probs=140.5
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|.+..+... |++.++....+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 47899997 99999999999988665 8888888888899998899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+++.+..|+..+.. ...+++|+++|+||+|+... +.+..+++.++++.++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~---------------------~~~~~~pivvv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 138 (164)
T smart00175 81 DITNRESFENLKNWLKELRE---------------------YADPNVVIMLVGNKSDLEDQ-RQVSREEAEAFAEEHGLP 138 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEEchhcccc-cCCCHHHHHHHHHHcCCe
Confidence 99999999999999998877 23368999999999998764 567788888999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++||+++.|++++|+.|++.+.
T Consensus 139 ~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 139 FFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998775
No 77
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.95 E-value=4.5e-26 Score=198.87 Aligned_cols=153 Identities=24% Similarity=0.409 Sum_probs=132.0
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
++++++|. |||||+++|.++.|... +.+.+++...+.+++..+.+++|||+|+++|..+++.+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 47889997 99999999999888776 33345666778889989999999999999999999999999999999999
Q ss_pred CCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHHH
Q psy18160 123 ITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYSE 190 (373)
Q Consensus 123 ~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~e 190 (373)
+++++||+.+. .|+..+.. ..+++|+++||||+|+... .+.+..++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRK----------------------HNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR 138 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH
Confidence 99999999985 68877765 1246899999999998642 35688889
Q ss_pred HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy18160 191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~ 222 (373)
+.++++..+. +|+++||++|.||+++|+.++-
T Consensus 139 ~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 139 AKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 9999999987 8999999999999999998763
No 78
>KOG0395|consensus
Probab=99.94 E-value=2.3e-26 Score=204.27 Aligned_cols=161 Identities=30% Similarity=0.432 Sum_probs=147.6
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..+++++|. |||+|+.+|..+.|... |++ +.+.+.+.+++..+.+.|+||+|+++|..+...+++++|++++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 468999997 99999999999999988 777 66789999999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
|+++++.||+.+..++..+.+. .....+|+++||||+|+... |.|+.+++++++..+++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~--------------------~~~~~~PivlVGNK~Dl~~~-R~V~~eeg~~la~~~~~ 140 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRV--------------------KGRDDVPIILVGNKCDLERE-RQVSEEEGKALARSWGC 140 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------hCcCCCCEEEEEEcccchhc-cccCHHHHHHHHHhcCC
Confidence 9999999999999999998552 34466999999999999887 89999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+|+|+||+.+.+|+++|..|++.+.....
T Consensus 141 ~f~E~Sak~~~~v~~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 141 AFIETSAKLNYNVDEVFYELVREIRLPRE 169 (196)
T ss_pred cEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999998876333
No 79
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=8.4e-26 Score=194.49 Aligned_cols=155 Identities=61% Similarity=0.912 Sum_probs=140.9
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++++++++... |.+.++..+.+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 68999997 99999999999998873 8888888899999999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++++|+.+..|+..+.. ...+.+|+++++||+|+... +.++.++..++++.++++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 139 (163)
T cd01860 82 DITSEESFEKAKSWVKELQR---------------------NASPNIIIALVGNKADLESK-RQVSTEEAQEYADENGLL 139 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-CcCCHHHHHHHHHHcCCE
Confidence 99999999999999998877 33468999999999998754 567888888999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i 224 (373)
++++||++|.|++++|++|++.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 140 FFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998875
No 80
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=6.5e-26 Score=195.53 Aligned_cols=154 Identities=28% Similarity=0.465 Sum_probs=134.1
Q ss_pred EEEEEEcC---ChhHHHHHhhhC--cCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINV--VFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~--~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
++++++|. |||||++++..+ .|... |+|.++..+.+.++ +..+.+.+|||+|++++..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 47899998 999999999865 56555 88888887888775 57899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++++|+.+..|+..+.. . ..++|+++|+||+|+.+. +.+...+++.++...
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~---------------------~-~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 137 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRT---------------------A-SKHMPGVLVGNKMDLADK-AEVTDAQAQAFAQAN 137 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEECcccccc-cCCCHHHHHHHHHHc
Confidence 99999999999999999988876 1 256899999999999665 556777777888888
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+++++++||+++.|++++|+.|++.+
T Consensus 138 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 138 QLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 89999999999999999999998764
No 81
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=1.1e-25 Score=193.33 Aligned_cols=153 Identities=37% Similarity=0.658 Sum_probs=137.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|. |||||++++.+.++... +.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|||
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 6888887 99999999999988765 78888888889899888999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~ 202 (373)
++++++|+.+..|+..+.. ....+.|+++|+||+|+... +.+..++...+++..++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~ 139 (161)
T cd01861 82 ITNRQSFDNTDKWIDDVRD---------------------ERGNDVIIVLVGNKTDLSDK-RQVSTEEGEKKAKELNAMF 139 (161)
T ss_pred CcCHHHHHHHHHHHHHHHH---------------------hCCCCCEEEEEEEChhcccc-CccCHHHHHHHHHHhCCEE
Confidence 9999999999999998765 22347999999999999654 5677888888998889999
Q ss_pred EEEcCCCCCCHHHHHHHHHHH
Q psy18160 203 METSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 203 ~evSak~~~gI~~lf~~L~~~ 223 (373)
+++||+++.|++++|++|.+.
T Consensus 140 ~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 140 IETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHHh
Confidence 999999999999999999864
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=6.3e-26 Score=209.10 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=136.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|+ |||||+++|++++|... |++ ++..+.+.+++..+.++||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 37889997 99999999999988765 665 666788899999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-cCC
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGL 200 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-~~~ 200 (373)
|+++++||+++..|+.++..... ..........++|++||+||+|+... +.+..+++.+++.. .++
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~------------~~~~~~~~~~~~piIivgNK~Dl~~~-~~v~~~ei~~~~~~~~~~ 146 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKS------------CLKNKTKENVKIPMVICGNKADRDFP-REVQRDEVEQLVGGDENC 146 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhc------------ccccccccCCCCcEEEEEECccchhc-cccCHHHHHHHHHhcCCC
Confidence 99999999999999998876210 00000012357899999999999764 56788888887764 467
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++++||++|.||+++|++|+....
T Consensus 147 ~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 147 AYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999998664
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=9.7e-26 Score=196.32 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=134.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCc-Cc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFY-PY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~-~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
+.++++++|+ |||||++||+++.|. .. |++.++..+.+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4578899997 999999999999997 43 8888888788889998899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ..++|+++|+||+|+.+. +.+..++..++++.+
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~-----------------------~~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~ 138 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM-----------------------LGEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKL 138 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc-----------------------CCCCeEEEEEEccccccc-ccccccCHHHHHHHc
Confidence 99999999999999888876532 247899999999999654 334445567788888
Q ss_pred CC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 199 GL-LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 199 ~~-~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++ .++++||+++.|++++|+.|++.+.
T Consensus 139 ~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 139 GLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 87 4799999999999999999998765
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=4e-25 Score=189.99 Aligned_cols=154 Identities=37% Similarity=0.617 Sum_probs=137.3
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|++..+... |++.++....+.+++..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 47889997 99999999999988664 8888888788888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+|+.+..|+..+... ....++|+++|+||+|+.. +.+..++..++++..+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~ 138 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETY--------------------STNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNML 138 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHh--------------------CCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCE
Confidence 999999999999999988762 2346899999999999974 456778888999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHH
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~ 223 (373)
++++||++|.|++++|+++++.
T Consensus 139 ~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 139 FIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999999998865
No 85
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=4e-25 Score=192.59 Aligned_cols=154 Identities=26% Similarity=0.424 Sum_probs=132.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|.++.|... |++ +.....+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 37899997 99999999999998765 554 344557788998999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCHH
Q psy18160 122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEYS 189 (373)
Q Consensus 122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~~ 189 (373)
|++++.+|+.+. .|+..+.. . .++.|+++||||+|+.+.. +.++.+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~---------------------~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 137 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKE---------------------Y-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVE 137 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHh---------------------h-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHH
Confidence 999999999986 67777655 2 4678999999999986431 357788
Q ss_pred HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i 224 (373)
++..+++..+. +|+++||++|.||+++|+.++..+
T Consensus 138 ~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 138 QGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 89999999986 799999999999999999998765
No 86
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=4.2e-25 Score=191.73 Aligned_cols=156 Identities=26% Similarity=0.467 Sum_probs=136.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|.++.|... |++..+ .+.+.+++..+.+++|||+|+++|..+++.++++++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 57899997 99999999999988765 666444 577888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC-C
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-L 200 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~-~ 200 (373)
|++++++|+.+..|...+.+. ....+.|+++++||.|+... +.+..+++.++++..+ +
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 139 (168)
T cd04177 81 SVTSEASLNELGELREQVLRI--------------------KDSDNVPMVLVGNKADLEDD-RQVSREDGVSLSQQWGNV 139 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------hCCCCCCEEEEEEChhcccc-CccCHHHHHHHHHHcCCc
Confidence 999999999999998888762 22357899999999999765 6677788888888888 8
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++++||+++.||+++|+++++++.
T Consensus 140 ~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 140 PFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.94 E-value=2.1e-25 Score=192.93 Aligned_cols=156 Identities=27% Similarity=0.367 Sum_probs=130.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccc-ccccchhhccCCcEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQER-YHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-~~~l~~~~~~~ad~iilv~ 121 (373)
+++++|. |||||+++++.+.|... |.+..+ .+.+.+++..+.+++|||+|+++ +......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 4788887 99999999999887654 444344 56678899999999999999986 3456778899999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.||+.+..|+..+.... ....++|+++||||+|+... +.++.+++.++++..+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~~~ 139 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIK-------------------KRDREIPVILVGNKADLLHY-RQVSTEEGEKLASELGCL 139 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-------------------cCCCCCCEEEEEECCchHHh-CccCHHHHHHHHHHcCCE
Confidence 9999999999999988887621 01357899999999998655 668888899999999999
Q ss_pred EEEEcCCCC-CCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTA-MNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~-~gI~~lf~~L~~~i~ 225 (373)
|+++||+++ .||+++|+.|++.+.
T Consensus 140 ~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 140 FFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred EEEeCCCCCchhHHHHHHHHHHHHh
Confidence 999999999 499999999998654
No 88
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=6.6e-25 Score=188.12 Aligned_cols=155 Identities=41% Similarity=0.698 Sum_probs=136.5
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|++..+.+. |.+.++..+.+.+.+..+.+.+||++|++++..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 37889997 99999999999988765 6666776777888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++++++.+..|+.++.. ....++|+++|+||+|+... +.+..++..++++..+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 138 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQ---------------------MRGNNISLVIVGNKIDLERQ-RVVSKSEAEEYAKSVGAK 138 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cCCCHHHHHHHHHHcCCE
Confidence 99999999999999988876 23347899999999999754 567778888889889999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i 224 (373)
++++||+++.|++++|++|++.+
T Consensus 139 ~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 139 HFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=4.1e-25 Score=200.70 Aligned_cols=157 Identities=25% Similarity=0.266 Sum_probs=134.3
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCc-Cc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc-CCcEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFY-PY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR-NAQAAII 119 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~-~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~-~ad~iil 119 (373)
++++++|+ |||||+++|+.+.|. .. |.+.++..+.+.+++..+.+.+|||+|++ ..+...+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 37889997 999999999988885 33 55557888889999999999999999998 334456677 9999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.||+.+..|+..+... ....++|++||+||+|+... +.++.+++.+++...+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~--------------------~~~~~~piilV~NK~Dl~~~-~~v~~~~~~~~a~~~~ 137 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRN--------------------RQLEDRPIILVGNKSDLARS-REVSVQEGRACAVVFD 137 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEEChhcccc-ceecHHHHHHHHHHcC
Confidence 99999999999999999888762 12357999999999999765 6788888889999889
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
++|+++||+++.||+++|++|++.+...
T Consensus 138 ~~~~e~SA~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 138 CKFIETSAGLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988643
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.93 E-value=8e-25 Score=189.93 Aligned_cols=162 Identities=35% Similarity=0.592 Sum_probs=139.7
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||++++.+..+... |++.++..+.+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 37889997 99999999999988766 8888888888999999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC-C
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-L 200 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~-~ 200 (373)
|++++.+|+++..|...+..... .....++|+++|+||+|+... +.+..++...+.+..+ .
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 142 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQAS-----------------PSDPENFPFVVLGNKIDLEEK-RQVSTKKAQQWCQSNGNI 142 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC-----------------ccCCCCceEEEEEECcccccc-cccCHHHHHHHHHHcCCc
Confidence 99999999999999887655211 012347999999999999753 5567778888888887 7
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++||++|.|++++|+++++.+.++
T Consensus 143 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 143 PYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999887654
No 91
>KOG4252|consensus
Probab=99.93 E-value=1.8e-27 Score=199.71 Aligned_cols=164 Identities=24% Similarity=0.391 Sum_probs=152.0
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
-+..++.+++|+ ||||+++||+.+-|... |||++|..+.++++++.+++.+|||+||++|..+...||++|.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 345588888887 99999999999999887 999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
++||+-+|+.||+.+.+|++++.. ....+|.++|-||+||.++ .+++.++++.+++.
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~----------------------e~~~IPtV~vqNKIDlved-s~~~~~evE~lak~ 153 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQK----------------------ETERIPTVFVQNKIDLVED-SQMDKGEVEGLAKK 153 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHH----------------------HhccCCeEEeeccchhhHh-hhcchHHHHHHHHH
Confidence 999999999999999999999987 4578999999999999887 78999999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
++..++.+|++...||..+|..|++.+.++...
T Consensus 154 l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 154 LHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998876543
No 92
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.93 E-value=2.4e-24 Score=190.64 Aligned_cols=156 Identities=26% Similarity=0.454 Sum_probs=132.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.+++++|. |||||+++|..+.|... |++..+ ...+.+++..+.+.+||++|++++......+++++|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 47899997 99999999998888665 555554 456778888899999999999999888888899999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC---------CcccCHHHH
Q psy18160 122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS---------RRCVEYSEG 191 (373)
Q Consensus 122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~---------~~~v~~~e~ 191 (373)
|++++++|+.+. .|+..+.. ..+++|++|||||+|+.+. .+.+..+++
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~----------------------~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~ 138 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRR----------------------YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQG 138 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHH
Confidence 999999999997 68888865 1246999999999998542 245667888
Q ss_pred HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 192 EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 192 ~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..+++..+. +||++||++|.||+++|+++++.+..
T Consensus 139 ~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 139 KRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred HHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 999999985 89999999999999999999987764
No 93
>KOG0393|consensus
Probab=99.93 E-value=2.2e-25 Score=194.41 Aligned_cols=158 Identities=27% Similarity=0.479 Sum_probs=140.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
..+++|++|+ |||+|+..|..+.|... |+- |-+...+.++ |+.+.+.+|||+|||+|..+++..|.++|.|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 4589999998 99999999999999988 665 4456788895 99999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------Cccc
Q psy18160 119 IVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCV 186 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v 186 (373)
+||++.++.||+++. +|+.++.. ..+++|+||||+|.||.++ ...+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~----------------------~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~V 139 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKH----------------------HCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPV 139 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHh----------------------hCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcc
Confidence 999999999999986 78888876 4589999999999999743 1358
Q ss_pred CHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 187 EYSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 187 ~~~e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+.++++++|++.| ..|+|+||++..|+.++|+..+.....
T Consensus 140 t~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 140 TYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred cHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 8899999999999 689999999999999999998887764
No 94
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=5.1e-24 Score=184.58 Aligned_cols=157 Identities=31% Similarity=0.610 Sum_probs=136.9
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
...+++++|. |||||+++++.+.+.+. |++.++..+.+.+++..+.+.+||++|++++...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4478888887 99999999998887665 88888888888999999999999999999999998999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+|+.+..|+..+.. ....++|+++|+||+|+.+. +.+..+....+.+...
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~---------------------~~~~~~~~i~v~NK~D~~~~-~~i~~~~~~~~~~~~~ 143 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQ---------------------YANNKVITILVGNKIDLAER-REVSQQRAEEFSDAQD 143 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cccCHHHHHHHHHHcC
Confidence 9999999999999999888766 23357899999999999765 5566666777887777
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.+++++||++|.|++++|++|++.+
T Consensus 144 ~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 144 MYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999998754
No 95
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=3.5e-25 Score=222.49 Aligned_cols=214 Identities=19% Similarity=0.122 Sum_probs=147.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCccc--------ccccchhhc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQER--------YHTLAPMYY 111 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~--------~~~l~~~~~ 111 (373)
..+++++|. |||||+|+|++..+... +.|. +.....+.+++. .+.+|||+|++. +...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 357889997 99999999999876443 4443 344445556654 478999999863 333456678
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
+.||++|+|||+++..++.. ..|...+.. .+.|+++|+||+|+... ..+.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~------------------------~~~piilV~NK~Dl~~~----~~~~- 165 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR------------------------SGKPVILAANKVDDERG----EADA- 165 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH------------------------cCCCEEEEEECccCCcc----chhh-
Confidence 99999999999998766543 234443333 46899999999998642 1122
Q ss_pred HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecc
Q psy18160 192 EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMA 270 (373)
Q Consensus 192 ~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~ 270 (373)
.++. ..++ ..+++||++|.|++++|++|+..+.+......
T Consensus 166 ~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~-------------------------------------- 206 (472)
T PRK03003 166 AALW-SLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGS-------------------------------------- 206 (472)
T ss_pred HHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhhccccccccc--------------------------------------
Confidence 2222 2333 35799999999999999999987753110000
Q ss_pred cCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeee
Q psy18160 271 NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNR 349 (373)
Q Consensus 271 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v 349 (373)
.....+|++++|.+++|||||+++++...+. ....|++. .|+....+.+
T Consensus 207 ----------------------~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT--------~d~~~~~~~~ 256 (472)
T PRK03003 207 ----------------------ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTT--------VDPVDSLIEL 256 (472)
T ss_pred ----------------------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc--------CCcceEEEEE
Confidence 0001378999999999999999999987652 23344445 4554456667
Q ss_pred CCeEEEEEehhhHH
Q psy18160 350 LNNNVPITFVWVIM 363 (373)
Q Consensus 350 ~~~~~~l~iw~~~~ 363 (373)
+|.++ .|||+|-
T Consensus 257 ~~~~~--~l~DTaG 268 (472)
T PRK03003 257 GGKTW--RFVDTAG 268 (472)
T ss_pred CCEEE--EEEECCC
Confidence 88765 6899983
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=3e-24 Score=187.21 Aligned_cols=154 Identities=27% Similarity=0.477 Sum_probs=130.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.+++++|. |||||+++|.++.|... |++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 47899998 99999999999988765 666555 356788889999999999999999999989999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccCHH
Q psy18160 122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVEYS 189 (373)
Q Consensus 122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~~~ 189 (373)
|++++++|+.+. .|+..+.. ..++.|+++|+||+|+.+. ...+..+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~ 138 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKH----------------------FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPE 138 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHH
Confidence 999999999986 58777655 2357899999999998642 1335567
Q ss_pred HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+++++++..+. +++++||++|.||+++|++|++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 139 EGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 88888888774 899999999999999999998654
No 97
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=1.9e-24 Score=189.44 Aligned_cols=133 Identities=42% Similarity=0.747 Sum_probs=121.7
Q ss_pred ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccc
Q psy18160 73 LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGR 152 (373)
Q Consensus 73 Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~ 152 (373)
|+|.++..+.+.+++..+.+.||||+|+++|..++..++++||++|+|||++++.||+.+..|+..+..
T Consensus 12 Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~----------- 80 (176)
T PTZ00099 12 TIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN----------- 80 (176)
T ss_pred ccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH-----------
Confidence 999999989999999999999999999999999999999999999999999999999999999998876
Q ss_pred cchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 153 AKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 153 ~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
....++|++|||||+|+... +.+..+++..+++.++..|+|+||++|.||+++|++|++.+.+.
T Consensus 81 ----------~~~~~~piilVgNK~DL~~~-~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 81 ----------ERGKDVIIALVGNKTDLGDL-RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred ----------hcCCCCeEEEEEECcccccc-cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 22357899999999999765 56888899999999999999999999999999999999988653
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.92 E-value=1.1e-24 Score=189.56 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=120.2
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++++|. |||||+++|..+.+... |+|.++. .+.. ..+.+++|||+|++++..+++.+++++|++++||
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 479999997 99999999998877654 7776653 3333 4578999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE---- 197 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~---- 197 (373)
|++++.+|+++.+|+..+... ....++|++||+||+|+.+. +..+++.++.+.
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~ 141 (168)
T cd04149 85 DSADRDRIDEARQELHRIIND--------------------REMRDALLLVFANKQDLPDA---MKPHEIQEKLGLTRIR 141 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcC--------------------HhhcCCcEEEEEECcCCccC---CCHHHHHHHcCCCccC
Confidence 999999999998877666541 12356899999999998653 566666665422
Q ss_pred -cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 198 -NGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 198 -~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
..++++++||++|.||+++|++|++
T Consensus 142 ~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 142 DRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 2347899999999999999999864
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=2.1e-24 Score=190.08 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=119.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++++|. |||||+++|..++|... |+|.++. .+.. ..+.+++||++|++++..++..+++++|++|+||
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 468999998 99999999998887655 7776653 3444 3578999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-- 199 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~-- 199 (373)
|++++++++++..++..+... ...+++|++||+||+|+.+. .+.++..+...-..
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~ 149 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNE--------------------DELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLR 149 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcC--------------------HhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccC
Confidence 999999999888776665430 12357899999999999754 34444333222111
Q ss_pred ---CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 200 ---LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 200 ---~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+.++++||++|+||+++|++|++.+.+
T Consensus 150 ~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 236689999999999999999988764
No 100
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.92 E-value=7.6e-24 Score=182.02 Aligned_cols=155 Identities=27% Similarity=0.434 Sum_probs=134.3
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|. |||||+++++...|... +.+..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++++|||
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 7888887 99999999999988765 555443 5677788899999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~ 202 (373)
++++.+|+.+..|+..+... ....++|+++|+||+|+... +....++...+++.+++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piiiv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~ 139 (164)
T cd04139 81 ITDMESFTATAEFREQILRV--------------------KDDDNVPLLLVGNKCDLEDK-RQVSSEEAANLARQWGVPY 139 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEEccccccc-cccCHHHHHHHHHHhCCeE
Confidence 99999999999998888762 12357999999999999763 4467777888888889999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 203 METSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 203 ~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++||+++.|++++|+.|++.+.
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 140 VETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.92 E-value=3.6e-24 Score=186.28 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=123.3
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI 123 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~ 123 (373)
+++++|. |||||+++|.+..+... |+|.++. .+.+ ..+.+.+|||+|++++..++..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 4788887 99999999999877654 7776653 3444 357899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC----
Q psy18160 124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG---- 199 (373)
Q Consensus 124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~---- 199 (373)
+++.+|+++..|+..+.+. ....+.|++||+||+|+.. .++.++++++++..+
T Consensus 77 s~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~ 133 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTE--------------------KELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCG 133 (169)
T ss_pred CcHHHHHHHHHHHHHHhcC--------------------hhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCC
Confidence 9999999999998887651 1234689999999999964 267777777664322
Q ss_pred --CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 200 --LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 200 --~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+.++++||++|.||+++|++|++.+..
T Consensus 134 ~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 134 RSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 268899999999999999999987764
No 102
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.92 E-value=1.1e-23 Score=178.93 Aligned_cols=152 Identities=43% Similarity=0.724 Sum_probs=136.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||++++.+..+... |.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 36888997 99999999999998875 8888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++++++.+..|+..+.. ......|+++|+||+|+... .....++..+++..++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~---------------------~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 138 (159)
T cd00154 81 DITNRESFENLDKWLKELKE---------------------YAPENIPIILVGNKIDLEDQ-RQVSTEEAQQFAKENGLL 138 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEEccccccc-ccccHHHHHHHHHHcCCe
Confidence 99999999999999988877 23367899999999999633 457788899999988999
Q ss_pred EEEEcCCCCCCHHHHHHHHH
Q psy18160 202 FMETSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~ 221 (373)
++++||+++.|++++|++|+
T Consensus 139 ~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEEecCCCCCHHHHHHHHh
Confidence 99999999999999999886
No 103
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.92 E-value=6.1e-24 Score=187.40 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=129.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||++++..+.+... |.|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3578999997 99999999999888765 7777766555554 4467899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH--
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-- 197 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-- 197 (373)
|||++++.+++.+..|+.++... ....+.|++||+||+|+... +..++..+++..
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~ 138 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRF--------------------SENQGVPVLVLANKQDLPNA---LSVSEVEKLLALHE 138 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhh--------------------hhcCCCcEEEEEECcCcccc---CCHHHHHHHhCccc
Confidence 99999999999998888877651 12247899999999998643 445555554421
Q ss_pred ----cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 198 ----NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 198 ----~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
.+++++++||+++.||+++|++|++.+.+.+.
T Consensus 139 ~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 139 LSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred cCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 12468999999999999999999998865444
No 104
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.2e-23 Score=187.88 Aligned_cols=156 Identities=22% Similarity=0.324 Sum_probs=130.4
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|. |||||+++|+++.+... |++ ++..+.+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 4788887 99999999999988775 554 4556778888888999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-HcCCe
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE-ENGLL 201 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~-~~~~~ 201 (373)
++++.+|+.+..|+..+... ....++|++||+||+|+....+.+..++..+.+. ..+.+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 139 (198)
T cd04147 80 VDDPESFEEVERLREEILEV--------------------KEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCG 139 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCc
Confidence 99999999999998887762 2235799999999999965335566655555443 45678
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++||++|.||+++|++|++.+.
T Consensus 140 ~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 140 FVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999998765
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=4.9e-24 Score=183.69 Aligned_cols=148 Identities=19% Similarity=0.250 Sum_probs=115.1
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
++++++|. |||||++++..+.|... |+|.++. .+.+ ..+.+.+|||+|++++..++..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 47889987 99999999988888754 7776653 3444 35789999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH-HHHH----HH
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG-EAYA----EE 197 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~-~~~~----~~ 197 (373)
++++.+|+.+.+|+..+... ....++|++|++||+|+.+. ...++. ..+. ..
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~ 133 (159)
T cd04150 77 SNDRERIGEAREELQRMLNE--------------------DELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRN 133 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhc--------------------HHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCC
Confidence 99999999998877766431 12246899999999999653 233332 2221 11
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
.++.++++||++|+||+++|++|++
T Consensus 134 ~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 134 RNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 2345789999999999999999864
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.91 E-value=9e-24 Score=184.97 Aligned_cols=151 Identities=21% Similarity=0.230 Sum_probs=118.8
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++++|. |||||+++|..+++... |+|.++. .+.. ..+.+++|||+|++++..++..+++++|++|+||
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 478999997 99999999988877544 7776653 3444 3478999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-----
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE----- 196 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~----- 196 (373)
|++++++++++.+|+..+... ...+++|++||+||+|+.+. .+.++..+...
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~ 145 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNE--------------------DELRDAVILVFANKQDLPDA---MKAAEITEKLGLHSIR 145 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhC--------------------HhhcCCcEEEEEeCcCcccC---CCHHHHHHHhCccccC
Confidence 999999999998888776541 12357899999999999653 23333332221
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
...+.++++||++|.||+++|++|...+
T Consensus 146 ~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 146 DRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1223577999999999999999998765
No 107
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.91 E-value=1.9e-24 Score=187.28 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=119.4
Q ss_pred EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI 123 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~ 123 (373)
++++|. |||||+++|.++.+... |+|.++ +.+++..+.+.+||++|+++|..++..+++++|++++|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 578887 99999999999877665 777543 33455678899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH----HHHHHHHHHcC
Q psy18160 124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY----SEGEAYAEENG 199 (373)
Q Consensus 124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~----~e~~~~~~~~~ 199 (373)
+++.+|..+..|+..+.. . .+++|+++|+||.|+... +.++. .++.+++++.+
T Consensus 78 t~~~s~~~~~~~l~~~~~---------------------~-~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 134 (164)
T cd04162 78 ADSERLPLARQELHQLLQ---------------------H-PPDLPLVVLANKQDLPAA-RSVQEIHKELELEPIARGRR 134 (164)
T ss_pred CCHHHHHHHHHHHHHHHh---------------------C-CCCCcEEEEEeCcCCcCC-CCHHHHHHHhCChhhcCCCc
Confidence 999999999988887754 1 268999999999999765 32221 23456667778
Q ss_pred CeEEEEcCCC------CCCHHHHHHHHHH
Q psy18160 200 LLFMETSAKT------AMNVNEIFVEIAK 222 (373)
Q Consensus 200 ~~~~evSak~------~~gI~~lf~~L~~ 222 (373)
++++++||++ ++||+++|+.++.
T Consensus 135 ~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 135 WILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred eEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 8999999998 9999999998763
No 108
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.91 E-value=9.4e-24 Score=188.68 Aligned_cols=161 Identities=13% Similarity=0.182 Sum_probs=123.3
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-----CEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-----DVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-----~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
++++++|+ |||||+++|+++.|... |+|.++..+.+.++ +..+.++||||+|+++|..++..+|+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 47899998 99999999999998776 99988888888774 578999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH----HH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE----GE 192 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e----~~ 192 (373)
+|+|||+++++||+++..|+.++........+......... -......++|++|||||+|+.+. +.+..+. ..
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~--~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~ 157 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYD--SEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARG 157 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccc--ccccCCCCceEEEEEECccchhh-cccchHHHhhHhh
Confidence 99999999999999999999998763211000000000000 00012357999999999999765 4454443 44
Q ss_pred HHHHHcCCeEEEEcCCCCC
Q psy18160 193 AYAEENGLLFMETSAKTAM 211 (373)
Q Consensus 193 ~~~~~~~~~~~evSak~~~ 211 (373)
.+|++.+++.++.++++..
T Consensus 158 ~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 158 FVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred hHHHhcCCceEEEecCCcc
Confidence 6788999999999988654
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=3.4e-23 Score=187.25 Aligned_cols=161 Identities=26% Similarity=0.420 Sum_probs=138.5
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ 115 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad 115 (373)
+.+...++++++|. |||||+++++.+.+... |++.++....+..++..+.+++|||+|+++|..++..+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44455689999998 99999999998888765 8998888888888889999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160 116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195 (373)
Q Consensus 116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~ 195 (373)
++++|||++++.+|..+..|+..+... ..++|+++||||+|+.+ +.+.. +...++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~----------------------~~~~~i~lv~nK~Dl~~--~~~~~-~~~~~~ 138 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRV----------------------CENIPIVLVGNKVDVKD--RQVKA-RQITFH 138 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEECccCcc--ccCCH-HHHHHH
Confidence 999999999999999999999888761 25789999999999864 33333 334677
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+..++.++++||++|.|++++|.+|++.+...
T Consensus 139 ~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 139 RKKNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 88889999999999999999999999988743
No 110
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.91 E-value=3.7e-23 Score=179.26 Aligned_cols=152 Identities=30% Similarity=0.493 Sum_probs=127.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|++..+... |+. +.....+..++..+.+++||++|++++..+...+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 47899997 99999999999998544 443 334556677888999999999999999988999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc----------ccCHHH
Q psy18160 122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR----------CVEYSE 190 (373)
Q Consensus 122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----------~v~~~e 190 (373)
|++++.+|..+. .|+..+.. ...+.|+++|+||+|+..... .+..++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~----------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~ 137 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRH----------------------YCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEE 137 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHh----------------------hCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHH
Confidence 999999998876 57776655 224799999999999976521 345778
Q ss_pred HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHH
Q psy18160 191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~ 222 (373)
+.+++..++. +|+++||++|.|++++|++|++
T Consensus 138 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 138 GEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 8888888887 9999999999999999999875
No 111
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=1.5e-23 Score=184.85 Aligned_cols=155 Identities=18% Similarity=0.226 Sum_probs=120.2
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++++|. |||||++++..+.+... |+|.++. .+.. ..+.+++|||+|+++++.++..+++++|++|+||
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 478999997 99999999988877655 7776653 3444 4578999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-----H
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-----E 196 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-----~ 196 (373)
|++++++|+++.+++..+... ....++|++||+||.|+.+. +..++..... +
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~ 149 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSE--------------------DELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVR 149 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhC--------------------HhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCccc
Confidence 999999999988777665430 12246899999999998653 3333332221 1
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
...+.++++||++|.|++++|++|++.+.+++
T Consensus 150 ~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 150 QRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred CCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 11235679999999999999999998887543
No 112
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.91 E-value=4.7e-23 Score=176.22 Aligned_cols=154 Identities=31% Similarity=0.502 Sum_probs=133.0
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
+++++|. |||||++++++..+... +.+ +...+.+.+++..+.+++||++|++.+..++..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 4788887 99999999998876655 444 5556777788888999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLF 202 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~ 202 (373)
++++++++++..|...+... ......|+++|+||+|+... +.+..+++.++++.++.++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~ 138 (160)
T cd00876 80 ITDRESFEEIKGYREQILRV--------------------KDDEDIPIVLVGNKCDLENE-RQVSKEEGKALAKEWGCPF 138 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEECCccccc-ceecHHHHHHHHHHcCCcE
Confidence 99999999999988887762 12257899999999999764 5677888999999988999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHc
Q psy18160 203 METSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 203 ~evSak~~~gI~~lf~~L~~~i 224 (373)
+++||+++.|++++|++|++.+
T Consensus 139 ~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 139 IETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred EEeccCCCCCHHHHHHHHHhhC
Confidence 9999999999999999998753
No 113
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.91 E-value=1.9e-23 Score=182.24 Aligned_cols=150 Identities=18% Similarity=0.180 Sum_probs=120.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..++++++|. |||||+++|.+..+... |+|.. .+.+.++ .+.+.+|||+|++.+..++..+++++|++++|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4478999997 99999999998866544 66643 4455665 37789999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH----
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE---- 196 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~---- 196 (373)
||++++.+|..+..|+..+... ....++|++||+||+|+.+. ...+++.++.+
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~ 145 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQE--------------------ERLAGATLLILANKQDLPGA---LSEEEIREALELDKI 145 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhC--------------------hhhcCCCEEEEEECcccccC---CCHHHHHHHhCcccc
Confidence 9999999999998888776541 12357899999999999653 34555555543
Q ss_pred -HcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 197 -ENGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 197 -~~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
..+++++++||++|.|++++|++|+.
T Consensus 146 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 146 SSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 23568999999999999999999864
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=5.5e-23 Score=178.15 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=121.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
++++++|+ |||||+++|.++.|... +...++ .....+++..+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 37899998 99999999999998765 222232 3445667788999999999999888888888999999999999
Q ss_pred CCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC-HHHHHHHHHHcC-
Q psy18160 123 ITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE-YSEGEAYAEENG- 199 (373)
Q Consensus 123 ~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~-~~e~~~~~~~~~- 199 (373)
++++.+|+.+. .|+..+.. . ..++|+++|+||+|+.+...... .++...+++.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~---------------------~-~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 137 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRR---------------------L-GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE 137 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc
Confidence 99999999985 68777765 2 24789999999999976421111 233334444433
Q ss_pred -CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 200 -LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 200 -~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.+++++||+++.|++++|+.+.+.+.
T Consensus 138 ~~~~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 138 IETCVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred ccEEEEeccccccCHHHHHHHHHHHhc
Confidence 37999999999999999999988765
No 115
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.90 E-value=1.3e-22 Score=177.95 Aligned_cols=159 Identities=29% Similarity=0.405 Sum_probs=135.1
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.+++++|. |||||+++|.+..+... |.+..+ .+.+.+++..+.+++|||+|+++|..++..++..+|++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 47888887 99999999999988664 555444 466778888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|+++..+|+.+..|+..+.+. ....+.|+++|+||+|+... +.+..++...+++..+.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~ 139 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDM--------------------LGKESVPIVLVGNKSDLHTQ-RQVSTEEGKELAESWGAA 139 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEEchhhhhc-CccCHHHHHHHHHHcCCe
Confidence 999999999999988887662 22357899999999999754 556677778888888899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
++++||+++.|++++|.+|++.+....
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 140 FLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998886443
No 116
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=2.2e-22 Score=188.84 Aligned_cols=151 Identities=17% Similarity=0.290 Sum_probs=120.4
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC-------------EEEEEEEEeCCCcc
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD-------------VTIRFEIWDTAGQE 101 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~-------------~~v~l~i~Dt~G~e 101 (373)
+-++...+|++++|+ |||||+++|+++.|... |+|.++..+.+.+++ ..+.++||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 455667799999998 99999999999988765 999999888888753 57899999999999
Q ss_pred cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
+|..++..|++++|++|+|||++++.||+++..|+..+........+.. + ......++|++|||||+||..
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~-s--------~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLG-S--------GGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccc-c--------ccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999999999999999976311000000 0 000123689999999999965
Q ss_pred CC--cc---cCHHHHHHHHHHcCC
Q psy18160 182 SR--RC---VEYSEGEAYAEENGL 200 (373)
Q Consensus 182 ~~--~~---v~~~e~~~~~~~~~~ 200 (373)
.. +. +..+++++||+++++
T Consensus 166 ~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 166 KEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccHHHHHHHHHHcCC
Confidence 42 22 368899999999884
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.89 E-value=6.2e-23 Score=176.28 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=112.2
Q ss_pred EEEEEcC---ChhHHHHHhhhCcC-cCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVF-YPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~-~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
+++++|. |||||+++|.+..+ ... |+|..+. .+. ...+.+.+|||+|++++..++..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 3678887 99999999998764 322 6665432 233 24578899999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH---HH--
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY---AE-- 196 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~---~~-- 196 (373)
|++++.+|..+..|+..+.... .....++|++||+||+|+... ...++..+. ..
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~p~iiv~NK~Dl~~~---~~~~~~~~~l~~~~~~ 135 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHP------------------DIKHRRVPILFFANKMDLPDA---LTAVKITQLLGLENIK 135 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCc------------------ccccCCCCEEEEEeCccccCC---CCHHHHHHHhCCcccc
Confidence 9999999999888887765410 011257999999999999654 222232222 11
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
...++++++||++|.|++++|++|++
T Consensus 136 ~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 136 DKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CceEEEEEeeCCCCCchHHHHHHHhc
Confidence 12346899999999999999999864
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.89 E-value=1.9e-22 Score=173.14 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=115.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI 123 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~ 123 (373)
+++++|. |||||+++|.++.+... |++.++ ..+..+ ..+.+.+|||+|++++..++..+++++|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 4678887 99999999999988655 666554 344443 457899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH------HHH
Q psy18160 124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY------AEE 197 (373)
Q Consensus 124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~------~~~ 197 (373)
+++.++..+..|+..+... ....+.|+++|+||+|+... ...++.... +..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~ 134 (160)
T cd04156 78 SDEARLDESQKELKHILKN--------------------EHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSD 134 (160)
T ss_pred CcHHHHHHHHHHHHHHHhc--------------------hhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCC
Confidence 9999999998888776541 12257899999999998643 233333222 222
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
.+++++++||++|+||+++|++|++
T Consensus 135 ~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 135 RDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CcEEEEecccccCCChHHHHHHHhc
Confidence 3457999999999999999999864
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=4.3e-22 Score=174.05 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=117.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
..+++++|. |||||++++..+++... |++.++. .+.++ .+.+.+||++|++++...+..+++++|++++||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 468899997 99999999998887765 7776653 34444 477999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH-HHH----H
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE-AYA----E 196 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~-~~~----~ 196 (373)
|++++++|..+.+++..+... ....++|++|++||+|+... .+.++.. .+. +
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~--------------------~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~ 147 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAH--------------------EDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIR 147 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhc--------------------hhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccc
Confidence 999999999888777766541 12356899999999998653 3344332 222 2
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
..+++++++||++|.||+++|++|++
T Consensus 148 ~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 148 DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CCceEEEecccCCCCCHHHHHHHHhc
Confidence 34567999999999999999999874
No 120
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=4.4e-22 Score=209.08 Aligned_cols=215 Identities=18% Similarity=0.089 Sum_probs=142.0
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEE--EEEEEECCEEEEEEEEeCCCccc--------ccccchhh
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFI--TQTVCLDDVTIRFEIWDTAGQER--------YHTLAPMY 110 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~--~~~i~~~~~~v~l~i~Dt~G~e~--------~~~l~~~~ 110 (373)
...+++++|. |||||+|+|++...... ++|++.. ......++ ..+.+|||+|.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4467888887 99999999998875443 5554433 23333444 4588999999764 22334456
Q ss_pred ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
++.+|++++|+|+++.....+ ..|...+.. .+.|+++|+||+|+... ...
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~------------------------~~~pvIlV~NK~D~~~~-----~~~ 401 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR------------------------AGKPVVLAVNKIDDQAS-----EYD 401 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh------------------------cCCCEEEEEECcccccc-----hhh
Confidence 889999999999986432221 134444433 47899999999998542 112
Q ss_pred HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeec
Q psy18160 191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTM 269 (373)
Q Consensus 191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~ 269 (373)
..++.. +++ ..+++||++|.||+++|++|++.+........
T Consensus 402 ~~~~~~-lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~------------------------------------- 443 (712)
T PRK09518 402 AAEFWK-LGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSG------------------------------------- 443 (712)
T ss_pred HHHHHH-cCCCCeEEEECCCCCCchHHHHHHHHhccccccccc-------------------------------------
Confidence 222222 233 46799999999999999999987753110000
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeeccee
Q psy18160 270 ANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTK 347 (373)
Q Consensus 270 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~ 347 (373)
. . ......|++++|.+++|||||+++++...+ ...+.+|. .+.....+
T Consensus 444 ----------a---~--------~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT---------~d~~~~~~ 493 (712)
T PRK09518 444 ----------F---L--------TPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT---------RDPVDEIV 493 (712)
T ss_pred ----------c---c--------CCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC---------cCcceeEE
Confidence 0 0 000126899999999999999999998764 45555444 34433556
Q ss_pred eeCCeEEEEEehhhH
Q psy18160 348 NRLNNNVPITFVWVI 362 (373)
Q Consensus 348 ~v~~~~~~l~iw~~~ 362 (373)
.++|.++. |||++
T Consensus 494 ~~~~~~~~--liDTa 506 (712)
T PRK09518 494 EIDGEDWL--FIDTA 506 (712)
T ss_pred EECCCEEE--EEECC
Confidence 67887654 89988
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=2.6e-22 Score=172.32 Aligned_cols=147 Identities=20% Similarity=0.235 Sum_probs=111.6
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI 123 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~ 123 (373)
+++++|. |||||++++..+.+... |++.++. .+.. ..+.+++|||+|++++..++..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 4788887 99999999988877654 6666543 3333 347899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-HH----HHc
Q psy18160 124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-YA----EEN 198 (373)
Q Consensus 124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-~~----~~~ 198 (373)
+++.++....+++..+.+. ....++|++||+||+|+.+. ....+..+ +. +..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~piiiv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~ 133 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEE--------------------EELKGAVLLVFANKQDMPGA---LSEAEISEKLGLSELKDR 133 (158)
T ss_pred CCHHHHHHHHHHHHHHHhc--------------------hhhcCCcEEEEEeCCCCCCC---CCHHHHHHHhCccccCCC
Confidence 9999888776665544330 12247899999999998653 22233222 11 112
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
+.+++++||+++.||+++|++|++
T Consensus 134 ~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 134 TWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred cEEEEEeeccCCCCHHHHHHHHhc
Confidence 357999999999999999999875
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=1.5e-21 Score=172.78 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=121.3
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
..+++++|. |||||++++.++.+... |++.. ...+.+++ +.+.+||++|++++..++..+++++|++++|+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~ 94 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV 94 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 468899997 99999999999887654 55544 34556665 56889999999999989999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE---- 197 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~---- 197 (373)
|+++..+|.....|+..+... ....+.|++||+||+|+.. .+..++.+++.+.
T Consensus 95 D~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~ 151 (190)
T cd00879 95 DAADPERFQESKEELDSLLSD--------------------EELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTT 151 (190)
T ss_pred ECCcHHHHHHHHHHHHHHHcC--------------------ccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCccccc
Confidence 999999999888887776541 2235689999999999864 3666777666542
Q ss_pred ------------cCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 198 ------------NGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 198 ------------~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
..++++++||++++|++++|++|++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 224689999999999999999998653
No 123
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6.5e-22 Score=197.02 Aligned_cols=211 Identities=15% Similarity=0.079 Sum_probs=140.5
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCc--------ccccccchhhccC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQ--------ERYHTLAPMYYRN 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~--------e~~~~l~~~~~~~ 113 (373)
+++++|. |||||+|+|++...... +.|. +.....+.+++. .+.+|||+|. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 3678887 99999999999875432 3333 344455556664 5899999996 3344455667899
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
+|++++|+|..+..+..+. .+...+.+ .+.|+++|+||+|+.... . ...+
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~------------------------~~~piilVvNK~D~~~~~--~---~~~~ 128 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK------------------------SGKPVILVANKIDGKKED--A---VAAE 128 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH------------------------hCCCEEEEEECccCCccc--c---cHHH
Confidence 9999999999875444331 12222222 357999999999986541 1 1222
Q ss_pred HHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecccC
Q psy18160 194 YAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANS 272 (373)
Q Consensus 194 ~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~ 272 (373)
+ ..+++ +++++||++|.|++++++.+.+.+.......
T Consensus 129 ~-~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~----------------------------------------- 166 (429)
T TIGR03594 129 F-YSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEE----------------------------------------- 166 (429)
T ss_pred H-HhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccc-----------------------------------------
Confidence 2 35566 7999999999999999999987774311100
Q ss_pred CCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeC
Q psy18160 273 NNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRL 350 (373)
Q Consensus 273 ~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~ 350 (373)
......+|++++|.+++|||+|+++++.... ...+..|. .+.....+..+
T Consensus 167 -------------------~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt---------~~~~~~~~~~~ 218 (429)
T TIGR03594 167 -------------------EEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTT---------RDSIDIPFERN 218 (429)
T ss_pred -------------------cccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCce---------ECcEeEEEEEC
Confidence 0001237899999999999999999997653 23333333 23322344456
Q ss_pred CeEEEEEehhhHH
Q psy18160 351 NNNVPITFVWVIM 363 (373)
Q Consensus 351 ~~~~~l~iw~~~~ 363 (373)
|. .+.|||++-
T Consensus 219 ~~--~~~liDT~G 229 (429)
T TIGR03594 219 GK--KYLLIDTAG 229 (429)
T ss_pred Cc--EEEEEECCC
Confidence 65 678899863
No 124
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.87 E-value=1.8e-21 Score=168.98 Aligned_cols=148 Identities=17% Similarity=0.134 Sum_probs=113.9
Q ss_pred EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI 123 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~ 123 (373)
++++|. |||||+++|.+. +... |+|.. .+.+..+ .+.+++||++|+++++.++..|++++|++++|||+
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 678887 999999999977 4433 77754 3455554 47789999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH---HHHHHHHcC-
Q psy18160 124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE---GEAYAEENG- 199 (373)
Q Consensus 124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e---~~~~~~~~~- 199 (373)
+++.+|+++..|+..+... ....++|++||+||+|+.......+..+ ..+++++.+
T Consensus 77 s~~~s~~~~~~~l~~l~~~--------------------~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~ 136 (167)
T cd04161 77 SDDDRVQEVKEILRELLQH--------------------PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKS 136 (167)
T ss_pred CchhHHHHHHHHHHHHHcC--------------------ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCc
Confidence 9999999999998887651 1235789999999999976521111112 123333333
Q ss_pred -CeEEEEcCCCC------CCHHHHHHHHHH
Q psy18160 200 -LLFMETSAKTA------MNVNEIFVEIAK 222 (373)
Q Consensus 200 -~~~~evSak~~------~gI~~lf~~L~~ 222 (373)
+.++++||++| .|+++.|+||..
T Consensus 137 ~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 137 LCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 46788999998 899999999964
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=3.4e-21 Score=166.49 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=114.5
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCc------Cc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFY------PY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~------~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
+++++|. |||||++++.+.... .. |++.++. .+.++ ...+.+|||+|++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 3678887 999999999864321 11 6665553 45555 4678999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|+|+++++++..+..|+..+... ....++|++||+||+|+... +..++..++.+
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~ 133 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRN--------------------EALEGVPLLILANKQDLPDA---LSVEEIKEVFQ 133 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhC--------------------hhhcCCCEEEEEEccccccC---CCHHHHHHHhc
Confidence 99999999999999988888776551 22357899999999998653 44555555543
Q ss_pred H-------cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 197 E-------NGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 197 ~-------~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
. .+.+++++||++|.|++++|++|++
T Consensus 134 ~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 134 DKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 3 2457999999999999999999875
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.86 E-value=5.6e-21 Score=163.75 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=116.7
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI 123 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~ 123 (373)
+++++|. |||||++++++..+... |++... ..+.++ .+.+.+||++|++++..++..+++++|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 4788886 99999999999986555 666544 344554 46799999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-----c
Q psy18160 124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-----N 198 (373)
Q Consensus 124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-----~ 198 (373)
+++.++..+..|+..+... ....+.|+++|+||+|+... ...++..+.... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~piiiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~ 133 (158)
T cd00878 77 SDRERIEEAKEELHKLLNE--------------------EELKGVPLLIFANKQDLPGA---LSVSELIEKLGLEKILGR 133 (158)
T ss_pred CCHHHHHHHHHHHHHHHhC--------------------cccCCCcEEEEeeccCCccc---cCHHHHHHhhChhhccCC
Confidence 9999999998888777651 12357899999999998764 233444333322 3
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
..+++++||++|.|++++|++|+.
T Consensus 134 ~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 134 RWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred cEEEEEeeCCCCCCHHHHHHHHhh
Confidence 457999999999999999999875
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=4.6e-21 Score=167.69 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=113.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCc-------CcCc---------ceeeeEEEEEEEE-----CCEEEEEEEEeCCCccccc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVV-------FYPY---------LFSAAFITQTVCL-----DDVTIRFEIWDTAGQERYH 104 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~-------~~~~---------Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e~~~ 104 (373)
.++++|. |||||+++|++.. +... +.|.++..+.+.+ ++..+.+.+|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 4678887 9999999999742 1111 3455555544443 6778899999999999999
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR 184 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~ 184 (373)
.++..+++++|++|+|||+++..+++....|.... . .++|+++|+||+|+.+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~------------------------~~~~iiiv~NK~Dl~~~-- 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E------------------------NNLEIIPVINKIDLPSA-- 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H------------------------cCCCEEEEEECCCCCcC--
Confidence 99999999999999999999887777666554322 2 36789999999998643
Q ss_pred ccCHHHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 185 CVEYSEGEAYAEENGLL---FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 185 ~v~~~e~~~~~~~~~~~---~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
...+...++++.++++ ++++||++|.|++++|++|++.+.
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 135 -DPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred -CHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 1223345666666663 899999999999999999988763
No 128
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=6.3e-21 Score=190.27 Aligned_cols=208 Identities=17% Similarity=0.112 Sum_probs=136.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ce--eeeEEEEEEEECCEEEEEEEEeCCCccc--------ccccchhhcc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LF--SAAFITQTVCLDDVTIRFEIWDTAGQER--------YHTLAPMYYR 112 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Ti--g~~~~~~~i~~~~~~v~l~i~Dt~G~e~--------~~~l~~~~~~ 112 (373)
.+++++|. |||||+|+|++.+.... +. +.++....+.+++ ..+.+|||+|++. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36788887 99999999998875432 22 2344555666766 6789999999986 2223455688
Q ss_pred CCcEEEEEEECCCHhhHHH--HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGR--AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~--i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
++|++++|+|++++.+..+ +.+|+ .. .+.|+++|+||+|+.+. .+.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~------------------------~~~piilv~NK~D~~~~-----~~~ 127 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKIL---RK------------------------SNKPVILVVNKVDGPDE-----EAD 127 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH---HH------------------------cCCcEEEEEECccCccc-----hhh
Confidence 9999999999987644332 22332 22 26799999999997542 122
Q ss_pred HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeec
Q psy18160 191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTM 269 (373)
Q Consensus 191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~ 269 (373)
..++ ..+++ .++++||++|.|++++|+.++.........
T Consensus 128 ~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~--------------------------------------- 167 (435)
T PRK00093 128 AYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEE--------------------------------------- 167 (435)
T ss_pred HHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccc---------------------------------------
Confidence 2333 34565 489999999999999999998733210000
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc-c-cccccCCccccccccceeeeeccee
Q psy18160 270 ANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ-F-HEYQESTIGGECQSSHSISFSMPTK 347 (373)
Q Consensus 270 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~-f-~~~~~~Tig~~~~~~~~~~~~~~~~ 347 (373)
......++++++|.+++|||||+++++... . ...+..|. .+.....+
T Consensus 168 ----------------------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt---------~~~~~~~~ 216 (435)
T PRK00093 168 ----------------------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTT---------RDSIDTPF 216 (435)
T ss_pred ----------------------cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCce---------EEEEEEEE
Confidence 000124899999999999999999998653 2 23333232 23222333
Q ss_pred eeCCeEEEEEehhhH
Q psy18160 348 NRLNNNVPITFVWVI 362 (373)
Q Consensus 348 ~v~~~~~~l~iw~~~ 362 (373)
..++.. +.|||++
T Consensus 217 ~~~~~~--~~lvDT~ 229 (435)
T PRK00093 217 ERDGQK--YTLIDTA 229 (435)
T ss_pred EECCee--EEEEECC
Confidence 445554 4679986
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=1.4e-20 Score=166.03 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=117.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++++|. |||||++++.++.+... |.+... ..+.+++ +.+.+||++|++++..++..+++++|++++|+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv 92 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV 92 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 378999997 99999999999877654 555432 3444443 67899999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE---- 197 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~---- 197 (373)
|++++.++.....++..+... ....++|+++|+||+|+... ++.++..+...-
T Consensus 93 D~~~~~~~~~~~~~l~~l~~~--------------------~~~~~~piliv~NK~Dl~~~---~~~~~i~~~l~l~~~~ 149 (184)
T smart00178 93 DAYDKERFAESKRELDALLSD--------------------EELATVPFLILGNKIDAPYA---ASEDELRYALGLTNTT 149 (184)
T ss_pred ECCcHHHHHHHHHHHHHHHcC--------------------hhhcCCCEEEEEeCccccCC---CCHHHHHHHcCCCccc
Confidence 999999999988887776541 12357899999999998643 556655543311
Q ss_pred --------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 198 --------NGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 198 --------~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
....++++||++++|+++++++|...
T Consensus 150 ~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 150 GSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 12358999999999999999999764
No 130
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.85 E-value=5.4e-20 Score=161.10 Aligned_cols=153 Identities=23% Similarity=0.277 Sum_probs=123.4
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
....+++++|- |||||++++..+.+... |.|.+ ...+.+++ +.+.+||.+|++.++.+|+.|++++|++||
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence 46689999996 99999999998776655 76654 45666765 568999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH---
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE--- 196 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~--- 196 (373)
|+|.++.+.+.+..+.+..+... ....++|++|++||+|+.+. .+.++......
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~--------------------~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~ 144 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLND--------------------PELKDIPILILANKQDLPDA---MSEEEIKEYLGLEK 144 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTS--------------------GGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGG
T ss_pred EEecccceeecccccchhhhcch--------------------hhcccceEEEEeccccccCc---chhhHHHhhhhhhh
Confidence 99999999999888777776551 22357999999999998764 55555554332
Q ss_pred ---HcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 197 ---ENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 197 ---~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
...+.++.+||++|+|+.+.|+||.+++
T Consensus 145 l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 145 LKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 2235689999999999999999998764
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=162.98 Aligned_cols=160 Identities=33% Similarity=0.447 Sum_probs=129.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||+++|.++.|... |++..+........+..+.+.+|||+|+++|+.++..|+++++++++||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 79999997 99999999999999976 8888887777777766899999999999999999999999999999999
Q ss_pred ECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCHH
Q psy18160 122 DITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEYS 189 (373)
Q Consensus 122 D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~~ 189 (373)
|.++. .+++....|+..+.. ......|+++|+||+|+.... +.....
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~---------------------~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 144 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRE---------------------LAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLL 144 (219)
T ss_pred ecccchhhhHHHHHHHHHHHH---------------------hCCCCceEEEEecccccccchhHHHHHHhhhhcCcchh
Confidence 99994 455666789888877 233579999999999997752 122333
Q ss_pred HHHHHHHHc---CCeEEEEcCC--CCCCHHHHHHHHHHHcchhh
Q psy18160 190 EGEAYAEEN---GLLFMETSAK--TAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 190 e~~~~~~~~---~~~~~evSak--~~~gI~~lf~~L~~~i~~~~ 228 (373)
......... ...++++|++ ++.+|+++|..++..+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 145 VLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred hhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 333332222 3348999999 99999999999998886543
No 132
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=1.6e-19 Score=153.55 Aligned_cols=146 Identities=18% Similarity=0.273 Sum_probs=113.6
Q ss_pred EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEEC
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDI 123 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~ 123 (373)
++++|. |||||++++.+.+|... |++.++. .+..++ +.+.+||++|++++..++..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 578887 99999999999988876 6665543 344443 7899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-----HHc
Q psy18160 124 TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-----EEN 198 (373)
Q Consensus 124 ~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-----~~~ 198 (373)
+++.++..+..|+..+... ....++|+++|+||+|+.+. ...++..... ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~ 134 (159)
T cd04159 78 ADRTALEAAKNELHDLLEK--------------------PSLEGIPLLVLGNKNDLPGA---LSVDELIEQMNLKSITDR 134 (159)
T ss_pred CCHHHHHHHHHHHHHHHcC--------------------hhhcCCCEEEEEeCccccCC---cCHHHHHHHhCcccccCC
Confidence 9999998888777766541 12357899999999998653 1222222211 122
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
..+++++||+++.|++++|++|++
T Consensus 135 ~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 135 EVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ceEEEEEEeccCCChHHHHHHHhh
Confidence 367899999999999999999864
No 133
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.83 E-value=2.1e-20 Score=157.43 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=99.4
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCc-----ccccccchhhccCCcEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQ-----ERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-----e~~~~l~~~~~~~ad~iil 119 (373)
+++++|. |||||+++|.+..+... |++.++. + .+|||+|+ +.|..+.. .++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEEE
Confidence 6888997 99999999999877544 6554432 1 58999998 23444433 4889999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.++.. ..|... ...|+++|+||+|+.+ +....+++.++++..+
T Consensus 69 v~d~~~~~s~~~-~~~~~~---------------------------~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~ 118 (142)
T TIGR02528 69 VQSATDPESRFP-PGFASI---------------------------FVKPVIGLVTKIDLAE--ADVDIERAKELLETAG 118 (142)
T ss_pred EecCCCCCcCCC-hhHHHh---------------------------ccCCeEEEEEeeccCC--cccCHHHHHHHHHHcC
Confidence 999999998754 233221 0138999999999865 3356677788888877
Q ss_pred C-eEEEEcCCCCCCHHHHHHHHH
Q psy18160 200 L-LFMETSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 200 ~-~~~evSak~~~gI~~lf~~L~ 221 (373)
. +++++||+++.|++++|++|+
T Consensus 119 ~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 119 AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CCcEEEEecCCCCCHHHHHHHHh
Confidence 6 799999999999999999875
No 134
>KOG1673|consensus
Probab=99.83 E-value=8.1e-20 Score=150.32 Aligned_cols=162 Identities=21% Similarity=0.338 Sum_probs=138.0
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ 115 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad 115 (373)
..+.-.+++.++|+ |||||+-+|.++++.+. |.|+.+..+++.+.+..+.+.|||.+|++++..+.+....++-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 34556789999999 99999999999999866 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC----cccCHHHH
Q psy18160 116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR----RCVEYSEG 191 (373)
Q Consensus 116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~----~~v~~~e~ 191 (373)
+++|+||++.+.++..+.+|+.+.+.. ...-+ .++||+|.|+.-.. ...-..++
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~---------------------NktAi-PilvGTKyD~fi~lp~e~Q~~I~~qa 152 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGL---------------------NKTAI-PILVGTKYDLFIDLPPELQETISRQA 152 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhcc---------------------CCccc-eEEeccchHhhhcCCHHHHHHHHHHH
Confidence 999999999999999999999998772 22334 46799999974320 11112346
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+.+|+.++.+.|.+|+.++.||+.+|.-+..++.
T Consensus 153 r~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 153 RKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLF 186 (205)
T ss_pred HHHHHHhCCcEEEeeccccccHHHHHHHHHHHHh
Confidence 7788889999999999999999999998877665
No 135
>KOG0073|consensus
Probab=99.82 E-value=2.4e-19 Score=149.06 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=125.5
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..+++.++|- ||||++++|.+...... |.| |..+++.+++ +.+++||.+||...++.|+.||..+||+|+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 3578999995 99999999998875544 555 5567777755 7799999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH------HHHH
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE------GEAY 194 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e------~~~~ 194 (373)
+|.+|+..+++...-+..+.. .......|++|++||.|+... +..++ ..++
T Consensus 91 vDssD~~r~~e~~~~L~~lL~--------------------eerlaG~~~Lvlank~dl~~~---l~~~~i~~~~~L~~l 147 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLV--------------------EERLAGAPLLVLANKQDLPGA---LSLEEISKALDLEEL 147 (185)
T ss_pred EECchHHHHHHHHHHHHHHHh--------------------hhhhcCCceEEEEecCcCccc---cCHHHHHHhhCHHHh
Confidence 999999999988766665543 022346899999999999754 33332 3456
Q ss_pred HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++...++.+-|||.+|+++.+.|.||+..+..
T Consensus 148 ~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 148 AKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 67788999999999999999999999988865
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=2.3e-19 Score=155.12 Aligned_cols=147 Identities=17% Similarity=0.083 Sum_probs=102.5
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc---------chhhc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL---------APMYY 111 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l---------~~~~~ 111 (373)
+++++|. |||||+++|.+..+... |.+.. ...+.. +.+.+.+|||+|+...... .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLF--VGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCccccee--EEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 5788887 99999999999887543 22222 122222 3468999999998432110 00111
Q ss_pred cCCcEEEEEEECCCHhhH--HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 112 RNAQAAIIVYDITNQDTF--GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf--~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
..+|++++|+|++++.++ +....|+..+.. . ..+.|+++|+||+|+... +.+ .
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~---------------------~-~~~~pvilv~NK~Dl~~~-~~~--~ 132 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKP---------------------L-FKNKPVIVVLNKIDLLTF-EDL--S 132 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHh---------------------h-cCcCCeEEEEEccccCch-hhH--H
Confidence 236899999999987654 555667776654 1 247899999999999654 222 2
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+..++++..+.+++++||++|.|++++|+++.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 133 EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 24556666678899999999999999999998765
No 137
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=3.8e-19 Score=154.67 Aligned_cols=147 Identities=21% Similarity=0.212 Sum_probs=114.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..++++++|. |||||++++.+..+... |.|.++ ..+..++ ..+.+||++|+.++...+..+++++|++++|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 3678999997 99999999999877544 666443 4555554 5688999999999988889999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
+|+++..++.....|+..+... ....++|+++++||+|+... ...++ +.+..++
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~p~ivv~nK~D~~~~---~~~~~---i~~~l~~ 142 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEE--------------------EKLAGVPVLVFANKQDLATA---APAEE---IAEALNL 142 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhC--------------------hhhcCCCEEEEEECCCCccC---CCHHH---HHHHcCC
Confidence 9999999998888777665441 12347899999999998653 22222 3333332
Q ss_pred --------eEEEEcCCCCCCHHHHHHHHHH
Q psy18160 201 --------LFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 201 --------~~~evSak~~~gI~~lf~~L~~ 222 (373)
+++++||++|+|++++|++|++
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 143 HDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 138
>KOG0070|consensus
Probab=99.80 E-value=1.3e-18 Score=148.48 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=127.0
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
.....++|+++|= ||||+++++..+++... |+|.. ...+++. .+.|.+||.+||++++.+|+.|+++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfn--VE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFN--VETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccc--eeEEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 3456688999994 99999999999988877 88754 4566675 57899999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
|||+|.+|++.+.++.+-+..+... ....+.|+++.+||.|++.. .+..++.+....
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~--------------------~~l~~~~llv~aNKqD~~~a---ls~~ei~~~L~l 145 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAE--------------------PELRNAPLLVFANKQDLPGA---LSAAEITNKLGL 145 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcC--------------------cccCCceEEEEechhhcccc---CCHHHHHhHhhh
Confidence 9999999999999988666655541 23468999999999999875 455554443322
Q ss_pred -----cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 198 -----NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 198 -----~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
....+..++|.+|+|+.|.+++|...+..
T Consensus 146 ~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 146 HSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred hccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 23457889999999999999999988763
No 139
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=9.6e-19 Score=151.45 Aligned_cols=151 Identities=17% Similarity=0.100 Sum_probs=106.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcc----cccccchhhcc---C
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQE----RYHTLAPMYYR---N 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----~~~~l~~~~~~---~ 113 (373)
.++++|. |||||++++.+.+.... |.... ...+.+++ ...+.+|||||+. .+..+...+++ .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~--~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN--LGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc--ceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 4788887 99999999997654322 22211 12233333 2478999999973 22334444444 5
Q ss_pred CcEEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160 114 AQAAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE 192 (373)
Q Consensus 114 ad~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~ 192 (373)
+|++++|+|++++ .+++.+..|.+.+.... ......|+++|+||+|+.+. . ...+...
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~-------------------~~~~~~p~ivv~NK~Dl~~~-~-~~~~~~~ 137 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYN-------------------PELLEKPRIVVLNKIDLLDE-E-ELFELLK 137 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhC-------------------ccccccccEEEEEchhcCCc-h-hhHHHHH
Confidence 9999999999999 79999999988876620 11246899999999998664 2 2233444
Q ss_pred HHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 193 AYAEEN-GLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 193 ~~~~~~-~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.+.... +.+++++||+++.|++++|++|++.
T Consensus 138 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 138 ELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred HHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 555553 6789999999999999999998864
No 140
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.80 E-value=3.1e-18 Score=144.74 Aligned_cols=150 Identities=25% Similarity=0.370 Sum_probs=119.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
++++++|. |||||++++....+... +.+.++....+.+++..+.+.+||++|++++..++..+++.++++++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 58899997 99999999999985544 6667776666778887788999999999999999999999999999999
Q ss_pred ECCCH-hhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 122 DITNQ-DTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 122 D~~~~-~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|+... .++.... .|+..+... ...+.|+++|+||+|+... + ...+....+.....
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~---------------------~~~~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~ 138 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHH---------------------AESNVPIILVGNKIDLRDA-K-LKTHVAFLFAKLNG 138 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHh---------------------cccCCcEEEEEEcccCCcc-h-hhHHHHHHHhhccC
Confidence 99887 7777765 676666551 2227899999999999664 2 33333334444445
Q ss_pred CeEEEEcCCCCCCHHHHHHHH
Q psy18160 200 LLFMETSAKTAMNVNEIFVEI 220 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L 220 (373)
.+++++||+++.|++++|+.|
T Consensus 139 ~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 139 EPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred CceEEeecCCCCCHHHHHHHh
Confidence 789999999999999999886
No 141
>KOG0096|consensus
Probab=99.80 E-value=2.1e-19 Score=152.88 Aligned_cols=155 Identities=28% Similarity=0.439 Sum_probs=129.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..+.+++|+ |||+++.|.+.++|... |+|+....-...-+...+++..|||+|+|.+..+...||-.+.+++++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 344555554 99999999999999987 999887654444454569999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++.+-++.++.+|...+.+ ...++||+++|||.|.... ++. .+...+.+..++
T Consensus 90 FdVtsr~t~~n~~rwhrd~~r----------------------v~~NiPiv~cGNKvDi~~r--~~k-~k~v~~~rkknl 144 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVR----------------------VRENIPIVLCGNKVDIKAR--KVK-AKPVSFHRKKNL 144 (216)
T ss_pred eeeeehhhhhcchHHHHHHHH----------------------HhcCCCeeeeccceecccc--ccc-cccceeeecccc
Confidence 999999999999999998877 3467999999999998663 222 223345566789
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.|+++||+++.|.+..|.++++.+..
T Consensus 145 ~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 145 QYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred eeEEeecccccccccchHHHhhhhcC
Confidence 99999999999999999999998873
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.80 E-value=1.1e-18 Score=149.91 Aligned_cols=144 Identities=13% Similarity=0.022 Sum_probs=99.3
Q ss_pred EEEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
-++++|. |||||+++|++. .+... |++..+ ..+.+++ ...+.+|||+|+++|......+++++|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF--AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee--EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 4677887 999999999963 33321 444333 3455542 35789999999999877677788999999
Q ss_pred EEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-ccCHHHHHH
Q psy18160 118 IIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CVEYSEGEA 193 (373)
Q Consensus 118 ilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v~~~e~~~ 193 (373)
++|+|+++ +.+++.+. .+.. . ...|+++|+||+|+....+ ....++..+
T Consensus 79 i~V~d~~~~~~~~~~~~~~----~~~~---------------------~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~ 131 (164)
T cd04171 79 LLVVAADEGIMPQTREHLE----ILEL---------------------L--GIKRGLVVLTKADLVDEDWLELVEEEIRE 131 (164)
T ss_pred EEEEECCCCccHhHHHHHH----HHHH---------------------h--CCCcEEEEEECccccCHHHHHHHHHHHHH
Confidence 99999987 33433322 2222 1 1248999999999965311 112234444
Q ss_pred HHHH---cCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 194 YAEE---NGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 194 ~~~~---~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
+.+. .+.+++++||+++.|++++|+.+.+
T Consensus 132 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 132 LLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 4444 4678999999999999999998754
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.79 E-value=7.2e-19 Score=157.49 Aligned_cols=151 Identities=20% Similarity=0.109 Sum_probs=108.3
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccc---------cccchh
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERY---------HTLAPM 109 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~---------~~l~~~ 109 (373)
...++++++|. |||||++++++..+... ....+.....+.+++. ..+.+|||+|..+. .... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 44578999997 99999999999875432 1112233344555543 36889999997321 1111 1
Q ss_pred hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
.+.++|++++|+|++++.++..+..|...+.. ....++|+++|+||+|+... ..
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~---------------------~~~~~~~viiV~NK~Dl~~~-~~---- 170 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKE---------------------LGAEDIPMILVLNKIDLLDD-EE---- 170 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHH---------------------cCcCCCCEEEEEEccccCCh-HH----
Confidence 36789999999999999988888777766655 23356899999999998654 11
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
...++...+.+++++||+++.|++++|++|...+
T Consensus 171 -~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 171 -LEERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred -HHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 1144455567899999999999999999997653
No 144
>KOG3883|consensus
Probab=99.79 E-value=5.8e-18 Score=139.12 Aligned_cols=159 Identities=18% Similarity=0.252 Sum_probs=132.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccc-cccchhhccCCc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCL-DDVTIRFEIWDTAGQERY-HTLAPMYYRNAQ 115 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~-~~l~~~~~~~ad 115 (373)
...++++.|. |||+++.+++-++..+. |++.. +...++- +|-+-.+.|+||+|...+ ..+-+.|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi-Y~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI-YVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh-eeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 3467888887 99999999998877665 77644 3445544 344557899999998777 567788999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160 116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195 (373)
Q Consensus 116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~ 195 (373)
++++|||..|++||+.++.+..+|.+. .....+||++++||+|+.++ +.++.+-+..||
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~--------------------KdKKEvpiVVLaN~rdr~~p-~~vd~d~A~~Wa 145 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKH--------------------KDKKEVPIVVLANKRDRAEP-REVDMDVAQIWA 145 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhc--------------------cccccccEEEEechhhcccc-hhcCHHHHHHHH
Confidence 999999999999999988666666653 34568999999999999866 889999999999
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+.-.+..++++|++...+-+.|..|+..+.+
T Consensus 146 ~rEkvkl~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 146 KREKVKLWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred hhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence 9999999999999999999999999998874
No 145
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=166.98 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=126.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE--EEEEEEECCEEEEEEEEeCCCccccc---------ccchhhc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF--ITQTVCLDDVTIRFEIWDTAGQERYH---------TLAPMYY 111 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~--~~~~i~~~~~~v~l~i~Dt~G~e~~~---------~l~~~~~ 111 (373)
..++++|. |||||+||+++.+.+.. +.|++. .....++.+.. |.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 35777886 99999999999998877 555543 33455565544 8899999987433 1233457
Q ss_pred cCCcEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 112 RNAQAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
..||++|||+|....-+-. .+.+|+. . .+.|++||+||+|-... .+
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr---~------------------------~~kpviLvvNK~D~~~~-----e~ 129 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR---R------------------------SKKPVILVVNKIDNLKA-----EE 129 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH---h------------------------cCCCEEEEEEcccCchh-----hh
Confidence 7999999999997744332 2333432 2 46899999999997532 22
Q ss_pred HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceee
Q psy18160 190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILT 268 (373)
Q Consensus 190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~ 268 (373)
.+.+|+ .+|+ +.+.+||.+|.|+.+|.+++++.+. ..+.....
T Consensus 130 ~~~efy-slG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~---------------------------------- 173 (444)
T COG1160 130 LAYEFY-SLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEEEEE---------------------------------- 173 (444)
T ss_pred hHHHHH-hcCCCCceEeehhhccCHHHHHHHHHhhcC-Cccccccc----------------------------------
Confidence 233343 4554 6899999999999999999998874 11110000
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc
Q psy18160 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ 321 (373)
Q Consensus 269 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~ 321 (373)
.....+|+.++|.+++|||+|+|++++.+
T Consensus 174 ------------------------~~~~~ikiaiiGrPNvGKSsLiN~ilgee 202 (444)
T COG1160 174 ------------------------EETDPIKIAIIGRPNVGKSSLINAILGEE 202 (444)
T ss_pred ------------------------ccCCceEEEEEeCCCCCchHHHHHhccCc
Confidence 00124899999999999999999999764
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.79 E-value=1e-18 Score=155.42 Aligned_cols=141 Identities=12% Similarity=0.084 Sum_probs=102.8
Q ss_pred EEEEEcC---ChhHHHHHhhh--CcCcCc---------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccch
Q psy18160 49 AQIWLKD---RVDCMTQIVIN--VVFYPY---------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAP 108 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~--~~~~~~---------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~ 108 (373)
.++++|. |||||+++|+. +.|... +.|.++..+...++.+.+.+.+|||+|+++|..++.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 6788887 99999999997 444321 356666666666666678899999999999999999
Q ss_pred hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
.+++++|++++|||+++.. +.....|+..+.. .++|+++|+||+|+.........
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~------------------------~~~p~iiv~NK~Dl~~~~~~~~~ 138 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE------------------------LGLKPIVVINKIDRPDARPEEVV 138 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH------------------------cCCCEEEEEECCCCCCCCHHHHH
Confidence 9999999999999998742 2333334443332 36799999999999654222234
Q ss_pred HHHHHHHHH-------cCCeEEEEcCCCCCCHH
Q psy18160 189 SEGEAYAEE-------NGLLFMETSAKTAMNVN 214 (373)
Q Consensus 189 ~e~~~~~~~-------~~~~~~evSak~~~gI~ 214 (373)
+++.+++.. .+++++++||++|.|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 139 DEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred HHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 455555432 36789999999997763
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.79 E-value=6.1e-19 Score=157.54 Aligned_cols=149 Identities=20% Similarity=0.149 Sum_probs=102.9
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCC-----------cccccccchhh
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAG-----------QERYHTLAPMY 110 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G-----------~e~~~~l~~~~ 110 (373)
...+++++|. |||||++++.+..+... ..|.++....+.++ .+.+|||+| +++++.++..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 4578899997 99999999999887654 55666555555444 488999999 57777777677
Q ss_pred cc-C---CcEEEEEEECCCHhhHHHH-HHHHH--------HHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCC
Q psy18160 111 YR-N---AQAAIIVYDITNQDTFGRA-KSWVK--------ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177 (373)
Q Consensus 111 ~~-~---ad~iilv~D~~~~~Sf~~i-~~~l~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~ 177 (373)
++ + ++++++|+|.++. ..+ .+|.. ++.. . ....++|+++|+||+
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~l~~-----------------~---~~~~~~p~iiv~NK~ 140 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSF---IEIIERWEGRGEIPIDVEMFD-----------------F---LRELGIPPIVAVNKM 140 (201)
T ss_pred HHhhhhhheEEEEEEeCccc---cccccccccCCCcHHHHHHHH-----------------H---HHHcCCCeEEEEECc
Confidence 64 3 4677777776542 222 12211 0111 0 011478999999999
Q ss_pred CCCCCCcccCHHHHHHHHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 178 DLPTSRRCVEYSEGEAYAEENGL---------LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 178 Dl~~~~~~v~~~e~~~~~~~~~~---------~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
|+.+. + .+...++++.+++ +++++||++| ||+++|++|++.+..
T Consensus 141 Dl~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 141 DKIKN-R---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cccCc-H---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 98653 1 3455666666664 4899999999 999999999987753
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=1.1e-17 Score=142.79 Aligned_cols=138 Identities=17% Similarity=0.092 Sum_probs=102.4
Q ss_pred ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc------cchhhcc--CCcEEEEEEECC
Q psy18160 56 RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT------LAPMYYR--NAQAAIIVYDIT 124 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~------l~~~~~~--~ad~iilv~D~~ 124 (373)
|||||++++++..+... +.+.+.....+.+++ ..+.+|||||++.+.. ++..++. ++|++++|+|++
T Consensus 8 GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 85 (158)
T cd01879 8 GKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDAT 85 (158)
T ss_pred CHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCC
Confidence 99999999998864443 333444456677765 4689999999987765 3566665 999999999998
Q ss_pred CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160 125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME 204 (373)
Q Consensus 125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e 204 (373)
++++.. .|...+.. .++|+++|+||+|+.+. ..+.. +...+++.++.++++
T Consensus 86 ~~~~~~---~~~~~~~~------------------------~~~~~iiv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~ 136 (158)
T cd01879 86 NLERNL---YLTLQLLE------------------------LGLPVVVALNMIDEAEK-RGIKI-DLDKLSELLGVPVVP 136 (158)
T ss_pred cchhHH---HHHHHHHH------------------------cCCCEEEEEehhhhccc-ccchh-hHHHHHHhhCCCeEE
Confidence 765432 33333333 36799999999999754 22322 345677778899999
Q ss_pred EcCCCCCCHHHHHHHHHHHc
Q psy18160 205 TSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 205 vSak~~~gI~~lf~~L~~~i 224 (373)
+||+++.|++++|+.|.+.+
T Consensus 137 iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 137 TSARKGEGIDELKDAIAELA 156 (158)
T ss_pred EEccCCCCHHHHHHHHHHHh
Confidence 99999999999999988753
No 149
>KOG4423|consensus
Probab=99.76 E-value=5.6e-20 Score=155.74 Aligned_cols=166 Identities=27% Similarity=0.416 Sum_probs=138.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCE-EEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDV-TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~-~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++.++|. |||+++.|+....|+.. |||++|..+....+++ .+++++||.+||++|..+...||+.+++.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 45666666 99999999999999887 9999998888888764 56899999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||+++..+|+...+|.+++... +.-.....+|+++.+||||....-.........++.+++|+
T Consensus 106 fdvt~s~tfe~~skwkqdldsk-----------------~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf 168 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSK-----------------LQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF 168 (229)
T ss_pred EEccccccccHHHHHHHhccCc-----------------ccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc
Confidence 9999999999999999887541 11134567899999999998654122224566778888887
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 201 -LFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 201 -~~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
.++|+|+|.+.|++|+-+.|++.+.-+...
T Consensus 169 ~gwtets~Kenkni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 169 EGWTETSAKENKNIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred cceeeeccccccChhHHHHHHHHHHHhhccC
Confidence 499999999999999999999988766533
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.76 E-value=6.2e-18 Score=163.29 Aligned_cols=188 Identities=20% Similarity=0.152 Sum_probs=121.8
Q ss_pred Cccccchhhhhh---hhhhhhhhhhhccCCCCcccc-c-cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ce
Q psy18160 6 GTCGSTLQTIEY---ALTVRVLKLKTQIPKGNWFSM-M-SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LF 74 (373)
Q Consensus 6 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Ti 74 (373)
|+.|+.+..++. .+..++..++..+........ . ..+.....++++++|. |||||+|+|++..+... ..
T Consensus 143 ~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~t 222 (351)
T TIGR03156 143 GTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFA 222 (351)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcc
Confidence 345555543333 455555555554433221111 1 1222345578999997 99999999999875432 11
Q ss_pred eeeEEEEEEEECCEEEEEEEEeCCCcc---------cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCC
Q psy18160 75 SAAFITQTVCLDDVTIRFEIWDTAGQE---------RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP 145 (373)
Q Consensus 75 g~~~~~~~i~~~~~~v~l~i~Dt~G~e---------~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~ 145 (373)
..++..+.+.+++. ..+.+|||+|.. .|.... ..+++||++++|+|++++.+++.+..|...+..
T Consensus 223 T~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~---- 296 (351)
T TIGR03156 223 TLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEE---- 296 (351)
T ss_pred ccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHH----
Confidence 23445567777432 368899999972 222222 247899999999999999888887766665554
Q ss_pred CCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
....+.|+++|+||+|+.+. . +...+. ....+++++||++|.|++++++.|.+.
T Consensus 297 -----------------l~~~~~piIlV~NK~Dl~~~-~-----~v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 297 -----------------LGAEDIPQLLVYNKIDLLDE-P-----RIERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -----------------hccCCCCEEEEEEeecCCCh-H-----hHHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 22347899999999998643 1 111121 223468999999999999999998764
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=1.2e-17 Score=144.13 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=102.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++|. |||||+++|...++... ++..++....+..+ +....+.+|||+|++.|..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 3678887 99999999999988765 22223322333333 23567899999999999988888999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH----H
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE----E 197 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~----~ 197 (373)
|+++....+... .+..+.. .++|+++|+||+|+.........++...+.. .
T Consensus 82 d~~~~~~~~~~~-~~~~~~~------------------------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 136 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA------------------------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDE 136 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH------------------------cCCCEEEEEEceecccccHHHHHHHHHHhhcccccc
Confidence 998743211111 1122222 3679999999999864311000111111111 1
Q ss_pred --cCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 198 --NGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 198 --~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
..++++++||+++.|+++++++|.+..
T Consensus 137 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 137 WGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 135799999999999999999998654
No 152
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.74 E-value=6.7e-17 Score=134.92 Aligned_cols=144 Identities=38% Similarity=0.633 Sum_probs=113.0
Q ss_pred ChhHHHHHhhhCcC-cCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHH
Q psy18160 56 RVDCMTQIVINVVF-YPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGR 131 (373)
Q Consensus 56 GKTsLl~rl~~~~~-~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~ 131 (373)
|||||++++.+... ... |. .++........+....+.+||++|+..+......+++.+|++++|+|++++.++..
T Consensus 8 GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 86 (157)
T cd00882 8 GKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFEN 86 (157)
T ss_pred cHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 99999999999877 232 44 67777777777778899999999999888888888999999999999999999998
Q ss_pred HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH-HHHHHHHcCCeEEEEcCCCC
Q psy18160 132 AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE-GEAYAEENGLLFMETSAKTA 210 (373)
Q Consensus 132 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e-~~~~~~~~~~~~~evSak~~ 210 (373)
...|...... .......|+++|+||+|+... ....... ...+......+++++|++++
T Consensus 87 ~~~~~~~~~~--------------------~~~~~~~~~ivv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 145 (157)
T cd00882 87 VKEWLLLILI--------------------NKEGENIPIILVGNKIDLPEE-RVVSEEELAEQLAKELGVPYFETSAKTG 145 (157)
T ss_pred HHHHHHHHHH--------------------hhccCCCcEEEEEeccccccc-cchHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 8877322221 034568999999999998754 2122211 34455566789999999999
Q ss_pred CCHHHHHHHHH
Q psy18160 211 MNVNEIFVEIA 221 (373)
Q Consensus 211 ~gI~~lf~~L~ 221 (373)
.|+++++++|.
T Consensus 146 ~~i~~~~~~l~ 156 (157)
T cd00882 146 ENVEELFEELA 156 (157)
T ss_pred CChHHHHHHHh
Confidence 99999999875
No 153
>PRK11058 GTPase HflX; Provisional
Probab=99.74 E-value=2.2e-17 Score=163.11 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=124.9
Q ss_pred Cccccchhhhhh---hhhhhhhhhhhccCCCCcccc-cc-CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ce
Q psy18160 6 GTCGSTLQTIEY---ALTVRVLKLKTQIPKGNWFSM-MS-GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LF 74 (373)
Q Consensus 6 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Ti 74 (373)
|+.|+++..+|. .+..+...++..+........ .. .+..+...+++++|. |||||+|++++.++... ..
T Consensus 151 g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~t 230 (426)
T PRK11058 151 GLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFA 230 (426)
T ss_pred CCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCC
Confidence 788999999987 344444444444433211111 11 122234467888887 99999999998775432 12
Q ss_pred eeeEEEEEEEECCEEEEEEEEeCCCcccc--cccchh------hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCC
Q psy18160 75 SAAFITQTVCLDDVTIRFEIWDTAGQERY--HTLAPM------YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPN 146 (373)
Q Consensus 75 g~~~~~~~i~~~~~~v~l~i~Dt~G~e~~--~~l~~~------~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~ 146 (373)
+.+.....+.+++. ..+.+|||+|..+. ..++.. .+++||++++|+|++++.+++.+..|...+..
T Consensus 231 Tld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~e----- 304 (426)
T PRK11058 231 TLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEE----- 304 (426)
T ss_pred CcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHH-----
Confidence 23344455666543 24679999998442 222222 36899999999999999888887655554444
Q ss_pred CCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 147 IDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL-FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~-~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
....++|+++|+||+|+... . .. .. . ....+.+ ++++||++|.|+++++++|.+.+.
T Consensus 305 ----------------l~~~~~pvIiV~NKiDL~~~-~-~~--~~-~-~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 305 ----------------IDAHEIPTLLVMNKIDMLDD-F-EP--RI-D-RDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ----------------hccCCCCEEEEEEcccCCCc-h-hH--HH-H-HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 12247899999999998642 1 11 11 1 1123555 488999999999999999998875
No 154
>KOG0075|consensus
Probab=99.74 E-value=8.6e-18 Score=137.23 Aligned_cols=147 Identities=18% Similarity=0.286 Sum_probs=114.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
+.+.++|= |||||+|..+.+.|.+. |.|.. ..++....+.+.+||.+||.+|+++|..|+++++++++|+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn----mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcccccce----eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 45666663 99999999999999988 77644 3355666788999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-- 199 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~-- 199 (373)
|..+++......+-+..+.. +.....+|++++|||.|+++. .+.. ++...+|
T Consensus 97 Daad~~k~~~sr~EL~~LL~--------------------k~~l~gip~LVLGnK~d~~~A---L~~~---~li~rmgL~ 150 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLD--------------------KPSLTGIPLLVLGNKIDLPGA---LSKI---ALIERMGLS 150 (186)
T ss_pred ecCCcccchhhHHHHHHHhc--------------------chhhcCCcEEEecccccCccc---ccHH---HHHHHhCcc
Confidence 99998877666543333322 134568999999999999875 3332 2333444
Q ss_pred ------CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 200 ------LLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 200 ------~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+..|.+|+++..||+.+.+||.+.-
T Consensus 151 sitdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 151 SITDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred ccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 3589999999999999999998653
No 155
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=4.4e-17 Score=156.23 Aligned_cols=155 Identities=16% Similarity=0.035 Sum_probs=111.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccchh---hccC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLAPM---YYRN 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~~~---~~~~ 113 (373)
.+.++|- |||||++++++.+.... |+.... ..+.++ +...+.+||+||.-+ ...+... +++.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~--G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL--GVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE--EEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 3667775 99999999998653322 443332 334442 224588999999742 2234444 3557
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
++++++|+|+++.++++.+..|..++..+. ....+.|++||+||+|+.+. ..+..++...
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~-------------------~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~ 296 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYS-------------------PELADKPRILVLNKIDLLDE-EEEREKRAAL 296 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhh-------------------hhcccCCeEEEEECcccCCc-hhHHHHHHHH
Confidence 999999999998888999999988887621 11246899999999999754 3233344555
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+++..+.+++++||++++||+++|++|.+.+.+
T Consensus 297 ~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 297 ELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 566667899999999999999999999987753
No 156
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.73 E-value=5e-17 Score=166.85 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=114.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCc-------CcCc---------ceeeeEEEEEEEE-----CCEEEEEEEEeCCCcccc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVV-------FYPY---------LFSAAFITQTVCL-----DDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~-------~~~~---------Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e~~ 103 (373)
-.++++|. |||||++||+... +... +.|.++..+.+.+ ++..+.+.||||||+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 35677776 9999999998742 1111 3466665555443 567789999999999999
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR 183 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~ 183 (373)
...+..+++.+|++|+|+|+++..+++....|...+. .++|+++|+||+|+...
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-------------------------~~ipiIiViNKiDl~~~- 137 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-------------------------NDLEIIPVINKIDLPSA- 137 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-------------------------cCCCEEEEEECcCCCcc-
Confidence 9999999999999999999999777776665544322 35799999999998643
Q ss_pred cccCHHHHHHHHHHcCC---eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 184 RCVEYSEGEAYAEENGL---LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 184 ~~v~~~e~~~~~~~~~~---~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
...+...++++.+++ +++++||++|.||+++|+.|++.+..
T Consensus 138 --~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 138 --DPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred --CHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 112233455666665 48999999999999999999988753
No 157
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.73 E-value=3.9e-17 Score=133.21 Aligned_cols=111 Identities=23% Similarity=0.369 Sum_probs=85.7
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcC----c-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYP----Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~----~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
|++++|+ |||||+++|++..+.. . +.+.++......+......+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 6889998 9999999999998871 1 444455555667777777799999999999988888889999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D 178 (373)
||++++.||+.+.+++..+... . ....++|++|||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~------------------~-~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNI------------------R-KRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHH------------------H-HHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHH------------------H-ccCCCCCEEEEEeccC
Confidence 9999999999986654444431 1 1235699999999998
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=3.5e-17 Score=164.65 Aligned_cols=154 Identities=18% Similarity=0.093 Sum_probs=109.5
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCc----------ccccccc-
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQ----------ERYHTLA- 107 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~----------e~~~~l~- 107 (373)
..++++++|. |||||+|+|++.++... +.+.+.....+.+++.. +.+|||+|. +.|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4589999997 99999999999875422 33445555677777765 469999995 3333332
Q ss_pred hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-c
Q psy18160 108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC-V 186 (373)
Q Consensus 108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~-v 186 (373)
..+++++|++++|+|++++.++.++. ++..+.. .+.|++||+||+|+.+.... .
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~------------------------~~~piIiV~NK~Dl~~~~~~~~ 342 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE------------------------AGRALVLAFNKWDLVDEDRRYY 342 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEECcccCChhHHHH
Confidence 23578999999999999998888764 4444433 46899999999999653111 1
Q ss_pred CHHHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 187 EYSEGEA-YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 187 ~~~e~~~-~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..++..+ ++.....+++++||++|.||+++|+.+++.+..
T Consensus 343 ~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 343 LEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred HHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1112221 222234689999999999999999999887654
No 159
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.73 E-value=5.8e-18 Score=155.87 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=79.5
Q ss_pred ccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 101 ERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 101 e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
++|..+.+.+++++|++++|||++++. +|+.+.+|+..+.. .++|++||+||+||
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------------------------~~i~~vIV~NK~DL 79 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------------------------QNIEPIIVLNKIDL 79 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------CCCCEEEEEECccc
Confidence 789999999999999999999999887 99999999986654 57899999999999
Q ss_pred CCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160 180 PTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 180 ~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~ 221 (373)
.+. +.+..+.+..+ ...+++++++||+++.||+++|+.+.
T Consensus 80 ~~~-~~~~~~~~~~~-~~~g~~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 80 LDD-EDMEKEQLDIY-RNIGYQVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred CCC-HHHHHHHHHHH-HHCCCeEEEEecCCchhHHHHHhhhc
Confidence 654 33433444444 45789999999999999999998764
No 160
>KOG0071|consensus
Probab=99.73 E-value=8.7e-17 Score=130.38 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=119.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++++|= ||||++.++.-+..... |+| |..+++.+ +.+.|.+||.+|+++.+.+|++||.++.++|||.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~ 92 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 92 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcccccccc--eeEEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence 468888884 99999999998877766 665 55667777 4578999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-----H
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA-----E 196 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~-----~ 196 (373)
|..+++..+++..-+..+.. .....+.|++|.+||.|+++. .+++|+..+. +
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~--------------------~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r 149 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIIN--------------------DREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIR 149 (180)
T ss_pred eccchhhHHHHHHHHHHHhC--------------------CHhhhcceEEEEecCcccccc---cCHHHHHHHhcccccc
Confidence 99998777776632222222 144568999999999999876 5566665543 2
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
....-+.++||.+|+++.|-|.+|...+.
T Consensus 150 ~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 150 DRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred CCccEeeccccccchhHHHHHHHHHhhcc
Confidence 23355789999999999999999986553
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=3.2e-17 Score=141.13 Aligned_cols=136 Identities=11% Similarity=0.067 Sum_probs=95.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc----hhhccCCcEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA----PMYYRNAQAAIIV 120 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~----~~~~~~ad~iilv 120 (373)
+++++|. |||||+|++.+..-... |.+.+ +++. .+|||||+......+ ...++++|++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 5778886 99999999876532111 33332 2222 269999973222111 2237899999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
+|+++..++. ..|+..+ ..+.|+++++||+|+.+ ...+...++++..++
T Consensus 72 ~d~~~~~s~~--~~~~~~~-------------------------~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~ 120 (158)
T PRK15467 72 HGANDPESRL--PAGLLDI-------------------------GVSKRQIAVISKTDMPD----ADVAATRKLLLETGF 120 (158)
T ss_pred EeCCCccccc--CHHHHhc-------------------------cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCC
Confidence 9999887653 2333221 13568999999999854 345667778878775
Q ss_pred --eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 201 --LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 201 --~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+++++||++++||+++|+.+.+.+.+
T Consensus 121 ~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 121 EEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 89999999999999999999887754
No 162
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.72 E-value=1.1e-16 Score=158.97 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=111.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc--------chhh
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL--------APMY 110 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l--------~~~~ 110 (373)
..++++++|. |||||+|+|++..+... +.+.++....+.+++.. +.+|||+|+.++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 3478999997 99999999998764322 33456666777787754 689999998665432 2357
Q ss_pred ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
++++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+... +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~------------------------~~~piIlV~NK~Dl~~~-------~ 326 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK------------------------SKKPFILVLNKIDLKIN-------S 326 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh------------------------CCCCEEEEEECccCCCc-------c
Confidence 8899999999999998887765 6555433 46799999999998542 2
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
...+++.++.+++++||++ .||+++|+.|.+.+.+.
T Consensus 327 ~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 327 LEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred hhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 2345667788999999998 69999999999887643
No 163
>PRK15494 era GTPase Era; Provisional
Probab=99.72 E-value=9.1e-17 Score=154.84 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=105.8
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--cee--eeEEEEEEEECCEEEEEEEEeCCCcc-cccccch-------h
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFS--AAFITQTVCLDDVTIRFEIWDTAGQE-RYHTLAP-------M 109 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e-~~~~l~~-------~ 109 (373)
....+++++|. |||||+|+|++..+... +.+ .++....+..++ ..+.+|||||+. .+..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 34578999997 99999999999988643 111 233334555555 357999999984 3333322 2
Q ss_pred hccCCcEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 110 YYRNAQAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
.++++|++++|+|..+ +|.... .|+..+.. .+.|+++|+||+|+.+. ..
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~------------------------~~~p~IlViNKiDl~~~----~~ 177 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS------------------------LNIVPIFLLNKIDIESK----YL 177 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh------------------------cCCCEEEEEEhhcCccc----cH
Confidence 4679999999999764 455554 34444443 24567889999998642 24
Q ss_pred HHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 189 SEGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 189 ~e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.++.+++...+ ..++++||++|.|++++|++|...+..
T Consensus 178 ~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 178 NDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred HHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 55666665554 579999999999999999999988764
No 164
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.71 E-value=9.8e-17 Score=142.42 Aligned_cols=153 Identities=13% Similarity=0.033 Sum_probs=99.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhC----cC---cCc-----ceeeeEEEEEEE----------ECCEEEEEEEEeCCCccc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINV----VF---YPY-----LFSAAFITQTVC----------LDDVTIRFEIWDTAGQER 102 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~----~~---~~~-----Tig~~~~~~~i~----------~~~~~v~l~i~Dt~G~e~ 102 (373)
++++++|. |||||+++|+.. .+ ... |++..+....+. .++..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 46889997 999999999972 11 111 555555444443 123467899999999865
Q ss_pred ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
+........+.+|++++|+|+++.........+. .... .+.|+++|+||+|+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~------------------------~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI------------------------LCKKLIVVLNKIDLIPE 135 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH------------------------cCCCEEEEEECcccCCH
Confidence 4322223345789999999998754443332221 1111 25699999999998642
Q ss_pred C-cccCHHHHHHHHH-------HcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 183 R-RCVEYSEGEAYAE-------ENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 183 ~-~~v~~~e~~~~~~-------~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
. .....++..+... ..+++++++||+++.|++++++.|..++.
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 136 EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1 1112233322211 13578999999999999999999998875
No 165
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.71 E-value=1.1e-16 Score=149.69 Aligned_cols=147 Identities=16% Similarity=0.047 Sum_probs=102.4
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccccc-cc-------chhhcc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH-TL-------APMYYR 112 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~-~l-------~~~~~~ 112 (373)
+++++|. |||||+|++++.++... |.... .+.+...+. ..+.+|||||..+.. .+ ...+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~--i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR--ISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc--EEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6788887 99999999999876543 22211 223333332 468999999975432 11 234678
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE 192 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~ 192 (373)
++|++++|+|+++..+++ ..++..+.. .+.|+++|+||+|+... ....+...
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~------------------------~~~p~ilV~NK~Dl~~~--~~~~~~~~ 130 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN------------------------LKRPVVLTRNKLDNKFK--DKLLPLID 130 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh------------------------cCCCEEEEEECeeCCCH--HHHHHHHH
Confidence 999999999999877664 333443333 36799999999998642 22223344
Q ss_pred HHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 193 AYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 193 ~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.++...+. +++++||++|.|++++++.|.+.+..
T Consensus 131 ~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 131 KYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred HHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 55555554 79999999999999999999988754
No 166
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=1.4e-16 Score=135.55 Aligned_cols=140 Identities=16% Similarity=0.044 Sum_probs=96.3
Q ss_pred EEcC---ChhHHHHHhhhCcCc--Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cchhhccCCcE
Q psy18160 52 WLKD---RVDCMTQIVINVVFY--PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LAPMYYRNAQA 116 (373)
Q Consensus 52 vlG~---GKTsLl~rl~~~~~~--~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~~~~~~~ad~ 116 (373)
++|. |||||++++++.... .. ....+........++ ..+.+|||+|.+.+.. ....+++.+|+
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5665 999999999987532 22 222233334455554 5688999999987654 33456789999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|+|..+..+.... .+...+.. .+.|+++|+||+|+.+. ... ...+.
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~------------------------~~~piiiv~nK~D~~~~-~~~-----~~~~~ 128 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRK------------------------SKKPVILVVNKVDNIKE-EDE-----AAEFY 128 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHh------------------------cCCCEEEEEECcccCCh-HHH-----HHHHH
Confidence 9999999876544432 12222222 25899999999998664 111 22334
Q ss_pred HcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 197 ENGL-LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 197 ~~~~-~~~evSak~~~gI~~lf~~L~~~i 224 (373)
..++ +++++||+++.|++++|++|++.+
T Consensus 129 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 129 SLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred hcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 4566 789999999999999999998754
No 167
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=3.8e-16 Score=149.62 Aligned_cols=152 Identities=16% Similarity=0.076 Sum_probs=108.7
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc----cccchhhcc---C
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY----HTLAPMYYR---N 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~----~~l~~~~~~---~ 113 (373)
.++++|. |||||++++++.+.... |.... ...+.+++ ...+.+|||||..+. ..+...+++ .
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~--ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPN--LGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCE--EEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 4667776 99999999998764322 33322 23444543 356899999997532 234445544 6
Q ss_pred CcEEEEEEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 114 AQAAIIVYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 114 ad~iilv~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
+|++++|+|+++. ++++.+..|.+++..+. ....+.|++||+||+|+.+. . ...+.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~-------------------~~l~~kp~IIV~NK~DL~~~-~-~~~~~ 294 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS-------------------PELAEKPRIVVLNKIDLLDE-E-ELAEL 294 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhh-------------------hhhccCCEEEEEeCccCCCh-H-HHHHH
Confidence 9999999999987 67888888887776521 11246899999999999654 2 22334
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.+++++.++.+++++||++++||++++++|.+.+
T Consensus 295 ~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 295 LKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 4556667788999999999999999999998754
No 168
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=3.3e-16 Score=138.96 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=107.4
Q ss_pred cccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCc----------c
Q psy18160 38 MMSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQ----------E 101 (373)
Q Consensus 38 ~~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~----------e 101 (373)
++++.+....++++++|. |||||++++++.++... ++|.+........ ...+.||||+|. +
T Consensus 15 ~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 15 KLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHH
Confidence 466667778889999997 99999999999764433 5554433222222 257899999994 3
Q ss_pred cccccchhhccCC---cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160 102 RYHTLAPMYYRNA---QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178 (373)
Q Consensus 102 ~~~~l~~~~~~~a---d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D 178 (373)
++..+...+++.+ +++++|+|.+++.+.... ++...+.. .+.|+++++||+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~------------------------~~~~~iiv~nK~D 146 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE------------------------YGIPVLIVLTKAD 146 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH------------------------cCCcEEEEEECcc
Confidence 4444555566544 678899998876543321 11122222 3578999999999
Q ss_pred CCCCC-cccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 179 LPTSR-RCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 179 l~~~~-~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+.+.. .....+++.+.......+++++||+++.|++++++.|.+.+.
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 86531 111223344444444678999999999999999999987664
No 169
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.69 E-value=2.8e-16 Score=137.97 Aligned_cols=149 Identities=17% Similarity=0.059 Sum_probs=105.1
Q ss_pred EEEEcC---ChhHHHHHhhhCcCcCc-------------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFYPY-------------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA 107 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~~~-------------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~ 107 (373)
++++|. |||||++++++...... .+..+.....+... ...+.+|||+|+..+...+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHHH
Confidence 677776 99999999998876643 11112222223333 4578999999999888888
Q ss_pred hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-cc
Q psy18160 108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CV 186 (373)
Q Consensus 108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v 186 (373)
..+++.+|++++|+|..++.+.... +++..+.. .+.|+++|+||+|+..... ..
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~------------------------~~~~i~iv~nK~D~~~~~~~~~ 134 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE------------------------GGLPIIVAINKIDRVGEEDLEE 134 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH------------------------CCCCeEEEEECCCCcchhcHHH
Confidence 8999999999999999876644322 33333322 4789999999999975211 11
Q ss_pred CHHHHHHHHHH--------------cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 187 EYSEGEAYAEE--------------NGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 187 ~~~e~~~~~~~--------------~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
..++..+..+. ...+++++||+++.|++++|.+|.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 22333333333 3468999999999999999999998774
No 170
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=1.5e-16 Score=138.13 Aligned_cols=153 Identities=19% Similarity=0.114 Sum_probs=101.3
Q ss_pred EcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccc---hhhccCCcEE
Q psy18160 53 LKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLA---PMYYRNAQAA 117 (373)
Q Consensus 53 lG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~---~~~~~~ad~i 117 (373)
+|. |||||++++++.++... |....+ ..+.+++ ...+.+|||||..+ ...+. ..+++++|++
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 565 99999999999875211 333332 3344441 34579999999732 22332 2346789999
Q ss_pred EEEEECCCH------hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 118 IIVYDITNQ------DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 118 ilv~D~~~~------~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
++|+|++++ .+++++..|...+....... +. ....+.|+++|+||+|+... +.......
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~ 143 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLET-------------IL-GLLTAKPVIYVLNKIDLDDA-EELEEELV 143 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhh-------------HH-HHHhhCCeEEEEEchhcCch-hHHHHHHH
Confidence 999999988 57888877777765410000 00 00146899999999999654 22222212
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.......+.+++++||+++.|++++++++...
T Consensus 144 ~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 144 RELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 33444456789999999999999999998764
No 171
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.69 E-value=4.5e-16 Score=132.25 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=101.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc--------chhhcc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL--------APMYYR 112 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l--------~~~~~~ 112 (373)
++++++|. |||||++++.+..+... +...++....+..++ ..+.+|||+|...+... ...+++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 47888887 99999999998875432 222334344455554 46789999998665432 224577
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE 192 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~ 192 (373)
.+|++++|+|++++.+......+.. ....|+++|+||+|+.+... .
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~---------------------------~~~~~vi~v~nK~D~~~~~~-~------ 125 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL---------------------------PADKPIIVVLNKSDLLPDSE-L------ 125 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh---------------------------hcCCCEEEEEEchhcCCccc-c------
Confidence 9999999999998877766543221 24689999999999976421 1
Q ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.....+.+++++||+++.|+++++++|...+
T Consensus 126 -~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 -LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 3344567899999999999999999987654
No 172
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=1.1e-15 Score=156.32 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=105.0
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
....++++|. |||||+++|.+.++... ++..+.....+.+++. ..+.||||||++.|..++...++.+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3467888887 99999999999877664 2333333445555433 268899999999999999999999999999
Q ss_pred EEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 120 VYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 120 v~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
|+|+++. .+.+.+ ..+. ..++|+++++||+|+... ..++..+.+.
T Consensus 165 VVda~dgv~~qT~e~i----~~~~------------------------~~~vPiIVviNKiDl~~~----~~e~v~~~L~ 212 (587)
T TIGR00487 165 VVAADDGVMPQTIEAI----SHAK------------------------AANVPIIVAINKIDKPEA----NPDRVKQELS 212 (587)
T ss_pred EEECCCCCCHhHHHHH----HHHH------------------------HcCCCEEEEEECcccccC----CHHHHHHHHH
Confidence 9999873 333322 1222 246899999999998642 2344444333
Q ss_pred HcC---------CeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 197 ENG---------LLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 197 ~~~---------~~~~evSak~~~gI~~lf~~L~~ 222 (373)
..+ .+++++||++|.|++++|++|..
T Consensus 213 ~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 213 EYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 332 47999999999999999999864
No 173
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=2e-15 Score=150.37 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=105.6
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--cee--eeEEEEEEEECCEEEEEEEEeCCCcccccccc----------
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYHTLA---------- 107 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~---------- 107 (373)
...++++++|. |||||+|++++.+.... ..| .+.....+..++. .+.+|||+|..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 34588999997 99999999998764332 222 2333344555554 57899999986554332
Q ss_pred -hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 108 -PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 108 -~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
..+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+. ..
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~------------------------~~~~iiiv~NK~Dl~~~--~~ 300 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE------------------------AGKALVIVVNKWDLVKD--EK 300 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH------------------------cCCcEEEEEECcccCCC--HH
Confidence 23678999999999999887776653 3333333 36799999999999721 12
Q ss_pred CHHHHHHH-HHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 187 EYSEGEAY-AEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 187 ~~~e~~~~-~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..++..+. ... .+.+++++||++|.|++++|+++.+....
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 301 TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22222222 122 24689999999999999999999876643
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.67 E-value=2.7e-15 Score=129.46 Aligned_cols=149 Identities=16% Similarity=0.065 Sum_probs=99.2
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc----------c-ch
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT----------L-AP 108 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~----------l-~~ 108 (373)
.++++++|. |||||++++++..+... ....+.....+..++.. +.+|||+|..+... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 367889997 99999999998764322 11222333445555544 67999999754311 1 12
Q ss_pred hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
..++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+... +....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~------------------------~~~~~iiv~nK~Dl~~~-~~~~~ 133 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE------------------------EGKALVIVVNKWDLVEK-DSKTM 133 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh------------------------cCCCEEEEEeccccCCc-cHHHH
Confidence 346789999999999988776543 23333322 35799999999998754 21222
Q ss_pred HHHHH-HHHHc----CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 189 SEGEA-YAEEN----GLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 189 ~e~~~-~~~~~----~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
++..+ +.+.. ..+++++||+++.|++++++.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 134 KEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 22222 22333 3689999999999999999988753
No 175
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.67 E-value=6.1e-16 Score=154.37 Aligned_cols=142 Identities=19% Similarity=0.144 Sum_probs=106.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc--------chhhc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL--------APMYY 111 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l--------~~~~~ 111 (373)
.++++++|. |||||+|+|++.+.... ....++....+.+++. .+.+|||+|.+++... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 368899997 99999999999875322 2234555666777664 5789999998765442 22368
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
+++|++++|||++++.++++...|.. ..+.|+++|+||+|+.+. ....
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~---------------------------~~~~piiiV~NK~DL~~~-~~~~---- 340 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE---------------------------LKDKPVIVVLNKADLTGE-IDLE---- 340 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh---------------------------cCCCCcEEEEEhhhcccc-chhh----
Confidence 89999999999999888775543322 146799999999999653 1111
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
...+.+++++||++|.|+++++++|.+.+..
T Consensus 341 ----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 341 ----EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ----hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 3345689999999999999999999987753
No 176
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.67 E-value=1e-15 Score=157.45 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=110.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCc--C---------cCc-----ceeeeEEEEEEEE-----CCEEEEEEEEeCCCccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVV--F---------YPY-----LFSAAFITQTVCL-----DDVTIRFEIWDTAGQER 102 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~--~---------~~~-----Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e~ 102 (373)
...++++|. |||||+.+|+... + .+. +.|.++....+.+ +++.+.+.||||+|+++
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 446777776 9999999998631 1 111 3455444433333 56678999999999999
Q ss_pred ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
|...+..+++.+|++|+|+|+++....+....|.... . .++|+++|+||+|+...
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~------------------------~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E------------------------NDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H------------------------CCCCEEEEEECCCCCcc
Confidence 9998999999999999999999876655555554322 2 36789999999998653
Q ss_pred CcccCHHHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 183 RRCVEYSEGEAYAEENGLL---FMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 183 ~~~v~~~e~~~~~~~~~~~---~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
. ..+...++.+.++++ ++++||++|.||++++++|.+.+..
T Consensus 142 -~--~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 142 -D--PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -c--HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1 122233455555654 8999999999999999999988763
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.66 E-value=6.6e-16 Score=135.53 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=98.5
Q ss_pred ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcc----------c
Q psy18160 39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQE----------R 102 (373)
Q Consensus 39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----------~ 102 (373)
..+.++....+++++|. |||||+|++++..+... ++|.+.....+..++ .+.+|||+|.. .
T Consensus 10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~ 86 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEK 86 (179)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHH
Confidence 34556667789999998 99999999999864322 555444333344443 58899999952 3
Q ss_pred ccccchhhccC---CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 103 YHTLAPMYYRN---AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 103 ~~~l~~~~~~~---ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
+..+...|++. +|++++|+|.+++.+..+.. ++..+.. .+.|+++|+||+|+
T Consensus 87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~------------------------~~~pviiv~nK~D~ 141 (179)
T TIGR03598 87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE------------------------RGIPVLIVLTKADK 141 (179)
T ss_pred HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEECccc
Confidence 34444556654 58999999998865555442 2233322 36799999999998
Q ss_pred CCCC-cccCHHHHHHHHHHcC--CeEEEEcCCCCCCHH
Q psy18160 180 PTSR-RCVEYSEGEAYAEENG--LLFMETSAKTAMNVN 214 (373)
Q Consensus 180 ~~~~-~~v~~~e~~~~~~~~~--~~~~evSak~~~gI~ 214 (373)
.... .....+++++..+..+ .+++++||++|+|++
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 142 LKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 6431 1122344555555543 479999999999974
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.65 E-value=1.5e-15 Score=157.72 Aligned_cols=147 Identities=15% Similarity=0.115 Sum_probs=106.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++|. |||||+++|....+... |.....+...+..++....+.||||||++.|..++..+++.+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4456778886 99999999998877654 333333333444455568899999999999999999999999999
Q ss_pred EEEEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160 118 IIVYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194 (373)
Q Consensus 118 ilv~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~ 194 (373)
|+|+|+++. .+++.+. .+.. .++|++|++||+|+... ..++..+.
T Consensus 323 ILVVDA~dGv~~QT~E~I~----~~k~------------------------~~iPiIVViNKiDl~~~----~~e~v~~e 370 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAIN----YIQA------------------------ANVPIIVAINKIDKANA----NTERIKQQ 370 (742)
T ss_pred EEEEECcCCCChhhHHHHH----HHHh------------------------cCceEEEEEECCCcccc----CHHHHHHH
Confidence 999999874 3333322 1222 46899999999998653 12222221
Q ss_pred -------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 195 -------AEENG--LLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 195 -------~~~~~--~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
...++ ++++++||++|.||+++|+.|....
T Consensus 371 L~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 371 LAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 22233 6899999999999999999987653
No 179
>KOG0076|consensus
Probab=99.65 E-value=2.7e-16 Score=132.21 Aligned_cols=156 Identities=23% Similarity=0.245 Sum_probs=119.4
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCc------CcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhc
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVV------FYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYY 111 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~------~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~ 111 (373)
++.+-++++|- |||||+.+..... ..+. |+|... -++.++ ...+.+||.+||+..+++|..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence 34456778885 9999998875431 1112 666554 455555 34588999999999999999999
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
..++++|+++|.++++-|++...-++.+... ....++|+++.+||.|+.+. ....+.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~--------------------E~leg~p~L~lankqd~q~~---~~~~El 147 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVEN--------------------EKLEGAPVLVLANKQDLQNA---MEAAEL 147 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHH--------------------HHhcCCchhhhcchhhhhhh---hhHHHH
Confidence 9999999999999999999988777766551 44578999999999999765 333343
Q ss_pred HH---HHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 192 EA---YAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 192 ~~---~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.. .+... ..++.+|||.+|+||++...|+++.+.+.
T Consensus 148 ~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 148 DGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred HHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 33 33333 26799999999999999999999988754
No 180
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=3.8e-15 Score=146.52 Aligned_cols=151 Identities=19% Similarity=0.150 Sum_probs=108.6
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccchhhc---cC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLAPMYY---RN 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~~~~~---~~ 113 (373)
.++++|- |||||++++++.+.... |....+. .+.+++ ...+.+||+||..+ ...+...|+ +.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 5777776 99999999998764322 4443332 334431 34688999999743 223445554 45
Q ss_pred CcEEEEEEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 114 AQAAIIVYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 114 ad~iilv~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
++++++|+|+++. +++++...|..++..+. ....+.|++||+||+|+... .+.
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~-------------------~~L~~kP~IVV~NK~DL~~~-----~e~ 292 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN-------------------PRLLERPQIVVANKMDLPEA-----EEN 292 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhc-------------------hhccCCcEEEEEeCCCCcCC-----HHH
Confidence 9999999999864 67777788887776621 11246899999999998432 344
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..++++.++.+++++||++++|+++++++|.+.+.+
T Consensus 293 l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 293 LEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred HHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 566777777889999999999999999999887753
No 181
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.62 E-value=4.8e-15 Score=152.14 Aligned_cols=148 Identities=17% Similarity=0.070 Sum_probs=107.4
Q ss_pred EEEEEcC---ChhHHHHHhhhC---cCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINV---VFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~---~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
.++++|. |||||+++|++. .+.+. +++.++....+.+++ ..+.+||+||+++|......++.++|++++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 4677776 999999999963 33332 444455555666666 678999999999998877788899999999
Q ss_pred EEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcc-cCHHHHHHH
Q psy18160 120 VYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRC-VEYSEGEAY 194 (373)
Q Consensus 120 v~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~-v~~~e~~~~ 194 (373)
|+|+++ +.+++.+. .+.. .++| ++||+||+|+.+.... ...+++.++
T Consensus 80 VVDa~~G~~~qT~ehl~----il~~------------------------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~ 131 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLA----VLDL------------------------LGIPHTIVVITKADRVNEEEIKRTEMFMKQI 131 (581)
T ss_pred EEECCCCCcHHHHHHHH----HHHH------------------------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999988 45554442 2222 2456 9999999999754111 123345566
Q ss_pred HHHc----CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 195 AEEN----GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 195 ~~~~----~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++.. +++++++||++|+|+++++..|...+..
T Consensus 132 l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 132 LNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 6554 4789999999999999999988776543
No 182
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.62 E-value=3.4e-15 Score=133.87 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=77.4
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH----hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ----DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~----~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
..+.||||+|+++|.......++++|++++|+|++++ .+++.+. .+.. .
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~----~~~~-----------------------~ 135 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA----ALEI-----------------------M 135 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH----HHHH-----------------------c
Confidence 5789999999998877777777889999999999873 2333222 2222 1
Q ss_pred CCCeEEEEEeCCCCCCCCc-ccCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 166 PNIVIALAGNKADLPTSRR-CVEYSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 166 ~~~piilVgnK~Dl~~~~~-~v~~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
...|++||+||+|+..... ....++..++++.. +.+++++||++|.|++++|+.|.+.+.
T Consensus 136 ~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 136 GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 2247899999999965311 11123344444432 578999999999999999999988765
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.62 E-value=1e-14 Score=124.67 Aligned_cols=151 Identities=16% Similarity=0.049 Sum_probs=97.6
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cchhhccC
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LAPMYYRN 113 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~~~~~~~ 113 (373)
..+++++|. |||||++++.+.++... .................+.+.+|||+|...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 357888887 99999999998865433 111111111112233346788999999754332 23445789
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
+|++++|+|++++.+.. ...++..+.. .+.|+++|+||+|+... .....+....
T Consensus 83 ~d~i~~v~d~~~~~~~~-~~~~~~~~~~------------------------~~~~~iiv~nK~Dl~~~-~~~~~~~~~~ 136 (168)
T cd04163 83 VDLVLFVVDASEPIGEG-DEFILELLKK------------------------SKTPVILVLNKIDLVKD-KEDLLPLLEK 136 (168)
T ss_pred CCEEEEEEECCCccCch-HHHHHHHHHH------------------------hCCCEEEEEEchhcccc-HHHHHHHHHH
Confidence 99999999999872211 1223333333 25799999999998742 1122222333
Q ss_pred HHHHcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 194 YAEENG-LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 194 ~~~~~~-~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
+....+ .+++++|++++.|++++++.|.+.
T Consensus 137 ~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 137 LKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 444443 689999999999999999998765
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.61 E-value=8.5e-15 Score=150.49 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=101.8
Q ss_pred ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc------chhhc--cCCcEEEEEEECC
Q psy18160 56 RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL------APMYY--RNAQAAIIVYDIT 124 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l------~~~~~--~~ad~iilv~D~~ 124 (373)
|||||+|++++..+... +.+.+.....+.+++. .+++|||+|++++... .+.++ +++|++++|+|.+
T Consensus 6 GKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat 83 (591)
T TIGR00437 6 GKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDAS 83 (591)
T ss_pred CHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCC
Confidence 99999999998876443 3344555556666664 4789999999887654 34444 3799999999998
Q ss_pred CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160 125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME 204 (373)
Q Consensus 125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e 204 (373)
+.+. ...+..++.+ .++|+++|+||+|+.+. +.+. .+.+++.+.+++++++
T Consensus 84 ~ler---~l~l~~ql~~------------------------~~~PiIIVlNK~Dl~~~-~~i~-~d~~~L~~~lg~pvv~ 134 (591)
T TIGR00437 84 NLER---NLYLTLQLLE------------------------LGIPMILALNLVDEAEK-KGIR-IDEEKLEERLGVPVVP 134 (591)
T ss_pred cchh---hHHHHHHHHh------------------------cCCCEEEEEehhHHHHh-CCCh-hhHHHHHHHcCCCEEE
Confidence 7432 2223233322 36899999999998653 3333 3567888889999999
Q ss_pred EcCCCCCCHHHHHHHHHHHc
Q psy18160 205 TSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 205 vSak~~~gI~~lf~~L~~~i 224 (373)
+||++|+|++++++.+.+..
T Consensus 135 tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 135 TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.60 E-value=1e-14 Score=152.81 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=103.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
....++++|. |||||+++|.+..+... .+..+.....+.+++ ..+.||||+|++.|..++...++.+|++||
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 4467888886 99999999998777654 222222233455555 468899999999999999999999999999
Q ss_pred EEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH----
Q psy18160 120 VYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE---- 192 (373)
Q Consensus 120 v~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~---- 192 (373)
|||+++. .+++.+. .+. ..++|++|++||+|+... ..+...
T Consensus 367 VVdAddGv~~qT~e~i~----~a~------------------------~~~vPiIVviNKiDl~~a----~~e~V~~eL~ 414 (787)
T PRK05306 367 VVAADDGVMPQTIEAIN----HAK------------------------AAGVPIIVAINKIDKPGA----NPDRVKQELS 414 (787)
T ss_pred EEECCCCCCHhHHHHHH----HHH------------------------hcCCcEEEEEECcccccc----CHHHHHHHHH
Confidence 9999873 3433321 121 246899999999999653 112211
Q ss_pred ---HHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 193 ---AYAEENG--LLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 193 ---~~~~~~~--~~~~evSak~~~gI~~lf~~L~~ 222 (373)
.++..++ ++++++||++|.||+++|+.|..
T Consensus 415 ~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 415 EYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 1233333 68999999999999999999875
No 186
>KOG0074|consensus
Probab=99.60 E-value=5.4e-15 Score=120.18 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=118.9
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
...+++.++|- |||||+.++.+......|....|..+.+.+++ .+.+.+||.+|+...+..|..||.+.|++|+|.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 34578888884 99999999998876665444456678888875 578999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-----
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE----- 196 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~----- 196 (373)
|.+|+.-|+++.+-+.++.+- .....+|+++.+||.|+... .+.++...-+.
T Consensus 94 DS~D~krfeE~~~el~ELlee--------------------eKl~~vpvlIfankQdllta---a~~eeia~klnl~~lr 150 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEE--------------------EKLAEVPVLIFANKQDLLTA---AKVEEIALKLNLAGLR 150 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhh--------------------hhhhccceeehhhhhHHHhh---cchHHHHHhcchhhhh
Confidence 999999999887555554431 34468999999999998654 33333222221
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
..-..+-++||.+++|+.+-.+++.+.
T Consensus 151 dRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 151 DRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred hceEEeeeCccccccCccCcchhhhcC
Confidence 112457899999999999988887653
No 187
>PRK00089 era GTPase Era; Reviewed
Probab=99.59 E-value=1.8e-14 Score=136.43 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=100.9
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE-EEEEEEECCEEEEEEEEeCCCccccc--------ccchhhc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF-ITQTVCLDDVTIRFEIWDTAGQERYH--------TLAPMYY 111 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~-~~~~i~~~~~~v~l~i~Dt~G~e~~~--------~l~~~~~ 111 (373)
.+-+++++|. |||||+|++++.++... ....+. ....+... ....+.+|||+|..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 4567888887 99999999999877544 111111 11122222 23678999999975432 1233457
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHH-HHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSW-VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
.++|++++|+|+++..+ ....+ +..+.. .+.|+++|+||+|+... +....+.
T Consensus 83 ~~~D~il~vvd~~~~~~--~~~~~i~~~l~~------------------------~~~pvilVlNKiDl~~~-~~~l~~~ 135 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG--PGDEFILEKLKK------------------------VKTPVILVLNKIDLVKD-KEELLPL 135 (292)
T ss_pred hcCCEEEEEEeCCCCCC--hhHHHHHHHHhh------------------------cCCCEEEEEECCcCCCC-HHHHHHH
Confidence 89999999999988322 22222 222222 36799999999999742 2222333
Q ss_pred HHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 191 GEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 191 ~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..++.+..+ .+++++||+++.|++++++.|.+.+..
T Consensus 136 ~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 136 LEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 444555444 579999999999999999999988764
No 188
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.59 E-value=1.4e-14 Score=123.32 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=96.9
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-cee--eeEEEEEEEECCEEEEEEEEeCCCccccc------ccchhhc--cC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYH------TLAPMYY--RN 113 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~------~l~~~~~--~~ 113 (373)
|+++++|. |||||+|++++.+.... ..| ++.....+.+++ ..+.++|+||.-... .+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 57899997 99999999999985543 222 244455666777 457899999953222 2334444 58
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
.|+++.|.|+++.+. -.....++.+ -++|+++|.||+|+... +.+.. +...
T Consensus 79 ~D~ii~VvDa~~l~r---~l~l~~ql~e------------------------~g~P~vvvlN~~D~a~~-~g~~i-d~~~ 129 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NLYLTLQLLE------------------------LGIPVVVVLNKMDEAER-KGIEI-DAEK 129 (156)
T ss_dssp SSEEEEEEEGGGHHH---HHHHHHHHHH------------------------TTSSEEEEEETHHHHHH-TTEEE--HHH
T ss_pred CCEEEEECCCCCHHH---HHHHHHHHHH------------------------cCCCEEEEEeCHHHHHH-cCCEE-CHHH
Confidence 999999999987542 2233344444 36899999999998653 22322 3567
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160 194 YAEENGLLFMETSAKTAMNVNEIFVEI 220 (373)
Q Consensus 194 ~~~~~~~~~~evSak~~~gI~~lf~~L 220 (373)
+.+.+|+|++++||++++|++++++.|
T Consensus 130 Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 130 LSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 888899999999999999999998865
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.58 E-value=1.7e-14 Score=121.71 Aligned_cols=141 Identities=16% Similarity=0.038 Sum_probs=95.8
Q ss_pred ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc-------hhhccCCcEEEEEEECC
Q psy18160 56 RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA-------PMYYRNAQAAIIVYDIT 124 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~-------~~~~~~ad~iilv~D~~ 124 (373)
|||||++++++..+... +............++ ...+.+|||+|...+.... ..+++.+|++++|+|.+
T Consensus 8 GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~ 86 (163)
T cd00880 8 GKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDAD 86 (163)
T ss_pred CHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCC
Confidence 99999999998765522 111122222333321 4578999999987665433 34788999999999999
Q ss_pred CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH---HHHHHHHHcCCe
Q psy18160 125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS---EGEAYAEENGLL 201 (373)
Q Consensus 125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~---e~~~~~~~~~~~ 201 (373)
+..+..... |...... .+.|+++|+||+|+.... ..... .........+.+
T Consensus 87 ~~~~~~~~~-~~~~~~~------------------------~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~ 140 (163)
T cd00880 87 LRADEEEEK-LLELLRE------------------------RGKPVLLVLNKIDLLPEE-EEEELLELRLLILLLLLGLP 140 (163)
T ss_pred CCCCHHHHH-HHHHHHh------------------------cCCeEEEEEEccccCChh-hHHHHHHHHHhhcccccCCc
Confidence 887766554 3333322 578999999999987541 11111 112223334578
Q ss_pred EEEEcCCCCCCHHHHHHHHHHH
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~ 223 (373)
++++||+++.|+++++++|.+.
T Consensus 141 ~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 141 VIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred eEEEeeeccCCHHHHHHHHHhh
Confidence 9999999999999999998764
No 190
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.58 E-value=4.4e-15 Score=127.34 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=102.7
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR 183 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~ 183 (373)
+.+.++.++++|++++|+|++++....+. .+...+.. .+.|+++|+||+|+.+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~------------------------~~~p~iiv~NK~Dl~~~- 56 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE------------------------LGKKLLIVLNKADLVPK- 56 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh------------------------CCCcEEEEEEhHHhCCH-
Confidence 45677788899999999999876432221 12222221 35799999999998542
Q ss_pred cccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccc
Q psy18160 184 RCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSS 263 (373)
Q Consensus 184 ~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~ 263 (373)
. ..++...+....+.+++.+||+++.|++++++.+.+.+...
T Consensus 57 ~--~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~~------------------------------------ 98 (156)
T cd01859 57 E--VLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAKID------------------------------------ 98 (156)
T ss_pred H--HHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHhhc------------------------------------
Confidence 1 11122233444567899999999999999999998766410
Q ss_pred cceeecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeee
Q psy18160 264 IHILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFS 343 (373)
Q Consensus 264 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~ 343 (373)
....+++++|.+++|||++++++..+ ....+.++.| ....
T Consensus 99 -------------------------------~~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~--------~t~~ 138 (156)
T cd01859 99 -------------------------------GKEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPG--------YTKG 138 (156)
T ss_pred -------------------------------CCCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCC--------eeee
Confidence 01246799999999999999999854 3556778888 3332
Q ss_pred cceeeeCCeEEEEEehhhH
Q psy18160 344 MPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 344 ~~~~~v~~~~~~l~iw~~~ 362 (373)
...+..++ .+.|||++
T Consensus 139 ~~~~~~~~---~~~~~Dtp 154 (156)
T cd01859 139 EQLVKITS---KIYLLDTP 154 (156)
T ss_pred eEEEEcCC---CEEEEECc
Confidence 22223333 58899975
No 191
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=5.2e-14 Score=120.11 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=116.2
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcC--------c-------ceeeeEEEEEEEECCEEEEEEEEeCCCccccc
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYP--------Y-------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH 104 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~--------~-------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~ 104 (373)
......+|++.|. ||||++.+++...... . |+..||. .+.+++ ...+.++|||||+||.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDE-DTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcC-cceEEEecCCCcHHHH
Confidence 3445578888887 9999999999876311 1 4555554 333443 2458899999999999
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR 184 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~ 184 (373)
.+|..+.+++.++|+++|.+.+..+ +....++.+.. ...+|++|..||.||.+.
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-----------------------~~~ip~vVa~NK~DL~~a-- 136 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-----------------------RNPIPVVVAINKQDLFDA-- 136 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-----------------------ccCCCEEEEeeccccCCC--
Confidence 9999999999999999999999988 44555554443 112999999999999875
Q ss_pred ccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 185 CVEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 185 ~v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.+.+++.++.+.. ..+.++++|.++++..+.++.+...
T Consensus 137 -~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 137 -LPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred -CCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 5677776666554 7899999999999999998888765
No 192
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=2.9e-14 Score=142.13 Aligned_cols=164 Identities=17% Similarity=0.100 Sum_probs=104.7
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccch---hhcc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLAP---MYYR 112 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~~---~~~~ 112 (373)
..++++|- |||||+|++++.+.... |+... .-.+.+++ ..+.+|||||..+ ...+.. .++.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~--lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPN--LGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccce--EEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 35677775 99999999998765432 33322 23445554 4689999999632 112222 2456
Q ss_pred CCcEEEEEEECCC----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 113 NAQAAIIVYDITN----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 113 ~ad~iilv~D~~~----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
.+|++|+|+|+++ ++.++++..|..++..+.... . .........+.|++||+||+|+.+. +.+ .
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l-~---------~~~~~~~l~~kP~IVVlNKiDL~da-~el-~ 303 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPAL-D---------GDLGLGDLAERPRLVVLNKIDVPDA-REL-A 303 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcc-c---------ccchhhhhcCCCEEEEEECccchhh-HHH-H
Confidence 7999999999985 345566666666665421100 0 0000001246899999999999653 211 1
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+.........+++++++||+++.|+++++.+|.+.+...
T Consensus 304 e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 304 EFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 222333445578999999999999999999999887654
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.57 E-value=3.4e-14 Score=149.65 Aligned_cols=151 Identities=17% Similarity=0.078 Sum_probs=105.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----------ccccc-
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----------YHTLA- 107 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----------~~~l~- 107 (373)
..++++++|. |||||+|++++.++... ..+.+.....+.+++.. +.+|||+|..+ |..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4578999997 99999999999875322 22334445566677765 55999999632 22222
Q ss_pred hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160 108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187 (373)
Q Consensus 108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~ 187 (373)
..+++.+|++++|+|+++..+++++. ++..+.. .+.|++||+||+|+.+.. .
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~------------------------~~~piIiV~NK~DL~~~~---~ 578 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD------------------------AGRALVLVFNKWDLMDEF---R 578 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEEchhcCChh---H
Confidence 23478999999999999988887764 3344433 468999999999996531 1
Q ss_pred HHHHHHHH-HHc----CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 188 YSEGEAYA-EEN----GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 188 ~~e~~~~~-~~~----~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+...+.. ..+ ..+++++||++|.|++++|+.+.+.+.+
T Consensus 579 ~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 579 RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 12222211 111 2467899999999999999999887764
No 194
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.57 E-value=3.3e-14 Score=127.49 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=86.3
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCC-cEEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNA-QAAIIVYD 122 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a-d~iilv~D 122 (373)
.++++|. |||||+++|..+.+... ++............+..+.+.+||+||+++++..+..+++++ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 4678887 99999999999988766 333232221221123456799999999999998888999999 99999999
Q ss_pred CCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 123 ITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 123 ~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
.++. .++..+.+|+..+.... ....+.+|++||+||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~------------------~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDL------------------EKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHH------------------hhccCCCCEEEEecchhhccc
Confidence 9998 68888777766554310 012357999999999998653
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.56 E-value=4.1e-14 Score=144.60 Aligned_cols=148 Identities=18% Similarity=0.084 Sum_probs=99.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEEEE------------ECCEEEEEEEEeCCCcccccc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQTVC------------LDDVTIRFEIWDTAGQERYHT 105 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~i~------------~~~~~v~l~i~Dt~G~e~~~~ 105 (373)
..++++|. |||||+++|.+..+... ++|..+...... ++.....+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 46788887 99999999998877543 444443222110 001112388999999999999
Q ss_pred cchhhccCCcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 106 LAPMYYRNAQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 106 l~~~~~~~ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
++..+++.+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+...
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~------------------------~~vpiIVv~NK~Dl~~~ 136 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM------------------------YKTPFVVAANKIDRIPG 136 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH------------------------cCCCEEEEEECCCccch
Confidence 99999999999999999987 45554443 1222 36799999999998642
Q ss_pred Ccc---cC--------HHH------------HHHHHH------------Hc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 183 RRC---VE--------YSE------------GEAYAE------------EN--GLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 183 ~~~---v~--------~~e------------~~~~~~------------~~--~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
... .+ .+. ..++++ .+ ..+++++||++|+|++++..+|...
T Consensus 137 ~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 137 WRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 100 00 000 001111 11 2589999999999999999887643
No 196
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=4.7e-14 Score=140.90 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=101.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE--EEEEEEECCEEEEEEEEeCCCccccccc-----------c
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF--ITQTVCLDDVTIRFEIWDTAGQERYHTL-----------A 107 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~--~~~~i~~~~~~v~l~i~Dt~G~e~~~~l-----------~ 107 (373)
..++++++|. |||||+|++++...... ..|.+. ....+..++. .+.+|||+|..+...+ .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 5689999997 99999999998764322 223222 2233444554 4679999996433221 1
Q ss_pred hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160 108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187 (373)
Q Consensus 108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~ 187 (373)
..+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+. . .
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~------------------------~~~~~ivv~NK~Dl~~~-~--~ 301 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE------------------------AGRALVIVVNKWDLVDE-K--T 301 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH------------------------cCCcEEEEEECccCCCH-H--H
Confidence 23678999999999999887766543 3333333 36799999999998643 1 1
Q ss_pred HHHHH-HHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 188 YSEGE-AYAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 188 ~~e~~-~~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.++.. ++... ...+++++||+++.|++++|+.+.+....
T Consensus 302 ~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 302 MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11211 12222 24689999999999999999998876543
No 197
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.55 E-value=1e-14 Score=129.06 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=103.7
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCc--C-------------c--------ceeeeEEEEEEEECCEEEEEEEEeCCC
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFY--P-------------Y--------LFSAAFITQTVCLDDVTIRFEIWDTAG 99 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~--~-------------~--------Tig~~~~~~~i~~~~~~v~l~i~Dt~G 99 (373)
+.+.++++|. |||||+.+++...-. . . |+.... ..+..+.....+.++||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~--~~~~~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSF--ISFEKNENNRKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEE--EEEEBTESSEEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccc--ccccccccccceeeccccc
Confidence 4567888887 999999999854311 0 0 343332 2333123456789999999
Q ss_pred cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
+..|.......++.+|++|+|+|+.+..... ..+.+..+.. .++|+++|.||+|+
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~------------------------~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE------------------------LGIPIIVVLNKMDL 134 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH------------------------TT-SEEEEEETCTS
T ss_pred ccceeecccceecccccceeeeecccccccc-cccccccccc------------------------cccceEEeeeeccc
Confidence 9998887778899999999999998754332 2233344444 46789999999998
Q ss_pred CCCCcccCHHHHH-HHHHHcC------CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 180 PTSRRCVEYSEGE-AYAEENG------LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 180 ~~~~~~v~~~e~~-~~~~~~~------~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
...+.....++.. .+.+..+ ++++++||++|.|+++|++.|.+.++
T Consensus 135 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 135 IEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 7321111122222 3434432 47999999999999999999988764
No 198
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.55 E-value=9.4e-14 Score=146.15 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=110.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc----------chhhc-
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL----------APMYY- 111 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l----------~~~~~- 111 (373)
.++++++|. |||||+|++++.+.... ..|.+...+...++.....+.+|||||...+... ...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 357888887 99999999998766443 5666665555555555667899999998776532 22343
Q ss_pred -cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 112 -RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 112 -~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
..+|++++|+|.++.+.- ..|..++.+ .++|+++|+||+|+.+. +.+ ..+
T Consensus 83 ~~~aD~vI~VvDat~ler~---l~l~~ql~e------------------------~giPvIvVlNK~Dl~~~-~~i-~id 133 (772)
T PRK09554 83 SGDADLLINVVDASNLERN---LYLTLQLLE------------------------LGIPCIVALNMLDIAEK-QNI-RID 133 (772)
T ss_pred ccCCCEEEEEecCCcchhh---HHHHHHHHH------------------------cCCCEEEEEEchhhhhc-cCc-HHH
Confidence 479999999999885532 234444444 36899999999998653 333 345
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.+++.+.+|++++++||++++|++++.+.+.+..
T Consensus 134 ~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 134 IDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 6778888999999999999999999999887654
No 199
>PRK10218 GTP-binding protein; Provisional
Probab=99.54 E-value=1.2e-13 Score=141.75 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=112.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhh--CcCcC--------------c-ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVIN--VVFYP--------------Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~--~~~~~--------------~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l 106 (373)
..+++++|. |||||+++|+. +.|.. . +.|.++..+...++.+.+.+.+|||+|+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 456777776 99999999996 33321 1 5677777777777667789999999999999999
Q ss_pred chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
+..+++.+|++++|+|+++....+ ...++..+.. .++|.+++.||+|+.......
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~------------------------~gip~IVviNKiD~~~a~~~~ 139 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA------------------------YGLKPIVVINKVDRPGARPDW 139 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH------------------------cCCCEEEEEECcCCCCCchhH
Confidence 999999999999999998753222 2223333333 367889999999987542222
Q ss_pred CHHHHHHHHHH-------cCCeEEEEcCCCCC----------CHHHHHHHHHHHcc
Q psy18160 187 EYSEGEAYAEE-------NGLLFMETSAKTAM----------NVNEIFVEIAKKLP 225 (373)
Q Consensus 187 ~~~e~~~~~~~-------~~~~~~evSak~~~----------gI~~lf~~L~~~i~ 225 (373)
..++...+... ..++++.+||++|. ++..+++.++..+.
T Consensus 140 vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 140 VVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred HHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 23344444322 34679999999998 58889988888775
No 200
>KOG0072|consensus
Probab=99.54 E-value=1.8e-14 Score=117.52 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=112.8
Q ss_pred cEEEEEEc--C-ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLK--D-RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG--~-GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.+++.++| | |||+++.|+.-++.... |+|... ..+.+ +...+++||.+|+-..+..|+.||.+.|++|+|+
T Consensus 18 e~rililgldGaGkttIlyrlqvgevvttkPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 35566665 4 99999999988877766 777543 34444 5678999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----HH
Q psy18160 122 DITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----YA 195 (373)
Q Consensus 122 D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----~~ 195 (373)
|.+|+....-.. +++..+.+ .......++|++||.|.... ....|+.. -.
T Consensus 94 Dssd~dris~a~~el~~mL~E---------------------~eLq~a~llv~anKqD~~~~---~t~~E~~~~L~l~~L 149 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQE---------------------EELQHAKLLVFANKQDYSGA---LTRSEVLKMLGLQKL 149 (182)
T ss_pred eccchhhhhhhHHHHHHHhcc---------------------HhhcCceEEEEeccccchhh---hhHHHHHHHhChHHH
Confidence 999987655444 23333333 23356889999999998653 23333221 12
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++.-+.+|++||.+|+|++++++||.+.+..
T Consensus 150 k~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 150 KDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 2233679999999999999999999987754
No 201
>KOG0084|consensus
Probab=99.54 E-value=3e-15 Score=128.74 Aligned_cols=62 Identities=31% Similarity=0.463 Sum_probs=59.5
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..++.||++++|++|||||||+.||..+.|.+.|.+||| +||.++++.++|+.|+|||||+|
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIG--------VDf~~rt~e~~gk~iKlQIWDTA 66 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIG--------VDFKIRTVELDGKTIKLQIWDTA 66 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceee--------eEEEEEEeeecceEEEEEeeecc
Confidence 456789999999999999999999999999999999999 99999999999999999999998
No 202
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.54 E-value=1.8e-13 Score=125.17 Aligned_cols=164 Identities=14% Similarity=0.040 Sum_probs=101.7
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccccc----c---cchhhccC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH----T---LAPMYYRN 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~----~---l~~~~~~~ 113 (373)
+++++|. |||||++++++...... |.. .....+.+++ ..+++|||+|+.+.. . ....++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~--~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLT--CVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcccc--ceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 5778887 99999999998753222 322 2234555655 568999999985433 1 22346889
Q ss_pred CcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCC-------cc----------------cccc---------------
Q psy18160 114 AQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNID-------TF----------------GRAK--------------- 154 (373)
Q Consensus 114 ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~-------~~----------------~~~~--------------- 154 (373)
+|++++|+|+++++ ..+.+.+.+...--......+ .. ....
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999998865 444444443321110000000 00 0000
Q ss_pred -------hhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 155 -------SWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 155 -------~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.+.+-+. .....+|+++|+||+|+.. .+++..+++. .+++++||+++.|++++|+.|.+.+-
T Consensus 158 ~~~~~~~~~~~~~~-~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 158 REDITVDDLIDVIE-GNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred ccCCCHHHHHHHHh-CCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0111111 1123479999999999853 3555566553 45899999999999999999988653
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.53 E-value=6.2e-14 Score=143.85 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=109.3
Q ss_pred EEEEEcC---ChhHHHHHhhh--CcCcCc---------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccch
Q psy18160 49 AQIWLKD---RVDCMTQIVIN--VVFYPY---------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAP 108 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~--~~~~~~---------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~ 108 (373)
.++++|. |||||+.+++. +.+... ..|.++..+...+..+.+.+.||||||+++|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 4667775 99999999986 222111 345555555555544567899999999999998889
Q ss_pred hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
.+++.+|++++|+|+++.. ......|+..+.. .++|+++|+||+|+.......-.
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~------------------------~~ip~IVviNKiD~~~a~~~~v~ 137 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE------------------------LGLKPIVVINKIDRPSARPDEVV 137 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH------------------------CCCCEEEEEECCCCCCcCHHHHH
Confidence 9999999999999998642 3334456555544 46789999999998654111112
Q ss_pred HHHHHHHH-------HcCCeEEEEcCCCCC----------CHHHHHHHHHHHcch
Q psy18160 189 SEGEAYAE-------ENGLLFMETSAKTAM----------NVNEIFVEIAKKLPK 226 (373)
Q Consensus 189 ~e~~~~~~-------~~~~~~~evSak~~~----------gI~~lf~~L~~~i~~ 226 (373)
++...+.. ...++++.+||++|. |++.+|+.++..+..
T Consensus 138 ~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 138 DEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 34444442 235789999999995 799999999988863
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.53 E-value=5.9e-14 Score=139.67 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=98.3
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhC--cCc-------------------------C----c---ceeeeEEEEEEEEC
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINV--VFY-------------------------P----Y---LFSAAFITQTVCLD 86 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~--~~~-------------------------~----~---Tig~~~~~~~i~~~ 86 (373)
+...+.++++|. |||||+.+|+.. .+. + . .+..+..... +.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ec
Confidence 345688999997 999999999852 111 0 0 2223333333 34
Q ss_pred CEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHH--HHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160 87 DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK--SWVKELQRMAPPNIDTFGRAKSWVKELQRMA 164 (373)
Q Consensus 87 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
...+.+.||||+|+++|.......++.+|++++|+|+++.+++.... +++..+..
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~----------------------- 138 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART----------------------- 138 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-----------------------
Confidence 44568899999999988665556678999999999999875432111 11111111
Q ss_pred CCCCeEEEEEeCCCCCCCCc---ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q psy18160 165 PPNIVIALAGNKADLPTSRR---CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNEIF 217 (373)
Q Consensus 165 ~~~~piilVgnK~Dl~~~~~---~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~lf 217 (373)
....|++||+||+|+.+... ....+++.++++..+ ++++++||++|.||++++
T Consensus 139 ~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 139 LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12358999999999964211 122345666777665 579999999999998744
No 205
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.52 E-value=1.6e-13 Score=135.56 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=100.6
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCc---Cc-----ceeeeEEEEEEE----------------EC--C----E
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFY---PY-----LFSAAFITQTVC----------------LD--D----V 88 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~---~~-----Tig~~~~~~~i~----------------~~--~----~ 88 (373)
......+.++++|. |||||+.++.+.... .. |+...+..-.+. ++ + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 34455689999997 999999999653111 11 444332111110 11 1 1
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH----hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ----DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMA 164 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~----~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
...+.||||||+++|..........+|++++|+|++++ .+.+.+. .+..
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~----------------------- 136 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI----------------------- 136 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH-----------------------
Confidence 35789999999988765444445567999999999864 2333222 2222
Q ss_pred CCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 165 PPNIVIALAGNKADLPTSRRC-VEYSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 165 ~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
....|+++|+||+|+.+.... ...+++.++++.. +.+++++||+++.|++++++.|...+..
T Consensus 137 ~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 137 IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred cCCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 112368999999999753111 1123444554432 4789999999999999999999887653
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.51 E-value=1.3e-13 Score=137.21 Aligned_cols=151 Identities=13% Similarity=-0.008 Sum_probs=96.9
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCc---------------------------C----c-ceeeeEEEEEEEECCE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFY---------------------------P----Y-LFSAAFITQTVCLDDV 88 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~---------------------------~----~-Tig~~~~~~~i~~~~~ 88 (373)
.+..+.++++|. |||||+++++...-. + . ..|.+.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 445688999997 999999999832110 0 0 2233332333344445
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN 167 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (373)
.+.+.+|||||+++|.......++.+|++++|+|++++.++... .+++..+.. ...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-----------------------~~~ 139 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-----------------------LGI 139 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-----------------------cCC
Confidence 57899999999988865444557899999999999873222111 122222222 122
Q ss_pred CeEEEEEeCCCCCCCCc---ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q psy18160 168 IVIALAGNKADLPTSRR---CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNEIF 217 (373)
Q Consensus 168 ~piilVgnK~Dl~~~~~---~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~lf 217 (373)
.|+++++||+|+..... ....+++.++++..+ .+++++||++|.|+++++
T Consensus 140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 47999999999965211 112345556666655 469999999999998744
No 207
>PRK12289 GTPase RsgA; Reviewed
Probab=99.51 E-value=5.5e-14 Score=135.37 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=71.9
Q ss_pred ccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 101 ERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 101 e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
++-..+.+..++++|.+++|+|+.++. ++..+.+|+..+.. .++|++||+||+||
T Consensus 77 pR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------------------------~~ip~ILVlNK~DL 132 (352)
T PRK12289 77 PRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES------------------------TGLEIVLCLNKADL 132 (352)
T ss_pred ccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------CCCCEEEEEEchhc
Confidence 344556677799999999999998876 56677888876644 57899999999999
Q ss_pred CCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160 180 PTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 180 ~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~ 221 (373)
.+. . ..+...+.++..+++++.+||+++.|++++++.|.
T Consensus 133 v~~-~--~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~ 171 (352)
T PRK12289 133 VSP-T--EQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLR 171 (352)
T ss_pred CCh-H--HHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhc
Confidence 643 1 12233344456789999999999999999988773
No 208
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=3.1e-13 Score=132.26 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=104.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc----cch---hhccC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT----LAP---MYYRN 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~----l~~---~~~~~ 113 (373)
.++++|- |||||+|++++.+.... |....+. .+.+++ ...+.++||||..+-.. +.. ..++.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 4667775 99999999998764322 4433332 333332 23578999999753211 222 24778
Q ss_pred CcEEEEEEECC---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 114 AQAAIIVYDIT---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 114 ad~iilv~D~~---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
+|++++|+|++ +.+.++....|+.++..+. ....+.|++||+||+|+... ..+ .+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~-------------------~~L~~kP~IlVlNKiDl~~~-~el-~~~ 296 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYS-------------------PKLAEKPRWLVFNKIDLLDE-EEA-EER 296 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhh-------------------hhhcCCCEEEEEeCCccCCh-HHH-HHH
Confidence 99999999998 4567777777777776521 01136799999999998653 111 233
Q ss_pred HHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 191 GEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 191 ~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..++.+..+ .+++.+||+++.||+++++.|.+.+..
T Consensus 297 l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 297 AKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 444555544 368999999999999999999988764
No 209
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.51 E-value=2.1e-13 Score=116.81 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=93.6
Q ss_pred EEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcc----------cccccchhhcc-
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQE----------RYHTLAPMYYR- 112 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----------~~~~l~~~~~~- 112 (373)
++++|. |||||++.+++..+... +.+.+.....+..++ .+.+|||+|.. .+..+...|+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 678887 99999999996555443 555554444444444 78899999943 34444455554
Q ss_pred --CCcEEEEEEECCCHhhH--HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-ccC
Q psy18160 113 --NAQAAIIVYDITNQDTF--GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CVE 187 (373)
Q Consensus 113 --~ad~iilv~D~~~~~Sf--~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v~ 187 (373)
..+++++++|..+..+. ..+.+|+. . ...|+++|+||+|+..... ...
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~------------------------~~~~vi~v~nK~D~~~~~~~~~~ 131 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLE---E------------------------LGIPFLVVLTKADKLKKSELAKA 131 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHH---H------------------------cCCCEEEEEEchhcCChHHHHHH
Confidence 45789999999865322 22333332 2 2468999999999854311 111
Q ss_pred HHHHHHHHH--HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 188 YSEGEAYAE--ENGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 188 ~~e~~~~~~--~~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
........+ ....+++++||+++.+++++++.|.+.
T Consensus 132 ~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 132 LKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 122222222 234579999999999999999998764
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.50 E-value=1.6e-13 Score=135.63 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=102.0
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcC---c-----ceeeeEEEEE----------------EEECC------EEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYP---Y-----LFSAAFITQT----------------VCLDD------VTIRF 92 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~---~-----Tig~~~~~~~----------------i~~~~------~~v~l 92 (373)
..+.++++|. |||||++++.+..... . |+...|..-. ...++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3578899997 9999999997642221 1 4443322110 00011 14678
Q ss_pred EEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEE
Q psy18160 93 EIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIAL 172 (373)
Q Consensus 93 ~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piil 172 (373)
.+|||||+++|...+...+..+|++++|+|+++........+.+..+.. ....|+++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-----------------------~gi~~iIV 139 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-----------------------IGIKNIVI 139 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-----------------------cCCCeEEE
Confidence 9999999999987777777889999999999864311111222222222 12246899
Q ss_pred EEeCCCCCCCCc-ccCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 173 AGNKADLPTSRR-CVEYSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 173 VgnK~Dl~~~~~-~v~~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
|+||+|+.+... ....+++.++.+.. +++++++||++|.|++++++.|...+.
T Consensus 140 vvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 140 VQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred EEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 999999975311 11233444444443 578999999999999999999988665
No 211
>COG2262 HflX GTPases [General function prediction only]
Probab=99.50 E-value=3.2e-13 Score=128.80 Aligned_cols=191 Identities=19% Similarity=0.149 Sum_probs=130.0
Q ss_pred Cccccchhhhhh---hhhhhhhhhhhccCCCCcccc-cc-CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----
Q psy18160 6 GTCGSTLQTIEY---ALTVRVLKLKTQIPKGNWFSM-MS-GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY----- 72 (373)
Q Consensus 6 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----- 72 (373)
|+.|+++..+|. .++.|+..++.++........ .. .+.......+.++|- |||||+|++++......
T Consensus 146 G~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFA 225 (411)
T COG2262 146 GFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFA 225 (411)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccc
Confidence 788899998887 677788888888765443332 22 233445555666664 99999999998765533
Q ss_pred ceeeeEEEEEEEECCEEEEEEEEeCCCccccc--ccchhh------ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCC
Q psy18160 73 LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH--TLAPMY------YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144 (373)
Q Consensus 73 Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~--~l~~~~------~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~ 144 (373)
|... ..+.+.+.+ ...+.+-||.|--+.- .+...| ...||.++.|+|++++...+.+..-.+.+.+
T Consensus 226 TLdp--ttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e--- 299 (411)
T COG2262 226 TLDP--TTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAE--- 299 (411)
T ss_pred cccC--ceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHH---
Confidence 5543 356677764 2346678999953221 122222 4589999999999999776666655555555
Q ss_pred CCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
....++|+|+|.||.|+.... +....+....-..+.+||++|.|++.|.+.|...+
T Consensus 300 ------------------l~~~~~p~i~v~NKiD~~~~~------~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 300 ------------------IGADEIPIILVLNKIDLLEDE------EILAELERGSPNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred ------------------cCCCCCCEEEEEecccccCch------hhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHh
Confidence 455679999999999976541 11122222211588999999999999999999888
Q ss_pred ch
Q psy18160 225 PK 226 (373)
Q Consensus 225 ~~ 226 (373)
..
T Consensus 356 ~~ 357 (411)
T COG2262 356 SG 357 (411)
T ss_pred hh
Confidence 63
No 212
>PRK12288 GTPase RsgA; Reviewed
Probab=99.49 E-value=6.5e-14 Score=134.85 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=69.0
Q ss_pred ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
..++|.+++|++++...++..+.+|+..+.. .++|++||+||+||.+........+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~------------------------~~i~~VIVlNK~DL~~~~~~~~~~~ 173 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET------------------------LGIEPLIVLNKIDLLDDEGRAFVNE 173 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh------------------------cCCCEEEEEECccCCCcHHHHHHHH
Confidence 4679999999999888899999999876544 4689999999999965311112233
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
..+.++..+++++++||+++.|++++++.|..
T Consensus 174 ~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 174 QLDIYRNIGYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhh
Confidence 34445667899999999999999999988753
No 213
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.47 E-value=2.8e-13 Score=121.88 Aligned_cols=104 Identities=24% Similarity=0.149 Sum_probs=68.6
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
...+.+|||||+++|.......++.+|++++|+|+++...-. ..+....+.. ....
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~-----------------------~~~~ 131 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL-----------------------LGIR 131 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH-----------------------cCCC
Confidence 346789999999888665666788999999999998753211 1111122222 1124
Q ss_pred eEEEEEeCCCCCCCCcc---cCHHHHHHHHHHcCC---eEEEEcCCCCCCHHHH
Q psy18160 169 VIALAGNKADLPTSRRC---VEYSEGEAYAEENGL---LFMETSAKTAMNVNEI 216 (373)
Q Consensus 169 piilVgnK~Dl~~~~~~---v~~~e~~~~~~~~~~---~~~evSak~~~gI~~l 216 (373)
++++|+||+|+....+. ...++..++++.+++ +++++||+++.|+++.
T Consensus 132 ~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 132 HVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 57889999998643111 112344556666664 5899999999998853
No 214
>KOG0094|consensus
Probab=99.47 E-value=1.5e-14 Score=124.02 Aligned_cols=59 Identities=36% Similarity=0.531 Sum_probs=57.1
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|+.+||||+|+.||+.+.|...|.+||| +||.++++.+.|++++|||||.|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIG--------iDFlskt~~l~d~~vrLQlWDTA 79 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIG--------IDFLSKTMYLEDRTVRLQLWDTA 79 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceee--------eEEEEEEEEEcCcEEEEEEEecc
Confidence 358999999999999999999999999999999999 99999999999999999999998
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.45 E-value=1.4e-12 Score=119.53 Aligned_cols=107 Identities=13% Similarity=0.064 Sum_probs=75.7
Q ss_pred EEEEcC---ChhHHHHHhhhCcCc--------------C---c--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFY--------------P---Y--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA 107 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~--------------~---~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~ 107 (373)
++++|. |||||+++++...-. + . ..|..+......+..+...+.+|||+|+.+|...+
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 81 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEV 81 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHH
Confidence 567775 999999999863110 0 0 22333333334444455778999999999998888
Q ss_pred hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
..+++.+|++++|+|.++.... ....++..+.. .++|+++++||+|+..
T Consensus 82 ~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~------------------------~~~P~iivvNK~D~~~ 130 (237)
T cd04168 82 ERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK------------------------LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH------------------------cCCCEEEEEECccccC
Confidence 8999999999999999886543 23344444443 3679999999999864
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.45 E-value=7.9e-13 Score=135.65 Aligned_cols=147 Identities=19% Similarity=0.142 Sum_probs=96.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEEEEE--CCEEE----------EEEEEeCCCcccccc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQTVCL--DDVTI----------RFEIWDTAGQERYHT 105 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~i~~--~~~~v----------~l~i~Dt~G~e~~~~ 105 (373)
..++++|. |||||++++.+..+... ++|.++....... .+..+ .+.+|||||++.|..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN 86 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence 46788886 99999999987654332 4444432211100 11111 168999999999999
Q ss_pred cchhhccCCcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 106 LAPMYYRNAQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 106 l~~~~~~~ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
++...++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~------------------------~~vpiIvviNK~D~~~~ 138 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR------------------------RKTPFVVAANKIDRIPG 138 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH------------------------cCCCEEEEEECcCCchh
Confidence 99888999999999999997 566655431 222 36799999999998521
Q ss_pred Ccc---cC--------HH-----------HHHHHHHHc---------------CCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 183 RRC---VE--------YS-----------EGEAYAEEN---------------GLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 183 ~~~---v~--------~~-----------e~~~~~~~~---------------~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
... .. .. +........ ..+++++||++|+|++++++.+..
T Consensus 139 ~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 139 WKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 00 00 010111111 257999999999999999988764
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.45 E-value=6.9e-13 Score=119.74 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=76.5
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--------------------ceeeeEEEEEEEE-----CCEEEEEEEEeCCCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--------------------LFSAAFITQTVCL-----DDVTIRFEIWDTAGQ 100 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--------------------Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~ 100 (373)
.++++|. |||||+++|+....... ..|.++....+.+ ++..+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 3677776 99999999987543210 2233332222222 356789999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160 101 ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180 (373)
Q Consensus 101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 180 (373)
++|......+++.+|++++|+|+++..++.. .+|+..+.. .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~------------------------~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL------------------------EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH------------------------cCCCEEEEEECcccC
Confidence 9998888889999999999999988766543 334444332 358999999999975
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.43 E-value=1.8e-12 Score=133.69 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=97.2
Q ss_pred EEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 50 QIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
++++|. |||||+++|++. .+.+. |+...| ..+...+ ...+.+|||||+++|.......+.++|+++
T Consensus 3 i~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~--~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 3 IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGY--AYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeee--EEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 556665 999999999963 33332 444333 2232322 234789999999998766666788999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcc-cCHHHHHH
Q psy18160 119 IVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRC-VEYSEGEA 193 (373)
Q Consensus 119 lv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~-v~~~e~~~ 193 (373)
+|+|+++ +.+.+.+. .+.. .++| ++||+||+|+.+..+. ...+++.+
T Consensus 80 LVVda~eg~~~qT~ehl~----il~~------------------------lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~ 131 (614)
T PRK10512 80 LVVACDDGVMAQTREHLA----ILQL------------------------TGNPMLTVALTKADRVDEARIAEVRRQVKA 131 (614)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH------------------------cCCCeEEEEEECCccCCHHHHHHHHHHHHH
Confidence 9999987 33444332 2222 1234 6899999999653111 11234455
Q ss_pred HHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 194 YAEENG---LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 194 ~~~~~~---~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+....+ .+++++||++|.|++++++.|.....
T Consensus 132 ~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 132 VLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 555544 68999999999999999999986544
No 219
>KOG1707|consensus
Probab=99.42 E-value=4.1e-13 Score=132.19 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=115.5
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
.....++||++|+ |||||+-.++.++|.+. ..-.+.......+..+.+-..|.||+..+.-+.....-++.||++.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 3445689999998 99999999999999987 1111111111223345566889999866554444566789999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH-HHHHHH
Q psy18160 119 IVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE-GEAYAE 196 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e-~~~~~~ 196 (373)
++|+++++.+.+.+. .|+..++... ....++|+||||||+|+..... .+.+. ...+..
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~-------------------~~~~~~PVILvGNK~d~~~~~~-~s~e~~~~pim~ 144 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLF-------------------GDYHETPVILVGNKSDNGDNEN-NSDEVNTLPIMI 144 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhccc-------------------CCCccCCEEEEeeccCCccccc-cchhHHHHHHHH
Confidence 999999999999997 7999888721 1235899999999999976522 22222 222222
Q ss_pred HcC-C-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 197 ENG-L-LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 197 ~~~-~-~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++. + ..++|||++-.++.++|...-+.+.
T Consensus 145 ~f~EiEtciecSA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 145 AFAEIETCIECSALTLANVSELFYYAQKAVI 175 (625)
T ss_pred HhHHHHHHHhhhhhhhhhhHhhhhhhhheee
Confidence 222 2 3789999999999999987765543
No 220
>KOG0462|consensus
Probab=99.42 E-value=3.5e-12 Score=124.77 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=110.8
Q ss_pred cEEEEEEcC-ChhHHHHHhhhCcC-----------cCc-----ceeeeEEEEEEE---ECCEEEEEEEEeCCCccccccc
Q psy18160 47 CMAQIWLKD-RVDCMTQIVINVVF-----------YPY-----LFSAAFITQTVC---LDDVTIRFEIWDTAGQERYHTL 106 (373)
Q Consensus 47 ~i~ivvlG~-GKTsLl~rl~~~~~-----------~~~-----Tig~~~~~~~i~---~~~~~v~l~i~Dt~G~e~~~~l 106 (373)
-+-||.-.+ |||||..|++.-.- .+. ..|.+...++.. .+|..+.++++||||+-.|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 355666667 99999999985311 111 233333333322 2477899999999999999998
Q ss_pred chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
....+.-+||+++|+|++...--+.+..++..++. +..+|.|.||+|++.....-
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-------------------------~L~iIpVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-------------------------GLAIIPVLNKIDLPSADPER 196 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-------------------------CCeEEEeeeccCCCCCCHHH
Confidence 88899999999999999987666666655555443 67899999999998752111
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
-..+..++.....-+.+.+|||+|.|++++++++++.++.
T Consensus 197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 1122333333344579999999999999999999998864
No 221
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.41 E-value=5.2e-13 Score=118.34 Aligned_cols=94 Identities=23% Similarity=0.168 Sum_probs=65.8
Q ss_pred ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
+..++..+++++|++++|+|++++.. .|...+.. ...+.|+++|+||+|+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~----------------------~~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRL----------------------FGGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHH----------------------hcCCCcEEEEEEchhcCCC
Confidence 46778889999999999999987541 12222211 1246799999999998653
Q ss_pred CcccCHHHHHHHH-----HHcCC---eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 183 RRCVEYSEGEAYA-----EENGL---LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 183 ~~~v~~~e~~~~~-----~~~~~---~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
....+....+. +..+. +++++||+++.|++++++.|.+.+.
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 77 --DKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred --CCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 23333343343 33343 6899999999999999999987653
No 222
>COG1159 Era GTPase [General function prediction only]
Probab=99.41 E-value=4.4e-12 Score=116.64 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=102.0
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cch
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LAP 108 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~~ 108 (373)
..+-+++++|. |||||+|++++.+.+.. |.. ...+-+... +...+.+.||||..+-.. ...
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR--~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR--NRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh--hheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 45678999998 99999999999998876 221 112233333 356788999999643222 234
Q ss_pred hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
..+.++|+++||.|+++.-.- -.+|+-+..+ ..+.|++++.||.|...... . .
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk-----------------------~~~~pvil~iNKID~~~~~~-~-l 133 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGP--GDEFILEQLK-----------------------KTKTPVILVVNKIDKVKPKT-V-L 133 (298)
T ss_pred HHhccCcEEEEEEeccccCCc--cHHHHHHHHh-----------------------hcCCCeEEEEEccccCCcHH-H-H
Confidence 457899999999999874322 2223222222 13679999999999876411 1 1
Q ss_pred HHHHHHHH-HcC-CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 189 SEGEAYAE-ENG-LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 189 ~e~~~~~~-~~~-~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
....+++. ... ...+++||++|.|++.+.+.+...+.+
T Consensus 134 ~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 134 LKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 22223332 222 368999999999999999999988864
No 223
>PRK00098 GTPase RsgA; Reviewed
Probab=99.40 E-value=3.6e-13 Score=127.66 Aligned_cols=84 Identities=21% Similarity=0.151 Sum_probs=65.4
Q ss_pred ccCCcEEEEEEECCCHhhHHH-HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 111 YRNAQAAIIVYDITNQDTFGR-AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~~Sf~~-i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
++++|++++|+|++++.++.. +.+|+..+.. .++|+++|+||+|+.+. . ...+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~------------------------~~ip~iIVlNK~DL~~~-~-~~~~ 131 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA------------------------NGIKPIIVLNKIDLLDD-L-EEAR 131 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------CCCCEEEEEEhHHcCCC-H-HHHH
Confidence 589999999999988875444 5678776654 47899999999999642 1 2233
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEI 220 (373)
Q Consensus 190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L 220 (373)
+..+.++..+++++++||+++.|++++++.+
T Consensus 132 ~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l 162 (298)
T PRK00098 132 ELLALYRAIGYDVLELSAKEGEGLDELKPLL 162 (298)
T ss_pred HHHHHHHHCCCeEEEEeCCCCccHHHHHhhc
Confidence 4455666778999999999999999998765
No 224
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=1.3e-11 Score=119.06 Aligned_cols=151 Identities=18% Similarity=0.198 Sum_probs=112.5
Q ss_pred cEEEEEEcC-ChhHHHHHhhhCcC-----------cCc---------ceeeeEEEEEEEE-CCEEEEEEEEeCCCccccc
Q psy18160 47 CMAQIWLKD-RVDCMTQIVINVVF-----------YPY---------LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYH 104 (373)
Q Consensus 47 ~i~ivvlG~-GKTsLl~rl~~~~~-----------~~~---------Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~ 104 (373)
-+-|+.-.+ |||||..|++...- .+. |+-..-..-.+.. +|+.+.++++||||+-.|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 345667777 99999999986421 111 3333322222332 6689999999999999998
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR 184 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~ 184 (373)
-.....+..|.|+++|+|++..-.-+.+...+..+.. +..++-|.||.||+..
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-------------------------~LeIiPViNKIDLP~A-- 143 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-------------------------NLEIIPVLNKIDLPAA-- 143 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-------------------------CcEEEEeeecccCCCC--
Confidence 8888889999999999999987666666666666554 6788999999999764
Q ss_pred ccCHHH-HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 185 CVEYSE-GEAYAEENGLL---FMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 185 ~v~~~e-~~~~~~~~~~~---~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+++. .++...-.|++ .+.+|||+|.||+++++.|+..++.
T Consensus 144 --dpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 144 --DPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred --CHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 3333 34455556764 7899999999999999999998874
No 225
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.39 E-value=5.8e-13 Score=125.60 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=68.4
Q ss_pred hhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160 109 MYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~ 187 (373)
..++++|.+++|+|++++. ++..+.+|+..+.. .++|+++|+||+||.+. ..
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~------------------------~~ip~iIVlNK~DL~~~---~~ 126 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA------------------------AGIEPVIVLTKADLLDD---EE 126 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH------------------------cCCCEEEEEEHHHCCCh---HH
Confidence 3488999999999999988 88999999887765 46899999999999653 11
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160 188 YSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 188 ~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~ 221 (373)
......++...+++++++||+++.|+++++..|.
T Consensus 127 ~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 127 EELELVEALALGYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhc
Confidence 1223344556789999999999999999987663
No 226
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.37 E-value=9.4e-12 Score=120.52 Aligned_cols=153 Identities=15% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeE--EEEEEEECCEEEEEEEEeCCCcc----------cccccc
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAF--ITQTVCLDDVTIRFEIWDTAGQE----------RYHTLA 107 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~--~~~~i~~~~~~v~l~i~Dt~G~e----------~~~~l~ 107 (373)
.+.++++++|. |||||+|++++.+-... ..|.+. -...++.+++. +.++||+|.- .|....
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehh
Confidence 36799999997 99999999999976665 333333 33455556665 5688999953 332221
Q ss_pred -hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 108 -PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 108 -~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
...+..+|.+++|.|.+.+-+-++.. ....+.+ .+.+++||.||+|+.+. +..
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~------------------------~g~~~vIvvNKWDl~~~-~~~ 307 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE------------------------AGRGIVIVVNKWDLVEE-DEA 307 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH------------------------cCCCeEEEEEccccCCc-hhh
Confidence 23467899999999999877655443 3344444 46789999999998764 334
Q ss_pred CHHHHHHHHHH----c-CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 187 EYSEGEAYAEE----N-GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 187 ~~~e~~~~~~~----~-~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
..++.++..+. . ..+.+.+||+++.+++++|+.+.....
T Consensus 308 ~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 308 TMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred HHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 44444332222 2 257899999999999999999876554
No 227
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.36 E-value=1.4e-11 Score=109.55 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=92.2
Q ss_pred cEEEEEEcC---ChhHHHHHhhhC-------c---Cc-----Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINV-------V---FY-----PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~-------~---~~-----~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l 106 (373)
.+.++++|. |||||+++++.. . +. +. ..|.+.....+.+..+...+.+.||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 367889997 999999999853 0 00 00 2333333334444444567889999999888766
Q ss_pred chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcc
Q psy18160 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRC 185 (373)
Q Consensus 107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~ 185 (373)
....++.+|++++|+|+.....-. ..+.+..+.. .++| ++++.||+|+......
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~------------------------~~~~~iIvviNK~D~~~~~~~ 136 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ------------------------VGVPYIVVFLNKADMVDDEEL 136 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH------------------------cCCCcEEEEEeCCCCCCcHHH
Confidence 667788999999999997643211 2223333333 3455 7899999998643111
Q ss_pred --cCHHHHHHHHHHcC-----CeEEEEcCCCCCCH
Q psy18160 186 --VEYSEGEAYAEENG-----LLFMETSAKTAMNV 213 (373)
Q Consensus 186 --v~~~e~~~~~~~~~-----~~~~evSak~~~gI 213 (373)
...+++.++....+ .+++++||++|.|+
T Consensus 137 ~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 137 LELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 11234555555554 57999999999985
No 228
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.36 E-value=2.3e-12 Score=116.89 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=66.3
Q ss_pred EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh---HH---HHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160 88 VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT---FG---RAKSWVKELQRMAPPNIDTFGRAKSWVKELQ 161 (373)
Q Consensus 88 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S---f~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
....+.+|||+|+..|.......++.+|++++|+|+++... |. ...+.+.....
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 134 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-------------------- 134 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH--------------------
Confidence 44678999999998776655566788999999999987421 11 11111111212
Q ss_pred hcCCCCCeEEEEEeCCCCCCCC-cccC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q psy18160 162 RMAPPNIVIALAGNKADLPTSR-RCVE----YSEGEAYAEENG-----LLFMETSAKTAMNVN 214 (373)
Q Consensus 162 ~~~~~~~piilVgnK~Dl~~~~-~~v~----~~e~~~~~~~~~-----~~~~evSak~~~gI~ 214 (373)
....|+++|+||+|+.... .... .+++..+.+..+ ++++++||++|.||+
T Consensus 135 ---~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 135 ---LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ---cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1236899999999997320 0011 122233344443 569999999999987
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.36 E-value=9.8e-12 Score=122.52 Aligned_cols=142 Identities=14% Similarity=0.049 Sum_probs=90.4
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC-------cC---------cCc-ceeeeEEEEEEEECCEEEEEEEEeCCCccccc
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV-------VF---------YPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH 104 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~-------~~---------~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~ 104 (373)
...+.++++|. |||||+++|++. .+ ... ..|.+.....+.++.+...+.||||||+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 44688899997 999999999742 00 011 23333333445555555678999999999886
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCC
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSR 183 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~ 183 (373)
.........+|++++|+|+++....+. .+.+..+.. .++| ++++.||+|+.+..
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~------------------------~gi~~iIvvvNK~Dl~~~~ 144 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ------------------------VGVPYIVVFLNKCDMVDDE 144 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH------------------------cCCCEEEEEEEecccCCHH
Confidence 544445567899999999987322221 122223333 2455 45789999986531
Q ss_pred ccc--CHHHHHHHHHHcC-----CeEEEEcCCCCC
Q psy18160 184 RCV--EYSEGEAYAEENG-----LLFMETSAKTAM 211 (373)
Q Consensus 184 ~~v--~~~e~~~~~~~~~-----~~~~evSak~~~ 211 (373)
... ..+++.++++.++ ++++++||+++.
T Consensus 145 ~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 145 ELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 111 1235666666665 689999999875
No 230
>PRK12736 elongation factor Tu; Reviewed
Probab=99.34 E-value=1.5e-11 Score=121.22 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=101.3
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCc-------C---c-----C-c-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVV-------F---Y-----P-Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~-------~---~-----~-~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
....+.++++|. |||||++++++.. + . + . ..|.+.....+.+..+...+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 345688999997 9999999998631 1 0 0 1 2333333334445444556789999999888
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS 182 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~ 182 (373)
.......+..+|++++|+|+++...-. ..+.+..+.. .++| ++++.||+|+.+.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~------------------------~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ------------------------VGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH------------------------cCCCEEEEEEEecCCcch
Confidence 655555567889999999998642211 1222333333 2466 7789999998643
Q ss_pred Cccc--CHHHHHHHHHHcC-----CeEEEEcCCCCC--------CHHHHHHHHHHHcc
Q psy18160 183 RRCV--EYSEGEAYAEENG-----LLFMETSAKTAM--------NVNEIFVEIAKKLP 225 (373)
Q Consensus 183 ~~~v--~~~e~~~~~~~~~-----~~~~evSak~~~--------gI~~lf~~L~~~i~ 225 (373)
.... -.++..++.+..+ .+++++||++|. ++.++++.|.+.+.
T Consensus 144 ~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 144 EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 1111 1234555555555 479999999983 57888888877664
No 231
>KOG0098|consensus
Probab=99.34 E-value=3.5e-13 Score=114.85 Aligned_cols=62 Identities=24% Similarity=0.431 Sum_probs=58.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM 364 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~ 364 (373)
++.+|++++|+.|||||||+.||+++.|...|+.||| ++|-.+++.||+++|+|||||+|-|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiG--------vefg~r~~~id~k~IKlqiwDtaGq 65 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIG--------VEFGARMVTIDGKQIKLQIWDTAGQ 65 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceee--------eeeceeEEEEcCceEEEEEEecCCc
Confidence 4679999999999999999999999999999999999 9999999999999999999999854
No 232
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.34 E-value=9.8e-12 Score=113.03 Aligned_cols=107 Identities=15% Similarity=0.066 Sum_probs=69.6
Q ss_pred EEEEEEeCCCcccccccchhhcc--CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYR--NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN 167 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~--~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (373)
..+.+.||||+++|.......+. .+|++++|+|+.....- ...+++..+.. .+
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~------------------------~~ 138 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA------------------------LN 138 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH------------------------cC
Confidence 46789999999988654433343 68999999998765432 22234444443 35
Q ss_pred CeEEEEEeCCCCCCCCc-ccCHHHHHHHHHH--------------------------cCCeEEEEcCCCCCCHHHHHHHH
Q psy18160 168 IVIALAGNKADLPTSRR-CVEYSEGEAYAEE--------------------------NGLLFMETSAKTAMNVNEIFVEI 220 (373)
Q Consensus 168 ~piilVgnK~Dl~~~~~-~v~~~e~~~~~~~--------------------------~~~~~~evSak~~~gI~~lf~~L 220 (373)
+|+++|.||+|+.+..+ ....++..++.+. ...|+|.+||.+|+|++++...|
T Consensus 139 ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L 218 (224)
T cd04165 139 IPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL 218 (224)
T ss_pred CCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence 78999999999854311 1112222222221 12389999999999999998766
Q ss_pred H
Q psy18160 221 A 221 (373)
Q Consensus 221 ~ 221 (373)
.
T Consensus 219 ~ 219 (224)
T cd04165 219 N 219 (224)
T ss_pred H
Confidence 3
No 233
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.33 E-value=7.5e-12 Score=121.51 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=104.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--cee--eeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhh
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFS--AAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMY 110 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig--~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~ 110 (373)
+-++++++|. |||||+|.+++.+-... -.| .|.....+.++| +.+.+.||+|.-+-.... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4478899997 99999999999987776 222 355566677777 557899999975444332 234
Q ss_pred ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
+++||.+++|+|.+.+.+-.+.. .+. . ...+.|+++|.||.||..... ..
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-~~~---~----------------------~~~~~~~i~v~NK~DL~~~~~---~~- 343 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-LIE---L----------------------LPKKKPIIVVLNKADLVSKIE---LE- 343 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-HHH---h----------------------cccCCCEEEEEechhcccccc---cc-
Confidence 78999999999999853222221 111 1 235789999999999976511 11
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.+.-..+.+++.+||++++|++.|.+.|.+.+...
T Consensus 344 --~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 344 --SEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred --hhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 11112245789999999999999999998877644
No 234
>KOG0078|consensus
Probab=99.33 E-value=8e-13 Score=115.38 Aligned_cols=63 Identities=32% Similarity=0.429 Sum_probs=59.9
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+.+..+|++++|+++|||||++.||..++|...|..||| +||..+++.++|++|+|||||.|-
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG--------IDFk~kti~l~g~~i~lQiWDtaG 70 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG--------IDFKIKTIELDGKKIKLQIWDTAG 70 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEE--------EEEEEEEEEeCCeEEEEEEEEccc
Confidence 456789999999999999999999999999999999999 999999999999999999999984
No 235
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.32 E-value=1.6e-11 Score=111.35 Aligned_cols=118 Identities=9% Similarity=0.071 Sum_probs=80.5
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCc------------Cc---------ceeeeEEEEEEEEC--------CEEEEEEEEe
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFY------------PY---------LFSAAFITQTVCLD--------DVTIRFEIWD 96 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~------------~~---------Tig~~~~~~~i~~~--------~~~v~l~i~D 96 (373)
.++++|. |||||+.+|+...-. +. |+.... ..+.+. ++.+.+.+||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~--~~~~~~~~~~~~~~~~~~~i~iiD 79 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSA--ISLYFEYEEEDKADGNEYLINLID 79 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccce--EEEEEecCcccccCCCceEEEEEC
Confidence 3677776 999999999754210 00 222111 122222 4478899999
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160 97 TAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK 176 (373)
Q Consensus 97 t~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK 176 (373)
|||+++|......+++.+|++++|+|+++..+.+... .+..+.. .++|+++|+||
T Consensus 80 TPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~------------------------~~~p~ilviNK 134 (222)
T cd01885 80 SPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK------------------------ERVKPVLVINK 134 (222)
T ss_pred CCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEEC
Confidence 9999999999999999999999999999876554322 2222222 35799999999
Q ss_pred CCCCCCCcccCHHHHHH
Q psy18160 177 ADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 177 ~Dl~~~~~~v~~~e~~~ 193 (373)
+|+...+..++.+++..
T Consensus 135 iD~~~~e~~~~~~~~~~ 151 (222)
T cd01885 135 IDRLILELKLSPEEAYQ 151 (222)
T ss_pred CCcchhhhcCCHHHHHH
Confidence 99864435566665543
No 236
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.32 E-value=1.9e-12 Score=109.14 Aligned_cols=77 Identities=23% Similarity=0.213 Sum_probs=53.3
Q ss_pred hhhccCCcEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160 108 PMYYRNAQAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185 (373)
Q Consensus 108 ~~~~~~ad~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~ 185 (373)
...++.+|++++|+|+.++.+.. .+.+|+... ..+.|+++|.||+|+.++ .
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-------------------------~~~k~~iivlNK~DL~~~-~- 58 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-------------------------DPRKKNILLLNKADLLTE-E- 58 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-------------------------cCCCcEEEEEechhcCCH-H-
Confidence 34578999999999998876544 333443321 146799999999998543 1
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCC
Q psy18160 186 VEYSEGEAYAEENGLLFMETSAKTAMN 212 (373)
Q Consensus 186 v~~~e~~~~~~~~~~~~~evSak~~~g 212 (373)
...+..++.+..+.+++++||+++.+
T Consensus 59 -~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 59 -QRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred -HHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 22344555666678899999997654
No 237
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=4.7e-11 Score=104.28 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=110.3
Q ss_pred ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCc-CcCc--ceeeeEEEEEEEECCEEEEEEEEeCCC----------ccc
Q psy18160 39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVV-FYPY--LFSAAFITQTVCLDDVTIRFEIWDTAG----------QER 102 (373)
Q Consensus 39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~-~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G----------~e~ 102 (373)
+++-|+.+..-|+++|. |||||+|.+++.+ ..-. |+|.+.....+.+++. +.+.|.|| +++
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence 34556667789999998 9999999999966 2333 9998887777777765 77999999 355
Q ss_pred ccccchhhcc---CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 103 YHTLAPMYYR---NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 103 ~~~l~~~~~~---~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
+..+...|++ +-.++++++|+.....-.+. +.++.+.. .++|++||+||+|.
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~------------------------~~i~~~vv~tK~DK 147 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE------------------------LGIPVIVVLTKADK 147 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH------------------------cCCCeEEEEEcccc
Confidence 5666677765 46789999999776543333 33344443 57899999999998
Q ss_pred CCCCcccCHHHHHHHHHHcC----Ce--EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 180 PTSRRCVEYSEGEAYAEENG----LL--FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 180 ~~~~~~v~~~e~~~~~~~~~----~~--~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.... .........++... .. ++..|+.++.|++++...|.+.+.
T Consensus 148 i~~~--~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 148 LKKS--ERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CChh--HHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 6531 11111222333332 22 778899999999999999887664
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.31 E-value=3.1e-11 Score=119.03 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=100.5
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhC-------cC---c--C----c-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINV-------VF---Y--P----Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~-------~~---~--~----~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
....+.++++|. |||||++++++. .+ . + . ..|.+.......+..+...+.|+||||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 345688999997 999999999862 11 0 0 1 2233332333444444456789999999887
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEE-EEEeCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIA-LAGNKADLPTS 182 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lVgnK~Dl~~~ 182 (373)
.......+..+|++++|+|+.+...-+ ..+++..+.. .++|.+ ++.||+|+.+.
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~------------------------~gi~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ------------------------VGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH------------------------cCCCeEEEEEEecCCcch
Confidence 665556677899999999998743221 2233333333 346754 68999999642
Q ss_pred Cc--ccCHHHHHHHHHHcC-----CeEEEEcCCCCC----------CHHHHHHHHHHHcc
Q psy18160 183 RR--CVEYSEGEAYAEENG-----LLFMETSAKTAM----------NVNEIFVEIAKKLP 225 (373)
Q Consensus 183 ~~--~v~~~e~~~~~~~~~-----~~~~evSak~~~----------gI~~lf~~L~~~i~ 225 (373)
.. ....+++..+++.++ ++++++||+++. ++.+|++.|...+.
T Consensus 144 ~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 11 111234556666654 679999999984 67888888876653
No 239
>KOG0080|consensus
Probab=99.31 E-value=8.3e-13 Score=109.79 Aligned_cols=61 Identities=33% Similarity=0.535 Sum_probs=58.1
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+..+|+++||++|||||+|+.||..+.|......||| +||.+|.+.|||++++|.|||.|
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIG--------vDFkvk~m~vdg~~~KlaiWDTA 68 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIG--------VDFKVKVMQVDGKRLKLAIWDTA 68 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceee--------eeEEEEEEEEcCceEEEEEEecc
Confidence 45679999999999999999999999999999999999 99999999999999999999998
No 240
>KOG0095|consensus
Probab=99.30 E-value=1.9e-12 Score=106.25 Aligned_cols=60 Identities=32% Similarity=0.491 Sum_probs=57.3
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..||++++|..|||||||+.||.++-|+.....||| +||..|++.|+|.+|+|||||.|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatig--------vdfmiktvev~gekiklqiwdta 64 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIG--------VDFMIKTVEVNGEKIKLQIWDTA 64 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceee--------eeEEEEEEEECCeEEEEEEeecc
Confidence 4568999999999999999999999999999999999 89989999999999999999987
No 241
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.29 E-value=2.7e-11 Score=101.16 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=91.4
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcc----cccccchhhccCCcEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQE----RYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----~~~~l~~~~~~~ad~iilv 120 (373)
+++++|. |||||++++.+.+.... |..+.|. + .++||||.- .|..-.-....+||.+++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 6777776 99999999999876554 5443332 2 357999941 1111122234589999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
.|.+++.+.-- ..+. ..-+.|+|=|.||+|+..+ ....+.++++.+..|+
T Consensus 71 ~dat~~~~~~p-----P~fa-----------------------~~f~~pvIGVITK~Dl~~~--~~~i~~a~~~L~~aG~ 120 (143)
T PF10662_consen 71 QDATEPRSVFP-----PGFA-----------------------SMFNKPVIGVITKIDLPSD--DANIERAKKWLKNAGV 120 (143)
T ss_pred ecCCCCCccCC-----chhh-----------------------cccCCCEEEEEECccCccc--hhhHHHHHHHHHHcCC
Confidence 99998653110 0000 1125799999999999842 2567778888888886
Q ss_pred -eEEEEcCCCCCCHHHHHHHHH
Q psy18160 201 -LFMETSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 201 -~~~evSak~~~gI~~lf~~L~ 221 (373)
..|++|+.+|+||++|.+.|-
T Consensus 121 ~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 121 KEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCeEEEECCCCcCHHHHHHHHh
Confidence 479999999999999998873
No 242
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.29 E-value=5.2e-12 Score=110.09 Aligned_cols=157 Identities=18% Similarity=0.072 Sum_probs=98.4
Q ss_pred cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185 (373)
Q Consensus 106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~ 185 (373)
.....+++||.+++|+|++++....+. .++.. ..+.|+++|.||+|+.+. .
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~--------------------------~~~k~~ilVlNK~Dl~~~-~- 62 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI--------------------------LGNKPRIIVLNKADLADP-K- 62 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH--------------------------hcCCCEEEEEehhhcCCh-H-
Confidence 345668899999999999876532211 11111 124689999999999542 1
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccc
Q psy18160 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIH 265 (373)
Q Consensus 186 v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~ 265 (373)
...+..++.+..+..++.+||+++.|++++.+.+...+...... ..
T Consensus 63 -~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~-~~-------------------------------- 108 (171)
T cd01856 63 -KTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLKDIEKL-KA-------------------------------- 108 (171)
T ss_pred -HHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHHHHhhh-hh--------------------------------
Confidence 11222233344456789999999999999999988776421000 00
Q ss_pred eeecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecc
Q psy18160 266 ILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMP 345 (373)
Q Consensus 266 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~ 345 (373)
.......++++++|.+++|||++++++....+. ...++.| ..+...
T Consensus 109 -------------------------~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~--------~T~~~~ 154 (171)
T cd01856 109 -------------------------KGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPG--------VTKGIQ 154 (171)
T ss_pred -------------------------cccCCCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCC--------EEeeeE
Confidence 000112368899999999999999999987764 2334445 223223
Q ss_pred eeeeCCeEEEEEehhhH
Q psy18160 346 TKNRLNNNVPITFVWVI 362 (373)
Q Consensus 346 ~~~v~~~~~~l~iw~~~ 362 (373)
.+.++ ..+.|||.+
T Consensus 155 ~~~~~---~~~~~iDtp 168 (171)
T cd01856 155 WIKIS---PGIYLLDTP 168 (171)
T ss_pred EEEec---CCEEEEECC
Confidence 33343 346788875
No 243
>KOG0394|consensus
Probab=99.27 E-value=9e-13 Score=112.17 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=57.2
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
...+|++++|++|||||+|++||+.+.|...|..||| .||..|.+.||++.++|||||.|-
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg--------adFltKev~Vd~~~vtlQiWDTAG 67 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG--------ADFLTKEVQVDDRSVTLQIWDTAG 67 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccc--------hhheeeEEEEcCeEEEEEEEeccc
Confidence 3458999999999999999999999999999999999 888889999999999999999983
No 244
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.26 E-value=7e-11 Score=110.22 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=74.2
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCc---------------------Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFY---------------------PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER 102 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~---------------------~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~ 102 (373)
.++++|- |||||+++++...-. +. ..|.++......+..+.+.+.+|||+|+++
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 4667775 999999999842100 00 122333334444555567899999999998
Q ss_pred ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 103 YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 103 ~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
|......+++.+|++++|+|.++.... ....++..... .++|+++++||+|+...
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~------------------------~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL------------------------RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh------------------------cCCCEEEEEECCccCCC
Confidence 887777788999999999999875321 22233333322 46899999999998653
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.26 E-value=2.9e-11 Score=127.38 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=77.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcC-------------c----Cc------ceeeeEEEEEEEECCEEEEEEEEeCCC
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVF-------------Y----PY------LFSAAFITQTVCLDDVTIRFEIWDTAG 99 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~-------------~----~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G 99 (373)
...+++++|. |||||+++|+...- . +. |+.... ..+.. ..+.+.+|||+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~--~~~~~--~~~~i~liDtPG 82 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA--TSCDW--DNHRINLIDTPG 82 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce--EEEEE--CCEEEEEEECCC
Confidence 4567888886 99999999985310 0 00 332222 22333 356789999999
Q ss_pred cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
+.+|...+..+++.+|++++|+|.++..+......| ..+.. .++|+++|+||+|+
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~------------------------~~~p~iiviNK~D~ 137 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR------------------------YGIPRLIFINKMDR 137 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh------------------------cCCCEEEEEECCCC
Confidence 999988889999999999999999987766554433 33333 36899999999998
Q ss_pred CCC
Q psy18160 180 PTS 182 (373)
Q Consensus 180 ~~~ 182 (373)
...
T Consensus 138 ~~~ 140 (687)
T PRK13351 138 VGA 140 (687)
T ss_pred CCC
Confidence 653
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.26 E-value=4.3e-11 Score=119.38 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=95.8
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCc---------------------------CcCc-----ceeeeEEEEEEEECCEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVV---------------------------FYPY-----LFSAAFITQTVCLDDVT 89 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~---------------------------~~~~-----Tig~~~~~~~i~~~~~~ 89 (373)
...+.++++|. |||||+-+++..- +.+. ..|.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 34577888886 9999998887310 0010 22222222233344455
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHH-------HHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG-------RAKSWVKELQRMAPPNIDTFGRAKSWVKELQR 162 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~-------~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
..+.++|+||+++|.......++.+|++|+|+|+++ ..|+ ...+.+..+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~--------------------- 142 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT--------------------- 142 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH---------------------
Confidence 678999999999998888888999999999999986 3332 22222222222
Q ss_pred cCCCCC-eEEEEEeCCCCCCCC----c-ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q psy18160 163 MAPPNI-VIALAGNKADLPTSR----R-CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNE 215 (373)
Q Consensus 163 ~~~~~~-piilVgnK~Dl~~~~----~-~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~ 215 (373)
.++ ++++++||+|+.+.. + ....+++..+++..| ++|+++||++|+|+.+
T Consensus 143 ---~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 143 ---LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ---cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 345 578899999986210 0 012445667777766 5799999999999854
No 247
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.26 E-value=6.9e-12 Score=121.92 Aligned_cols=94 Identities=28% Similarity=0.323 Sum_probs=70.3
Q ss_pred cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
.++|..+...+++.++++++|+|+.+.. ..|..++.+ . ..+.|+++|+||+|+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~---------------------~-~~~~piilV~NK~DL 102 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKR---------------------F-VGGNPVLLVGNKIDL 102 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHH---------------------H-hCCCCEEEEEEchhh
Confidence 5678888899999999999999997654 234444444 1 135789999999999
Q ss_pred CCCCcccCHHHHHH----HHHHcCC---eEEEEcCCCCCCHHHHHHHHHH
Q psy18160 180 PTSRRCVEYSEGEA----YAEENGL---LFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 180 ~~~~~~v~~~e~~~----~~~~~~~---~~~evSak~~~gI~~lf~~L~~ 222 (373)
... .+..++..+ +++..++ .++++||+++.|++++|+.|.+
T Consensus 103 l~k--~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 103 LPK--SVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred CCC--CCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 653 344444443 4666776 4899999999999999998854
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.3e-10 Score=114.39 Aligned_cols=146 Identities=17% Similarity=0.149 Sum_probs=101.9
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC-EEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD-VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~-~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
-++++|- |||||+..+-....... -+.-......+.++. ..-.+.|.||||++-|..|+..-..-+|.++||+
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV 86 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVV 86 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence 4566664 99999999988877765 222222233444431 2345889999999999999999899999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG-- 199 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~-- 199 (373)
|++|.---+.++. +..++ ..++|++++.||+|.++. .++....-..++|
T Consensus 87 a~dDGv~pQTiEA-I~hak------------------------~a~vP~iVAiNKiDk~~~----np~~v~~el~~~gl~ 137 (509)
T COG0532 87 AADDGVMPQTIEA-INHAK------------------------AAGVPIVVAINKIDKPEA----NPDKVKQELQEYGLV 137 (509)
T ss_pred EccCCcchhHHHH-HHHHH------------------------HCCCCEEEEEecccCCCC----CHHHHHHHHHHcCCC
Confidence 9998432222221 11222 368999999999999754 2333333333333
Q ss_pred -------CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 200 -------LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 200 -------~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
..++++||++|+|+++|+..++-.
T Consensus 138 ~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 138 PEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred HhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 369999999999999999887643
No 249
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.22 E-value=1.6e-10 Score=117.33 Aligned_cols=110 Identities=11% Similarity=0.037 Sum_probs=74.8
Q ss_pred cEEEEEEcC---ChhHHHHHhhh--CcC----------------c---Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVIN--VVF----------------Y---PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ 100 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~--~~~----------------~---~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~ 100 (373)
...++++|- |||||+++++. +.. . +. ..|..+....+.++.+.+.+.+|||+|+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 346777775 99999999973 110 0 00 2233333333444444577999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160 101 ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180 (373)
Q Consensus 101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 180 (373)
+.|......+++.+|++|+|+|+++.... ...+++..... .++|+++++||+|+.
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~------------------------~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL------------------------RDTPIFTFINKLDRD 144 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh------------------------cCCCEEEEEECCccc
Confidence 99988777889999999999999875321 22333333332 478999999999985
Q ss_pred C
Q psy18160 181 T 181 (373)
Q Consensus 181 ~ 181 (373)
.
T Consensus 145 ~ 145 (526)
T PRK00741 145 G 145 (526)
T ss_pred c
Confidence 4
No 250
>KOG0092|consensus
Probab=99.22 E-value=8.4e-12 Score=107.22 Aligned_cols=59 Identities=47% Similarity=0.648 Sum_probs=56.4
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|+.+||||+|+.||..+.|.+...|||| ..|..+++.++++.|++.|||+|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIG--------aaF~tktv~~~~~~ikfeIWDTA 62 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIG--------AAFLTKTVTVDDNTIKFEIWDTA 62 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccc--------cEEEEEEEEeCCcEEEEEEEEcC
Confidence 468999999999999999999999999999999999 88889999999999999999997
No 251
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.21 E-value=4e-11 Score=111.32 Aligned_cols=99 Identities=22% Similarity=0.163 Sum_probs=77.7
Q ss_pred ccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 101 ERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 101 e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
++-..+.+.-+.+.|-.++|+++.+|+ +...+.+++-.+.. .++..+||.||+||
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~------------------------~gi~pvIvlnK~DL 122 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA------------------------GGIEPVIVLNKIDL 122 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH------------------------cCCcEEEEEEcccc
Confidence 455556666677888899999998887 88888898887766 57788889999999
Q ss_pred CCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 180 PTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 180 ~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.++..... ++....+...|++.+.+|++++.+++++...+...+
T Consensus 123 ~~~~~~~~-~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 123 LDDEEAAV-KELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred CcchHHHH-HHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCe
Confidence 87522222 456677888999999999999999999988775443
No 252
>KOG0093|consensus
Probab=99.20 E-value=1.1e-11 Score=101.74 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=66.7
Q ss_pred CCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 283 RIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 283 ~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+.++....+++.++++|++++|++.+|||+++-||++++|...|.+|+| +||..|++.-.+++|+|||||.|
T Consensus 7 ~~~~~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvG--------idFKvKTvyr~~kRiklQiwDTa 78 (193)
T KOG0093|consen 7 YGASKDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--------IDFKVKTVYRSDKRIKLQIWDTA 78 (193)
T ss_pred CCCccccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeee--------eeEEEeEeeecccEEEEEEEecc
Confidence 3444555677889999999999999999999999999999999999999 89999999999999999999998
Q ss_pred HH
Q psy18160 363 MM 364 (373)
Q Consensus 363 ~~ 364 (373)
-|
T Consensus 79 gq 80 (193)
T KOG0093|consen 79 GQ 80 (193)
T ss_pred cc
Confidence 65
No 253
>PLN03126 Elongation factor Tu; Provisional
Probab=99.20 E-value=1.7e-10 Score=115.69 Aligned_cols=144 Identities=13% Similarity=0.019 Sum_probs=91.6
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCc------C----------cCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVV------F----------YPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~------~----------~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
....+.++++|. |||||+++|+... . .+. ..|.+.......+..+...+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 456688999997 9999999999521 0 111 3333332223333333456789999999988
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS 182 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~ 182 (373)
.......+..+|++++|+|+.+...-+ ..+++..+.. .++| ++++.||+|+.+.
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~------------------------~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ------------------------VGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH------------------------cCCCeEEEEEecccccCH
Confidence 766666677899999999988653222 2333333333 3566 7889999998653
Q ss_pred Ccc--cCHHHHHHHHHHc-----CCeEEEEcCCCCCC
Q psy18160 183 RRC--VEYSEGEAYAEEN-----GLLFMETSAKTAMN 212 (373)
Q Consensus 183 ~~~--v~~~e~~~~~~~~-----~~~~~evSak~~~g 212 (373)
+.. .-.++..++.+.. .++++.+||.++.+
T Consensus 213 ~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 213 EELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 110 1112445555554 45799999998754
No 254
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.20 E-value=1.8e-10 Score=102.66 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=91.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceee-eEEEEEEEEC-CEEEEEEEEeCCCcccccccchhh-----ccCC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSA-AFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMY-----YRNA 114 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~-~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~-----~~~a 114 (373)
++++++|. |||||+|.+++..+... +.+. ........+. +....+.+|||+|..........| +.++
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~ 81 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEY 81 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCc
Confidence 57899997 99999999998765432 2231 1100011111 112368999999986443333333 6688
Q ss_pred cEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc------C
Q psy18160 115 QAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV------E 187 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v------~ 187 (373)
|+++++.|- +|...+ .|+..+.. .+.|+++|+||+|+....... .
T Consensus 82 d~~l~v~~~----~~~~~d~~~~~~l~~------------------------~~~~~ilV~nK~D~~~~~~~~~~~~~~~ 133 (197)
T cd04104 82 DFFIIISST----RFSSNDVKLAKAIQC------------------------MGKKFYFVRTKVDRDLSNEQRSKPRSFN 133 (197)
T ss_pred CEEEEEeCC----CCCHHHHHHHHHHHH------------------------hCCCEEEEEecccchhhhhhcccccccc
Confidence 998888432 233333 45555544 256899999999984321100 1
Q ss_pred HHH----HHHH----HHHcC---CeEEEEcCC--CCCCHHHHHHHHHHHcchh
Q psy18160 188 YSE----GEAY----AEENG---LLFMETSAK--TAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 188 ~~e----~~~~----~~~~~---~~~~evSak--~~~gI~~lf~~L~~~i~~~ 227 (373)
.++ .++. ....+ -++|.+|+. .+.++..+.+.|...+.+.
T Consensus 134 ~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 134 REQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 111 1111 12222 268999998 5789999999999988753
No 255
>KOG0079|consensus
Probab=99.20 E-value=1.6e-12 Score=106.69 Aligned_cols=60 Identities=33% Similarity=0.496 Sum_probs=57.0
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|+++||||+|+.||..+.|+..|..||| +||..+++.|.|..|+|+|||.|
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiG--------vDfkirTv~i~G~~VkLqIwDtA 65 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIG--------VDFKIRTVDINGDRVKLQIWDTA 65 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEee--------eeEEEEEeecCCcEEEEEEeecc
Confidence 3457889999999999999999999999999999999 99999999999999999999987
No 256
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.18 E-value=1.2e-10 Score=116.99 Aligned_cols=149 Identities=15% Similarity=0.036 Sum_probs=89.8
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCc-----------------------------Cc-----ceeeeEEEEEEEE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFY-----------------------------PY-----LFSAAFITQTVCL 85 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~-----------------------------~~-----Tig~~~~~~~i~~ 85 (373)
.....++++++|. |||||+.+++...-. +. ..|.+.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 3456689999997 999999999743110 00 1111111122223
Q ss_pred CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160 86 DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165 (373)
Q Consensus 86 ~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
..+...+.||||||+++|.......++.+|++++|+|+++...-.....+ ..+.. .
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~---------------------l-- 158 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATL---------------------L-- 158 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHH---------------------h--
Confidence 33345688999999988865444457899999999999764321111111 11111 1
Q ss_pred CCCeEEEEEeCCCCCCCCcccCHH----HHHHHHHHcC----CeEEEEcCCCCCCHHHH
Q psy18160 166 PNIVIALAGNKADLPTSRRCVEYS----EGEAYAEENG----LLFMETSAKTAMNVNEI 216 (373)
Q Consensus 166 ~~~piilVgnK~Dl~~~~~~v~~~----e~~~~~~~~~----~~~~evSak~~~gI~~l 216 (373)
...|++|+.||+|+... +....+ +...+.+..+ .+++++||++|.|++++
T Consensus 159 g~~~iIvvvNKiD~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 159 GIKHLVVAVNKMDLVDY-SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred CCCceEEEEEeeccccc-hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 12478999999998643 111122 2223333333 67999999999999864
No 257
>CHL00071 tufA elongation factor Tu
Probab=99.18 E-value=2.9e-10 Score=112.53 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=92.1
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCc----------------Cc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFY----------------PY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~----------------~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
....+.++++|. |||||++++++..-. .. ..|.+.......+..+...+.+.||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 345688999997 999999999964110 00 2333333333334334456789999999887
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS 182 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~ 182 (373)
.......+..+|++++|+|+.....- ...+.+..+.. .++| ++++.||+|+.+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~------------------------~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ------------------------VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH------------------------cCCCEEEEEEEccCCCCH
Confidence 66556667899999999999864321 12223333333 3567 7789999999653
Q ss_pred Ccc--cCHHHHHHHHHHcC-----CeEEEEcCCCCCC
Q psy18160 183 RRC--VEYSEGEAYAEENG-----LLFMETSAKTAMN 212 (373)
Q Consensus 183 ~~~--v~~~e~~~~~~~~~-----~~~~evSak~~~g 212 (373)
... .-.+++.++.+..+ ++++.+||.+|.|
T Consensus 144 ~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 144 EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 110 11234555555544 5799999999874
No 258
>KOG0077|consensus
Probab=99.18 E-value=4.1e-11 Score=100.39 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=110.5
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
-+++++|= |||||++.+.+++.... |...+ +..+.+.+ ++++.+|.+|+..-+..|+.|+..+|++++.+|
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd 96 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD 96 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeee
Confidence 47888884 99999999999877665 43332 33455554 678999999999889999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH---HHH--
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY---AEE-- 197 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~---~~~-- 197 (373)
+-|.+.|.+...-++.+... ......|+++.+||+|.+.. .+.++.... ...
T Consensus 97 a~d~er~~es~~eld~ll~~--------------------e~la~vp~lilgnKId~p~a---~se~~l~~~l~l~~~t~ 153 (193)
T KOG0077|consen 97 AYDQERFAESKKELDALLSD--------------------ESLATVPFLILGNKIDIPYA---ASEDELRFHLGLSNFTT 153 (193)
T ss_pred hhhHHHhHHHHHHHHHHHhH--------------------HHHhcCcceeecccccCCCc---ccHHHHHHHHHHHHHhc
Confidence 99999998887655555431 23467899999999999765 344443221 111
Q ss_pred -cC-----------CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 198 -NG-----------LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 198 -~~-----------~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.+ +..|.||...+.+.-+.|.++...
T Consensus 154 ~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 154 GKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred ccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 11 247888988888888888877543
No 259
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.18 E-value=4e-10 Score=105.64 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=89.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc-------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccc-------
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY-------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERY------- 103 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~------- 103 (373)
.++++++|. |||||+|++++..+... |++.+.....+..+|..+.+.+|||+|...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 468889987 99999999998876432 5555666667777888899999999994222
Q ss_pred -------------------cccchhhcc--CCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160 104 -------------------HTLAPMYYR--NAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQ 161 (373)
Q Consensus 104 -------------------~~l~~~~~~--~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
...+...+. .+|+++++++.+... +... .+.+..+.
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~--------------------- 141 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS--------------------- 141 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---------------------
Confidence 122223444 466777777765411 1111 11222221
Q ss_pred hcCCCCCeEEEEEeCCCCCCCC-cccCHHHHHHHHHHcCCeEEEEcCCC
Q psy18160 162 RMAPPNIVIALAGNKADLPTSR-RCVEYSEGEAYAEENGLLFMETSAKT 209 (373)
Q Consensus 162 ~~~~~~~piilVgnK~Dl~~~~-~~v~~~e~~~~~~~~~~~~~evSak~ 209 (373)
..+|+++|+||+|+.... .....+.+.+.++.+++++|......
T Consensus 142 ----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 142 ----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred ----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 257999999999985421 22334556777888899998877643
No 260
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.17 E-value=4.9e-11 Score=102.38 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=56.0
Q ss_pred hccCCcEEEEEEECCCHhh--HHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160 110 YYRNAQAAIIVYDITNQDT--FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~S--f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~ 187 (373)
.++++|.+++|.|+.++.. ...+.+++. . ...+.|+++|.||+|+.+. . .
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~----------------------~~~~~p~ilVlNKiDl~~~-~--~ 56 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K----------------------EKPHKHLIFVLNKCDLVPT-W--V 56 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---h----------------------ccCCCCEEEEEEchhcCCH-H--H
Confidence 4678999999999988642 223333322 1 1235799999999999643 1 1
Q ss_pred HHHH-HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 188 YSEG-EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 188 ~~e~-~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
..+. ..+.+.+....+.+||+++.|++++.+.+...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 57 TARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHH
Confidence 1121 222222223357899999999999998886543
No 261
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.17 E-value=1.5e-10 Score=114.37 Aligned_cols=103 Identities=24% Similarity=0.175 Sum_probs=66.6
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
...+.|+||||+++|.......+..+|++++|+|+.....-+..+.| ..+.. . ...
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~---------------------~--~~~ 134 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASL---------------------L--GIR 134 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHH---------------------c--CCC
Confidence 45788999999998866555668899999999999764322111111 11222 1 123
Q ss_pred eEEEEEeCCCCCCCCccc---CHHHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q psy18160 169 VIALAGNKADLPTSRRCV---EYSEGEAYAEENG---LLFMETSAKTAMNVNE 215 (373)
Q Consensus 169 piilVgnK~Dl~~~~~~v---~~~e~~~~~~~~~---~~~~evSak~~~gI~~ 215 (373)
+++++.||+|+....... ..++...+.+..+ .+++++||++|.|+++
T Consensus 135 ~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 135 HVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 688999999986431111 1122333445444 4699999999999986
No 262
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.16 E-value=5.5e-10 Score=106.44 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred EEEEcC---ChhHHHHHhhhCcCcCc---------ceeeeEEEEE---------------EEECC-EEEEEEEEeCCCc-
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFYPY---------LFSAAFITQT---------------VCLDD-VTIRFEIWDTAGQ- 100 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~~~---------Tig~~~~~~~---------------i~~~~-~~v~l~i~Dt~G~- 100 (373)
++++|. |||||+|++++..+... ++|..+.... ..+++ ..+.+++|||+|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 356776 99999999999874321 4444332111 01233 3477999999998
Q ss_pred ---ccccccchhh---ccCCcEEEEEEECCC
Q psy18160 101 ---ERYHTLAPMY---YRNAQAAIIVYDITN 125 (373)
Q Consensus 101 ---e~~~~l~~~~---~~~ad~iilv~D~~~ 125 (373)
+++..+...+ +++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5566666665 899999999999973
No 263
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.16 E-value=3e-10 Score=113.23 Aligned_cols=157 Identities=11% Similarity=0.114 Sum_probs=99.7
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCc---CcCc-----ceeeeEEEEEE-------------EECCE------------
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVV---FYPY-----LFSAAFITQTV-------------CLDDV------------ 88 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~---~~~~-----Tig~~~~~~~i-------------~~~~~------------ 88 (373)
...+.+.++|- |||||+..+++.. +.+. |+..-|..... .++..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 44577888886 9999999999642 2322 44433321100 01100
Q ss_pred ----EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160 89 ----TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM 163 (373)
Q Consensus 89 ----~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
...+.++|+||+++|......-+..+|++++|+|+++.. ..+. .+.+..+..
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~---------------------- 168 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEI---------------------- 168 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHH----------------------
Confidence 236789999999988665556677999999999998641 1111 122222222
Q ss_pred CCCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 164 APPNIVIALAGNKADLPTSRRC-VEYSEGEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 164 ~~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
..-.|+++|.||+|+.+.... ...+++.++.+. .+.+++++||++|.|+++|++.|.+.+.
T Consensus 169 -lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 169 -MKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred -cCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 122468999999998653111 112233333332 3578999999999999999999987665
No 264
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.15 E-value=9.7e-11 Score=109.95 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=84.6
Q ss_pred chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
....++.+|++++|+|+.++.+..+. ++.... .+.|+++|.||+|+.+. .
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-------------------------~~kp~IiVlNK~DL~~~-~-- 64 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-------------------------GNKPRLIVLNKADLADP-A-- 64 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-------------------------CCCCEEEEEEccccCCH-H--
Confidence 45567899999999999876543221 111111 24689999999998542 1
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccce
Q psy18160 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHI 266 (373)
Q Consensus 187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~ 266 (373)
..++..++.+..+.+++.+||+++.|++++.+.+.+.+..........
T Consensus 65 ~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~-------------------------------- 112 (276)
T TIGR03596 65 VTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAK-------------------------------- 112 (276)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhc--------------------------------
Confidence 112222333445678899999999999999998877664322110000
Q ss_pred eecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc
Q psy18160 267 LTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF 322 (373)
Q Consensus 267 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f 322 (373)
+ .....++++++|.+++|||||++++.....
T Consensus 113 ----------------------~---~~~~~~~~~~vG~~nvGKSslin~l~~~~~ 143 (276)
T TIGR03596 113 ----------------------G---LKNRPIRAMIVGIPNVGKSTLINRLAGKKV 143 (276)
T ss_pred ----------------------c---CCCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 0 001237889999999999999999986543
No 265
>KOG0087|consensus
Probab=99.15 E-value=2.6e-11 Score=105.61 Aligned_cols=66 Identities=35% Similarity=0.453 Sum_probs=61.1
Q ss_pred cccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 290 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 290 ~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
....-++-||++++|+++||||-|+.||..++|..+-.+||| ++|...++.|||+.|+.||||.|-
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIG--------vef~t~t~~vd~k~vkaqIWDTAG 72 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIG--------VEFATRTVNVDGKTVKAQIWDTAG 72 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCccccccee--------EEEEeeceeecCcEEEEeeecccc
Confidence 344567889999999999999999999999999999999999 899999999999999999999984
No 266
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.14 E-value=4.7e-10 Score=120.59 Aligned_cols=138 Identities=20% Similarity=0.160 Sum_probs=91.6
Q ss_pred ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECC--E--------------EEEEEEEeCCCcccccccchhhccCC
Q psy18160 56 RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDD--V--------------TIRFEIWDTAGQERYHTLAPMYYRNA 114 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~--~--------------~v~l~i~Dt~G~e~~~~l~~~~~~~a 114 (373)
+||||+.++.+...... |.....+ .+.++. + .-.+.||||||++.|..++...++.+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~--~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~a 550 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGAT--EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLA 550 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceE--EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccC
Confidence 79999999998877655 3332222 222221 0 11278999999999998888888999
Q ss_pred cEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC----
Q psy18160 115 QAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE---- 187 (373)
Q Consensus 115 d~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~---- 187 (373)
|++++|+|+++ +.+++.+. .+.. .++|+++|+||+|+........
T Consensus 551 DivlLVVDa~~Gi~~qT~e~I~----~lk~------------------------~~iPiIVViNKiDL~~~~~~~~~~~~ 602 (1049)
T PRK14845 551 DLAVLVVDINEGFKPQTIEAIN----ILRQ------------------------YKTPFVVAANKIDLIPGWNISEDEPF 602 (1049)
T ss_pred CEEEEEEECcccCCHhHHHHHH----HHHH------------------------cCCCEEEEEECCCCccccccccchhh
Confidence 99999999987 45555443 2222 3579999999999864211000
Q ss_pred -----------HHHHH----HH---HHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 188 -----------YSEGE----AY---AEEN---------------GLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 188 -----------~~e~~----~~---~~~~---------------~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.++.. ++ ...+ ..+++++||++|+||++|...|...
T Consensus 603 ~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 603 LLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 01110 00 1111 2579999999999999999877543
No 267
>PRK00049 elongation factor Tu; Reviewed
Probab=99.14 E-value=7.9e-10 Score=108.99 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=98.2
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcC----------c-----C-c-ceeeeEEEEEEEECCEEEEEEEEeCCCccccc
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVF----------Y-----P-Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH 104 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~----------~-----~-~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~ 104 (373)
...+.++++|. |||||+++++.... . + . ..|.+.......+..+...+.+.||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 45678899986 99999999986210 0 0 1 23333333344444444567899999998876
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEE-EEEeCCCCCCCC
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIA-LAGNKADLPTSR 183 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lVgnK~Dl~~~~ 183 (373)
......+..+|++++|+|+.+...- ...+++..+.. .++|.+ ++.||+|+.+..
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~------------------------~g~p~iiVvvNK~D~~~~~ 144 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ------------------------VGVPYIVVFLNKCDMVDDE 144 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH------------------------cCCCEEEEEEeecCCcchH
Confidence 6556667899999999999864322 22233333333 356765 689999986421
Q ss_pred ccc--CHHHHHHHHHHcC-----CeEEEEcCCCCC----------CHHHHHHHHHHHc
Q psy18160 184 RCV--EYSEGEAYAEENG-----LLFMETSAKTAM----------NVNEIFVEIAKKL 224 (373)
Q Consensus 184 ~~v--~~~e~~~~~~~~~-----~~~~evSak~~~----------gI~~lf~~L~~~i 224 (373)
... -.++..++....+ .+++.+||+++. ++..+++.|...+
T Consensus 145 ~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 145 ELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 111 1123444544443 579999999875 4677777777654
No 268
>PLN03127 Elongation factor Tu; Provisional
Probab=99.13 E-value=8.1e-10 Score=110.20 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=100.1
Q ss_pred cccCCCCCCcEEEEEEcC---ChhHHHHHhhhC------c----C------cCc-ceeeeEEEEEEEECCEEEEEEEEeC
Q psy18160 38 MMSGKRQSDCMAQIWLKD---RVDCMTQIVINV------V----F------YPY-LFSAAFITQTVCLDDVTIRFEIWDT 97 (373)
Q Consensus 38 ~~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~------~----~------~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt 97 (373)
++........+.++++|- |||||++++.+. . + .+. ..|.+.......+..+...+.+.||
T Consensus 52 ~~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDt 131 (447)
T PLN03127 52 MATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDC 131 (447)
T ss_pred HhhhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEEC
Confidence 444555667788999997 999999999722 1 0 011 2333333344445445567889999
Q ss_pred CCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeC
Q psy18160 98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNK 176 (373)
Q Consensus 98 ~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK 176 (373)
||+++|.......+..+|++++|+|.++...-+ ..+.+..+.. .++| ++++.||
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~------------------------~gip~iIvviNK 186 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ------------------------VGVPSLVVFLNK 186 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH------------------------cCCCeEEEEEEe
Confidence 999887554444566799999999997643222 1222333333 3567 5789999
Q ss_pred CCCCCCCccc-CH-HHHHHHHHHc-----CCeEEEEcCC---CCCC-------HHHHHHHHHHHcc
Q psy18160 177 ADLPTSRRCV-EY-SEGEAYAEEN-----GLLFMETSAK---TAMN-------VNEIFVEIAKKLP 225 (373)
Q Consensus 177 ~Dl~~~~~~v-~~-~e~~~~~~~~-----~~~~~evSak---~~~g-------I~~lf~~L~~~i~ 225 (373)
+|+.+..... .. ++..++.... .++++.+||. ++.| +.+|++.|...+.
T Consensus 187 iDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 187 VDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred eccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 9986531100 11 1333444433 2578888876 4555 6788888777654
No 269
>KOG1423|consensus
Probab=99.13 E-value=7.7e-10 Score=101.66 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=99.9
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCcceee--eEEEEEEEECCEEEEEEEEeCCCcccccc------------c
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPYLFSA--AFITQTVCLDDVTIRFEIWDTAGQERYHT------------L 106 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~------------l 106 (373)
...+..++++|. |||||.|.+++.+..+.+--+ +.....-.+-.....+.++||+|.-.-.. -
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 446678888887 999999999999988771111 11111222334456789999999521111 1
Q ss_pred chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-
Q psy18160 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC- 185 (373)
Q Consensus 107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~- 185 (373)
-...+..||++++|+|+++....-+. +.+..+.+ ..++|-++|.||.|.....+.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~-----------------------ys~ips~lvmnkid~~k~k~~L 204 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEE-----------------------YSKIPSILVMNKIDKLKQKRLL 204 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHH-----------------------HhcCCceeeccchhcchhhhHH
Confidence 12246689999999999974322111 22233333 257899999999997654211
Q ss_pred -----------cC---HHHHHHHHHHc---------CC----eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 186 -----------VE---YSEGEAYAEEN---------GL----LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 186 -----------v~---~~e~~~~~~~~---------~~----~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+. .+-.+++.... |. .+|.+||++|+||+++-++|..+...
T Consensus 205 l~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 205 LNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 11 11111121111 12 38999999999999999999988764
No 270
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.12 E-value=6.2e-10 Score=113.08 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=75.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhh--CcCc-------------------Cc--ceeeeEEEEEEEECCEEEEEEEEeCCC
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVIN--VVFY-------------------PY--LFSAAFITQTVCLDDVTIRFEIWDTAG 99 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~--~~~~-------------------~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G 99 (373)
+...++++|- |||||+++++. +... +. ..|..+....+.++.+.+.+.+|||+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3456777775 99999999853 1110 00 334444445555555668899999999
Q ss_pred cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
+..|......+++.+|++|+|+|.++... .....++..+.. .++|+++++||+|+
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~------------------------~~~PiivviNKiD~ 144 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL------------------------RDTPIFTFMNKLDR 144 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh------------------------cCCCEEEEEECccc
Confidence 99888777778999999999999987421 122333333222 46899999999998
Q ss_pred C
Q psy18160 180 P 180 (373)
Q Consensus 180 ~ 180 (373)
.
T Consensus 145 ~ 145 (527)
T TIGR00503 145 D 145 (527)
T ss_pred c
Confidence 5
No 271
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.11 E-value=2e-10 Score=108.38 Aligned_cols=129 Identities=22% Similarity=0.225 Sum_probs=85.5
Q ss_pred chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
....+..+|++++|+|+.++.+... .++.... .+.|+++|.||+|+.+. .
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-------------------------~~kp~iiVlNK~DL~~~---~ 67 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-------------------------GNKPRLLILNKSDLADP---E 67 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-------------------------CCCCEEEEEEchhcCCH---H
Confidence 3456789999999999977654322 1111111 25689999999998542 1
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccce
Q psy18160 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHI 266 (373)
Q Consensus 187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~ 266 (373)
..++..++.+..+.+++.+||+++.|++++.+.+...+..........+
T Consensus 68 ~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~------------------------------- 116 (287)
T PRK09563 68 VTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKG------------------------------- 116 (287)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcc-------------------------------
Confidence 1222333334456788999999999999999988777653321100000
Q ss_pred eecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc
Q psy18160 267 LTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF 322 (373)
Q Consensus 267 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f 322 (373)
.....++++++|.++||||++++++.....
T Consensus 117 --------------------------~~~~~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 117 --------------------------MRPRAIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred --------------------------cCcCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 001237889999999999999999987543
No 272
>KOG0086|consensus
Probab=99.10 E-value=1.9e-11 Score=100.80 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=58.6
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..++.+|++++|+.|.|||||+.+|..+.|.++-..||| ++|.++.+.|+++.|+|||||.|
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiG--------veFgSrIinVGgK~vKLQIWDTA 66 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIG--------VEFGSRIVNVGGKTVKLQIWDTA 66 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceee--------eeecceeeeecCcEEEEEEeecc
Confidence 456789999999999999999999999999999999999 99999999999999999999987
No 273
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.10 E-value=4.8e-10 Score=116.96 Aligned_cols=147 Identities=19% Similarity=0.086 Sum_probs=89.2
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---------------c-------------------eee--eEEEEEE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---------------L-------------------FSA--AFITQTV 83 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---------------T-------------------ig~--~~~~~~i 83 (373)
+....++++++|. |||||+++++...-... + .|. +.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 3345578999997 99999999986421100 0 111 1111222
Q ss_pred EECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160 84 CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM 163 (373)
Q Consensus 84 ~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
..+ ...+.|+||||+++|.......+..+|++++|+|+++...-+.. +.+..+..
T Consensus 100 ~~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~~~~~~---------------------- 154 (632)
T PRK05506 100 ATP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHSFIASL---------------------- 154 (632)
T ss_pred ccC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHHHHHHH----------------------
Confidence 233 34577999999988765445567899999999999764321111 11112222
Q ss_pred CCCCCeEEEEEeCCCCCCCCccc---CHHHHHHHHHHcCC---eEEEEcCCCCCCHHH
Q psy18160 164 APPNIVIALAGNKADLPTSRRCV---EYSEGEAYAEENGL---LFMETSAKTAMNVNE 215 (373)
Q Consensus 164 ~~~~~piilVgnK~Dl~~~~~~v---~~~e~~~~~~~~~~---~~~evSak~~~gI~~ 215 (373)
....|++|+.||+|+.+..... -.++..++.+..++ +++++||++|.|+++
T Consensus 155 -~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 155 -LGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred -hCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1235789999999986421111 11223344455554 589999999999974
No 274
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.08 E-value=1.2e-09 Score=110.68 Aligned_cols=149 Identities=16% Similarity=0.073 Sum_probs=103.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-ceee--eEEEEEEEECCEEEEEEEEeCCCcccc------cccchhhcc--C
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-LFSA--AFITQTVCLDDVTIRFEIWDTAGQERY------HTLAPMYYR--N 113 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~------~~l~~~~~~--~ 113 (373)
..++++|. |||||+|++++.+.... =.|+ +...-.+...++ .+++.|.||.-.. ....+.|+. .
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 35788887 99999999999876655 3333 333444445554 4789999995322 223444543 5
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
.|+++-|.|.++.+.-- ..--++.+ -+.|++++.|+.|..+. +-+. -+.++
T Consensus 82 ~D~ivnVvDAtnLeRnL---yltlQLlE------------------------~g~p~ilaLNm~D~A~~-~Gi~-ID~~~ 132 (653)
T COG0370 82 PDLIVNVVDATNLERNL---YLTLQLLE------------------------LGIPMILALNMIDEAKK-RGIR-IDIEK 132 (653)
T ss_pred CCEEEEEcccchHHHHH---HHHHHHHH------------------------cCCCeEEEeccHhhHHh-cCCc-ccHHH
Confidence 79999999999865311 12222333 36789999999998664 2232 24567
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+.+.+|+|++++||++|.|++++...+.+....+
T Consensus 133 L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 133 LSKLLGVPVVPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred HHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccc
Confidence 8889999999999999999999999988755543
No 275
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.08 E-value=1.1e-09 Score=99.47 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=94.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc-----cchhhccCC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT-----LAPMYYRNA 114 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~-----l~~~~~~~a 114 (373)
|++++|. ||||+.+-+..+-.... |+.++ ...+... ..+.+++||.||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve--~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE--KSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE--EEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce--EEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 5778886 99999988886643322 33333 2233323 345799999999975543 356678999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-cccCH----H
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-RCVEY----S 189 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-~~v~~----~ 189 (373)
+++|+|+|+.+.+-.+++..+..-+... . ...+++.+.+..+|+|+..+. +.... +
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l------------------~-~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~ 138 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEAL------------------R-QYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQ 138 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHH------------------H-HHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHH
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHH------------------H-HhCCCCeEEEEEeecccCCHHHHHHHHHHHHH
Confidence 9999999998555444444333322221 0 135789999999999986531 11111 1
Q ss_pred HHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 190 EGEAYAEENG---LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 190 e~~~~~~~~~---~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
...+.+...+ +.++.+|.-+ +.+.++|..++..+..
T Consensus 139 ~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 139 RIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp HHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred HHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 2233344555 7799999887 6899999999887763
No 276
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.08 E-value=8.6e-10 Score=89.88 Aligned_cols=110 Identities=20% Similarity=0.187 Sum_probs=79.5
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT 124 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~ 124 (373)
+++++|+ |||+|+.||....|... ++...+ +..+...+++.++++++||+.+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~------------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG------------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCccccCceehhh------------------------hhhccccccCCCCEEEEEEEcc
Confidence 7888887 99999999988877654 321110 3444566788999999999999
Q ss_pred CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160 125 NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME 204 (373)
Q Consensus 125 ~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e 204 (373)
++.+++.+ |...+.. ....++|.++++||.|+.+. +.+..+++. ++++
T Consensus 58 ~~~s~~~~--~~~~i~~---------------------~~k~dl~~~~~~nk~dl~~~-~~~~~~~~~--------~~~~ 105 (124)
T smart00010 58 DRDSADNK--NVPEVLV---------------------GNKSDLPILVGGNRDVLEEE-RQVATEEGL--------EFAE 105 (124)
T ss_pred CHHHHHHH--hHHHHHh---------------------cCCCCCcEEEEeechhhHhh-CcCCHHHHH--------HHHH
Confidence 99999776 7766654 23357899999999998543 234433333 3556
Q ss_pred EcCCCCCCHH
Q psy18160 205 TSAKTAMNVN 214 (373)
Q Consensus 205 vSak~~~gI~ 214 (373)
+|++++.|+.
T Consensus 106 ~s~~~~~~~~ 115 (124)
T smart00010 106 TSAKTPEEGE 115 (124)
T ss_pred HhCCCcchhh
Confidence 8999999984
No 277
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.07 E-value=7e-10 Score=103.67 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=80.9
Q ss_pred EEEEcC---ChhHHHHHhhhCc--C------c---------Cc--ceeeeEEE--EEEEECCEEEEEEEEeCCCcccccc
Q psy18160 50 QIWLKD---RVDCMTQIVINVV--F------Y---------PY--LFSAAFIT--QTVCLDDVTIRFEIWDTAGQERYHT 105 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~--~------~---------~~--Tig~~~~~--~~i~~~~~~v~l~i~Dt~G~e~~~~ 105 (373)
++++|. |||||+++++... . . +. ..|.+... ..+..+ ...+.+|||||+.+|..
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~~ 79 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFTI 79 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHHH
Confidence 567775 9999999997411 0 0 00 12222222 233333 46788999999988888
Q ss_pred cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185 (373)
Q Consensus 106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~ 185 (373)
.+..+++.+|++++|+|..+...-.. .+.+..+.. .++|++++.||+|+......
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~------------------------~~~p~ivviNK~D~~~a~~~ 134 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR------------------------YNVPRIAFVNKMDRTGADFF 134 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH------------------------cCCCEEEEEECCCCCCCCHH
Confidence 88889999999999999987532221 223333333 46799999999998653111
Q ss_pred cCHHHHHHHHHHcCC-eEEEEcCCCC
Q psy18160 186 VEYSEGEAYAEENGL-LFMETSAKTA 210 (373)
Q Consensus 186 v~~~e~~~~~~~~~~-~~~evSak~~ 210 (373)
...++.++......+ ..+++|+..+
T Consensus 135 ~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 135 RVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHHHhCCCceEEEeccccCCC
Confidence 112222222222212 3577887643
No 278
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.07 E-value=7.6e-10 Score=116.54 Aligned_cols=137 Identities=13% Similarity=0.020 Sum_probs=86.8
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcC--------c------C---c--ceeee--EEEEEEEECCEEEEEEEEeCC
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVF--------Y------P---Y--LFSAA--FITQTVCLDDVTIRFEIWDTA 98 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~--------~------~---~--Tig~~--~~~~~i~~~~~~v~l~i~Dt~ 98 (373)
+..+...++++|. |||||+++++...- . + . ..|.+ .....+.+++ ..+.+|||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTP 83 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTP 83 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECC
Confidence 3445567777776 99999999974210 0 0 0 11222 2223444444 678999999
Q ss_pred CcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160 99 GQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178 (373)
Q Consensus 99 G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D 178 (373)
|+.+|...+..+++.+|++++|+|+++....+... ++..+.. .++|+++++||+|
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~------------------------~~~p~ivviNK~D 138 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR------------------------YEVPRIAFVNKMD 138 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH------------------------cCCCEEEEEECCC
Confidence 99988888888999999999999998865544332 2233333 3679999999999
Q ss_pred CCCCCcccCHHH-HHHHHHHcCC----eEEEEcCCCC
Q psy18160 179 LPTSRRCVEYSE-GEAYAEENGL----LFMETSAKTA 210 (373)
Q Consensus 179 l~~~~~~v~~~e-~~~~~~~~~~----~~~evSak~~ 210 (373)
+.... .++ ..++...++. ..+++|+..+
T Consensus 139 ~~~~~----~~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 139 KTGAN----FLRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred CCCCC----HHHHHHHHHHHhCCCceeEEeccccCCC
Confidence 87531 222 2333333332 2466666655
No 279
>KOG1145|consensus
Probab=99.06 E-value=2.3e-09 Score=105.30 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=96.1
Q ss_pred ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH---
Q psy18160 56 RVDCMTQIVINVVFYPY-----LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ--- 126 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~--- 126 (373)
|||||+..|-+...... |.+.-- -.+.+ +| -.+.|.||||+.-|..|+..-.+-+|.+++|+.++|.
T Consensus 165 GKTTLLD~lRks~VAA~E~GGITQhIGA--F~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmp 240 (683)
T KOG1145|consen 165 GKTTLLDALRKSSVAAGEAGGITQHIGA--FTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMP 240 (683)
T ss_pred ChhhHHHHHhhCceehhhcCCccceece--EEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccH
Confidence 99999999998877665 333322 23333 44 4577899999999999999999999999999999884
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-------cC
Q psy18160 127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-------NG 199 (373)
Q Consensus 127 ~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-------~~ 199 (373)
.+.+.|. . ....++|++|..||+|.+.. +++...+-.-. +|
T Consensus 241 QT~EaIk-------h---------------------Ak~A~VpiVvAinKiDkp~a----~pekv~~eL~~~gi~~E~~G 288 (683)
T KOG1145|consen 241 QTLEAIK-------H---------------------AKSANVPIVVAINKIDKPGA----NPEKVKRELLSQGIVVEDLG 288 (683)
T ss_pred hHHHHHH-------H---------------------HHhcCCCEEEEEeccCCCCC----CHHHHHHHHHHcCccHHHcC
Confidence 3333332 1 12368999999999997653 44444333222 33
Q ss_pred --CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 200 --LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 200 --~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.+++++||++|+|++.|-+.++-.
T Consensus 289 GdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 289 GDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred CceeEEEeecccCCChHHHHHHHHHH
Confidence 468999999999999998886543
No 280
>KOG1489|consensus
Probab=99.06 E-value=2.4e-09 Score=98.94 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=99.0
Q ss_pred ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc----cchhh---ccCCcEEEEEEEC
Q psy18160 56 RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT----LAPMY---YRNAQAAIIVYDI 123 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~----l~~~~---~~~ad~iilv~D~ 123 (373)
|||||++.+...+.... |+..... .+.+++- ..+.+-|.||.-+-.. +-..| +..|+.++||+|+
T Consensus 208 GKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~ 284 (366)
T KOG1489|consen 208 GKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDL 284 (366)
T ss_pred cHHHHHHHhhccCCcccccceeeeccccc--eeecccc-ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEEC
Confidence 99999999998865443 4433332 4444443 3388999999644332 33334 4579999999999
Q ss_pred CCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 124 TNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 124 ~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
+.. ..++.+.....++..+. ....+.|.++|+||+|+++. ...-..++++.+.-
T Consensus 285 s~~~~~~p~~~~~lL~~ELe~ye-------------------k~L~~rp~liVaNKiD~~ea----e~~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 285 SGKQLRNPWQQLQLLIEELELYE-------------------KGLADRPALIVANKIDLPEA----EKNLLSSLAKRLQN 341 (366)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-------------------hhhccCceEEEEeccCchhH----HHHHHHHHHHHcCC
Confidence 988 77777776666665531 23457899999999998643 11223667777665
Q ss_pred e-EEEEcCCCCCCHHHHHHHHHH
Q psy18160 201 L-FMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 201 ~-~~evSak~~~gI~~lf~~L~~ 222 (373)
+ ++++||++++|++++.+.|-.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhh
Confidence 5 999999999999999887754
No 281
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.05 E-value=1.5e-09 Score=101.49 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=88.4
Q ss_pred EEEEcC---ChhHHHHHhhhCcCcCc---------------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc
Q psy18160 50 QIWLKD---RVDCMTQIVINVVFYPY---------------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT 105 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~~~~~~---------------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~ 105 (373)
++++|. |||||+++++...-... .+........+..+ .+.+.+|||+|+.+|..
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFVG 79 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHHH
Confidence 567776 99999999975321110 11111112233333 35688999999988877
Q ss_pred cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185 (373)
Q Consensus 106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~ 185 (373)
.+..+++.+|++++|+|.++........-| ..+.. .++|.++++||+|+...
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~------------------------~~~p~iivvNK~D~~~~--- 131 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE------------------------AGIPRIIFINKMDRERA--- 131 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH------------------------cCCCEEEEEECCccCCC---
Confidence 788889999999999999886544322222 22222 36799999999998653
Q ss_pred cCHH-HHHHHHHHcCCeE--EEEcCCCCCCHHHHHHHHH
Q psy18160 186 VEYS-EGEAYAEENGLLF--METSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 186 v~~~-e~~~~~~~~~~~~--~evSak~~~gI~~lf~~L~ 221 (373)
..+ ...++...++.++ +.+...++.++..+.+.+.
T Consensus 132 -~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~ 169 (268)
T cd04170 132 -DFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLT 169 (268)
T ss_pred -CHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEccc
Confidence 222 2334444455543 4455677777655544443
No 282
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.04 E-value=8.4e-10 Score=96.20 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=71.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchh---hccCCcEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPM---YYRNAQAAII 119 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~---~~~~ad~iil 119 (373)
.++++|. |||+|+.+|..+.+.+. ++.... ...+ +...-.+.++|+||+++.+..... +...+.++||
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 5677776 99999999999977765 332111 1122 223345789999999988764333 4789999999
Q ss_pred EEECCC-HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 120 VYDITN-QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 120 v~D~~~-~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
|+|.+. +..+.++.+++-.+... .......+|++|++||.|+...
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~------------------~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSD------------------TEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHH------------------HHCCTT--EEEEEEE-TTSTT-
T ss_pred EEeCccchhhHHHHHHHHHHHHHh------------------hhhccCCCCEEEEEeCcccccc
Confidence 999974 45666666666555441 0123467999999999999654
No 283
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.03 E-value=1.5e-08 Score=94.14 Aligned_cols=197 Identities=16% Similarity=0.083 Sum_probs=120.7
Q ss_pred hhhhhhhhhhhhhccCCCCcccccc----CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEE
Q psy18160 16 EYALTVRVLKLKTQIPKGNWFSMMS----GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTV 83 (373)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i 83 (373)
-.+++.+..++|.++......+--. .-.++....++++|- |||||++++++.+-... |.. ...-.+
T Consensus 28 ig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~--~VPG~l 105 (365)
T COG1163 28 IGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLE--PVPGML 105 (365)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecc--cccceE
Confidence 3477788877777765531111111 123445567888884 99999999998754433 222 122345
Q ss_pred EECCEEEEEEEEeCCCcccccc-------cchhhccCCcEEEEEEECCCHhh-HHHHHHHHHHHHhhCC---CCC-----
Q psy18160 84 CLDDVTIRFEIWDTAGQERYHT-------LAPMYYRNAQAAIIVYDITNQDT-FGRAKSWVKELQRMAP---PNI----- 147 (373)
Q Consensus 84 ~~~~~~v~l~i~Dt~G~e~~~~-------l~~~~~~~ad~iilv~D~~~~~S-f~~i~~~l~~i~~~~~---~~~----- 147 (373)
+++| ..+|+.|+||.-+-.+ ..-..+|+||++++|.|+....+ .+.+.+-+...--... .++
T Consensus 106 ~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk 183 (365)
T COG1163 106 EYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKK 183 (365)
T ss_pred eecC--ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEe
Confidence 5555 6789999998533222 23345789999999999987665 4444433332210000 000
Q ss_pred -------Cc------------------------------ccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 148 -------DT------------------------------FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 148 -------~~------------------------------~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
.. -....++++.+... ..-+|.++|.||.|+.. .++
T Consensus 184 ~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~------~e~ 256 (365)
T COG1163 184 ESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN-RVYKPALYVVNKIDLPG------LEE 256 (365)
T ss_pred ccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhc-ceeeeeEEEEecccccC------HHH
Confidence 00 01112222333222 23579999999999854 456
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
...+.+.. .++.+||+.+.|++++.+.|.+.+.
T Consensus 257 ~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 257 LERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred HHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 66666654 7899999999999999999988764
No 284
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.02 E-value=3.4e-09 Score=105.89 Aligned_cols=147 Identities=18% Similarity=0.109 Sum_probs=90.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC--c--------------------C-----cCc-----ceeeeEEEEEEEECCEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV--V--------------------F-----YPY-----LFSAAFITQTVCLDDVT 89 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~--~--------------------~-----~~~-----Tig~~~~~~~i~~~~~~ 89 (373)
...+.++++|. |||||+.+++.. . + .+. ..|.+.......+..+.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 44578889997 999999999751 0 0 011 11222222223334445
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hH---HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TF---GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM 163 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf---~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
..+.|+||||+++|.......+..+|++++|+|.++.. .| ....+.+..+..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---------------------- 142 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---------------------- 142 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----------------------
Confidence 67899999999998776667788999999999998642 11 111222222222
Q ss_pred CCCCCe-EEEEEeCCCCCCC----Cc-ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q psy18160 164 APPNIV-IALAGNKADLPTS----RR-CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNE 215 (373)
Q Consensus 164 ~~~~~p-iilVgnK~Dl~~~----~~-~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~ 215 (373)
.++| ++++.||+|.... .+ ..-.++..++....+ ++++++||.+|+|+.+
T Consensus 143 --~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 143 --LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred --cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 3445 7799999995321 01 011233444444443 5799999999999864
No 285
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.01 E-value=6.5e-09 Score=102.04 Aligned_cols=77 Identities=18% Similarity=0.096 Sum_probs=52.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEE-------------------ECC-EEEEEEEEeCCC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVC-------------------LDD-VTIRFEIWDTAG 99 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~-------------------~~~-~~v~l~i~Dt~G 99 (373)
++++++|. |||||+|++++..+... |+........+. .++ ..+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 46788886 99999999998876532 332222111110 111 236799999999
Q ss_pred c----ccccccchhh---ccCCcEEEEEEECC
Q psy18160 100 Q----ERYHTLAPMY---YRNAQAAIIVYDIT 124 (373)
Q Consensus 100 ~----e~~~~l~~~~---~~~ad~iilv~D~~ 124 (373)
. ++...+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 4445566666 88999999999997
No 286
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.01 E-value=6.7e-10 Score=95.14 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=55.4
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH-HH
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG-EA 193 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~-~~ 193 (373)
|.+++|+|+.++.+... .++.. .. ....+.|+++|.||+|+... . ...+. ..
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~---------------------~~~~~~p~IiVlNK~Dl~~~-~--~~~~~~~~ 53 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VL---------------------IKEKGKKLILVLNKADLVPK-E--VLRKWLAY 53 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HH---------------------HhcCCCCEEEEEechhcCCH-H--HHHHHHHH
Confidence 78999999988765432 22221 01 11256899999999998542 1 11111 12
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+.+..+..++.+||+++.|++++++.+.+...
T Consensus 54 ~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 54 LRHSYPTIPFKISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred HHhhCCceEEEEeccCCcChhhHHHHHHHHhH
Confidence 33334567899999999999999999877653
No 287
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.01 E-value=6.7e-09 Score=100.31 Aligned_cols=156 Identities=14% Similarity=0.133 Sum_probs=110.6
Q ss_pred CcEEEEEEcC-ChhHHHHHhhhC--cCcCc---------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc
Q psy18160 46 DCMAQIWLKD-RVDCMTQIVINV--VFYPY---------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA 107 (373)
Q Consensus 46 ~~i~ivvlG~-GKTsLl~rl~~~--~~~~~---------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~ 107 (373)
.-+.|+.-.+ |||||+..++.. .|... ..|.+...|...++-+.++++|.||+|+..|..-.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 3466777777 999999999853 23322 55666667776666666889999999999999999
Q ss_pred hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC
Q psy18160 108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187 (373)
Q Consensus 108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~ 187 (373)
...+.-.|++++++|+.+..=-+ -.-.+..... .+.+.|||.||.|.+..+...-
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~------------------------~gL~PIVVvNKiDrp~Arp~~V 140 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA------------------------LGLKPIVVINKIDRPDARPDEV 140 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH------------------------cCCCcEEEEeCCCCCCCCHHHH
Confidence 99999999999999998733111 0101122222 4667789999999987633333
Q ss_pred HHHHHHHHH-------HcCCeEEEEcCCCCC----------CHHHHHHHHHHHcch
Q psy18160 188 YSEGEAYAE-------ENGLLFMETSAKTAM----------NVNEIFVEIAKKLPK 226 (373)
Q Consensus 188 ~~e~~~~~~-------~~~~~~~evSak~~~----------gI~~lf~~L~~~i~~ 226 (373)
.++...+.- ++.+|++..|++.|. ++..||+.|++.+..
T Consensus 141 vd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 141 VDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 344444443 345789999998774 688899999888864
No 288
>KOG0083|consensus
Probab=98.99 E-value=2.6e-10 Score=92.15 Aligned_cols=54 Identities=31% Similarity=0.457 Sum_probs=48.9
Q ss_pred EEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 301 VLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 301 ~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+++|++++|||||+.||..+.|-. .+.+|+| +||..|.+.+|+++|+|||||.|
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvg--------id~rnkli~~~~~kvklqiwdta 55 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVG--------IDFRNKLIDMDDKKVKLQIWDTA 55 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeee--------eccccceeccCCcEEEEEEeecc
Confidence 368999999999999999999865 6899999 77778888899999999999987
No 289
>PRK13796 GTPase YqeH; Provisional
Probab=98.99 E-value=7.3e-10 Score=107.93 Aligned_cols=92 Identities=28% Similarity=0.366 Sum_probs=61.0
Q ss_pred cccccchhhccCCc-EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160 102 RYHTLAPMYYRNAQ-AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180 (373)
Q Consensus 102 ~~~~l~~~~~~~ad-~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 180 (373)
.|..+... +..++ .+++|+|+.|.. ..|...+.+ . ..+.|+++|+||+|+.
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~---------------------~-~~~kpviLViNK~DLl 109 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHR---------------------F-VGNNPVLLVGNKADLL 109 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHH---------------------H-hCCCCEEEEEEchhhC
Confidence 34443333 34455 999999997743 234444444 1 1367899999999996
Q ss_pred CCCcccCHHHHHH----HHHHcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 181 TSRRCVEYSEGEA----YAEENGL---LFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 181 ~~~~~v~~~e~~~----~~~~~~~---~~~evSak~~~gI~~lf~~L~~~ 223 (373)
. +.+..++..+ +++.+++ .++.+||+++.|++++++.|.+.
T Consensus 110 ~--~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 110 P--KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred C--CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5 2333444433 3556676 58999999999999999998653
No 290
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.98 E-value=2e-10 Score=101.18 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=53.6
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|+++||||+|+.||+.+.|...|.||+| .+|. +.+.+++..++|+|||+|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~--------~~~~-~~~~~~~~~~~l~iwDta 61 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF--------ENYT-ASFEIDTQRIELSLWDTS 61 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCcee--------eeeE-EEEEECCEEEEEEEEECC
Confidence 468999999999999999999999999999999999 6664 678899999999999997
No 291
>KOG0097|consensus
Probab=98.98 E-value=1.7e-10 Score=93.99 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=58.1
Q ss_pred cccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 292 ~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+....||.+++|+-|||||||+.+|....|..+...||| ++|....+.|.|++|+|||||.|
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtig--------vefgtriievsgqkiklqiwdta 68 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--------VEFGTRIIEVSGQKIKLQIWDTA 68 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccc--------eecceeEEEecCcEEEEEEeecc
Confidence 3445679999999999999999999999999999999999 88888888899999999999987
No 292
>KOG0081|consensus
Probab=98.97 E-value=1.7e-10 Score=95.87 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=55.7
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceee-e-CCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKN-R-LNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~-v-~~~~~~l~iw~~~ 362 (373)
.++.+|++.+|++|||||+++.||..+.|..++.+|+|+||+.|. +-|.+.-=. . .+++|.|||||.|
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKr-vvY~s~gp~g~gr~~rihLQlWDTA 75 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKR-VVYNSSGPGGGGRGQRIHLQLWDTA 75 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccce-EEEeccCCCCCCcceEEEEeeeccc
Confidence 356688899999999999999999999999999999998888888 434322211 1 2679999999997
No 293
>PRK12740 elongation factor G; Reviewed
Probab=98.97 E-value=4e-09 Score=110.94 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=67.9
Q ss_pred ChhHHHHHhhhCcC--------------cCc-------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCC
Q psy18160 56 RVDCMTQIVINVVF--------------YPY-------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNA 114 (373)
Q Consensus 56 GKTsLl~rl~~~~~--------------~~~-------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a 114 (373)
|||||+++++...- ... .+........+.++ .+.+.+|||+|+.+|...+..+++.+
T Consensus 7 GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~~~l~~a 84 (668)
T PRK12740 7 GKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVERALRVL 84 (668)
T ss_pred cHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHHHHHHHh
Confidence 99999999954211 000 11122222334444 46789999999988877788889999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
|++++|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 85 D~vllvvd~~~~~~~~~~~~~-~~~~~------------------------~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 85 DGAVVVVCAVGGVEPQTETVW-RQAEK------------------------YGVPRIIFVNKMDRAG 126 (668)
T ss_pred CeEEEEEeCCCCcCHHHHHHH-HHHHH------------------------cCCCEEEEEECCCCCC
Confidence 999999999887655543323 23322 3679999999999864
No 294
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.97 E-value=2.3e-10 Score=100.78 Aligned_cols=57 Identities=28% Similarity=0.483 Sum_probs=53.6
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+.+||||+|+.||+.+.|...|.||+| .+|..+.+.++|..+.|+|||++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g--------~~~~~~~i~~~~~~~~l~iwDt~ 57 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLG--------VNFMEKTISIRGTEITFSIWDLG 57 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999999999999999 78877788899999999999987
No 295
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.97 E-value=3.1e-10 Score=103.60 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=54.5
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|+++||||+|+.||+.+.|...|.||+| .+|. +.+.+++..+.|+|||++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~--------~~~~-~~i~~~~~~v~l~iwDTa 69 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF--------ENYT-AGLETEEQRVELSLWDTS 69 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCcee--------eeeE-EEEEECCEEEEEEEEeCC
Confidence 34578999999999999999999999999999999999 6774 567899999999999997
No 296
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.96 E-value=2.9e-09 Score=112.48 Aligned_cols=111 Identities=14% Similarity=0.028 Sum_probs=78.1
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhC---------------cCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINV---------------VFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQE 101 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~---------------~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e 101 (373)
...+++++|. |||||+++|+.. .+.+. |+...+....+.+++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3457788886 999999999752 22221 55544444444567778899999999999
Q ss_pred cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
+|.......++.+|++++|+|+.+....+...-| ..+.. .+.|+++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~------------------------~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK------------------------ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH------------------------cCCCEEEEEEChhccc
Confidence 9988888899999999999999774322221112 22222 3567889999999854
No 297
>KOG0393|consensus
Probab=98.95 E-value=7.6e-10 Score=97.07 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=53.1
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+..|..+.|.+.|.||++ .+| +..+.|| |+.|.|.|||.|
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF--------dny-s~~v~V~dg~~v~L~LwDTA 61 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF--------DNY-SANVTVDDGKPVELGLWDTA 61 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE--------ccc-eEEEEecCCCEEEEeeeecC
Confidence 58999999999999999999999999999999998 566 4889995 999999999998
No 298
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.93 E-value=4e-10 Score=98.82 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=52.4
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||+|+.+|+.+.|...|.||+| .+|. +.+.+++..+.|+|||++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~iwDt~ 57 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF--------ENYT-ASFEIDEQRIELSLWDTS 57 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE--------EEEE-EEEEECCEEEEEEEEECC
Confidence 7999999999999999999999999999999999 6774 778899999999999997
No 299
>KOG0091|consensus
Probab=98.93 E-value=1.5e-10 Score=96.69 Aligned_cols=59 Identities=31% Similarity=0.555 Sum_probs=53.4
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceee-eCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKN-RLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~-v~~~~~~l~iw~~~ 362 (373)
+++++++||++.||||||+.+|..+.|.+--+||+| +||....+. -+|..|+|||||.|
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvg--------vdffarlie~~pg~riklqlwdta 66 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVG--------VDFFARLIELRPGYRIKLQLWDTA 66 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccc--------hHHHHHHHhcCCCcEEEEEEeecc
Confidence 578999999999999999999999999999999999 777766665 46999999999998
No 300
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.92 E-value=4e-10 Score=100.84 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=52.7
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.++++|+.+||||||+.||+.+.|...|.+|+| .+|..+.+.++|+.+.|+|||++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~--------~~~~~~~i~~~~~~v~l~iwDta 57 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVG--------VDFKIKTVELRGKKIRLQIWDTA 57 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcce--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 579999999999999999999999999999999 88877888899999999999997
No 301
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.90 E-value=5.8e-10 Score=97.65 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=51.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||+|+.||+.+.|...|.||+| .+|. +.+.++|..++|+|||++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~--------~~~~-~~~~~~~~~v~l~i~Dt~ 57 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------DNFS-ANVSVDGNTVNLGLWDTA 57 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcce--------eeeE-EEEEECCEEEEEEEEECC
Confidence 6899999999999999999999999999999999 6664 667789999999999987
No 302
>PRK12739 elongation factor G; Reviewed
Probab=98.90 E-value=1.8e-08 Score=106.20 Aligned_cols=109 Identities=13% Similarity=0.039 Sum_probs=73.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhC-----c---CcC------------c-ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINV-----V---FYP------------Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQE 101 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~-----~---~~~------------~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e 101 (373)
....++++|. |||||+++++.. . ... . .+..+.....+.+++ ..+.++||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHH
Confidence 4556777776 999999999742 1 010 0 122222233444544 568899999998
Q ss_pred cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
.|...+...++.+|++++|+|..+...-... ..+..+.. .++|++++.||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~------------------------~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK------------------------YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH------------------------cCCCEEEEEECCCCCC
Confidence 8877788889999999999999876433222 22233333 4678999999999864
No 303
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.90 E-value=2.7e-08 Score=80.62 Aligned_cols=74 Identities=9% Similarity=0.012 Sum_probs=50.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc---------cchhh
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT---------LAPMY 110 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~---------l~~~~ 110 (373)
+++++|. |||||+|++++...... |... ....+.+++..+ .++||+|...-.. .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~--~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP--VYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE--EEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee--eeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 5788887 99999999998643222 3333 234556677664 6999999642111 12223
Q ss_pred ccCCcEEEEEEECCCH
Q psy18160 111 YRNAQAAIIVYDITNQ 126 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~ 126 (373)
+..+|++++|+|.+++
T Consensus 77 ~~~~d~ii~vv~~~~~ 92 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNP 92 (116)
T ss_dssp HCTESEEEEEEETTSH
T ss_pred HHHCCEEEEEEECCCC
Confidence 4799999999998774
No 304
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.89 E-value=4.4e-08 Score=91.37 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=94.0
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCc-c----cccccchh---hcc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQ-E----RYHTLAPM---YYR 112 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-e----~~~~l~~~---~~~ 112 (373)
-+++-|- |||||++.+++.+.... |-++... .+ +.+..++|++||||. + +.+.+=.+ .++
T Consensus 170 TivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred eEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--ee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 4444443 99999999999876554 3333322 22 224457899999995 1 11111111 122
Q ss_pred -CCcEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 113 -NAQAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 113 -~ad~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
=+++++|+||.+... +.+.-...+.++.. ... .|+++|.||.|+.+. ...+
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~---------------------~f~--~p~v~V~nK~D~~~~---e~~~ 299 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKE---------------------LFK--APIVVVINKIDIADE---EKLE 299 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHH---------------------hcC--CCeEEEEecccccch---hHHH
Confidence 368999999998754 56666677777766 222 799999999998754 2233
Q ss_pred HHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 190 EGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 190 e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++......-+ .....+++..+.+++.+-..+.....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 300 EIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred HHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhh
Confidence 4433333334 44778899999999988877766543
No 305
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.89 E-value=7.9e-10 Score=97.95 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=54.8
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|+.+||||+|+.+|..+.|...|.||+| .+|..+.+.+++..++|+|||++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~--------~~~~~~~i~~~~~~~~l~iwDt~ 63 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMG--------IDYKTTTILLDGRRVKLQLWDTS 63 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcce--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 458999999999999999999999999999999999 77777788899999999999997
No 306
>KOG1191|consensus
Probab=98.89 E-value=4e-09 Score=102.67 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=103.9
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc-cccc--------chhhccC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER-YHTL--------APMYYRN 113 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-~~~l--------~~~~~~~ 113 (373)
+.++++|. |||||+|.+.+.+.... -.|.+....+..++-+.+.+.+.||+|.-+ -... ...-++.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ 348 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER 348 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh
Confidence 78999997 99999999999988877 334333333333333335577889999644 1111 2234678
Q ss_pred CcEEEEEEEC--CCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 114 AQAAIIVYDI--TNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 114 ad~iilv~D~--~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
||.+++|+|+ ++-++-..+.+.+....... .... +.....|++++.||.|+...-+......
T Consensus 349 advi~~vvda~~~~t~sd~~i~~~l~~~~~g~------~~~~---------~~~~~~~~i~~~nk~D~~s~~~~~~~~~- 412 (531)
T KOG1191|consen 349 ADVILLVVDAEESDTESDLKIARILETEGVGL------VVIV---------NKMEKQRIILVANKSDLVSKIPEMTKIP- 412 (531)
T ss_pred cCEEEEEecccccccccchHHHHHHHHhccce------EEEe---------ccccccceEEEechhhccCccccccCCc-
Confidence 9999999999 44444445555555443310 0011 1224578999999999976422111110
Q ss_pred HHHHHHc---CCe-EEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 192 EAYAEEN---GLL-FMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 192 ~~~~~~~---~~~-~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
..+.... .++ ..++|+++++|+++|...|.+.+...-.
T Consensus 413 ~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 413 VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 0111111 133 4569999999999999999988875544
No 307
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.89 E-value=6.7e-10 Score=100.79 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=51.8
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||+|+.+|..+.|.+.|.||++ .+|. ..+.++++.+.|+|||++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~--------~~~~-~~~~~~~~~v~L~iwDt~ 57 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVF--------ENYT-ASFEIDKRRIELNMWDTS 57 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccc--------cceE-EEEEECCEEEEEEEEeCC
Confidence 7999999999999999999999999999999999 6664 677889999999999986
No 308
>PRK00007 elongation factor G; Reviewed
Probab=98.88 E-value=1.6e-08 Score=106.45 Aligned_cols=112 Identities=14% Similarity=0.065 Sum_probs=73.0
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhh--Cc------Cc------Cc-----c--eeeeEEEEEEEECCEEEEEEEEeCC
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVIN--VV------FY------PY-----L--FSAAFITQTVCLDDVTIRFEIWDTA 98 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~--~~------~~------~~-----T--ig~~~~~~~i~~~~~~v~l~i~Dt~ 98 (373)
+.++...++++|. |||||+++++. +. .. +. . +..+.....+.+++ ..+.+.|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence 3445667777776 99999999973 11 11 00 1 22222223344444 568899999
Q ss_pred CcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160 99 GQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178 (373)
Q Consensus 99 G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D 178 (373)
|+..|.......++.+|++++|+|.......+... .+..+.. .++|++++.||+|
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~------------------------~~~p~iv~vNK~D 138 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK------------------------YKVPRIAFVNKMD 138 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH------------------------cCCCEEEEEECCC
Confidence 99887666666788999999999987664433322 2233333 3578899999999
Q ss_pred CCC
Q psy18160 179 LPT 181 (373)
Q Consensus 179 l~~ 181 (373)
+..
T Consensus 139 ~~~ 141 (693)
T PRK00007 139 RTG 141 (693)
T ss_pred CCC
Confidence 864
No 309
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.88 E-value=8.1e-10 Score=97.94 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=52.1
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|+.+||||+|+.||+.+.|.+.|.||+| .+|. +.+.++++.+.|+|||++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 59 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVF--------DNYS-AQTAVDGRTVSLNLWDTA 59 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceE--------eeeE-EEEEECCEEEEEEEEECC
Confidence 38999999999999999999999999999999999 6664 567789999999999997
No 310
>KOG1707|consensus
Probab=98.84 E-value=5.8e-08 Score=96.35 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=112.6
Q ss_pred cEEEEEEcC----ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 47 CMAQIWLKD----RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 47 ~i~ivvlG~----GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
.++.+++.| |||.|++.|+++.+... +....+....+.+.|..-.+.+-|.+-. ....+...- ..||.+.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 345555544 99999999999888766 6666677777777777777888887754 333333333 67999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
+||.+++.||+.+.+.++.... ...+|+++|++|+|+.+......... .+++++++
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~-----------------------~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~ 557 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFD-----------------------LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLG 557 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhh-----------------------ccCCceEEEeeccccchhhhccCCCh-HHHHHhcC
Confidence 9999999999988766554433 26899999999999977533344444 78999999
Q ss_pred Ce-EEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 200 LL-FMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 200 ~~-~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++ ...+|.+.... .++|..|+....
T Consensus 558 i~~P~~~S~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 558 LPPPIHISSKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred CCCCeeeccCCCCC-chHHHHHHHhhh
Confidence 85 57788885334 899999987765
No 311
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.84 E-value=1.3e-09 Score=95.19 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=51.4
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||+|+.+|+.+.|...|.||+| .+|. +.+.+++.++.|+|||++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 57 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF--------DNYA-VTVMIGGEPYTLGLFDTA 57 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------eeeE-EEEEECCEEEEEEEEECC
Confidence 6899999999999999999999999999999999 6664 567789999999999997
No 312
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.83 E-value=1.4e-09 Score=94.49 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=52.6
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|++++|||+|++||+.+.|...|.||+| .+|..+.+.++|..+.++|||++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~ 57 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG--------VDFEMERFEILGVPFSLQLWDTA 57 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 789999999999999999999999999999999 78877788889999999999986
No 313
>KOG0088|consensus
Probab=98.82 E-value=4.3e-10 Score=93.46 Aligned_cols=61 Identities=36% Similarity=0.469 Sum_probs=57.7
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+||++++|++.||||+|+-||+.+.|+..+.+|+- .+|..+++.|+|....|+|||.|
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQ--------ASF~~kk~n~ed~ra~L~IWDTA 70 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQ--------ASFQNKKVNVEDCRADLHIWDTA 70 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHH--------HHHhhcccccccceeeeeeeecc
Confidence 45789999999999999999999999999999999999 78888999999999999999998
No 314
>PRK01889 GTPase RsgA; Reviewed
Probab=98.81 E-value=7.3e-09 Score=100.58 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=61.9
Q ss_pred ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 111 YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
..++|.+++|+++..+-+...+++++..+.. .++|.+||.||+||.+. . .+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~------------------------~~i~piIVLNK~DL~~~-~---~~~ 161 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE------------------------SGAEPVIVLTKADLCED-A---EEK 161 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH------------------------cCCCEEEEEEChhcCCC-H---HHH
Confidence 5899999999999765666778888887766 46778999999999653 1 111
Q ss_pred HHHHHH-HcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160 191 GEAYAE-ENGLLFMETSAKTAMNVNEIFVEI 220 (373)
Q Consensus 191 ~~~~~~-~~~~~~~evSak~~~gI~~lf~~L 220 (373)
...+.. ..+++++.+|++++.|++++...|
T Consensus 162 ~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 162 IAEVEALAPGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHHhCCCCcEEEEECCCCccHHHHHHHh
Confidence 122222 347899999999999999988776
No 315
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.80 E-value=2.8e-08 Score=79.76 Aligned_cols=132 Identities=18% Similarity=0.097 Sum_probs=91.2
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc----chhhccCCcEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL----APMYYRNAQAAIIV 120 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l----~~~~~~~ad~iilv 120 (373)
+++++|. |||||++.+-+...... |..++| +++. .+||+|.-.-... ......++|.+++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~-------~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v 71 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEF-------NDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIYV 71 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceeec-------cCcc----ccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence 5677776 99999999988765554 544443 3321 4699984211111 22335689999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
-.+++++|--.- .+ ......|+|=|.+|.||.++ .+.+..++|..+-|.
T Consensus 72 ~~and~~s~f~p-----~f-----------------------~~~~~k~vIgvVTK~DLaed---~dI~~~~~~L~eaGa 120 (148)
T COG4917 72 HAANDPESRFPP-----GF-----------------------LDIGVKKVIGVVTKADLAED---ADISLVKRWLREAGA 120 (148)
T ss_pred ecccCccccCCc-----cc-----------------------ccccccceEEEEecccccch---HhHHHHHHHHHHcCC
Confidence 999988752110 00 11234568999999999864 455667778887775
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHH
Q psy18160 201 -LFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 201 -~~~evSak~~~gI~~lf~~L~~ 222 (373)
++|++|+.++.||++++..|..
T Consensus 121 ~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 121 EPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cceEEEeccCcccHHHHHHHHHh
Confidence 6999999999999999998864
No 316
>KOG0705|consensus
Probab=98.79 E-value=2e-08 Score=98.54 Aligned_cols=156 Identities=14% Similarity=0.263 Sum_probs=121.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..+++.++|. |||+|++||+.+.|... +.|..| .+.+.+++....+.+.|.+|.. ...|...+|++|||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 4578899998 99999999999999988 666665 5777888888899999998832 35677889999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-CcccCHHHHHHHHHH-c
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRCVEYSEGEAYAEE-N 198 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~v~~~e~~~~~~~-~ 198 (373)
|.+.+..+|+.+..+...+..+ .....+|+++++++.-.... .+.+...++.+++.+ .
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~--------------------r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~k 162 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSY--------------------RNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMK 162 (749)
T ss_pred EEeccccCHHHHHHHHhhcccc--------------------cccccchHHhhcCcchhhcccccccchHHHHHHHHhcC
Confidence 9999999999998776665441 23467899999998654322 244555555555444 4
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.+.||+++|..|.+++..|+.++..+...
T Consensus 163 rcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 163 RCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred ccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 57899999999999999999988776544
No 317
>PLN03110 Rab GTPase; Provisional
Probab=98.77 E-value=4.1e-09 Score=95.36 Aligned_cols=60 Identities=33% Similarity=0.467 Sum_probs=55.4
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|+++||||+|+.+|..+.|...|.||+| .+|..+.+.+++..+.++|||++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g--------~~~~~~~v~~~~~~~~l~l~Dt~ 69 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIG--------VEFATRTLQVEGKTVKAQIWDTA 69 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------EEEEEEEEEECCEEEEEEEEECC
Confidence 3568999999999999999999999999999999999 88877888899999999999986
No 318
>KOG0090|consensus
Probab=98.77 E-value=3.2e-08 Score=86.74 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=96.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc---CCcEEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR---NAQAAIIV 120 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~---~ad~iilv 120 (373)
.++++|- |||+|+-++..+.+... ++... .....++... +.++|.||+++.+.-...++. .+-+++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 4555554 99999999999977765 33222 2233344333 789999999988776667776 79999999
Q ss_pred EECCC-HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc-----CHHHHHHH
Q psy18160 121 YDITN-QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV-----EYSEGEAY 194 (373)
Q Consensus 121 ~D~~~-~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v-----~~~e~~~~ 194 (373)
+|..- .....++.+++-.+.... +-....+|++|+.||.|+....... -..|+..+
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~------------------~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDS------------------RVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhh------------------ccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHH
Confidence 99753 344555555555544310 0123578999999999986541100 00011000
Q ss_pred ------------------------------H--HHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 195 ------------------------------A--EENGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 195 ------------------------------~--~~~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
. ....+.|.+.|++++ +++++-+||.+.
T Consensus 178 r~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 178 RESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 011245889999988 899999998764
No 319
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.76 E-value=3.3e-09 Score=91.19 Aligned_cols=57 Identities=37% Similarity=0.568 Sum_probs=52.8
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+.+|+.+.|...|.||+| .++..+.+.+++..+.++|||++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~ 57 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG--------VDFKMKTIEVDGIKVRIQIWDTA 57 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 4899999999999999999999999999999999 77777788889999999999987
No 320
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.76 E-value=3e-09 Score=94.95 Aligned_cols=57 Identities=28% Similarity=0.523 Sum_probs=52.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|+.+.|...|.||+| .+|..+.+.++ +..+.|+|||++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~d~~~~~v~~~~~~~~~l~l~Dt~ 58 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIG--------VDFALKVIEWDPNTVVRLQLWDIA 58 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------EEEEEEEEEECCCCEEEEEEEECC
Confidence 5899999999999999999999999999999999 77776777888 899999999987
No 321
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.76 E-value=3.7e-09 Score=91.15 Aligned_cols=58 Identities=22% Similarity=0.387 Sum_probs=53.5
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++|..+.|...|.+|+| .+|..+.+.+++..++++|||++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~ 59 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--------VEFGTRIIEVNGQKIKLQIWDTA 59 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence 37999999999999999999999999999999999 77776777889999999999986
No 322
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.76 E-value=3.3e-09 Score=90.92 Aligned_cols=58 Identities=29% Similarity=0.484 Sum_probs=53.4
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+|++++|++++|||+|+++++.+.|...|.||+| .++..+.+.+++..+.++|||++-
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~G 58 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG--------IDYGVKKVSVRNKEVRVNFFDLSG 58 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------eeEEEEEEEECCeEEEEEEEECCc
Confidence 4899999999999999999999999999999999 777777888899999999999863
No 323
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.75 E-value=3.9e-09 Score=91.64 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=53.4
Q ss_pred cceEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.-+|++++|++|||||+|++||+.+.|. ..|.||+| .+|..+.+.++|..+.+.+||++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~--------~~~~~~~~~~~~~~~~l~~~d~~ 62 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIK--------PRYAVNTVEVYGQEKYLILREVG 62 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccC--------cceEEEEEEECCeEEEEEEEecC
Confidence 3589999999999999999999999999 89999999 67766778889999999999976
No 324
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.74 E-value=4.3e-09 Score=90.67 Aligned_cols=57 Identities=32% Similarity=0.533 Sum_probs=53.0
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|++++..+.|...|.||+| .+|..+.+.+++..+.++|||++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 58 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--------IDFKVKTVFRNDKRVKLQIWDTA 58 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECC
Confidence 7999999999999999999999999999999999 77777778888999999999987
No 325
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.74 E-value=9.7e-08 Score=89.50 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=94.4
Q ss_pred ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc----cccchhh---ccCCcEEEEEEEC
Q psy18160 56 RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY----HTLAPMY---YRNAQAAIIVYDI 123 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~----~~l~~~~---~~~ad~iilv~D~ 123 (373)
|||||++.+...+.... |+-..... +.++ ..-.|.+-|.||.-+- .-+-..| +..+.+++.|+|+
T Consensus 171 GKSTlls~vS~AkPKIadYpFTTL~PnLGv--V~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~ 247 (369)
T COG0536 171 GKSTLLSAVSAAKPKIADYPFTTLVPNLGV--VRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDL 247 (369)
T ss_pred cHHHHHHHHhhcCCcccCCccccccCcccE--EEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEec
Confidence 99999999998765543 44444332 2332 2234778899986432 2234444 4578999999999
Q ss_pred CCHh---hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH----HHH
Q psy18160 124 TNQD---TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA----YAE 196 (373)
Q Consensus 124 ~~~~---Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~----~~~ 196 (373)
+..+ ..++...+..++..+. ....+.|.+||+||+|+... .++.+. +.+
T Consensus 248 s~~~~~dp~~~~~~i~~EL~~Y~-------------------~~L~~K~~ivv~NKiD~~~~-----~e~~~~~~~~l~~ 303 (369)
T COG0536 248 SPIDGRDPIEDYQTIRNELEKYS-------------------PKLAEKPRIVVLNKIDLPLD-----EEELEELKKALAE 303 (369)
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-------------------HHhccCceEEEEeccCCCcC-----HHHHHHHHHHHHH
Confidence 8654 3555555556665531 23357899999999996543 233333 333
Q ss_pred HcCCeEEE-EcCCCCCCHHHHHHHHHHHcchh
Q psy18160 197 ENGLLFME-TSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 197 ~~~~~~~e-vSak~~~gI~~lf~~L~~~i~~~ 227 (373)
..+...+. +||.+++|++++...+.+.+.+.
T Consensus 304 ~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 304 ALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred hcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 44443222 99999999999999988877654
No 326
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.74 E-value=3.5e-09 Score=90.65 Aligned_cols=56 Identities=32% Similarity=0.412 Sum_probs=53.0
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|+.++|||+|+.+|..+.|.+.|.||+| .++..+.+.+++.++.|+|||++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~ 56 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--------IDSYSKEVSIDGKPVNLEIWDTS 56 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--------EEEEEEEEEETTEEEEEEEEEET
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccc--------ccccccccccccccccccccccc
Confidence 789999999999999999999999999999999 78888889999999999999975
No 327
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.73 E-value=3.9e-09 Score=94.40 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=49.4
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-----CCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-----LNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-----~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||||+++|+.+.|.+.|.||+| .++..+.+.+ +++.+.|+|||++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig--------~~~~~k~~~~~~~~~~~~~~~l~IwDta 62 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVG--------CSVDVKHHTYKEGTPEEKTFFVELWDVG 62 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCccee--------eeEEEEEEEEcCCCCCCcEEEEEEEecC
Confidence 4899999999999999999999999999999999 5555455554 3689999999987
No 328
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.73 E-value=5.1e-09 Score=90.40 Aligned_cols=59 Identities=36% Similarity=0.517 Sum_probs=53.6
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++|..+.|...|.||+| .+|..+.+.+++..+.++|||++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~D~~ 60 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG--------IDFKIRTIELDGKKIKLQIWDTA 60 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCcc--------ceEEEEEEEECCEEEEEEEEeCC
Confidence 358999999999999999999999999999999999 67766677788999999999986
No 329
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.72 E-value=7.1e-09 Score=93.99 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=53.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++|||||+|+.+|+.+.|...|.||+| .++....+.+++..++++|||++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig--------~~~~~~~~~~~~~~~~l~i~Dt~ 70 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG--------VEVHPLDFFTNCGKIRFYCWDTA 70 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccc--------eeEEEEEEEECCeEEEEEEEECC
Confidence 4569999999999999999999999999999999999 66665666678889999999987
No 330
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.72 E-value=1.3e-07 Score=84.14 Aligned_cols=153 Identities=10% Similarity=0.082 Sum_probs=90.6
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cc---
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LA--- 107 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~--- 107 (373)
+++++|. |||||+|.+++.+.... |.... .....+++. .+.++||||...... +.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~--~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQ--KESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccc--eeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 5788887 99999999998764432 22222 223344553 578999999654321 11
Q ss_pred hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc-
Q psy18160 108 PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV- 186 (373)
Q Consensus 108 ~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v- 186 (373)
.....++|++++|.|+.+ .+-++ ...++.+.+... ...-.++++|.|+.|........
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg-------------------~~~~~~~ivv~T~~d~l~~~~~~~ 136 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFG-------------------EKVLDHTIVLFTRGDDLEGGTLED 136 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhC-------------------hHhHhcEEEEEECccccCCCcHHH
Confidence 112457899999999976 32222 122333333100 00124788999999965431100
Q ss_pred ----CHHHHHHHHHHcCCeEEEEc-----CCCCCCHHHHHHHHHHHcch
Q psy18160 187 ----EYSEGEAYAEENGLLFMETS-----AKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 187 ----~~~e~~~~~~~~~~~~~evS-----ak~~~gI~~lf~~L~~~i~~ 226 (373)
.....+.+.+..+-.|+..+ +..+.++++|++.+.+.+..
T Consensus 137 ~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 137 YLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 11344555666666665555 44567899999888877764
No 331
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.71 E-value=5.5e-09 Score=91.00 Aligned_cols=56 Identities=27% Similarity=0.514 Sum_probs=51.3
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||+|+.+|..+.|...|.||+| .+|. +.+.++|.++.++|||++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 58 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE--------DAYK-QQARIDNEPALLDILDTA 58 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc--------ceEE-EEEEECCEEEEEEEEeCC
Confidence 7999999999999999999999999999999999 5664 667889999999999986
No 332
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.71 E-value=2e-07 Score=87.48 Aligned_cols=142 Identities=20% Similarity=0.153 Sum_probs=89.3
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc----------------------------------ceeeeEEEEEEEECCE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----------------------------------LFSAAFITQTVCLDDV 88 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----------------------------------Tig~~~~~~~i~~~~~ 88 (373)
...+.+..|. |||||+-|++.+.-... ..|.+.......+.-.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4467777786 99999999986421110 1111111111122234
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHH--HHHHHHHhhCCCCCCcccccchhHHhhhhcCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK--SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (373)
+-+|.+-||||+|.|..-.-.-...||++|+++|+...- .+.-. .++..+. .
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL-------------------------G 138 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL-------------------------G 138 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh-------------------------C
Confidence 456889999999999765555577899999999984321 11111 1222221 2
Q ss_pred CCeEEEEEeCCCCCCCCcccCH----HHHHHHHHHcCC---eEEEEcCCCCCCHH
Q psy18160 167 NIVIALAGNKADLPTSRRCVEY----SEGEAYAEENGL---LFMETSAKTAMNVN 214 (373)
Q Consensus 167 ~~piilVgnK~Dl~~~~~~v~~----~e~~~~~~~~~~---~~~evSak~~~gI~ 214 (373)
-..++|..||+||.+- .+... ++...|+.++++ .++++||..|+||-
T Consensus 139 IrhvvvAVNKmDLvdy-~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 139 IRHVVVAVNKMDLVDY-SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred CcEEEEEEeeeccccc-CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3468999999999764 22222 334568888875 59999999999985
No 333
>PLN00023 GTP-binding protein; Provisional
Probab=98.70 E-value=6.6e-09 Score=98.28 Aligned_cols=60 Identities=27% Similarity=0.298 Sum_probs=50.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-------------CeEEEEEehhh
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-------------NNNVPITFVWV 361 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-------------~~~~~l~iw~~ 361 (373)
...+|++++|+.+||||+|+.+|+.+.|...|.|||| .+|..+.+.++ ++.+.++|||+
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG--------~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDT 90 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIG--------CTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDV 90 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCcee--------eeEEEEEEEECCcccccccccccCCceEEEEEEEC
Confidence 3468999999999999999999999999999999999 55544555543 46899999999
Q ss_pred H
Q psy18160 362 I 362 (373)
Q Consensus 362 ~ 362 (373)
|
T Consensus 91 A 91 (334)
T PLN00023 91 S 91 (334)
T ss_pred C
Confidence 7
No 334
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.69 E-value=8e-08 Score=87.67 Aligned_cols=158 Identities=9% Similarity=0.101 Sum_probs=101.6
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEE-EEECCEEEEEEEEeCCCccc-------ccccchh
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQT-VCLDDVTIRFEIWDTAGQER-------YHTLAPM 109 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~-i~~~~~~v~l~i~Dt~G~e~-------~~~l~~~ 109 (373)
.+..+.+++.|. |||||+|+++.++..+. ..|.+..... ..+++ -.+.|||++|-++ |+.+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 344577778886 99999999997766655 2232221111 22344 3488999999765 6667777
Q ss_pred hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC------
Q psy18160 110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR------ 183 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~------ 183 (373)
++...|.++.+.+..|+.=--+. +++..+.. ..-+.+++++.|.+|....-
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~----------------------~~~~~~~i~~VtQ~D~a~p~~~W~~~ 170 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVII----------------------LGLDKRVLFVVTQADRAEPGREWDSA 170 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHH----------------------hccCceeEEEEehhhhhccccccccc
Confidence 88899999999999887622222 23333332 12347999999999975431
Q ss_pred cccCHHHHHHHH--------HHc--CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 184 RCVEYSEGEAYA--------EEN--GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 184 ~~v~~~e~~~~~--------~~~--~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
...+...++++. +.. --|++.+|...+.|++++...++..++.
T Consensus 171 ~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 171 GHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 001111111111 111 1368888899999999999999998873
No 335
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.69 E-value=8e-09 Score=92.16 Aligned_cols=59 Identities=34% Similarity=0.513 Sum_probs=54.0
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++|+|||+|+++|..+.|...|.||+| .++....+.++|..+.++|||++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~D~~ 63 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--------VDFKIRTVEINGERVKLQIWDTA 63 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccc--------ceeEEEEEEECCEEEEEEEEeCC
Confidence 458999999999999999999999999999999999 77776777888999999999987
No 336
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.69 E-value=8e-09 Score=90.14 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=50.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||+|+.||+.+.|...|.||++ ..| .+.+.+++..+.|+|||++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~ 57 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNY-SANVMVDGKPVNLGLWDTA 57 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce--------eee-EEEEEECCEEEEEEEEECC
Confidence 6899999999999999999999999999999998 444 3567789999999999987
No 337
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.68 E-value=7.5e-09 Score=93.51 Aligned_cols=57 Identities=33% Similarity=0.466 Sum_probs=51.8
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCC-eEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLN-NNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~-~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|..+.|...|.||+| .|+..+.+.+++ ..+.++|||++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~--------~d~~~~~i~~~~~~~~~~~i~Dt~ 58 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIG--------LDFFSKRVTLPGNLNVTLQVWDIG 58 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--------EEEEEEEEEeCCCCEEEEEEEECC
Confidence 5899999999999999999999999999999999 787777788865 68999999986
No 338
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.68 E-value=7e-09 Score=88.69 Aligned_cols=56 Identities=32% Similarity=0.457 Sum_probs=50.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++++.+.|...|.||++ ..+ .+.+.+++..+.++|||++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~ 57 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--------DSY-RKQIEVDGQQCMLEILDTA 57 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh--------hhE-EEEEEECCEEEEEEEEECC
Confidence 7999999999999999999999999999999998 334 3677889999999999996
No 339
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.66 E-value=1.1e-08 Score=88.31 Aligned_cols=59 Identities=31% Similarity=0.387 Sum_probs=54.1
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++|+.+.|...+.+|+| .++..+.+.+++..+.++|||++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~D~~ 62 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--------VEFLNKDLEVDGHFVTLQIWDTA 62 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--------eEEEEEEEEECCeEEEEEEEeCC
Confidence 458999999999999999999999999999999999 77766778889999999999987
No 340
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.66 E-value=9.6e-09 Score=87.47 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=50.8
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|+.+.|...|.||++ ..| .+.+.+++..+.++|||++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~i~Dt~ 57 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--------DSY-RKQVVIDGETCLLDILDTA 57 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcch--------heE-EEEEEECCEEEEEEEEECC
Confidence 6899999999999999999999999999999998 555 3677889999999999986
No 341
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.66 E-value=9.2e-09 Score=90.99 Aligned_cols=57 Identities=32% Similarity=0.376 Sum_probs=51.9
Q ss_pred eEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|+.+.|.. .|.+|+| .+|..+.+.++|..+.|+|||++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~ 58 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIG--------AAFVAKRMVVGERVVTLGIWDTA 58 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCccccee--------eEEEEEEEEECCEEEEEEEEECC
Confidence 489999999999999999999999985 7999999 77766778899999999999987
No 342
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.65 E-value=8.6e-09 Score=91.98 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=50.9
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||+|+++|+.+.|...|.||++ .++..+.+.++|+.+.++|||++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~--------~~~~~~~i~~~~~~~~l~i~Dt~ 57 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEH--------RRLYRPAVVLSGRVYDLHILDVP 57 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccc--------cccceeEEEECCEEEEEEEEeCC
Confidence 4899999999999999999999999999999999 56555667789999999999974
No 343
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.65 E-value=2.6e-07 Score=98.08 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=72.3
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcC------------cCc---------ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVF------------YPY---------LFSAAFITQTVCLDDVTIRFEIWDTAGQE 101 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~------------~~~---------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e 101 (373)
....++++|. |||||+.+++...- .+. |+..........++++.+.+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3445777775 99999999975310 000 22222111222335556789999999999
Q ss_pred cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
+|.......++.+|++++|+|.......+...-| ..+.. .+.|++++.||+|+..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~------------------------~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR------------------------ERVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH------------------------cCCCeEEEEECchhhc
Confidence 9888788889999999999998765332222222 22222 2457799999999753
No 344
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.65 E-value=1.3e-08 Score=87.57 Aligned_cols=60 Identities=35% Similarity=0.540 Sum_probs=54.6
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
..+|++++|++++|||+|++++..+.|...|.+|+| .++..+.+.+++..+.++|||++-
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~D~~G 61 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIG--------VDFTMKTLEIEGKRVKLQIWDTAG 61 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccc--------eEEEEEEEEECCEEEEEEEEECCC
Confidence 458999999999999999999999999999999999 777777888899999999999873
No 345
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3.5e-07 Score=87.89 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=94.0
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhC--cCcCc------------------------------ceeeeEEEEEEEECCE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINV--VFYPY------------------------------LFSAAFITQTVCLDDV 88 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~--~~~~~------------------------------Tig~~~~~~~i~~~~~ 88 (373)
...++.++++|. |||||+-|++-. .++.. -.|.++......+.-+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 446789999997 999999998743 11110 2334444444455556
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hHHHH--HHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TFGRA--KSWVKELQRMAPPNIDTFGRAKSWVKELQRM 163 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf~~i--~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
.+.+.|.|++|+..|-.-.-.-...||++|||+|+.+.+ .|..- .+-...+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~---------------------- 141 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLAR---------------------- 141 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHH----------------------
Confidence 678999999998766544444467899999999998763 11110 011111111
Q ss_pred CCCCCeEEEEEeCCCCCCCCcccCHHHH----HHHHHHcC-----CeEEEEcCCCCCCHHHH
Q psy18160 164 APPNIVIALAGNKADLPTSRRCVEYSEG----EAYAEENG-----LLFMETSAKTAMNVNEI 216 (373)
Q Consensus 164 ~~~~~piilVgnK~Dl~~~~~~v~~~e~----~~~~~~~~-----~~~~evSak~~~gI~~l 216 (373)
...--.+|++.||+|+.+- ++...++. ..+.+..| ++|+++|+..|.|+.+.
T Consensus 142 tlGi~~lIVavNKMD~v~w-de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 142 TLGIKQLIVAVNKMDLVSW-DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred hcCCceEEEEEEccccccc-CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 1123358999999999752 33333333 33445555 46999999999998653
No 346
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.65 E-value=1.1e-08 Score=90.11 Aligned_cols=58 Identities=34% Similarity=0.507 Sum_probs=52.8
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+|++++|++++|||+|+++|..+.|...|.||+| .++..+.+.+++..+.++|||++-
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~g 58 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIG--------VDFKIKTVYIENKIIKLQIWDTNG 58 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECCC
Confidence 5899999999999999999999999988999999 777767788899999999999873
No 347
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.64 E-value=3.9e-07 Score=87.22 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=89.0
Q ss_pred ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH----------hhHHHHHHHHHHHHhh
Q psy18160 73 LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ----------DTFGRAKSWVKELQRM 142 (373)
Q Consensus 73 Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~----------~Sf~~i~~~l~~i~~~ 142 (373)
|.|.. ...+.++ .+.+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..+..
T Consensus 148 T~Gi~--~~~f~~~--~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~- 222 (317)
T cd00066 148 TTGIV--ETKFTIK--NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN- 222 (317)
T ss_pred cCCee--EEEEEec--ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-
Confidence 55543 2334443 57799999999999999999999999999999999874 334444444444433
Q ss_pred CCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------c-ccCHHHHHHHHHH----------
Q psy18160 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------R-CVEYSEGEAYAEE---------- 197 (373)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~-~v~~~e~~~~~~~---------- 197 (373)
...-.+.|++|++||.|+..+. . .-+.+++..+...
T Consensus 223 -------------------~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~ 283 (317)
T cd00066 223 -------------------SRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPN 283 (317)
T ss_pred -------------------CccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCC
Confidence 1223678999999999964320 0 2234455444322
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
..+-...++|.+..++..+|+.+...+...
T Consensus 284 ~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 284 KEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred CeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 123356789999999999999888877654
No 348
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.64 E-value=1.3e-08 Score=91.70 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=52.2
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-CCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-LNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-~~~~~~l~iw~~~ 362 (373)
.+|++++|+++||||+|+++|..+.|...+.||+| .+|..+.+.+ ++..+.|+|||++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~--------~d~~~~~i~~~~~~~~~l~i~Dt~ 60 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVG--------VDFFSRLIEIEPGVRIKLQLWDTA 60 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceec--------eEEEEEEEEECCCCEEEEEEEeCC
Confidence 58999999999999999999999999999999999 7777677766 5789999999986
No 349
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.64 E-value=1.4e-08 Score=87.28 Aligned_cols=57 Identities=35% Similarity=0.550 Sum_probs=53.0
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|++++..+.|...|.||+| .+|..+.+.+++..++++|||++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~D~~ 59 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--------VDFKIRTIELDGKTIKLQIWDTA 59 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence 7999999999999999999999999999999999 77777778889999999999987
No 350
>PTZ00369 Ras-like protein; Provisional
Probab=98.64 E-value=1.3e-08 Score=89.94 Aligned_cols=57 Identities=26% Similarity=0.418 Sum_probs=52.1
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++|..+.|...|.||+| .+|. +.+.+++..+.++|||++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 61 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE--------DSYR-KQCVIDEETCLLDILDTA 61 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchh--------hEEE-EEEEECCEEEEEEEEeCC
Confidence 48999999999999999999999999999999999 5664 677889999999999986
No 351
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.63 E-value=1.2e-08 Score=87.54 Aligned_cols=56 Identities=34% Similarity=0.481 Sum_probs=50.8
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|+.+.|...|.||++ ..+. +.+.+++..+.|+|||++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 57 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--------DSYR-KQVEVDGQQCMLEILDTA 57 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch--------heEE-EEEEECCEEEEEEEEECC
Confidence 7999999999999999999999999999999999 5554 677789999999999987
No 352
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.63 E-value=1.2e-08 Score=87.43 Aligned_cols=56 Identities=32% Similarity=0.461 Sum_probs=50.6
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|+.+.|...|.||++ ++..+.+.++|..+.++|||++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~l~i~Dt~ 57 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE---------DFYRKEIEVDSSPSVLEILDTA 57 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh---------heEEEEEEECCEEEEEEEEECC
Confidence 7999999999999999999999999999999997 3444778889999999999986
No 353
>PLN03108 Rab family protein; Provisional
Probab=98.62 E-value=1.7e-08 Score=90.91 Aligned_cols=59 Identities=25% Similarity=0.473 Sum_probs=54.3
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...|.||+| .+|..+.+.+++..+.++|||++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--------~~~~~~~i~~~~~~i~l~l~Dt~ 63 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------VEFGARMITIDNKPIKLQIWDTA 63 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--------ceEEEEEEEECCEEEEEEEEeCC
Confidence 458999999999999999999999999999999999 77777778889999999999987
No 354
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.61 E-value=1.1e-06 Score=87.83 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=113.5
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEEC--CEEEEEEEEeCCCcccccccchhhccC----CcEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLD--DVTIRFEIWDTAGQERYHTLAPMYYRN----AQAAI 118 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~--~~~v~l~i~Dt~G~e~~~~l~~~~~~~----ad~ii 118 (373)
..++|+|+ |||||+.+|.+.+-...+.|.+|..-.+.-+ +...++.+|-..|...+..+.+..+.. --.+|
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vv 105 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVV 105 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEE
Confidence 47889998 9999999997655333377777765554432 245678999998876677766655542 35889
Q ss_pred EEEECCCHhhH-HHHHHHHHHHHhhCCCC-C-----------------------C----cccccchhHH----------h
Q psy18160 119 IVYDITNQDTF-GRAKSWVKELQRMAPPN-I-----------------------D----TFGRAKSWVK----------E 159 (373)
Q Consensus 119 lv~D~~~~~Sf-~~i~~~l~~i~~~~~~~-~-----------------------~----~~~~~~~~~~----------~ 159 (373)
+|.|++.|-.+ +.+.+|+..++++...- . + ...+...... .
T Consensus 106 IvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lp 185 (472)
T PF05783_consen 106 IVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLP 185 (472)
T ss_pred EEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCC
Confidence 99999998755 45667776655432110 0 0 0000000000 0
Q ss_pred hhh---cCCCCCeEEEEEeCCCCCCCC-cc-----cCH----HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 160 LQR---MAPPNIVIALAGNKADLPTSR-RC-----VEY----SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 160 ~~~---~~~~~~piilVgnK~Dl~~~~-~~-----v~~----~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+.. ...-++|++||.+|+|..... +. ... .-.+.+|-.+|...|.+|++...|++-|+..|...+..
T Consensus 186 l~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 186 LGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred CCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 000 001148999999999974310 11 111 12456777889999999999999999999998887754
No 355
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.61 E-value=1.7e-08 Score=89.28 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=50.2
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|++++|||+|+.+|..+.|...|.||++ .+|. +.+.+++..+.|+|||++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~--------~~~~-~~i~~~~~~~~l~i~Dt~ 56 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF--------ENYV-HDIFVDGLHIELSLWDTA 56 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcce--------eeeE-EEEEECCEEEEEEEEECC
Confidence 789999999999999999999999999999999 5554 667789999999999987
No 356
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.61 E-value=5.5e-07 Score=87.02 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=95.8
Q ss_pred HHHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH----
Q psy18160 61 TQIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ---- 126 (373)
Q Consensus 61 l~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~---- 126 (373)
+.|+....|.+. |.|.. ...+.+++ +.+.+||.+|+...+..|..++.++++++||+|+++-
T Consensus 149 ~~ri~~~~y~Pt~~Dil~~r~~T~Gi~--~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~ 224 (342)
T smart00275 149 IDRIGDPDYVPTEQDILRSRVPTTGIQ--ETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVL 224 (342)
T ss_pred HHHHhCCCCCCCHHHhhheeCCccceE--EEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccch
Confidence 345555566554 66654 33455554 5688999999999999999999999999999999973
Q ss_pred ------hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------ccc
Q psy18160 127 ------DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------RCV 186 (373)
Q Consensus 127 ------~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~~v 186 (373)
..+.+....+..+.. ...-.+.|++|++||.|+.... ...
T Consensus 225 ~Ed~~~nrl~esl~~f~~l~~--------------------~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~ 284 (342)
T smart00275 225 EEDESTNRMQESLNLFESICN--------------------SRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPN 284 (342)
T ss_pred hccCcchHHHHHHHHHHHHHc--------------------CccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCC
Confidence 234444444444433 1233679999999999974320 112
Q ss_pred CHHHHHHHHHH-----c------CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 187 EYSEGEAYAEE-----N------GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 187 ~~~e~~~~~~~-----~------~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+.+++.++... . .+-.+.++|.+-.++..+|+.+...+.++
T Consensus 285 ~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 285 DYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred CHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 33444443321 1 13356788999999999999888777654
No 357
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.61 E-value=1.8e-08 Score=89.75 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=48.3
Q ss_pred ceEEEEEccCccccceeeE-Eeee-----CcccccccCCccc-cccccceeeeeccee-eeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVL-RFVR-----GQFHEYQESTIGG-ECQSSHSISFSMPTK-NRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~-~~~~-----~~f~~~~~~Tig~-~~~~~~~~~~~~~~~-~v~~~~~~l~iw~~~ 362 (373)
.+|++++|+++||||+|+. ++.. +.|...|.||+|. ++.... .+|..+.. .++|+++.|+|||+|
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~-~~~~~~~~~~~~~~~v~l~iwDTa 74 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVC-QEVLERSRDVVDGVSVSLRLWDTF 74 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEE-eeeccccceeeCCEEEEEEEEeCC
Confidence 3799999999999999996 5543 4567889999983 332222 34443433 689999999999997
No 358
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.61 E-value=2e-08 Score=87.63 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=50.1
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeeccee---eeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTK---NRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~---~v~~~~~~l~iw~~~ 362 (373)
+.+|++++|+++||||+|+++|..+.|...|.||+|.+|..+. +.+..+.. ..++..+.++|||++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~ 71 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKR-VVYNSSGPGGTLGRGQRIHLQLWDTA 71 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEE-EEEcCccccccccCCCEEEEEEEeCC
Confidence 4589999999999999999999999999999999995554433 22221000 112678999999997
No 359
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.61 E-value=1.2e-08 Score=94.13 Aligned_cols=56 Identities=30% Similarity=0.473 Sum_probs=50.6
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|+.+.|...|.||++ ++..+.+.++|..+.|+|||++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~---------d~~~k~~~i~~~~~~l~I~Dt~ 56 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE---------DFHRKLYSIRGEVYQLDILDTS 56 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh---------HhEEEEEEECCEEEEEEEEECC
Confidence 4899999999999999999999999999999997 4545677789999999999997
No 360
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.59 E-value=2.1e-08 Score=86.83 Aligned_cols=58 Identities=31% Similarity=0.547 Sum_probs=53.2
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++|+.+.|...+.+|+| .+|..+.+.+++..+.++|||++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 59 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIG--------VDFRERTVEIDGERIKVQLWDTA 59 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcccccee--------EEEEEEEEEECCeEEEEEEEeCC
Confidence 37999999999999999999999999999999999 77777778889999999999975
No 361
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.59 E-value=2.6e-08 Score=85.56 Aligned_cols=58 Identities=33% Similarity=0.512 Sum_probs=53.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|++++..+.|...+.||+| .+|..+.+.+++..+.++|||++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~D~~ 60 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIG--------VEFATRSIQIDGKTIKAQIWDTA 60 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 47999999999999999999999999999999999 77877788889999999999987
No 362
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.59 E-value=1.9e-08 Score=86.42 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=48.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+|++++|++|+|||+|+.+|+.+.|...|.|+.+ +|. +.+.++|+.+.|+|||++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~---------~~~-~~i~~~~~~~~l~i~D~~g 56 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG---------RFK-KEVLVDGQSHLLLIRDEGG 56 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc---------ceE-EEEEECCEEEEEEEEECCC
Confidence 4889999999999999999999999988876643 554 7788999999999999873
No 363
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.57 E-value=2.4e-08 Score=85.31 Aligned_cols=57 Identities=30% Similarity=0.472 Sum_probs=51.1
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC--CeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL--NNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~--~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|++++..+.|...|.||+| .++..+.+.++ +..+.++|||++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~i~D~~ 59 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG--------VDFLEKQIFLRQSDEDVRLMLWDTA 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE--------EEEEEEEEEEcCCCCEEEEEEeeCC
Confidence 4899999999999999999999999999999999 67665667777 889999999986
No 364
>KOG0395|consensus
Probab=98.57 E-value=7.2e-08 Score=85.76 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=53.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.+|++++|.+|||||+|+.||+++.|.+.|.|||+ ..| .+.+.|+|..+.|.|+|.+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie--------d~y-~k~~~v~~~~~~l~ilDt~g 60 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE--------DSY-RKELTVDGEVCMLEILDTAG 60 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc--------ccc-eEEEEECCEEEEEEEEcCCC
Confidence 47999999999999999999999999999999998 444 59999999999999999986
No 365
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.56 E-value=3.2e-08 Score=89.30 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=53.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++|+|||||+++++.+.|...|.||+| .++....+..++..+.+++||++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~i~i~~~Dt~ 66 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLG--------VEVHPLKFYTNCGPICFNVWDTA 66 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------eEEEEEEEEECCeEEEEEEEECC
Confidence 3458999999999999999999999999999999999 67766667778999999999986
No 366
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.56 E-value=2.7e-08 Score=85.99 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=51.1
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++++.+.|...|.||+| .++....+..++..+.+.+||++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~ 57 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLDFHTNRGKIRFNVWDTA 57 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECC
Confidence 5899999999999999999999999999999999 66665566678899999999997
No 367
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.55 E-value=2.9e-08 Score=85.28 Aligned_cols=57 Identities=32% Similarity=0.407 Sum_probs=51.4
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||||+++++.+.|...+.+|++ .++..+.+.+++..+.++|||++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 57 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYA--------LTLYKHNAKFEGKTILVDFWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcee--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999999999999998 66665677789999999999986
No 368
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.55 E-value=2.1e-08 Score=88.75 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=49.3
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|++++|||||+++|+.+.|...|.||+| .++. +.+.++|..+.|+|||++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 55 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE--------DSYR-KQVVVDGQPCMLEVLDTA 55 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchH--------hhEE-EEEEECCEEEEEEEEECC
Confidence 579999999999999999999999999999999 5553 567789999999999997
No 369
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.54 E-value=1.8e-06 Score=77.04 Aligned_cols=54 Identities=22% Similarity=0.111 Sum_probs=39.6
Q ss_pred EEEEeCCCCCCCCcccCHHHHHHHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 171 ALAGNKADLPTSRRCVEYSEGEAYAEE--NGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 171 ilVgnK~Dl~~~~~~v~~~e~~~~~~~--~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++||+|+.+. .....+...+.++. .+.+++++||++|+|++++|++|.+...
T Consensus 141 ~~~~~k~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 141 LLVINKIDLAPM-VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred EEEEEhhhcccc-ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 889999999742 11223334444444 3578999999999999999999987654
No 370
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.53 E-value=4.3e-08 Score=84.71 Aligned_cols=60 Identities=23% Similarity=0.435 Sum_probs=54.2
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
..+|++++|++++|||+|++++..+.|...+.+|+| .++....+.+++..+.+.|||++-
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~G 62 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------VEFGARMITIDGKQIKLQIWDTAG 62 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECCC
Confidence 348999999999999999999999999999999999 778777788899999999999753
No 371
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.53 E-value=4.4e-08 Score=83.76 Aligned_cols=58 Identities=53% Similarity=0.693 Sum_probs=53.4
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|++++..+.|...+.+|+| .+|..+.+.+++..+++.|||.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~v~~~~~~~~~~i~D~~ 58 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIG--------AAFLTQTVNLDDTTVKFEIWDTA 58 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEeCC
Confidence 37999999999999999999999999998999999 77777888899999999999986
No 372
>KOG3905|consensus
Probab=98.51 E-value=1.4e-06 Score=80.91 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=108.9
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEE--CCEEEEEEEEeCCCcccccccchhhccCC----cEEEE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCL--DDVTIRFEIWDTAGQERYHTLAPMYYRNA----QAAII 119 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~--~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a----d~iil 119 (373)
.++++|+ |||||+.++-+.+......|..|..-.+.- .+...++.+|-.-|.--+..+....+... ..+||
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvil 133 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVIL 133 (473)
T ss_pred eEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEE
Confidence 6888997 999999999988733335555555444432 23455677887777655555554444322 47889
Q ss_pred EEECCCHh-hHHHHHHHHHHHHhhCCC-CC-------CcccccchhHHhh-----------hh-----------------
Q psy18160 120 VYDITNQD-TFGRAKSWVKELQRMAPP-NI-------DTFGRAKSWVKEL-----------QR----------------- 162 (373)
Q Consensus 120 v~D~~~~~-Sf~~i~~~l~~i~~~~~~-~~-------~~~~~~~~~~~~~-----------~~----------------- 162 (373)
+.|++++- -++.+.+|...+.++... .+ -.+...+.|-.=+ ++
T Consensus 134 tasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~ 213 (473)
T KOG3905|consen 134 TASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLG 213 (473)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccC
Confidence 99999994 566677887665442111 01 0000000010000 00
Q ss_pred ----cCCCCCeEEEEEeCCCCCCC------CcccCH----HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 163 ----MAPPNIVIALAGNKADLPTS------RRCVEY----SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 163 ----~~~~~~piilVgnK~Dl~~~------~~~v~~----~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
...-++|++||.+|+|.... -|.... ..+++||-.+|...+.+|+|...|++-+...|..++.
T Consensus 214 ~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 214 QDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred CcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 01125899999999998321 011111 1246778888999999999999999999999987654
No 373
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.50 E-value=4.5e-08 Score=86.62 Aligned_cols=57 Identities=32% Similarity=0.475 Sum_probs=50.7
Q ss_pred eEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|..+.|.. .|.+|++ .+|..+.+.+++..+.++|||++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 58 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVG--------IDFRNKVVTVDGVKVKLQIWDTA 58 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCccc--------ceeEEEEEEECCEEEEEEEEeCC
Confidence 589999999999999999999999964 7899999 67765667789999999999987
No 374
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.50 E-value=2.4e-06 Score=82.69 Aligned_cols=153 Identities=10% Similarity=0.114 Sum_probs=98.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhC----cCc-----------C--ccee-------eeE-EEEEEEE---CCEEEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINV----VFY-----------P--YLFS-------AAF-ITQTVCL---DDVTIRFEI 94 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~----~~~-----------~--~Tig-------~~~-~~~~i~~---~~~~v~l~i 94 (373)
..+.+.++|. |||||+|+|.+. ... . +..| .-| ..+.+++ ++-...+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4588999998 999999999988 444 1 1222 122 0022333 445567889
Q ss_pred EeCCCcccc--------cc--c-------------------chhhcc-CCcEEEEEE-ECC----CHhhHHHHH-HHHHH
Q psy18160 95 WDTAGQERY--------HT--L-------------------APMYYR-NAQAAIIVY-DIT----NQDTFGRAK-SWVKE 138 (373)
Q Consensus 95 ~Dt~G~e~~--------~~--l-------------------~~~~~~-~ad~iilv~-D~~----~~~Sf~~i~-~~l~~ 138 (373)
+||+|-..- .. + .+..+. ++|..|+|. |.+ .++.+...+ +|+.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999984211 11 0 223355 899999998 764 233444443 67777
Q ss_pred HHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCC--CCCCHHHH
Q psy18160 139 LQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAK--TAMNVNEI 216 (373)
Q Consensus 139 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak--~~~gI~~l 216 (373)
++. .++|.++|.||.|-... ...+.+.++...++.+++.+|+. ....|..+
T Consensus 176 Lk~------------------------~~kPfiivlN~~dp~~~---et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~i 228 (492)
T TIGR02836 176 LKE------------------------LNKPFIILLNSTHPYHP---ETEALRQELEEKYDVPVLAMDVESMRESDILSV 228 (492)
T ss_pred HHh------------------------cCCCEEEEEECcCCCCc---hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHH
Confidence 766 58899999999993222 23333456667788888888875 45578888
Q ss_pred HHHHHHHcc
Q psy18160 217 FVEIAKKLP 225 (373)
Q Consensus 217 f~~L~~~i~ 225 (373)
++.++...+
T Consensus 229 l~~vL~EFP 237 (492)
T TIGR02836 229 LEEVLYEFP 237 (492)
T ss_pred HHHHHhcCC
Confidence 888776554
No 375
>PLN03118 Rab family protein; Provisional
Probab=98.50 E-value=7.4e-08 Score=86.68 Aligned_cols=63 Identities=27% Similarity=0.424 Sum_probs=54.2
Q ss_pred ccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 291 ~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.......+|++++|++++|||+|+++|+.+.| ..+.||+| .++..+.+.+++..+.+.|||++
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~Dt~ 70 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIG--------VDFKIKQLTVGGKRLKLTIWDTA 70 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCce--------eEEEEEEEEECCEEEEEEEEECC
Confidence 33445679999999999999999999998887 46889999 77777778889999999999987
No 376
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.50 E-value=5.1e-08 Score=83.35 Aligned_cols=57 Identities=30% Similarity=0.495 Sum_probs=52.1
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|++++..+.|...+.+|+| .++....+.+++..+.++|||+.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~l~D~~ 57 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG--------VEFGSKIIRVGGKRVKLQIWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eeEEEEEEEECCEEEEEEEEECc
Confidence 5899999999999999999999999999999999 77766777888999999999986
No 377
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.49 E-value=5.2e-08 Score=84.51 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=50.3
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.|++++|++++|||+|+++|..+.|...|.||++ ..+. +.+.+++..+.+.|||++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 57 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--------ENYV-ADIEVDGKQVELALWDTA 57 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------cceE-EEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999999999999998 5553 566788999999999987
No 378
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.49 E-value=4.7e-08 Score=85.91 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=49.4
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|..+.|...|.||++ .+|. +.+..+ +..+.++|||++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~-~~i~~~~~~~~~l~i~Dt~ 57 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVF--------ENYV-TNIQGPNGKIIELALWDTA 57 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeee--------eeeE-EEEEecCCcEEEEEEEECC
Confidence 4899999999999999999999999999999999 6664 556665 889999999986
No 379
>KOG4252|consensus
Probab=98.49 E-value=3.5e-09 Score=89.90 Aligned_cols=61 Identities=28% Similarity=0.383 Sum_probs=57.6
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+.-+|++++|.++|||++++.|||.+.|...|.-||| +||....+.|++..+++.+||.|+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIg--------vdflerqi~v~~Edvr~mlWdtag 78 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIG--------VDFLERQIKVLIEDVRSMLWDTAG 78 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccc--------hhhhhHHHHhhHHHHHHHHHHhcc
Confidence 3458999999999999999999999999999999999 899989999999999999999986
No 380
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.48 E-value=6.3e-08 Score=83.49 Aligned_cols=57 Identities=28% Similarity=0.420 Sum_probs=52.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|++++..+.|...+.+|+| .++..+.+.+++..+++++||++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~D~~ 57 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--------ADFLTKEVTVDDKLVTLQIWDTA 57 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999999999999999 77777778889999999999996
No 381
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.48 E-value=6.2e-08 Score=82.68 Aligned_cols=57 Identities=33% Similarity=0.487 Sum_probs=52.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++++...|...+.||++ .++..+.+.+++..++++|||+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~D~~ 57 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIG--------IDFLSKTMYLEDKTVRLQLWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCcee--------eeEEEEEEEECCEEEEEEEEECC
Confidence 4889999999999999999999999999999999 78877888899999999999975
No 382
>KOG4423|consensus
Probab=98.48 E-value=8.7e-10 Score=94.17 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=56.9
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM 364 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~ 364 (373)
....+|+.++|+.++|||+++.||+...|+..|.+|||++|+.++ ..+. |...++|||||||.-
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkV-l~wd------d~t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKV-LQWD------DKTIVRLQLWDIAGQ 85 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHH-hccC------hHHHHHHHHhcchhh
Confidence 455689999999999999999999999999999999998888888 6676 667899999999963
No 383
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.48 E-value=6.7e-08 Score=82.65 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=51.1
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++|+.+.|...|.||++ ..+. +.+.+++..+.++|||++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 58 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE--------DSYT-KQCEIDGQWAILDILDTA 58 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc--------ceEE-EEEEECCEEEEEEEEECC
Confidence 47999999999999999999999999999999998 5553 667789999999999987
No 384
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.47 E-value=4.8e-08 Score=83.69 Aligned_cols=56 Identities=32% Similarity=0.468 Sum_probs=49.9
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++++.+.|...|.||++ ..+ .+.+.+++..+.++|||++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~ 56 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE--------DSY-RKQIEIDGEVCLLDILDTA 56 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh--------hhE-EEEEEECCEEEEEEEEECC
Confidence 4899999999999999999999999999999998 444 3667789999999999986
No 385
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.47 E-value=6.2e-08 Score=83.02 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=49.4
Q ss_pred eEEEEEccCccccceeeEEeeeC--cccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~--~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|++++..+ .|...|.||+| .++..+.+.++ +..+.+.|||++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~l~i~Dt~ 60 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTG--------CDFVVKEVPVDTDNTVELFIFDSA 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceE--------EEEEEEEEEeCCCCEEEEEEEECC
Confidence 48999999999999999999865 79999999999 67766666665 688999999985
No 386
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.46 E-value=5.2e-07 Score=78.65 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred eEEEEEccCccccceeeEEeeeCc
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQ 321 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~ 321 (373)
++++++|.+++|||+|++++....
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc
Confidence 678999999999999999998653
No 387
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.46 E-value=6.1e-08 Score=88.01 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=51.5
Q ss_pred eEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++|||||+|+++|+.+.|. ..|.||++ .++..+.+.+++..+.|.|||++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~--------~~~~~~~i~~~~~~~~l~i~Dt~ 58 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD--------DDTYERTVSVDGEESTLVVIDHW 58 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc--------ccceEEEEEECCEEEEEEEEeCC
Confidence 58999999999999999999999997 78999998 67767888899999999999986
No 388
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.46 E-value=5e-08 Score=87.22 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=48.1
Q ss_pred EccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 303 LGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 303 iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|+++||||+|+.||+.+.|...|.||+| .+|..+.+.+++..++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig--------~~~~~~~~~~~~~~~~l~iwDt~ 52 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLVFHTNRGPIRFNVWDTA 52 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCcee--------EEEEEEEEEECCEEEEEEEEECC
Confidence 59999999999999999999999999999 77777778889999999999986
No 389
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.46 E-value=7.5e-08 Score=86.77 Aligned_cols=57 Identities=30% Similarity=0.413 Sum_probs=50.8
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++|+|||||+++|..+.|...|.||+| .+|.......++..+++++||++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~Dt~ 62 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG--------NLDPAKTIEPYRRNIKLQLWDTA 62 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee--------eeeEEEEEEeCCCEEEEEeecCC
Confidence 8999999999999999999999999999999999 66765555555669999999996
No 390
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.46 E-value=6.4e-08 Score=84.08 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=49.7
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+.+|..+.|...|.||++ ++....+.+++..++++|||++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~~~i~Dt~ 56 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF---------DNFSVVVLVDGKPVRLQLCDTA 56 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---------eeeeEEEEECCEEEEEEEEECC
Confidence 5899999999999999999999999999999986 3334677889999999999987
No 391
>KOG1144|consensus
Probab=98.45 E-value=7.9e-07 Score=90.27 Aligned_cols=160 Identities=16% Similarity=0.099 Sum_probs=102.0
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEE--------EEECC----EEEEEEEEeCCCcc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQT--------VCLDD----VTIRFEIWDTAGQE 101 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~--------i~~~~----~~v~l~i~Dt~G~e 101 (373)
+....-++++|- |||-|+..+-+.+.... -||.+|.... +.-++ +.--+.++||+|+|
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 334556788886 99999999987654443 5565554322 00011 11237789999999
Q ss_pred cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
.|..++.....-||.+|+|+|+...---+.++. +..+ ...+.|.||..||+|..-
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lL------------------------R~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLL------------------------RMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHH-HHHH------------------------HhcCCCeEEeehhhhhhc
Confidence 999999999999999999999976422222221 1122 236889999999999643
Q ss_pred CCcccC---------------HHH--------HHHHHHH-cC-------------CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 182 SRRCVE---------------YSE--------GEAYAEE-NG-------------LLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 182 ~~~~v~---------------~~e--------~~~~~~~-~~-------------~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.....+ ..+ +.+|+.+ ++ +..+++||-+|+||-+|+.+|+...
T Consensus 607 gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 607 GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 210000 000 1122221 01 2478999999999999999988765
Q ss_pred chhh
Q psy18160 225 PKKE 228 (373)
Q Consensus 225 ~~~~ 228 (373)
...+
T Consensus 687 Qk~m 690 (1064)
T KOG1144|consen 687 QKTM 690 (1064)
T ss_pred HHHH
Confidence 5443
No 392
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.44 E-value=2.3e-06 Score=76.91 Aligned_cols=56 Identities=20% Similarity=0.102 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 167 NIVIALAGNKADLPTSRRCVEYSEGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 167 ~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
..|.++++||+|+.+. .....++..+..+..+ .+++++||+++.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~-~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEA-VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHcccc-chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999653 2223344555555444 789999999999999999999764
No 393
>KOG1490|consensus
Probab=98.44 E-value=1.1e-06 Score=85.95 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=95.0
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEE---ECCEEEEEEEEeCCCcccccc----cchh----hc-cC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVC---LDDVTIRFEIWDTAGQERYHT----LAPM----YY-RN 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~---~~~~~v~l~i~Dt~G~e~~~~----l~~~----~~-~~ 113 (373)
..+++|. |||||+|.+.......... .|.++.+. ++-+...+++.||||.-.... .+.. .+ +=
T Consensus 170 TlllcG~PNVGKSSf~~~vtradvevqpY--aFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 170 TLLVCGYPNVGKSSFNNKVTRADDEVQPY--AFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred eEEEecCCCCCcHhhcccccccccccCCc--ccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 4555555 9999999998776554400 01112221 233556789999999632211 1110 11 11
Q ss_pred CcEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH-
Q psy18160 114 AQAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE- 190 (373)
Q Consensus 114 ad~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e- 190 (373)
-.+++++.|++..- |...--.++..|.- .-.+.|.|+|.||+|+... ..++.+.
T Consensus 248 raaVLYfmDLSe~CGySva~QvkLfhsIKp----------------------LFaNK~~IlvlNK~D~m~~-edL~~~~~ 304 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKP----------------------LFANKVTILVLNKIDAMRP-EDLDQKNQ 304 (620)
T ss_pred hhhheeeeechhhhCCCHHHHHHHHHHhHH----------------------HhcCCceEEEeecccccCc-cccCHHHH
Confidence 35788999998754 44443345555543 1247899999999998654 2233332
Q ss_pred --HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 191 --GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 191 --~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
.+.+....+++++++|..+.+||.++-...+..+...+
T Consensus 305 ~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 305 ELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred HHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence 23344555689999999999999988877776665443
No 394
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.44 E-value=8.5e-08 Score=82.82 Aligned_cols=56 Identities=30% Similarity=0.444 Sum_probs=51.2
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|..+.|...|.||++ ..|. +.+.+++..+.++|||++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 57 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE--------DSYR-KQVEIDGRQCDLEILDTA 57 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch--------heEE-EEEEECCEEEEEEEEeCC
Confidence 6899999999999999999999999999999998 5563 778889999999999987
No 395
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.43 E-value=9e-08 Score=82.42 Aligned_cols=56 Identities=36% Similarity=0.526 Sum_probs=49.0
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|+.+.|...|.||++ ..|. +.+..++..+.++|||++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 57 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE--------DTYR-QVISCSKNICTLQITDTT 57 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch--------heEE-EEEEECCEEEEEEEEECC
Confidence 7899999999999999999999999999999998 4443 455667889999999986
No 396
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.43 E-value=1.6e-06 Score=93.38 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=52.3
Q ss_pred EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160 88 VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN 167 (373)
Q Consensus 88 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (373)
..+.+.++||||+..|.......++.+|++|+|+|+.+.-...... .+..+.. .+
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~------------------------~~ 150 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG------------------------ER 150 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH------------------------CC
Confidence 3577899999999999887788889999999999998764333222 2233333 47
Q ss_pred CeEEEEEeCCCCC
Q psy18160 168 IVIALAGNKADLP 180 (373)
Q Consensus 168 ~piilVgnK~Dl~ 180 (373)
+|++++.||+|..
T Consensus 151 ~p~i~~iNK~D~~ 163 (843)
T PLN00116 151 IRPVLTVNKMDRC 163 (843)
T ss_pred CCEEEEEECCccc
Confidence 8999999999986
No 397
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.42 E-value=2.5e-06 Score=80.38 Aligned_cols=114 Identities=6% Similarity=-0.011 Sum_probs=65.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc-------hhhc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA-------PMYY 111 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~-------~~~~ 111 (373)
...+++++|. ||||++|++++.+.... +.+..........++ ..+.+|||||..+..... ..++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 4578999997 99999999998764322 111111112222344 578999999976542221 1122
Q ss_pred --cCCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 112 --RNAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 112 --~~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
.+.|++++|..++... +... ...++.+...... .--.+++||.|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~-------------------~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGK-------------------DIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhh-------------------hhhccEEEEEECCccCC
Confidence 2689999997665321 2211 2233333331100 01236899999999764
No 398
>PRK13768 GTPase; Provisional
Probab=98.42 E-value=8.4e-07 Score=82.22 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=71.2
Q ss_pred EEEEEeCCCcccc---cccchhhccC-----CcEEEEEEECCCHhhHHHHH--HHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160 91 RFEIWDTAGQERY---HTLAPMYYRN-----AQAAIIVYDITNQDTFGRAK--SWVKELQRMAPPNIDTFGRAKSWVKEL 160 (373)
Q Consensus 91 ~l~i~Dt~G~e~~---~~l~~~~~~~-----ad~iilv~D~~~~~Sf~~i~--~~l~~i~~~~~~~~~~~~~~~~~~~~~ 160 (373)
.+.+||++|+.+. +..++.+++. ++++++++|........+.. .|+.....
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~------------------- 158 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ------------------- 158 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-------------------
Confidence 5789999998664 3344333332 89999999996654333322 23322221
Q ss_pred hhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH----------------------------HHHHcC--CeEEEEcCCCC
Q psy18160 161 QRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA----------------------------YAEENG--LLFMETSAKTA 210 (373)
Q Consensus 161 ~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~----------------------------~~~~~~--~~~~evSak~~ 210 (373)
...+.|+++|.||+|+..... .++..+ ..+..+ .+++++||+++
T Consensus 159 ---~~~~~~~i~v~nK~D~~~~~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~ 232 (253)
T PRK13768 159 ---LRLGLPQIPVLNKADLLSEEE---LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTG 232 (253)
T ss_pred ---HHcCCCEEEEEEhHhhcCchh---HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCC
Confidence 113689999999999865411 111111 122334 57899999999
Q ss_pred CCHHHHHHHHHHHcc
Q psy18160 211 MNVNEIFVEIAKKLP 225 (373)
Q Consensus 211 ~gI~~lf~~L~~~i~ 225 (373)
+|++++.++|.+.+.
T Consensus 233 ~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 233 EGFDELYAAIQEVFC 247 (253)
T ss_pred cCHHHHHHHHHHHcC
Confidence 999999999988764
No 399
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.41 E-value=1.1e-07 Score=82.28 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=49.6
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++|+.+.|...|.||++ ..+. ..+.+++..+.++|||++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 56 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF--------DHYA-VSVTVGGKQYLLGLYDTA 56 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eeeE-EEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999999999999997 4443 567789999999999986
No 400
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.40 E-value=7e-08 Score=82.95 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=49.2
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
|++++|++++|||+|+.+++.+.|...|.||++ ..+. +.+.++++.++++|||+.-
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~D~~g 56 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE--------SLYS-RQVTIDGEQVSLEILDTAG 56 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH--------Hhce-EEEEECCEEEEEEEEECCC
Confidence 589999999999999999999999999999997 4453 6677899999999999863
No 401
>PRK09866 hypothetical protein; Provisional
Probab=98.40 E-value=2.6e-06 Score=86.70 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=70.9
Q ss_pred EEEEEeCCCcccc-----cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160 91 RFEIWDTAGQERY-----HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165 (373)
Q Consensus 91 ~l~i~Dt~G~e~~-----~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
.+.|.||||.... .......+..+|+++||+|.++..+..+- ..++.+.. ..
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk----------------------~~ 287 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILA----------------------VG 287 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHh----------------------cC
Confidence 4678899997542 11233468899999999999875443332 23333333 11
Q ss_pred CCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----cC---CeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 166 PNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----NG---LLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 166 ~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----~~---~~~~evSak~~~gI~~lf~~L~~ 222 (373)
...|+++|.||+|+.+. .....+...++.+. .+ ..+|++||+.|.|++++++.|..
T Consensus 288 K~~PVILVVNKIDl~dr-eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 288 QSVPLYVLVNKFDQQDR-NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCCEEEEEEcccCCCc-ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 23599999999998642 12223444444321 12 25899999999999999999876
No 402
>PTZ00416 elongation factor 2; Provisional
Probab=98.39 E-value=1.8e-06 Score=92.83 Aligned_cols=108 Identities=11% Similarity=0.097 Sum_probs=72.1
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcC------------cCc---------ceeeeEEEEEEEEC--------CEEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVF------------YPY---------LFSAAFITQTVCLD--------DVTIRFE 93 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~------------~~~---------Tig~~~~~~~i~~~--------~~~v~l~ 93 (373)
....++++|. |||||+++++...- .+. |+... ...+.++ ++...+.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~--~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKST--GISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeecc--ceEEEeecccccccCCCceEEE
Confidence 3446777776 99999999986311 110 22111 1122222 2356789
Q ss_pred EEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEE
Q psy18160 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALA 173 (373)
Q Consensus 94 i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilV 173 (373)
++||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+.. .++|++++
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~------------------------~~~p~iv~ 150 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ------------------------ERIRPVLF 150 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH------------------------cCCCEEEE
Confidence 999999998877777888999999999999875433322 22333333 46799999
Q ss_pred EeCCCCC
Q psy18160 174 GNKADLP 180 (373)
Q Consensus 174 gnK~Dl~ 180 (373)
.||+|+.
T Consensus 151 iNK~D~~ 157 (836)
T PTZ00416 151 INKVDRA 157 (836)
T ss_pred EEChhhh
Confidence 9999986
No 403
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.38 E-value=1.2e-07 Score=82.22 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=48.3
Q ss_pred EEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 300 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
++++|++++|||+|+++|+.+.|...|.||++ ..|. +.+.+++..+.++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 54 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF--------ENYS-ADVEVDGKPVELGLWDTA 54 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE--------eeee-EEEEECCEEEEEEEEECC
Confidence 47899999999999999999999999999998 5564 667789999999999986
No 404
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=3.8e-06 Score=81.39 Aligned_cols=139 Identities=17% Similarity=0.048 Sum_probs=89.6
Q ss_pred ChhHHHHHhhhCcCcCc--------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH-
Q psy18160 56 RVDCMTQIVINVVFYPY--------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ- 126 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~--------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~- 126 (373)
|||||+..+.+..-..- |+...|+.. ...+ ..+.++|.+|++++-.-.-.-+...|.++||+|.++.
T Consensus 12 gkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~--~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl 87 (447)
T COG3276 12 GKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR--KLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGL 87 (447)
T ss_pred cchhhhhhhcccccccchhhhhcCceEeeeeEec--cCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCc
Confidence 99999999998643322 554444422 2222 3788999999998765444556689999999999653
Q ss_pred --hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHHHcCCeEE
Q psy18160 127 --DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC-VEYSEGEAYAEENGLLFM 203 (373)
Q Consensus 127 --~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~~~~~~~~ 203 (373)
.+-+.+. .++.+ .....++|.||+|..+..+. ...+++.+...--..++|
T Consensus 88 ~~qtgEhL~-iLdll--------------------------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~ 140 (447)
T COG3276 88 MAQTGEHLL-ILDLL--------------------------GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIF 140 (447)
T ss_pred chhhHHHHH-HHHhc--------------------------CCCceEEEEeccccccHHHHHHHHHHHHhhccccccccc
Confidence 3333332 11111 12346999999998764211 011112221122235789
Q ss_pred EEcCCCCCCHHHHHHHHHHHcc
Q psy18160 204 ETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 204 evSak~~~gI~~lf~~L~~~i~ 225 (373)
.+|+++|+||++|.+.|.....
T Consensus 141 ~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 141 KTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccccccCCCHHHHHHHHHHhhh
Confidence 9999999999999999988774
No 405
>PTZ00258 GTP-binding protein; Provisional
Probab=98.35 E-value=7.5e-06 Score=79.97 Aligned_cols=79 Identities=11% Similarity=-0.012 Sum_probs=51.6
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQ 100 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~ 100 (373)
..+.++++++|- |||||+|++++...... |+.... ..+.+.+. ...++++||||.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~--g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNT--ARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceE--EEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 355678889986 99999999988754332 444333 23333322 235899999996
Q ss_pred cccc----ccchh---hccCCcEEEEEEECC
Q psy18160 101 ERYH----TLAPM---YYRNAQAAIIVYDIT 124 (373)
Q Consensus 101 e~~~----~l~~~---~~~~ad~iilv~D~~ 124 (373)
.+-. .+... .++++|++++|+|..
T Consensus 96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4321 12222 367899999999973
No 406
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.34 E-value=2.3e-07 Score=79.22 Aligned_cols=57 Identities=39% Similarity=0.595 Sum_probs=51.1
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|++++....|...+.+|++ .++....+.+++..+.++|||+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~D~~ 57 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG--------VDFKTKTIEVDGKRVKLQIWDTA 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECC
Confidence 5899999999999999999999999999999999 67666677788999999999964
No 407
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.32 E-value=3.1e-07 Score=79.03 Aligned_cols=59 Identities=32% Similarity=0.519 Sum_probs=53.5
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+.++..+.+...+.+|+| .++..+.+.+++..+.+.+||++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~D~~ 64 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG--------VDFMIKTVEIKGEKIKLQIWDTA 64 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eEEEEEEEEECCEEEEEEEEECC
Confidence 458999999999999999999998889888999999 77777778899999999999986
No 408
>KOG1673|consensus
Probab=98.32 E-value=2.8e-07 Score=76.70 Aligned_cols=59 Identities=24% Similarity=0.485 Sum_probs=55.4
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV 361 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~ 361 (373)
...+|+.++|++.+|||+|+.+|+++++.+.|..|.| ++|.-+++.+.|..|.+.|||+
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~G--------vN~mdkt~~i~~t~IsfSIwdl 76 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLG--------VNFMDKTVSIRGTDISFSIWDL 76 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhC--------ccceeeEEEecceEEEEEEEec
Confidence 4578999999999999999999999999999999999 7888888999999999999997
No 409
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.30 E-value=4.9e-06 Score=76.84 Aligned_cols=113 Identities=9% Similarity=0.032 Sum_probs=66.1
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc---c-------
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT---L------- 106 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~---l------- 106 (373)
..++++++|. |||||+|++++...... |..... .....++ ..+.+|||||...... .
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 4578999997 99999999999765433 322222 2223344 5689999999764421 1
Q ss_pred chhhcc--CCcEEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 107 APMYYR--NAQAAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 107 ~~~~~~--~ad~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
...++. ..|++++|..++.. .++.+ ...++.+...... .--.++++|.||+|....
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~-------------------~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGP-------------------SIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhCh-------------------hhHhCEEEEEeCCccCCC
Confidence 122333 57888888766542 22222 1233333331000 011369999999998543
No 410
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=8.5e-06 Score=75.89 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=98.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEE------------E------C----CEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVC------------L------D----DVTIRF 92 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~------------~------~----~~~v~l 92 (373)
..+.|-++|- |||||...+.+- .+++. |+..-|....+. . . .-...+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4577888886 999999999864 34443 333222111110 0 0 122367
Q ss_pred EEEeCCCcccccccchhhccCCcEEEEEEECCCHh----hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 93 EIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD----TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 93 ~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~----Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
.|.|.+|+|-.-+..-+-..=-|++++|.+.+.+- +-+++. .+.- ..-.
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~----AleI-----------------------igik 141 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM----ALEI-----------------------IGIK 141 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH----HHhh-----------------------hccc
Confidence 89999999865433222233459999999998743 333332 1211 1234
Q ss_pred eEEEEEeCCCCCCCCcc-cCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 169 VIALAGNKADLPTSRRC-VEYSEGEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 169 piilVgnK~Dl~~~~~~-v~~~e~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.+++|-||.||...++. ...+++++|.+. -+.|++++||..+.||+-+++.|.+.+...
T Consensus 142 ~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 142 NIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred eEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 68999999999764222 334455555543 246899999999999999999999998754
No 411
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.29 E-value=3.2e-07 Score=78.26 Aligned_cols=57 Identities=35% Similarity=0.524 Sum_probs=50.4
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|++++..+.|...+.||+| .++....+.+++..+.++|||+.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~D~~ 57 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIG--------VDFKVKTLTVDGKKVKLAIWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCccc--------ceEEEEEEEECCEEEEEEEEECC
Confidence 5899999999999999999999999888999999 66655566678889999999986
No 412
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.28 E-value=2.9e-07 Score=78.48 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=50.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+|++++|++++|||||+++++.+.|...|.+|++ ..+. +.+.+++..+.++|||.+-
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~i~D~~g 57 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEDVQLNILDTAG 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch--------hhEE-EEEEECCEEEEEEEEECCC
Confidence 5899999999999999999999999999999998 4553 6677899999999999853
No 413
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.26 E-value=1.2e-05 Score=73.10 Aligned_cols=133 Identities=9% Similarity=0.031 Sum_probs=75.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
-..++++|. |||||++.+.+..-... ..|. + .+ .......+.++||+|.- ..+ ...++.+|++++|
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 355677775 99999999987521111 1221 1 11 11234567899999853 222 2346789999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcccC--HHHHHH-HHH
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRCVE--YSEGEA-YAE 196 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~v~--~~e~~~-~~~ 196 (373)
+|.+....... ..++..+.. .+.| +++|.||.|+........ .++.++ +..
T Consensus 111 iDa~~~~~~~~-~~i~~~l~~------------------------~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~ 165 (225)
T cd01882 111 IDASFGFEMET-FEFLNILQV------------------------HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWT 165 (225)
T ss_pred EecCcCCCHHH-HHHHHHHHH------------------------cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHH
Confidence 99976443222 223333333 2456 456999999864311111 112222 222
Q ss_pred H--cCCeEEEEcCCCCCC
Q psy18160 197 E--NGLLFMETSAKTAMN 212 (373)
Q Consensus 197 ~--~~~~~~evSak~~~g 212 (373)
+ .+.+++.+||++.-.
T Consensus 166 ~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 166 EVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred hhCCCCcEEEEeeccCCC
Confidence 2 235799999998743
No 414
>KOG3886|consensus
Probab=98.26 E-value=1.9e-06 Score=76.67 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=83.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCc--Cc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc-----cccchhhccC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFY--PY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY-----HTLAPMYYRN 113 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~--~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~-----~~l~~~~~~~ 113 (373)
.|++++|. ||||+-.-+..+... .. |+.+.. -.+.+-| .+.+.+||.+|||.+ .......+++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveH--sh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEH--SHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeee--hhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 46667775 999987665533221 11 444333 2333333 356899999999844 2245667899
Q ss_pred CcEEEEEEECCCHhhHHHHHHH---HHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-cccCHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSW---VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-RCVEYS 189 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~---l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-~~v~~~ 189 (373)
.+++++|||++.++=..++..+ ++.+.+ ..+...++....|.|+.... +.+..+
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~----------------------~SP~AkiF~l~hKmDLv~~d~r~~if~ 139 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQ----------------------NSPEAKIFCLLHKMDLVQEDARELIFQ 139 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHh----------------------cCCcceEEEEEeechhcccchHHHHHH
Confidence 9999999999887644444433 333333 56788999999999996531 222222
Q ss_pred H----HHHHHHHcCCeEEEEcCCC
Q psy18160 190 E----GEAYAEENGLLFMETSAKT 209 (373)
Q Consensus 190 e----~~~~~~~~~~~~~evSak~ 209 (373)
+ ...+.+..++.++++|.-+
T Consensus 140 ~r~~~l~~~s~~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 140 RRKEDLRRLSRPLECKCFPTSIWD 163 (295)
T ss_pred HHHHHHHHhcccccccccccchhh
Confidence 1 2223333456678777653
No 415
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.22 E-value=3.5e-07 Score=78.91 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=44.0
Q ss_pred EEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 300 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
++++|++++|||+|+++|..+.|...|.||+| .++ +.+++..++++|||++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g--------~~~----~~i~~~~~~l~i~Dt~ 52 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--------FNS----VAIPTQDAIMELLEIG 52 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCC--------cce----EEEeeCCeEEEEEECC
Confidence 68999999999999999999999999999999 332 3456778999999986
No 416
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=2e-06 Score=82.51 Aligned_cols=93 Identities=19% Similarity=0.172 Sum_probs=59.7
Q ss_pred CCc-ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160 98 AGQ-ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK 176 (373)
Q Consensus 98 ~G~-e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK 176 (373)
+|+ .++.......+..+|.++-|.|+.++.+...-. +.+ ...+.|.++|+||
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~-----l~~----------------------~v~~k~~i~vlNK 70 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPE-----LER----------------------IVKEKPKLLVLNK 70 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccCcc-----HHH----------------------HHccCCcEEEEeh
Confidence 443 455566677788999999999999987533211 111 0123455999999
Q ss_pred CCCCCCCcccCHHHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160 177 ADLPTSRRCVEYSEGEA-YAEENGLLFMETSAKTAMNVNEIFVEI 220 (373)
Q Consensus 177 ~Dl~~~~~~v~~~e~~~-~~~~~~~~~~evSak~~~gI~~lf~~L 220 (373)
+||.+. .+ .++..+ +.+..+...+.+|++.+.+...+...+
T Consensus 71 ~DL~~~--~~-~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~ 112 (322)
T COG1161 71 ADLAPK--EV-TKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKAL 112 (322)
T ss_pred hhcCCH--HH-HHHHHHHHHhcCCCccEEEEeecccCccchHHHH
Confidence 999763 22 333333 333336677889999888777666433
No 417
>KOG0458|consensus
Probab=98.19 E-value=2e-05 Score=78.69 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=98.6
Q ss_pred ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCc----------------------CcC---------c-ceeeeEEEEEE
Q psy18160 39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVV----------------------FYP---------Y-LFSAAFITQTV 83 (373)
Q Consensus 39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~----------------------~~~---------~-Tig~~~~~~~i 83 (373)
-.+..+...+..+++|. |||||+-+++..- |.- . -.|+....+..
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 34456668899999997 9999998887431 110 0 34455555666
Q ss_pred EECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHH-------HHHHHHHHhhCCCCCCcccccchh
Q psy18160 84 CLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA-------KSWVKELQRMAPPNIDTFGRAKSW 156 (373)
Q Consensus 84 ~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i-------~~~l~~i~~~~~~~~~~~~~~~~~ 156 (373)
.++-....+.|.|+||+..|-.-.-.-...||++++|+|++- ..|+.- .+....++.
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~--------------- 312 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRS--------------- 312 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHH---------------
Confidence 667777889999999987776544445668999999999864 333321 111111111
Q ss_pred HHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH----HHHH-HHcC-----CeEEEEcCCCCCCHHHH
Q psy18160 157 VKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG----EAYA-EENG-----LLFMETSAKTAMNVNEI 216 (373)
Q Consensus 157 ~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~----~~~~-~~~~-----~~~~evSak~~~gI~~l 216 (373)
. .-.-++|+.||+|+.+= .+-..+++ ..|. +..| +.|+++|+.+|+|+...
T Consensus 313 ------L--gi~qlivaiNKmD~V~W-sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 313 ------L--GISQLIVAINKMDLVSW-SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ------c--CcceEEEEeecccccCc-cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 1 13358999999999652 22223333 2344 3444 46999999999998654
No 418
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.19 E-value=5.5e-07 Score=79.12 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=46.8
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-CCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-LNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|++++..+.|... .||+| .++....+.+ ++..+.++|||++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~--------~~~~~~~~~~~~~~~~~l~l~Dt~ 60 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKG--------FNTEKIKVSLGNSKGITFHFWDVG 60 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccc--------cceeEEEeeccCCCceEEEEEECC
Confidence 48999999999999999999999988765 68999 5554444444 4578999999986
No 419
>KOG0410|consensus
Probab=98.17 E-value=1.6e-06 Score=80.71 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=92.9
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcc---------ccc
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQE---------RYH 104 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e---------~~~ 104 (373)
.......-+.++|- |||||+++++.....+. |...+. +...+... ..+-+.||.|-- .|.
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~--h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTL--HSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchh--hhccCCCC-cEEEEeechhhhhhCcHHHHHHHH
Confidence 33334445666664 99999999997766665 554443 34444322 235677998842 122
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe----EEEEEeCCCCC
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV----IALAGNKADLP 180 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----iilVgnK~Dl~ 180 (373)
+. -.-+..+|.++-|.|+++|..-+.....+.-+.. ...+..| ++=|-||.|..
T Consensus 250 AT-LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~---------------------igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 250 AT-LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQ---------------------IGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HH-HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHh---------------------cCCCcHHHHhHHHhhccccccc
Confidence 21 1225689999999999999876666665555554 2233333 45567777764
Q ss_pred CCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 181 TSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 181 ~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+. .++. +.++ .+.+||++|+|++++...+-..+.
T Consensus 308 ~~--~~e~-------E~n~--~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 308 ED--EVEE-------EKNL--DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cc--cCcc-------ccCC--ccccccccCccHHHHHHHHHHHhh
Confidence 42 1111 1222 577999999999999988766654
No 420
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.17 E-value=8.4e-07 Score=74.64 Aligned_cols=57 Identities=42% Similarity=0.647 Sum_probs=51.3
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|.+++|||+|++++..+.+...+.+|+| .++....+.+++..+.+.|||+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~D~~ 57 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIG--------VDFKSKTIEIDGKTVKLQIWDTA 57 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCcee--------eeeEEEEEEECCEEEEEEEEecC
Confidence 4789999999999999999999999999999999 77766777788899999999975
No 421
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.16 E-value=5.9e-07 Score=79.94 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=48.3
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|++++|||+|+++|+.+.|...|.+|++ ++..+.+.+++..+.++|||++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~l~i~D~~ 55 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE---------EMHRKEYEVGGVSLTLDILDTS 55 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh---------hheeEEEEECCEEEEEEEEECC
Confidence 689999999999999999999999999999987 3444667788999999999986
No 422
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.15 E-value=1e-06 Score=74.79 Aligned_cols=57 Identities=42% Similarity=0.553 Sum_probs=49.6
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++++.+.|...+.+|++ .++....+.+.+..+.+.+||..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~ 57 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQ--------ASFFQKTVNIGGKRIDLAIWDTA 57 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence 5899999999999999999999999888888988 55555666677889999999975
No 423
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.14 E-value=1e-06 Score=75.83 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=49.3
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++++.+.|...+.||+. ..+ ...+.+++..+.+++||+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~l~~~D~~ 56 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF--------DNY-SATVTVDGKQVNLGLWDTA 56 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------eee-EEEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999999888999987 445 3677788999999999975
No 424
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.14 E-value=8.4e-06 Score=70.21 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=36.7
Q ss_pred EEEEEeCCCcc----cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHH
Q psy18160 91 RFEIWDTAGQE----RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140 (373)
Q Consensus 91 ~l~i~Dt~G~e----~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~ 140 (373)
.+.|+||||.. ....++..++..+|++|+|.+.+...+-.+...+.+...
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 37789999963 334677888999999999999998665555555544443
No 425
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.13 E-value=9.2e-07 Score=80.20 Aligned_cols=52 Identities=33% Similarity=0.486 Sum_probs=43.0
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|+++||||+|+++|+.+.|.. +.||+| .+|..+.+ ..+.|.|||++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig--------~~~~~~~~----~~~~l~iwDt~ 52 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVG--------GAFYLKQW----GPYNISIWDTA 52 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccc--------eEEEEEEe----eEEEEEEEeCC
Confidence 589999999999999999999999975 689999 55542322 46789999997
No 426
>KOG0468|consensus
Probab=98.12 E-value=1.1e-05 Score=81.20 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=75.9
Q ss_pred CCCCcEEEEEEcC----ChhHHHHHhhhCcCcCc------------------ceeeeEEEEEEE-----ECCEEEEEEEE
Q psy18160 43 RQSDCMAQIWLKD----RVDCMTQIVINVVFYPY------------------LFSAAFITQTVC-----LDDVTIRFEIW 95 (373)
Q Consensus 43 ~~~~~i~ivvlG~----GKTsLl~rl~~~~~~~~------------------Tig~~~~~~~i~-----~~~~~v~l~i~ 95 (373)
.....++.+.+.| |||+|+.-+........ ..|......-+. .+++.+.+++.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3334455444444 99999998876533221 111111111111 25788899999
Q ss_pred eCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEe
Q psy18160 96 DTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGN 175 (373)
Q Consensus 96 Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgn 175 (373)
||+|+-.|..-....++-+|++++|+|+.+.-.++. ++.++.+.. ...|+++|.|
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq------------------------~~~~i~vviN 257 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ------------------------NRLPIVVVIN 257 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh------------------------ccCcEEEEEe
Confidence 999999998888888999999999999987766543 233333322 4789999999
Q ss_pred CCCCC
Q psy18160 176 KADLP 180 (373)
Q Consensus 176 K~Dl~ 180 (373)
|.|..
T Consensus 258 KiDRL 262 (971)
T KOG0468|consen 258 KVDRL 262 (971)
T ss_pred hhHHH
Confidence 99963
No 427
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2e-05 Score=82.23 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=74.5
Q ss_pred EEEEEEc--C-ChhHHHHHhhhCc--------------CcCc-----ceeeeEEEEEEEECCE-EEEEEEEeCCCccccc
Q psy18160 48 MAQIWLK--D-RVDCMTQIVINVV--------------FYPY-----LFSAAFITQTVCLDDV-TIRFEIWDTAGQERYH 104 (373)
Q Consensus 48 i~ivvlG--~-GKTsLl~rl~~~~--------------~~~~-----Tig~~~~~~~i~~~~~-~v~l~i~Dt~G~e~~~ 104 (373)
..+.+++ + |||||..+++-.. +.+. ..|.+.....+...-+ .+.++++||||+-.|.
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt 90 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT 90 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence 3444444 4 9999999997321 1111 2333333333333223 5789999999999999
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
.-....++-+|++++|+|+.+.-..+.-.-|.. +.+ .++|.+++.||+|....
T Consensus 91 ~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~~------------------------~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 91 IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-ADK------------------------YGVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hhh------------------------cCCCeEEEEECcccccc
Confidence 989999999999999999987544333333332 222 58899999999998654
No 428
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.11 E-value=3e-05 Score=69.91 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=85.7
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc--------cc---h
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT--------LA---P 108 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~--------l~---~ 108 (373)
.+|+++|. ||||++|.+++...... +...........+++.. +.++||||.-.... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 36889997 99999999998865433 12223333444677754 67999999532111 11 1
Q ss_pred hhccCCcEEEEEEECCCHhhHHHH--HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc-
Q psy18160 109 MYYRNAQAAIIVYDITNQDTFGRA--KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC- 185 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~Sf~~i--~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~- 185 (373)
....+.|+++||+.+. +-+-.+. .+++..+-. . .. -..++||.|..|.......
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG---~------------------~~-~k~~ivvfT~~d~~~~~~~~ 135 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFG---E------------------EI-WKHTIVVFTHADELEDDSLE 135 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHC---G------------------GG-GGGEEEEEEEGGGGTTTTHH
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHcc---H------------------HH-HhHhhHHhhhccccccccHH
Confidence 1245789999999998 3332222 223332211 0 00 1247788888886554110
Q ss_pred --cC---HHHHHHHHHHcCCeEEEEcCC------CCCCHHHHHHHHHHHcchh
Q psy18160 186 --VE---YSEGEAYAEENGLLFMETSAK------TAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 186 --v~---~~e~~~~~~~~~~~~~evSak------~~~gI~~lf~~L~~~i~~~ 227 (373)
+. .+..+++.+..+-.|...+.+ ....+.+|++.+-..+.++
T Consensus 136 ~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 136 DYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 11 122455667778888888877 2345777777776655543
No 429
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.09 E-value=1.5e-06 Score=76.54 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=49.6
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.|++++|++|+|||+|++++..+.|...+.+|++ .+|. ..+.+++..+.+.+||++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 57 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVF--------ENYV-TDCRVDGKPVQLALWDTA 57 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc--------ceEE-EEEEECCEEEEEEEEECC
Confidence 5899999999999999999999999999999998 5554 566778999999999987
No 430
>KOG0461|consensus
Probab=98.08 E-value=4.7e-05 Score=71.55 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=92.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhC----cCcCc--------ceeeeEEEEEEEE-----CCEEEEEEEEeCCCcccccccc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINV----VFYPY--------LFSAAFITQTVCL-----DDVTIRFEIWDTAGQERYHTLA 107 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~----~~~~~--------Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e~~~~l~ 107 (373)
..+.++|- |||+|.+++..- .|+.. |....|....+.. .++...+.++|++|+. +++
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---sLI 84 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---SLI 84 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---HHH
Confidence 67788886 999999999753 23322 3333333222221 3566788999999974 455
Q ss_pred hhhccC---CcEEEEEEECCCHhhHHHHHH-HHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-
Q psy18160 108 PMYYRN---AQAAIIVYDITNQDTFGRAKS-WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS- 182 (373)
Q Consensus 108 ~~~~~~---ad~iilv~D~~~~~Sf~~i~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~- 182 (373)
+..+.+ .|..++|+|+.....-+.++- .+.++ -....++|.||.|+..+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--------------------------~c~klvvvinkid~lpE~ 138 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--------------------------LCKKLVVVINKIDVLPEN 138 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--------------------------hccceEEEEeccccccch
Confidence 665554 478899999976443222221 11111 12356788888887543
Q ss_pred CcccCHHH-HHHHHHHc-------CCeEEEEcCCCC----CCHHHHHHHHHHHcchh
Q psy18160 183 RRCVEYSE-GEAYAEEN-------GLLFMETSAKTA----MNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 183 ~~~v~~~e-~~~~~~~~-------~~~~~evSak~~----~gI~~lf~~L~~~i~~~ 227 (373)
+|....++ +.+..+.+ +.|++++||+.| ++|.+|.+.|.+++.+-
T Consensus 139 qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 139 QRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred hhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 33333333 22233222 268999999999 78888888887777643
No 431
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.08 E-value=1.1e-06 Score=76.25 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=42.9
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|++++..+.|.. +.||+| .++. .+ ....++++|||++
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g--------~~~~--~~--~~~~~~~~l~Dt~ 61 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--------FNVE--TV--TYKNVKFNVWDVG 61 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcc--------cceE--EE--EECCEEEEEEECC
Confidence 4899999999999999999999888864 789999 4432 22 2356899999987
No 432
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.07 E-value=1e-06 Score=75.55 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=42.3
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|.+++|||+|+.|+..+.|. .|.||+| .++. .+. ...+.++|||++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g--------~~~~--~~~--~~~~~~~l~D~~ 52 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--------FNVE--TVE--YKNISFTVWDVG 52 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCC--------cceE--EEE--ECCEEEEEEECC
Confidence 48999999999999999999989997 4889999 4432 222 346889999986
No 433
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.06 E-value=1.6e-06 Score=75.59 Aligned_cols=56 Identities=34% Similarity=0.435 Sum_probs=49.1
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.|++++|.+|+|||+|++++..+.|...+.||++ ..+. +.+.+++..+.++|||+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~D~~ 57 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIE--------NTFS-KIIRYKGQDYHLEIVDTA 57 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchh--------hhEE-EEEEECCEEEEEEEEECC
Confidence 5899999999999999999999999999999998 4553 667788889999999963
No 434
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.06 E-value=1.2e-06 Score=77.07 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=43.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+.++..+.|.. +.||+| .++. .+ +...+.++|||++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~--------~~~~--~~--~~~~~~~~l~D~~ 69 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIG--------FNVE--TV--EYKNLKFTMWDVG 69 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccc--------cceE--EE--EECCEEEEEEECC
Confidence 4899999999999999999999888975 789999 4442 22 3356889999997
No 435
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.05 E-value=1.6e-06 Score=74.71 Aligned_cols=55 Identities=29% Similarity=0.452 Sum_probs=44.4
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.|++++|++++|||+|+++|..+.|...+.+|.. ++. ....+++..++++|||++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~i~Dt~ 55 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP---------EIT-IPADVTPERVPTTIVDTS 55 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc---------ceE-eeeeecCCeEEEEEEeCC
Confidence 3889999999999999999999999877655443 332 344567889999999987
No 436
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.05 E-value=8.3e-05 Score=71.95 Aligned_cols=75 Identities=13% Similarity=0.002 Sum_probs=48.9
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEE---------------EEEEEEeCCCccccc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVT---------------IRFEIWDTAGQERYH 104 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~---------------v~l~i~Dt~G~e~~~ 104 (373)
+++.++|- |||||+|++++...... |+.... ..+.+.+.. ..+.+.|+||..+-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~--G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV--GVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE--EEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 57888886 99999999998773222 444332 233333321 358999999964321
Q ss_pred ----ccchh---hccCCcEEEEEEECC
Q psy18160 105 ----TLAPM---YYRNAQAAIIVYDIT 124 (373)
Q Consensus 105 ----~l~~~---~~~~ad~iilv~D~~ 124 (373)
.+... .++.+|++++|+|..
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12222 367899999999984
No 437
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.04 E-value=1.6e-06 Score=76.16 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=43.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+.++..+.|. .+.||+| .++. . ++...+.++|||++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g--------~~~~--~--~~~~~~~~~i~D~~ 69 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--------FNVE--T--VEYKNISFTVWDVG 69 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcc--------eeEE--E--EEECCEEEEEEECC
Confidence 489999999999999999999988886 4789999 4442 2 23456899999986
No 438
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.03 E-value=2.6e-05 Score=74.75 Aligned_cols=105 Identities=14% Similarity=0.035 Sum_probs=64.1
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
.+.+.|.||+|...-. ......||.++++.+....+....+. ..+.+ +
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E--------------------------~ 195 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME--------------------------L 195 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh--------------------------h
Confidence 3567889999865222 12466799999997644444333322 21222 1
Q ss_pred eEEEEEeCCCCCCCCc-ccCHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 169 VIALAGNKADLPTSRR-CVEYSEGEAYAEE-------NGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 169 piilVgnK~Dl~~~~~-~v~~~e~~~~~~~-------~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.-++|.||+|+..... .....+....... +..+++.+||+++.||+++++.|.+.+.
T Consensus 196 aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 196 ADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2389999999875311 0111122222221 1247999999999999999999988654
No 439
>KOG0096|consensus
Probab=98.02 E-value=4.6e-06 Score=71.91 Aligned_cols=60 Identities=25% Similarity=0.407 Sum_probs=52.6
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCe-EEEEEehhhHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN-NVPITFVWVIM 363 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~-~~~l~iw~~~~ 363 (373)
...+|++++|+++.||++++.|.+.++|...|.+|+| ++.+ .++.-.+. .|++..||.|.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~G--------v~~~-pl~f~tn~g~irf~~wdtag 68 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLG--------VEVH-PLLFDTNRGQIRFNVWDTAG 68 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcce--------eEEe-eeeeecccCcEEEEeeeccc
Confidence 4579999999999999999999999999999999999 6765 66655655 49999999985
No 440
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.01 E-value=1.8e-06 Score=75.25 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=42.9
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+.++..+.|. .+.||+| .++. .+.. ..++++|||++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~--------~~~~--~~~~--~~~~l~l~D~~ 65 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIG--------FNVE--TVTY--KNISFTVWDVG 65 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccc--------cceE--EEEE--CCEEEEEEECC
Confidence 589999999999999999999988885 5889999 4442 2222 45899999987
No 441
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.97 E-value=3e-05 Score=73.69 Aligned_cols=104 Identities=18% Similarity=0.047 Sum_probs=62.2
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
.+.+.|.||+|.-.. ....+..+|.++++-+. .+-+++..+...+ .+.
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l--------------------------~~~ 173 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIP---GTGDDLQGIKAGL--------------------------MEI 173 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecC---CccHHHHHHHHHH--------------------------hhh
Confidence 456778898874311 12245667888877443 3334444433322 245
Q ss_pred eEEEEEeCCCCCCCCcccCH-H-H----HHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 169 VIALAGNKADLPTSRRCVEY-S-E----GEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 169 piilVgnK~Dl~~~~~~v~~-~-e----~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
|.++|.||+|+..... ... . + ...+... +..+++++||+++.|+++++++|.+.+.
T Consensus 174 ~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 174 ADIYVVNKADGEGATN-VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred ccEEEEEcccccchhH-HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 6799999999875411 100 0 0 0111111 2246899999999999999999987643
No 442
>KOG1532|consensus
Probab=97.97 E-value=9.9e-05 Score=67.53 Aligned_cols=115 Identities=15% Similarity=0.220 Sum_probs=66.5
Q ss_pred EEEEEEeCCCccc-ccc-----cchhhcc--CCcEEEEEEECC---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHH
Q psy18160 90 IRFEIWDTAGQER-YHT-----LAPMYYR--NAQAAIIVYDIT---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVK 158 (373)
Q Consensus 90 v~l~i~Dt~G~e~-~~~-----l~~~~~~--~ad~iilv~D~~---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~ 158 (373)
....++|||||-+ |.. ++...++ ...++++++|.. ++.+|-.-.-|.--+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi------------------- 176 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI------------------- 176 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH-------------------
Confidence 4577899999843 221 2222222 345777888864 344554322222111
Q ss_pred hhhhcCCCCCeEEEEEeCCCCCCCCcc---cC----HHHHHH---------HHHH---------cCCeEEEEcCCCCCCH
Q psy18160 159 ELQRMAPPNIVIALAGNKADLPTSRRC---VE----YSEGEA---------YAEE---------NGLLFMETSAKTAMNV 213 (373)
Q Consensus 159 ~~~~~~~~~~piilVgnK~Dl~~~~~~---v~----~~e~~~---------~~~~---------~~~~~~evSak~~~gI 213 (373)
......|.|+|.||+|+.+..-. .+ .+++.+ +.+. .++..+-|||.+|.|.
T Consensus 177 ----lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 177 ----LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred ----HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 12357899999999999765211 00 111111 0000 1356899999999999
Q ss_pred HHHHHHHHHHcchh
Q psy18160 214 NEIFVEIAKKLPKK 227 (373)
Q Consensus 214 ~~lf~~L~~~i~~~ 227 (373)
+++|..+...+.+.
T Consensus 253 ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 253 DDFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987766543
No 443
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.96 E-value=2.3e-06 Score=74.07 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=41.8
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|.+++|||+|++++..+.|.. |.||+| .++. . ++...+.++|||++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~--------~~~~--~--~~~~~~~i~l~Dt~ 51 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIG--------FNVE--T--VEYKNLKFTIWDVG 51 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--------eeEE--E--EEECCEEEEEEECC
Confidence 57999999999999999999998875 899999 5552 2 23356889999987
No 444
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.95 E-value=5.3e-05 Score=69.40 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=44.4
Q ss_pred EEEEEEeCCCcccc-------------cccchhhcc-CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccch
Q psy18160 90 IRFEIWDTAGQERY-------------HTLAPMYYR-NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKS 155 (373)
Q Consensus 90 v~l~i~Dt~G~e~~-------------~~l~~~~~~-~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~ 155 (373)
..|.++||||.... ..+...|++ ..+.+++|+|++..-.-.+..++...+..
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-------------- 190 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-------------- 190 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--------------
Confidence 46888999997421 224566777 45689999988653322222233333322
Q ss_pred hHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 156 WVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 156 ~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
...|+++|.||.|..+.
T Consensus 191 ----------~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 191 ----------QGERTIGVITKLDLMDE 207 (240)
T ss_pred ----------cCCcEEEEEECCCCCCc
Confidence 46799999999998753
No 445
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.95 E-value=3e-06 Score=71.73 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=47.5
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
|++++|++++|||+|+++++.+.|...+.||.+ ..+ .+.+.+++..++++|||+.-
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~l~D~~g 56 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE--------DSY-RKTIVVDGETYTLDILDTAG 56 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh--------HeE-EEEEEECCEEEEEEEEECCC
Confidence 689999999999999999999889999999988 233 35566788899999999764
No 446
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.95 E-value=4.8e-06 Score=69.61 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=49.7
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|.+++|||+|++++..+.+...+.+|++ .++....+..++..+.+.+||+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~ 58 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTT--------RNYVTTVIEEDGKTYKFNLLDTA 58 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCce--------eeeeEEEEEECCEEEEEEEEECC
Confidence 6899999999999999999999988888999999 66665556778888999999975
No 447
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=9.6e-05 Score=71.64 Aligned_cols=124 Identities=16% Similarity=0.065 Sum_probs=77.5
Q ss_pred EEEEEEcC-ChhHHHHHhhhC----------------cCcCc-------ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 48 MAQIWLKD-RVDCMTQIVINV----------------VFYPY-------LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 48 i~ivvlG~-GKTsLl~rl~~~----------------~~~~~-------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
..|+.--+ |||||..+++-- .+..+ -.|....+-.+.++-..+.++|.||||++.|
T Consensus 15 FAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDF 94 (528)
T COG4108 15 FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDF 94 (528)
T ss_pred eeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcccc
Confidence 34444445 999999998621 12221 2333333334444444567889999999999
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR 183 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~ 183 (373)
..-....+.-+|.++.|.|+...---+. .+.++-.+ ..++||+-..||.|....
T Consensus 95 SEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr------------------------lR~iPI~TFiNKlDR~~r- 148 (528)
T COG4108 95 SEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR------------------------LRDIPIFTFINKLDREGR- 148 (528)
T ss_pred chhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh------------------------hcCCceEEEeeccccccC-
Confidence 8877777888999999999875322111 12233222 378999999999997653
Q ss_pred cccCHHHHHHHHHHcC
Q psy18160 184 RCVEYSEGEAYAEENG 199 (373)
Q Consensus 184 ~~v~~~e~~~~~~~~~ 199 (373)
-+.+-..+..+.++
T Consensus 149 --dP~ELLdEiE~~L~ 162 (528)
T COG4108 149 --DPLELLDEIEEELG 162 (528)
T ss_pred --ChHHHHHHHHHHhC
Confidence 23333344444444
No 448
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.86 E-value=0.0002 Score=69.43 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=76.4
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceee---eEEEEEEEECCEEEEEEEEeCCCcccccccchhh-----cc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSA---AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMY-----YR 112 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~---~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~-----~~ 112 (373)
.+.|+|.|. |||||+|.+.+-...+. ..|+ +.....+.. .+.-.+.+||.||...-..-...| +.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 478999997 99999999976432221 1111 111111111 222247899999964333323333 45
Q ss_pred CCcEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC--C----CCcc
Q psy18160 113 NAQAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP--T----SRRC 185 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~--~----~~~~ 185 (373)
..|.+|++.+-. |.... .....+.+ .+.|..+|-+|.|.. . ..+.
T Consensus 114 ~yD~fiii~s~r----f~~ndv~La~~i~~------------------------~gK~fyfVRTKvD~Dl~~~~~~~p~~ 165 (376)
T PF05049_consen 114 RYDFFIIISSER----FTENDVQLAKEIQR------------------------MGKKFYFVRTKVDSDLYNERRRKPRT 165 (376)
T ss_dssp G-SEEEEEESSS------HHHHHHHHHHHH------------------------TT-EEEEEE--HHHHHHHHHCC-STT
T ss_pred ccCEEEEEeCCC----CchhhHHHHHHHHH------------------------cCCcEEEEEecccccHhhhhccCCcc
Confidence 789988887742 33332 23344544 477999999999961 1 0112
Q ss_pred cCHHH----HHHHHH----HcCC---eEEEEcCCCC--CCHHHHHHHHHHHcchh
Q psy18160 186 VEYSE----GEAYAE----ENGL---LFMETSAKTA--MNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 186 v~~~e----~~~~~~----~~~~---~~~evSak~~--~gI~~lf~~L~~~i~~~ 227 (373)
-..++ +++-+. +.|+ ++|-+|+.+- .+...|.+.|.+.+...
T Consensus 166 f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 166 FNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp --HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 22222 222222 1233 5899999854 46888989998888754
No 449
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.85 E-value=5.9e-06 Score=71.64 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=42.2
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|++++..+.+ ..+.||+| ..+ +.+.++ .+.++|||++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--------~~~--~~~~~~--~~~l~l~D~~ 66 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--------FQI--KTLEYE--GYKLNIWDVG 66 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--------cce--EEEEEC--CEEEEEEECC
Confidence 347999999999999999999997744 56889998 222 344445 4789999987
No 450
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.82 E-value=4.9e-06 Score=70.83 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=40.6
Q ss_pred EEEEEccCccccceeeEEeeeCc-ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+++++|++++|||+|++++..+. +...|.||+| ..+. . ++...++++|||++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--------~~~~--~--~~~~~~~~~l~Dt~ 53 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--------FNVE--S--FEKGNLSFTAFDMS 53 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--------cceE--E--EEECCEEEEEEECC
Confidence 47899999999999999999876 5778999999 2221 1 12356889999985
No 451
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00014 Score=67.11 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=93.9
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhC---c-------Cc-----Cc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINV---V-------FY-----PY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~---~-------~~-----~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
...++.+..+|- |||||...++.. . |. +. ..|++.....+++.-.....-..|++|+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 445788888886 999999877632 1 11 11 4444444555555433444567899999877
Q ss_pred cccchhhccCCcEEEEEEECCCHh---hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC-eEEEEEeCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQD---TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI-VIALAGNKADL 179 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~---Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-piilVgnK~Dl 179 (373)
-.-.-.-....|+.|||++++|.. +-+++. ..+. -.+ .++++.||+|+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL----larq------------------------vGvp~ivvflnK~Dm 140 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL----LARQ------------------------VGVPYIVVFLNKVDM 140 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh----hhhh------------------------cCCcEEEEEEecccc
Confidence 543223345789999999998843 333332 0111 234 58888999999
Q ss_pred CCCCcc--cCHHHHHHHHHHcCC-----eEEEEcCCCCC--------CHHHHHHHHHHHcc
Q psy18160 180 PTSRRC--VEYSEGEAYAEENGL-----LFMETSAKTAM--------NVNEIFVEIAKKLP 225 (373)
Q Consensus 180 ~~~~~~--v~~~e~~~~~~~~~~-----~~~evSak~~~--------gI~~lf~~L~~~i~ 225 (373)
.++... .-..|..++...+++ |++.-||...- .|.+|++.+.+.+.
T Consensus 141 vdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 141 VDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 874221 123356677778875 46666665322 35666666666554
No 452
>KOG1424|consensus
Probab=97.79 E-value=3.9e-05 Score=75.67 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=49.9
Q ss_pred ccCCcEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 111 YRNAQAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
+..+|++|.++|+.++-=|. ++.+|..++. +....+|+.||+||... ...
T Consensus 172 lErSDivvqIVDARnPllfr~~dLe~Yvke~d-------------------------~~K~~~LLvNKaDLl~~---~qr 223 (562)
T KOG1424|consen 172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-------------------------PSKANVLLVNKADLLPP---EQR 223 (562)
T ss_pred HhhcceEEEEeecCCccccCChhHHHHHhccc-------------------------cccceEEEEehhhcCCH---HHH
Confidence 56899999999999986443 4445544432 34568999999999653 122
Q ss_pred HHHHHHHHHcCCeEEEEcCCC
Q psy18160 189 SEGEAYAEENGLLFMETSAKT 209 (373)
Q Consensus 189 ~e~~~~~~~~~~~~~evSak~ 209 (373)
....++....+++++.-||..
T Consensus 224 ~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 224 VAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHHHHHHHhcCceEEEEeccc
Confidence 234455667789999999986
No 453
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.78 E-value=0.00023 Score=68.02 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=93.9
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----------------ceeeeEEEEEEEECCEE--------------
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----------------LFSAAFITQTVCLDDVT-------------- 89 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----------------Tig~~~~~~~i~~~~~~-------------- 89 (373)
....+.+.+.|- |||||+-.+..+..++. ....+.....+-+++..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 445677777776 99999988877655443 11112222333332211
Q ss_pred -------EEEEEEeCCCcccccc--cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160 90 -------IRFEIWDTAGQERYHT--LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKEL 160 (373)
Q Consensus 90 -------v~l~i~Dt~G~e~~~~--l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 160 (373)
-.+.+.||.|+|+|-. ++-..-...|..++++.+++..+-.. ++-+-.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~--------------------- 251 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIA--------------------- 251 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhh---------------------
Confidence 2467899999998854 23333457899999999988654211 1111111
Q ss_pred hhcCCCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHH----------------------HcC---CeEEEEcCCCCCCHH
Q psy18160 161 QRMAPPNIVIALAGNKADLPTSRRC-VEYSEGEAYAE----------------------ENG---LLFMETSAKTAMNVN 214 (373)
Q Consensus 161 ~~~~~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~----------------------~~~---~~~~evSak~~~gI~ 214 (373)
..-..|+++|.+|+|+.++.+. -..+++.++.+ +.+ .|+|.+|+.+|+|++
T Consensus 252 ---~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld 328 (527)
T COG5258 252 ---LAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD 328 (527)
T ss_pred ---hhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH
Confidence 2247899999999999765221 11122222211 111 489999999999986
Q ss_pred HHHHHHHHHcchh
Q psy18160 215 EIFVEIAKKLPKK 227 (373)
Q Consensus 215 ~lf~~L~~~i~~~ 227 (373)
-|. ++...++.+
T Consensus 329 lL~-e~f~~Lp~r 340 (527)
T COG5258 329 LLD-EFFLLLPKR 340 (527)
T ss_pred HHH-HHHHhCCcc
Confidence 554 444455544
No 454
>KOG1486|consensus
Probab=97.77 E-value=0.0034 Score=56.96 Aligned_cols=197 Identities=14% Similarity=0.110 Sum_probs=117.1
Q ss_pred hhhhhhhhhhhccCCCCccccccCC----CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC
Q psy18160 18 ALTVRVLKLKTQIPKGNWFSMMSGK----RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD 87 (373)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~ 87 (373)
+|+....++|+|+-.....+-.++. .++..-+++++|= |||||+..++...-... -...+...-.++++|
T Consensus 29 lLKaKlAkyR~qLlep~~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g 108 (364)
T KOG1486|consen 29 LLKAKLAKYRQQLLEPTKGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG 108 (364)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC
Confidence 5667777888887554433332221 2445567888885 99999999986543322 111123344566776
Q ss_pred EEEEEEEEeCCCccccccc-------chhhccCCcEEEEEEECCCHhhHHHH-HHHHHHHHhh---CCCCC---------
Q psy18160 88 VTIRFEIWDTAGQERYHTL-------APMYYRNAQAAIIVYDITNQDTFGRA-KSWVKELQRM---APPNI--------- 147 (373)
Q Consensus 88 ~~v~l~i~Dt~G~e~~~~l-------~~~~~~~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~---~~~~~--------- 147 (373)
- .+++.|.||.-+-.+. .-...+.||.++.|.|.+..+.-..+ ++-++.+--. ..+++
T Consensus 109 a--~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gG 186 (364)
T KOG1486|consen 109 A--NIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGG 186 (364)
T ss_pred c--eEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCC
Confidence 4 5789999985332221 12346789999999999876543322 2222322110 11111
Q ss_pred ---------------------------------CcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160 148 ---------------------------------DTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194 (373)
Q Consensus 148 ---------------------------------~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~ 194 (373)
..-.....+++-+. -...-++++-|-||+|. ++.++..++
T Consensus 187 i~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~-gnr~Y~~ClYvYnKID~------vs~eevdrl 259 (364)
T KOG1486|consen 187 ISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIE-GNRVYIKCLYVYNKIDQ------VSIEEVDRL 259 (364)
T ss_pred eEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHh-ccceEEEEEEEeeccce------ecHHHHHHH
Confidence 00011112222221 12224788999999995 678899999
Q ss_pred HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
|+..+- +-+|+.-..|++.+++.+-+.+.
T Consensus 260 Ar~Pns--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 260 ARQPNS--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred hcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence 987663 44688888899999998877764
No 455
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.76 E-value=9.8e-06 Score=68.15 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=41.9
Q ss_pred EEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 300 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
++++|++|+|||+|++++...+|...+.||+| .++. .+..++ +.+.+||++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~--~~~~~~--~~~~~~D~~ 52 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVG--------FNMR--KVTKGN--VTLKVWDLG 52 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCC--------cceE--EEEECC--EEEEEEECC
Confidence 68999999999999999999999999999999 4442 222333 789999985
No 456
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.76 E-value=6.8e-06 Score=70.99 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=40.3
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+++++|.+++|||+|++++..+ |...|.||+| ... +.+.. ..++++|||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g--------~~~--~~~~~--~~~~~~i~D~~ 51 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVG--------FTP--TKLRL--DKYEVCIFDLG 51 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCccc--------ceE--EEEEE--CCEEEEEEECC
Confidence 3689999999999999999866 8889999999 321 23333 45889999986
No 457
>KOG1954|consensus
Probab=97.74 E-value=0.00024 Score=67.49 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=72.7
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCccee----eeEEEEEEEE------CCEE--------------------
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPYLFS----AAFITQTVCL------DDVT-------------------- 89 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~Tig----~~~~~~~i~~------~~~~-------------------- 89 (373)
.-.....++++|. ||||+++.+++.+|..-.+| .++....+.- +|..
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 3345567888887 99999999999988755222 2332222221 1111
Q ss_pred -------------EEEEEEeCCCcc-----------cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCC
Q psy18160 90 -------------IRFEIWDTAGQE-----------RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP 145 (373)
Q Consensus 90 -------------v~l~i~Dt~G~e-----------~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~ 145 (373)
-.+.|+||+|.- .|.....-|...+|.|+++||.-..+--++..+.+..++.
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---- 209 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---- 209 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----
Confidence 147789999942 2333455577899999999997654433344444444433
Q ss_pred CCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
..-.+-||.||+|..+.
T Consensus 210 --------------------~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 210 --------------------HEDKIRVVLNKADQVDT 226 (532)
T ss_pred --------------------CcceeEEEeccccccCH
Confidence 34467889999997553
No 458
>KOG1143|consensus
Probab=97.74 E-value=0.00021 Score=67.96 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=92.3
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--------------------------ceeeeEEEEEEEECC-------
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--------------------------LFSAAFITQTVCLDD------- 87 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------------------------Tig~~~~~~~i~~~~------- 87 (373)
+.-.++++++|+ |||||+--+..++.+.. ++|.+-..+.+.+..
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 344578999999 99999987776654332 444443334443322
Q ss_pred ---EEEEEEEEeCCCcccccccchhhcc--CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160 88 ---VTIRFEIWDTAGQERYHTLAPMYYR--NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQR 162 (373)
Q Consensus 88 ---~~v~l~i~Dt~G~e~~~~l~~~~~~--~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
..-.+.++|.+|+.+|....-.-+. ..|.+++|+++...-... -++-+..+..
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A--------------------- 301 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA--------------------- 301 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---------------------
Confidence 1235789999999988765433333 368889999886543211 1112222222
Q ss_pred cCCCCCeEEEEEeCCCCCCCC-----------------------cccCHHHHHHHHHHc----CCeEEEEcCCCCCCHHH
Q psy18160 163 MAPPNIVIALAGNKADLPTSR-----------------------RCVEYSEGEAYAEEN----GLLFMETSAKTAMNVNE 215 (373)
Q Consensus 163 ~~~~~~piilVgnK~Dl~~~~-----------------------~~v~~~e~~~~~~~~----~~~~~evSak~~~gI~~ 215 (373)
-++|.+++.+|.|+.+.+ +.-+.+++...+.+. =.|+|.+|+.+|++++-
T Consensus 302 ---L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 302 ---LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred ---hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence 478999999999997641 112233343333332 24799999999999765
Q ss_pred HH
Q psy18160 216 IF 217 (373)
Q Consensus 216 lf 217 (373)
+-
T Consensus 379 l~ 380 (591)
T KOG1143|consen 379 LR 380 (591)
T ss_pred HH
Confidence 43
No 459
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.72 E-value=1.1e-05 Score=65.20 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=40.8
Q ss_pred EEEEEccCccccceeeEEeeeCccc--ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFH--EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~--~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|+.|+|||+|+.+++.+.+. ..+.++-+ ..+......+++....+.|||++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~d~~ 58 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSE--------ITIGVDVIVVDGDRQSLQFWDFG 58 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTT--------SCEEEEEEEETTEEEEEEEEEES
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCC--------CcEEEEEEEecCCceEEEEEecC
Confidence 6899999999999999999998887 23444444 34444566778888889999987
No 460
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.71 E-value=1.9e-05 Score=67.69 Aligned_cols=33 Identities=24% Similarity=0.103 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~ 221 (373)
++..+..+..|++++.+|++++++++++.+.+.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~ 34 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLK 34 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc
Confidence 456677889999999999999999999988764
No 461
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.69 E-value=1e-05 Score=68.89 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=40.2
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|++++|||+|++++..+.+.. +.||+| .++. .+ +...++++|||++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~--------~~~~--~~--~~~~~~~~i~Dt~ 51 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIG--------FNVE--TV--TYKNLKFQVWDLG 51 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccC--------cCeE--EE--EECCEEEEEEECC
Confidence 57899999999999999998888764 678998 3332 22 3356889999987
No 462
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.69 E-value=0.00095 Score=62.79 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=69.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc-------------ceeeeEEEEEEEECCEEEEEEEEeCCCccc--------
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY-------------LFSAAFITQTVCLDDVTIRFEIWDTAGQER-------- 102 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-------- 102 (373)
.+.++|+|. |||||+|.|++...... +.........+.-++..+.+.++||+|-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 367888897 99999999998643332 233333334445578899999999999321
Q ss_pred ----------cccc-------chhhc--cCCcEEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160 103 ----------YHTL-------APMYY--RNAQAAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQR 162 (373)
Q Consensus 103 ----------~~~l-------~~~~~--~~ad~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
|... .+.-. ...|+++++.+.+.. -+-.++ +.+..+.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls---------------------- 140 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS---------------------- 140 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----------------------
Confidence 1000 00001 246899999998652 222233 2333333
Q ss_pred cCCCCCeEEEEEeCCCCCCCCcc-cCHHHHHHHHHHcCCeEEEEc
Q psy18160 163 MAPPNIVIALAGNKADLPTSRRC-VEYSEGEAYAEENGLLFMETS 206 (373)
Q Consensus 163 ~~~~~~piilVgnK~Dl~~~~~~-v~~~e~~~~~~~~~~~~~evS 206 (373)
..+++|=|..|+|....... .-.+.+.+-.+.+++++|...
T Consensus 141 ---~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 141 ---KRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp ---TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S----
T ss_pred ---ccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccc
Confidence 35778889999997542100 001112333455677766543
No 463
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.68 E-value=2.3e-05 Score=73.59 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=48.2
Q ss_pred cceEEEEEccCccccceeeEEeeeCccccc----------ccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEY----------QESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~----------~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..++++++|++|+|||||+++++...+... +.+|++ ++.....+..+|.+++|.|||++
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~--------i~~~~~~i~~~g~~~~l~iiDTp 71 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVE--------IKSSKAEIEENGVKLKLTVIDTP 71 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceE--------EEEEEEEEEECCEEEEEEEEecC
Confidence 468999999999999999999998876543 466776 56655666678999999999985
No 464
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.67 E-value=0.00026 Score=66.19 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=46.6
Q ss_pred EEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCccccc---
Q psy18160 51 IWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQERYH--- 104 (373)
Q Consensus 51 vvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e~~~--- 104 (373)
.++|- |||||+|++++...... |+.... ..+.+.+. ...++++|+||..+-.
T Consensus 2 givG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~--g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 2 GIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV--GIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred eEeCCCCCcHHHHHHHHhCCCCccccccccchhcee--eeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 56665 99999999999876432 444332 33344432 2358999999964321
Q ss_pred -ccchhh---ccCCcEEEEEEECC
Q psy18160 105 -TLAPMY---YRNAQAAIIVYDIT 124 (373)
Q Consensus 105 -~l~~~~---~~~ad~iilv~D~~ 124 (373)
.+...+ ++.+|++++|+|..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 222233 57899999999873
No 465
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.64 E-value=2e-05 Score=68.51 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=42.7
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.+|++++|.+++|||+|++++..+.|.. +.||+|.+ +. .+.++ .+.+.|||++-
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~--------~~--~~~~~--~~~~~l~D~~G 68 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSN--------VE--EIVYK--NIRFLMWDIGG 68 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccc--------eE--EEEEC--CeEEEEEECCC
Confidence 4799999999999999999999998886 68999933 32 22233 58899999863
No 466
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.59 E-value=2e-05 Score=67.00 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=40.8
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+++++|++++|||+|+++|..+.|.. +.||+| .++ +.+.+ +..+.|.|||++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~--------~~~--~~~~~-~~~~~l~i~D~~ 52 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVG--------FNV--EMLQL-EKHLSLTVWDVG 52 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccC--------cce--EEEEe-CCceEEEEEECC
Confidence 47899999999999999999998875 468998 333 23333 356899999986
No 467
>KOG0467|consensus
Probab=97.58 E-value=0.00023 Score=73.07 Aligned_cols=77 Identities=10% Similarity=0.151 Sum_probs=57.4
Q ss_pred EEEcC-ChhHHHHHhhhCc------------CcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc
Q psy18160 51 IWLKD-RVDCMTQIVINVV------------FYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR 112 (373)
Q Consensus 51 vvlG~-GKTsLl~rl~~~~------------~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~ 112 (373)
+.-.+ |||||...++-.. |.+. |.|.+...-.+..-.+.+.+.++|+||+-.|.+......+
T Consensus 15 vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~ 94 (887)
T KOG0467|consen 15 VAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASR 94 (887)
T ss_pred EEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhh
Confidence 33334 9999998886432 2222 6666555555555456788999999999999999999999
Q ss_pred CCcEEEEEEECCCHh
Q psy18160 113 NAQAAIIVYDITNQD 127 (373)
Q Consensus 113 ~ad~iilv~D~~~~~ 127 (373)
=+|++++++|+...-
T Consensus 95 l~d~alvlvdvvegv 109 (887)
T KOG0467|consen 95 LSDGALVLVDVVEGV 109 (887)
T ss_pred hcCCcEEEEeecccc
Confidence 999999999997643
No 468
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.58 E-value=2.6e-05 Score=68.55 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=42.0
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..|++++|++++|||+|++++..+.+. .|.||++ .. ...+.+++ +.+++||++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~--------~~--~~~i~~~~--~~~~l~D~~ 71 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH--------PT--SEELTIGN--IKFKTFDLG 71 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccC--------cc--eEEEEECC--EEEEEEECC
Confidence 478999999999999999999988874 6889988 22 23445565 678899984
No 469
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0029 Score=60.79 Aligned_cols=162 Identities=12% Similarity=0.028 Sum_probs=92.7
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEE----------C-C---EEEEEEEEeCCCcc----
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCL----------D-D---VTIRFEIWDTAGQE---- 101 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~----------~-~---~~v~l~i~Dt~G~e---- 101 (373)
+++.++|= |||||+|.++...-... ||........+.. . + ....++++|++|.-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 46677775 99999999998873322 6666554333221 1 1 24578999998853
Q ss_pred cccccchhh---ccCCcEEEEEEECCCH-------------hh------------HHHHHH-HHHHHHhhCCCC---C--
Q psy18160 102 RYHTLAPMY---YRNAQAAIIVYDITNQ-------------DT------------FGRAKS-WVKELQRMAPPN---I-- 147 (373)
Q Consensus 102 ~~~~l~~~~---~~~ad~iilv~D~~~~-------------~S------------f~~i~~-~l~~i~~~~~~~---~-- 147 (373)
+-..+...| +|.+|+++.|+|..+. .. ++.+++ |-...++..... .
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~~ 162 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKEL 162 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 334455555 6789999999997631 01 111111 111111111110 0
Q ss_pred ------------------Cccc-ccchhHHh----hh-hcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160 148 ------------------DTFG-RAKSWVKE----LQ-RMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM 203 (373)
Q Consensus 148 ------------------~~~~-~~~~~~~~----~~-~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~ 203 (373)
+... ....|..+ +. -......|+++++||.|........-.+...+++...+.+++
T Consensus 163 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV 242 (372)
T COG0012 163 KEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVV 242 (372)
T ss_pred HHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEE
Confidence 1110 22234433 22 123356899999999998654111115567778888888999
Q ss_pred EEcCCC
Q psy18160 204 ETSAKT 209 (373)
Q Consensus 204 evSak~ 209 (373)
.+||+-
T Consensus 243 ~~sA~~ 248 (372)
T COG0012 243 PVSAAI 248 (372)
T ss_pred EeeHHH
Confidence 999873
No 470
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.47 E-value=0.00086 Score=62.91 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCCCCCCcccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 168 IVIALAGNKADLPTSRRCVEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 168 ~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.+-++|.||+|+.+. .....++..+..+.. ..+++++||++|+|++++.++|..+
T Consensus 231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999652 112344444444443 4789999999999999999999763
No 471
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.46 E-value=2.6e-05 Score=69.07 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=44.7
Q ss_pred EEEEEccCccccceeeEEeee--Ccccccc------------cCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR--GQFHEYQ------------ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~--~~f~~~~------------~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+++++|.+++|||+|+++|+. +.|...+ .++.| .++..+.+.++...+.++|||++
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g--------~t~~~~~~~~~~~~~~~~l~Dtp 73 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERG--------ITILAKNTAVTYKDTKINIVDTP 73 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcc--------cccccceeEEEECCEEEEEEECC
Confidence 689999999999999999997 6776654 34566 55555666677788999999987
No 472
>KOG0082|consensus
Probab=97.43 E-value=0.00062 Score=65.30 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=85.7
Q ss_pred ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh--HH--------HHHHHHHHHHhh
Q psy18160 73 LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT--FG--------RAKSWVKELQRM 142 (373)
Q Consensus 73 Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S--f~--------~i~~~l~~i~~~ 142 (373)
|.|+. ...+.+.+ ..+.+.|++||-.-+.-|-+++.+++++|||.++++-+. ++ +..+.++.+.+
T Consensus 182 T~GI~--e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n- 256 (354)
T KOG0082|consen 182 TTGIV--EVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN- 256 (354)
T ss_pred cCCee--EEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc-
Confidence 55543 33444544 678899999997777778889999999999999986331 11 11223333333
Q ss_pred CCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------cccCHHHHHHHHHH-----c-----
Q psy18160 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------RCVEYSEGEAYAEE-----N----- 198 (373)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~~v~~~e~~~~~~~-----~----- 198 (373)
...-.+.++||..||.||-.+. ..-..+++..+.+. +
T Consensus 257 -------------------~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k 317 (354)
T KOG0082|consen 257 -------------------NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDK 317 (354)
T ss_pred -------------------CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCC
Confidence 1233578999999999985431 11234444433221 1
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
.+-+..+.|.+-.+|+.+|..+...+....
T Consensus 318 ~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 318 KIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred cceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 123566788888999999999988876543
No 473
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.42 E-value=6e-05 Score=66.20 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=40.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|.+++|||+|++++..+.|. .+.||++. .. ..+.++ .+++.+||++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~--------~~--~~~~~~--~~~~~~~D~~ 69 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHP--------TS--EELAIG--NIKFTTFDLG 69 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCcccc--------ce--EEEEEC--CEEEEEEECC
Confidence 479999999999999999999988775 46788872 11 233344 3778899986
No 474
>KOG2486|consensus
Probab=97.38 E-value=0.00014 Score=66.77 Aligned_cols=150 Identities=9% Similarity=0.052 Sum_probs=87.7
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCc----------ccccc
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQ----------ERYHT 105 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~----------e~~~~ 105 (373)
+..+.+.++++|+ |||||+|-++..+-... +.|.+.......++. .+.+.|.+|- +.+..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhH
Confidence 3456689999998 99999999987654433 344333233333333 4567899882 34445
Q ss_pred cchhhccC---CcEEEEEEECCCHhh-HH-HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160 106 LAPMYYRN---AQAAIIVYDITNQDT-FG-RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180 (373)
Q Consensus 106 l~~~~~~~---ad~iilv~D~~~~~S-f~-~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 180 (373)
+...|+.+ --.++++.|++-+-. -+ ...+|+. ..++|+.+|.||+|..
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g---------------------------e~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG---------------------------ENNVPMTSVFTKCDKQ 261 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh---------------------------hcCCCeEEeeehhhhh
Confidence 55566543 334555566554321 11 1123322 2588999999999974
Q ss_pred CCCc---ccCHHHHHH----HH---HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 181 TSRR---CVEYSEGEA----YA---EENGLLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 181 ~~~~---~v~~~e~~~----~~---~~~~~~~~evSak~~~gI~~lf~~L~~ 222 (373)
.... .-....+.. +. .....|++.+|+.++.|+++|...++.
T Consensus 262 k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 262 KKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 3211 001111111 11 112357888999999999998876654
No 475
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.37 E-value=5.5e-05 Score=65.63 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=42.7
Q ss_pred EEEEEccCccccceeeEEeeeC-------cccccccCCccccccccceeeeecceeee-----CCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRG-------QFHEYQESTIGGECQSSHSISFSMPTKNR-----LNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~-------~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-----~~~~~~l~iw~~~ 362 (373)
+++++|++++|||||+++|+.. .|...|.+|++.+-... +++..+.+.+ ++..+.++|||++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~~~~~~~~~l~Dt~ 75 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERG--ITIKAQTVRLNYKAKDGQEYLLNLIDTP 75 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCC--CeEecceEEEEEecCCCCcEEEEEEECC
Confidence 4789999999999999999863 35556666654221111 3444344333 7889999999986
No 476
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.36 E-value=6.2e-05 Score=63.85 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=39.4
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|.+++|||+|+++++.+.+ ..+.+|+| ... ..+.++ .+.+.|||+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~--------~~~--~~~~~~--~~~~~i~D~~ 51 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIG--------FNV--ETVEYK--NVSFTVWDVG 51 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcC--------cce--EEEEEC--CEEEEEEECC
Confidence 689999999999999999998874 56788998 332 223333 5789999975
No 477
>PRK04213 GTP-binding protein; Provisional
Probab=97.35 E-value=7.7e-05 Score=66.25 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=39.8
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
..++++++|.+++|||||++++.++.|...+.|++. +....+.++ .+.|||++-
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t----------~~~~~~~~~----~~~l~Dt~G 61 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT----------RKPNHYDWG----DFILTDLPG 61 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee----------eCceEEeec----ceEEEeCCc
Confidence 347899999999999999999998888766666443 222233333 589999874
No 478
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.35 E-value=5.8e-05 Score=64.61 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=38.2
Q ss_pred EEEEEccCccccceeeEEeeeC------cccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRG------QFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~------~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+++++|++++|||+|++++... .+...+.||++ .++. .+..+ ...+.|||++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~--------~~~~--~~~~~--~~~~~l~Dt~ 58 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVG--------LNIG--TIEVG--NARLKFWDLG 58 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccc--------cceE--EEEEC--CEEEEEEECC
Confidence 4789999999999999998653 23456789999 4442 23333 5788999976
No 479
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.35 E-value=3.6e-05 Score=64.21 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=28.2
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig 331 (373)
|++++|++++|||+|+++|.++.+ .|.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~ 32 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQA 32 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--cccccee
Confidence 789999999999999999998876 4778998
No 480
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.34 E-value=0.0011 Score=68.11 Aligned_cols=115 Identities=8% Similarity=0.072 Sum_probs=66.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeE-EEEEEEECCEEEEEEEEeCCCcccccc-------c---ch
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAF-ITQTVCLDDVTIRFEIWDTAGQERYHT-------L---AP 108 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~-~~~~i~~~~~~v~l~i~Dt~G~e~~~~-------l---~~ 108 (373)
..++++++|. ||||++|.+++...... ..+... ......+++ ..+.++||+|...... + ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 4477889986 99999999999764332 112111 111223444 4588999999754321 1 12
Q ss_pred hhcc--CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 109 MYYR--NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 109 ~~~~--~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
.+++ .+|++|+|..++......+-..+++.+....... --..+|||.|..|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~-------------------Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS-------------------IWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH-------------------hHcCEEEEEeCCccCC
Confidence 2333 5899999998864333212224455554421110 0124889999999864
No 481
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.30 E-value=0.00043 Score=58.08 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=37.6
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ 100 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~ 100 (373)
+++++|. |||||+|++.+.+.... +.|.+.....+.+++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 6778886 99999999998877544 555555566666665 4789999995
No 482
>KOG2484|consensus
Probab=97.29 E-value=0.00023 Score=68.34 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=39.4
Q ss_pred ccccccchhhccCCcEEEEEEECCCHhhH--HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160 101 ERYHTLAPMYYRNAQAAIIVYDITNQDTF--GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178 (373)
Q Consensus 101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf--~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D 178 (373)
..|.......+..+|+||-|.|+.||.+- .++++|+.. ...+...|+|.||.|
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~-------------------------~~gnKkLILVLNK~D 188 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ-------------------------AHGNKKLILVLNKID 188 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh-------------------------ccCCceEEEEeehhc
Confidence 34444555567789999999999998753 344554322 124578999999999
Q ss_pred CCC
Q psy18160 179 LPT 181 (373)
Q Consensus 179 l~~ 181 (373)
|..
T Consensus 189 LVP 191 (435)
T KOG2484|consen 189 LVP 191 (435)
T ss_pred cCC
Confidence 954
No 483
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.27 E-value=0.0001 Score=64.34 Aligned_cols=58 Identities=22% Similarity=0.135 Sum_probs=41.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
....+++++|.+++|||||+++++...|...+.++.|.++. .++ +.+++ .+.|||+.-
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~----~~~----~~~~~---~~~liDtpG 73 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQL----INF----FEVND---GFRLVDLPG 73 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceE----EEE----EEeCC---cEEEEeCCC
Confidence 34578999999999999999999988777777777773222 121 22233 588898864
No 484
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.25 E-value=0.00011 Score=64.80 Aligned_cols=57 Identities=25% Similarity=0.190 Sum_probs=42.7
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
...+++++|.+++|||||+++++.+.|...+.++.|.+.. +.+. .+ ...+.|||+.-
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~----~~~~----~~---~~~l~l~DtpG 79 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL----INFF----EV---NDKLRLVDLPG 79 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE----EEEE----ec---CCeEEEeCCCC
Confidence 3478999999999999999999988888888888883322 2221 11 36788999864
No 485
>KOG1547|consensus
Probab=97.24 E-value=0.003 Score=56.90 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=40.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc------------ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY------------LFSAAFITQTVCLDDVTIRFEIWDTAGQ 100 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~ 100 (373)
+.|+|+|+ |||||+|.+........ |+........++-++...++.+.||+|-
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 57888887 99999999986654332 5555555666666888889999999994
No 486
>KOG0073|consensus
Probab=97.23 E-value=0.00016 Score=61.05 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=44.0
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV 361 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~ 361 (373)
+...+++.++|..|+|||+++.+|.+.. .+.-.||.| |..+++..++ .+|+|||+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g----------f~Iktl~~~~--~~L~iwDv 67 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG----------FQIKTLEYKG--YTLNIWDV 67 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc----------eeeEEEEecc--eEEEEEEc
Confidence 4457999999999999999999998665 666789999 5556666554 57888987
No 487
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.22 E-value=0.00015 Score=62.52 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=41.0
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++|+|||+|++++....+. .+.||.| .++ ..+..++ ..+.+||++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g--------~~~--~~i~~~~--~~~~~~D~~ 66 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQG--------FNI--KTVQSDG--FKLNVWDIG 66 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCC--------cce--EEEEECC--EEEEEEECC
Confidence 3589999999999999999999987664 4788998 333 2344454 567889865
No 488
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.20 E-value=0.00011 Score=62.38 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=36.7
Q ss_pred EEEEEccCccccceeeEEeee---CcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR---GQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~---~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
-++++|++++|||+|++++.. +.|...+.+++. ++.....+..++ ...++|||++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t--------~~~~~~~~~~~~-~~~~~~~Dtp 59 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGIT--------IDLGFAYLDLPS-GKRLGFIDVP 59 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCce--------EEeeeEEEEecC-CcEEEEEECC
Confidence 368999999999999999985 455555544443 222223344442 3578999987
No 489
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.14 E-value=0.0023 Score=54.42 Aligned_cols=51 Identities=10% Similarity=-0.143 Sum_probs=35.4
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ 100 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~ 100 (373)
..+++++|. |||||+|++.+...... +.|.+...+.+..++ .+.+|||||.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 356788886 99999999997664443 666554433333433 5889999983
No 490
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.13 E-value=0.00012 Score=63.74 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=41.9
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|..++|||++++++..+.+.. +.||+| .+. ..+..++ +.+.|||+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--------~~~--~~i~~~~--~~~~~~d~g 66 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--------FNI--EEIKYKG--YSLTIWDLG 66 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--------EEE--EEEEETT--EEEEEEEES
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--------ccc--ceeeeCc--EEEEEEecc
Confidence 356899999999999999999998776654 889999 333 3444444 567889874
No 491
>KOG2423|consensus
Probab=97.11 E-value=0.0016 Score=62.50 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=54.9
Q ss_pred ccCCcEEEEEEECCCHhh--HHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 111 YRNAQAAIIVYDITNQDT--FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~~S--f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
+..+|++|-|.|+.|+.. -..+++++. ...+...+|+|.||+||... .++.
T Consensus 211 iDSSDVvvqVlDARDPmGTrc~~ve~ylk-------------------------ke~phKHli~vLNKvDLVPt--wvt~ 263 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRCKHVEEYLK-------------------------KEKPHKHLIYVLNKVDLVPT--WVTA 263 (572)
T ss_pred hcccceeEEeeeccCCcccccHHHHHHHh-------------------------hcCCcceeEEEeeccccccH--HHHH
Confidence 457899999999998752 344554443 24567889999999999652 2333
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.=...+.+++..--|..|-.+..|=-.+++ |++++
T Consensus 264 ~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~-llRQf 298 (572)
T KOG2423|consen 264 KWVRHLSKEYPTIAFHASINNSFGKGALIQ-LLRQF 298 (572)
T ss_pred HHHHHHhhhCcceeeehhhcCccchhHHHH-HHHHH
Confidence 333445555555566777666666544443 33333
No 492
>KOG0070|consensus
Probab=97.11 E-value=0.00057 Score=59.02 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=41.5
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV 361 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~ 361 (373)
.+++++++|--++|||+++.++..+++... .||||.+....++- ++++++||+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk------------n~~f~vWDv 68 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK------------NISFTVWDV 68 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc------------ceEEEEEec
Confidence 357899999999999999999999999888 89999444433333 566666665
No 493
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.07 E-value=0.0025 Score=62.81 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=62.0
Q ss_pred HHhhhCcCcCc----------ceeeeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---
Q psy18160 62 QIVINVVFYPY----------LFSAAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD--- 127 (373)
Q Consensus 62 ~rl~~~~~~~~----------Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~--- 127 (373)
.|++...|.+. |.|+. ...+.+ ++ ..+.++|++||..-+.-|..++.+++++|||+|+++-.
T Consensus 201 ~RI~~~~Y~PT~~DIl~~r~~T~Gi~--e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~ 276 (389)
T PF00503_consen 201 DRIAQPDYIPTDEDILRCRVKTTGIT--EIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTL 276 (389)
T ss_dssp HHHHSTTB---HHHHHHS----SSEE--EEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBE
T ss_pred hhhcCCCccCCCCCeeeecCCCCCee--EEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhh
Confidence 35555666654 66654 344555 44 56889999999888888999999999999999986421
Q ss_pred -------hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 128 -------TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 128 -------Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
.+.+....++.+... ..-.+.|++|+.||.|+
T Consensus 277 ~ed~~~nrl~esl~lF~~i~~~--------------------~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 277 YEDPNTNRLHESLNLFESICNN--------------------PWFKNTPIILFLNKIDL 315 (389)
T ss_dssp SSSTTSBHHHHHHHHHHHHHTS--------------------GGGTTSEEEEEEE-HHH
T ss_pred cccchHHHHHHHHHHHHHHHhC--------------------cccccCceEEeeecHHH
Confidence 233334444554441 22258899999999997
No 494
>KOG0469|consensus
Probab=97.07 E-value=0.0028 Score=62.61 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=80.4
Q ss_pred CCCCCCcEEEEEEcC-ChhHHHHHhhhC------------cCcCc-----ceeeeEEEEEEEE----------------C
Q psy18160 41 GKRQSDCMAQIWLKD-RVDCMTQIVINV------------VFYPY-----LFSAAFITQTVCL----------------D 86 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~-GKTsLl~rl~~~------------~~~~~-----Tig~~~~~~~i~~----------------~ 86 (373)
...+-..+-++.-.+ |||||...+... +|... ..|.+.....+.+ +
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 334444566777777 999999988743 23322 2222222222221 3
Q ss_pred CEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCC
Q psy18160 87 DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP 166 (373)
Q Consensus 87 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (373)
+..+.++++|.+|+-.|.+.....++-.|+++.|+|.-+.--.+ .+..+.+... +
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~------------------------E 149 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA------------------------E 149 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHH------------------------h
Confidence 56788999999999999999999999999999999987642111 1112222222 3
Q ss_pred CCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 167 NIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 167 ~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
.+..+++.||.|..--+-+.+.++..+
T Consensus 150 RIkPvlv~NK~DRAlLELq~~~EeLyq 176 (842)
T KOG0469|consen 150 RIKPVLVMNKMDRALLELQLSQEELYQ 176 (842)
T ss_pred hccceEEeehhhHHHHhhcCCHHHHHH
Confidence 566688999999643223455565433
No 495
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.99 E-value=0.0007 Score=62.12 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=56.4
Q ss_pred EEEEEeCCCcccccccchhhc--------cCCcEEEEEEECC---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHh
Q psy18160 91 RFEIWDTAGQERYHTLAPMYY--------RNAQAAIIVYDIT---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKE 159 (373)
Q Consensus 91 ~l~i~Dt~G~e~~~~l~~~~~--------~~ad~iilv~D~~---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~ 159 (373)
.+.|+|||||.++...+...- ...-++++++|.. ++..|-.. ++..+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~------------------ 151 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSI------------------ 151 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHH------------------
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHH------------------
Confidence 578999999987765554433 4566889999975 33344322 2221111
Q ss_pred hhhcCCCCCeEEEEEeCCCCCCCCcc------cCHH------------HHHHHHHH---cC-C-eEEEEcCCCCCCHHHH
Q psy18160 160 LQRMAPPNIVIALAGNKADLPTSRRC------VEYS------------EGEAYAEE---NG-L-LFMETSAKTAMNVNEI 216 (373)
Q Consensus 160 ~~~~~~~~~piilVgnK~Dl~~~~~~------v~~~------------e~~~~~~~---~~-~-~~~evSak~~~gI~~l 216 (373)
...-+.|.+.|.||+|+.+.... .+.+ -..++++- .+ . +++.+|++++++++++
T Consensus 152 ---~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 152 ---MLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp ---HHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHH
T ss_pred ---HhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHH
Confidence 01137899999999999762100 0000 00111211 12 3 6999999999999999
Q ss_pred HHHHHHH
Q psy18160 217 FVEIAKK 223 (373)
Q Consensus 217 f~~L~~~ 223 (373)
+..+-+.
T Consensus 229 ~~~id~a 235 (238)
T PF03029_consen 229 LAAIDKA 235 (238)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887554
No 496
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.90 E-value=0.0019 Score=55.95 Aligned_cols=51 Identities=8% Similarity=-0.092 Sum_probs=37.3
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQ 100 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~ 100 (373)
.++++++|. |||||+|++.+..+... ..+.++....+.++ ..+.+|||||.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 367888887 99999999999877443 45555555555554 34789999994
No 497
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.87 E-value=0.00049 Score=68.89 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=43.2
Q ss_pred ceEEEEEccCccccceeeEEeeeCc--ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQ--FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~--f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.+|++++|++|+|||||+++++... +...+..| . .|+....+.++|.+ +.|||++-
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt-T--------rd~~~~~i~~~g~~--v~l~DTaG 260 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT-T--------RDVVEGDFELNGIL--IKLLDTAG 260 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-E--------EEEEEEEEEECCEE--EEEeeCCC
Confidence 3799999999999999999999764 45666544 3 46656777788765 47999874
No 498
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.85 E-value=0.00043 Score=59.22 Aligned_cols=53 Identities=23% Similarity=0.113 Sum_probs=35.8
Q ss_pred EEEEEccCccccceeeEEeeeCccccc-c-cCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEY-Q-ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~-~-~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+++++|.+++|||+|++++..+.+... + .+|.+ .... .+ +...+.+.|||++-
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--------~~~~--~~--~~~~~~~~i~Dt~G 56 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS--------LFVG--HF--DYKYLRWQVIDTPG 56 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc--------eeEE--EE--ccCceEEEEEECCC
Confidence 679999999999999999998877432 2 12333 2211 11 22357899999874
No 499
>KOG0448|consensus
Probab=96.83 E-value=0.014 Score=59.86 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=44.6
Q ss_pred EEEEeCCCcc---cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 92 FEIWDTAGQE---RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 92 l~i~Dt~G~e---~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
+.+.|.||.+ +..+....+..++|++|||....+..+..+- .++....+ ..+
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~------------------------~Kp 262 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE------------------------EKP 262 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc------------------------cCC
Confidence 4567777753 4555677788899999999998776554332 34444333 245
Q ss_pred eEEEEEeCCCCCCC
Q psy18160 169 VIALAGNKADLPTS 182 (373)
Q Consensus 169 piilVgnK~Dl~~~ 182 (373)
-|+|+-||.|....
T Consensus 263 niFIlnnkwDasas 276 (749)
T KOG0448|consen 263 NIFILNNKWDASAS 276 (749)
T ss_pred cEEEEechhhhhcc
Confidence 68899999998543
No 500
>KOG4273|consensus
Probab=96.81 E-value=0.015 Score=52.64 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=84.3
Q ss_pred ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEE----EEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh
Q psy18160 56 RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTI----RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT 128 (373)
Q Consensus 56 GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v----~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S 128 (373)
||-+|++|+....|... .-...|+-. .++.+.+ .+.|.-. .+++.-..........+++.|||++....
T Consensus 18 g~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishi--cde~~lpn~~~a~pl~a~vmvfdlse~s~ 93 (418)
T KOG4273|consen 18 GDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHI--CDEKFLPNAEIAEPLQAFVMVFDLSEKSG 93 (418)
T ss_pred chHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecc--cchhccCCcccccceeeEEEEEeccchhh
Confidence 99999999999888766 112223222 2233322 1222111 12222122223445689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------------c-------
Q psy18160 129 FGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------------R------- 184 (373)
Q Consensus 129 f~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------------~------- 184 (373)
+..+..|+....- ++ -+ ..+-+|||.|..... |
T Consensus 94 l~alqdwl~htdi------ns----------------fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~ 150 (418)
T KOG4273|consen 94 LDALQDWLPHTDI------NS----------------FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDIC 150 (418)
T ss_pred hHHHHhhcccccc------cc----------------ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhh
Confidence 9999988753211 00 01 245578888853210 0
Q ss_pred -------------------ccCHHHHHHHHHHcCCeEEEEcCCC------------CCCHHHHHHHHHHHc
Q psy18160 185 -------------------CVEYSEGEAYAEENGLLFMETSAKT------------AMNVNEIFVEIAKKL 224 (373)
Q Consensus 185 -------------------~v~~~e~~~~~~~~~~~~~evSak~------------~~gI~~lf~~L~~~i 224 (373)
......+.+|+.++|+.|+|.+|.+ .+||+.+|..|-..+
T Consensus 151 dfgisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 151 DFGISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred hccccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 0112235678889999999999843 248999998886554
Done!