Query psy18160
Match_columns 373
No_of_seqs 404 out of 3442
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 00:07:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7.9E-37 2.7E-41 275.4 18.2 163 45-229 11-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 3.7E-29 1.3E-33 222.3 22.3 161 45-227 6-172 (206)
3 2fu5_C RAS-related protein RAB 100.0 9E-29 3.1E-33 215.2 18.9 162 46-229 7-174 (183)
4 2efe_B Small GTP-binding prote 100.0 3.2E-28 1.1E-32 211.0 22.2 163 43-227 8-176 (181)
5 2ew1_A RAS-related protein RAB 100.0 1.4E-28 4.7E-33 218.9 19.7 164 43-228 22-191 (201)
6 2hup_A RAS-related protein RAB 100.0 1.1E-28 3.9E-33 218.9 19.1 163 44-228 26-195 (201)
7 2a5j_A RAS-related protein RAB 100.0 5E-28 1.7E-32 212.6 21.8 164 44-229 18-187 (191)
8 3cpj_B GTP-binding protein YPT 100.0 2.5E-28 8.6E-33 220.1 19.8 162 45-228 11-178 (223)
9 1z0f_A RAB14, member RAS oncog 100.0 4.1E-28 1.4E-32 209.5 20.3 162 43-226 11-178 (179)
10 2bov_A RAla, RAS-related prote 100.0 3.7E-28 1.3E-32 215.1 20.4 165 42-228 9-179 (206)
11 3t5g_A GTP-binding protein RHE 100.0 4.8E-28 1.7E-32 210.2 20.6 164 44-229 3-172 (181)
12 3cbq_A GTP-binding protein REM 100.0 3.1E-28 1E-32 215.4 18.9 167 40-227 16-189 (195)
13 3tkl_A RAS-related protein RAB 100.0 1.1E-27 3.7E-32 210.4 22.3 163 45-229 14-182 (196)
14 2gf9_A RAS-related protein RAB 100.0 1.2E-27 4E-32 209.7 22.0 161 45-227 20-186 (189)
15 1r2q_A RAS-related protein RAB 100.0 7E-28 2.4E-32 206.0 19.9 158 46-225 5-168 (170)
16 2nzj_A GTP-binding protein REM 100.0 8E-28 2.7E-32 207.1 19.9 162 46-228 3-171 (175)
17 2bme_A RAB4A, RAS-related prot 100.0 1E-27 3.5E-32 208.9 20.4 163 45-229 8-176 (186)
18 2oil_A CATX-8, RAS-related pro 100.0 1.5E-27 5E-32 209.6 20.9 165 42-228 20-190 (193)
19 3tw8_B RAS-related protein RAB 100.0 1.2E-27 4.2E-32 206.8 20.1 163 44-229 6-174 (181)
20 2g6b_A RAS-related protein RAB 100.0 2E-27 7E-32 205.7 21.4 160 45-226 8-174 (180)
21 1z08_A RAS-related protein RAB 100.0 5.8E-28 2E-32 207.0 17.6 158 46-225 5-168 (170)
22 2g3y_A GTP-binding protein GEM 100.0 6.6E-28 2.3E-32 216.3 18.3 164 43-227 33-204 (211)
23 1ek0_A Protein (GTP-binding pr 100.0 1.8E-27 6.2E-32 203.4 20.2 158 47-225 3-168 (170)
24 1z0j_A RAB-22, RAS-related pro 100.0 2.8E-27 9.6E-32 202.5 21.3 158 46-225 5-168 (170)
25 3q3j_B RHO-related GTP-binding 100.0 6.2E-28 2.1E-32 216.5 17.8 164 43-229 23-206 (214)
26 3kkq_A RAS-related protein M-R 100.0 2.5E-27 8.6E-32 206.0 21.1 161 44-226 15-182 (183)
27 2iwr_A Centaurin gamma 1; ANK 100.0 2.8E-27 9.7E-32 204.8 21.2 160 45-228 5-171 (178)
28 1g16_A RAS-related protein SEC 100.0 1.6E-27 5.4E-32 204.0 19.3 158 47-227 3-166 (170)
29 2o52_A RAS-related protein RAB 100.0 1.3E-27 4.5E-32 211.8 19.1 163 45-229 23-191 (200)
30 2hxs_A RAB-26, RAS-related pro 100.0 1.2E-27 4E-32 206.8 18.3 163 46-227 5-174 (178)
31 1zbd_A Rabphilin-3A; G protein 100.0 2.9E-27 9.8E-32 209.4 21.1 161 46-228 7-173 (203)
32 3dz8_A RAS-related protein RAB 100.0 1.8E-28 6.3E-33 215.4 13.0 163 44-228 20-188 (191)
33 3q85_A GTP-binding protein REM 100.0 1.6E-27 5.4E-32 204.3 18.5 159 47-226 2-167 (169)
34 3q72_A GTP-binding protein RAD 100.0 1.7E-27 5.9E-32 203.4 18.7 158 47-226 2-164 (166)
35 2fn4_A P23, RAS-related protei 100.0 3E-27 1E-31 204.4 20.2 164 43-228 5-174 (181)
36 3oes_A GTPase rhebl1; small GT 100.0 8.2E-28 2.8E-32 213.1 16.8 167 41-229 18-190 (201)
37 2fg5_A RAB-22B, RAS-related pr 100.0 1.6E-27 5.6E-32 209.6 18.6 160 45-226 21-186 (192)
38 2y8e_A RAB-protein 6, GH09086P 100.0 2.2E-27 7.4E-32 204.9 19.0 159 46-226 13-177 (179)
39 2il1_A RAB12; G-protein, GDP, 100.0 8.7E-28 3E-32 211.5 16.8 162 43-226 22-190 (192)
40 3bc1_A RAS-related protein RAB 100.0 2E-27 6.8E-32 207.8 18.9 168 41-229 5-188 (195)
41 3c5c_A RAS-like protein 12; GD 100.0 1.3E-27 4.3E-32 209.7 17.4 162 43-225 17-185 (187)
42 2p5s_A RAS and EF-hand domain 100.0 1.1E-27 3.8E-32 211.9 17.0 163 43-226 24-197 (199)
43 1vg8_A RAS-related protein RAB 100.0 1.9E-27 6.7E-32 210.8 18.6 166 44-228 5-177 (207)
44 2atx_A Small GTP binding prote 100.0 2.8E-27 9.4E-32 208.0 19.2 165 38-225 9-192 (194)
45 3ihw_A Centg3; RAS, centaurin, 100.0 4.3E-27 1.5E-31 206.0 20.1 161 42-228 15-182 (184)
46 3reg_A RHO-like small GTPase; 100.0 5.1E-27 1.7E-31 206.5 20.5 161 44-227 20-189 (194)
47 2gf0_A GTP-binding protein DI- 100.0 2.4E-27 8E-32 208.8 18.3 164 44-229 5-174 (199)
48 1z2a_A RAS-related protein RAB 100.0 2.4E-27 8.3E-32 202.5 17.8 158 46-226 4-167 (168)
49 2j0v_A RAC-like GTP-binding pr 100.0 1.5E-27 5.2E-32 212.8 17.0 161 45-228 7-182 (212)
50 1z06_A RAS-related protein RAB 100.0 3.3E-27 1.1E-31 206.8 18.6 161 44-225 17-187 (189)
51 1x3s_A RAS-related protein RAB 100.0 1.2E-26 4.2E-31 203.3 21.7 161 45-227 13-179 (195)
52 1wms_A RAB-9, RAB9, RAS-relate 100.0 7.5E-27 2.6E-31 201.5 19.9 164 44-226 4-174 (177)
53 4dsu_A GTPase KRAS, isoform 2B 100.0 7.2E-27 2.5E-31 203.6 19.9 161 46-229 3-169 (189)
54 1m7b_A RND3/RHOE small GTP-bin 99.9 5.5E-27 1.9E-31 204.7 17.5 160 44-226 4-183 (184)
55 1ky3_A GTP-binding protein YPT 99.9 3.7E-27 1.3E-31 204.0 16.1 167 44-227 5-179 (182)
56 1c1y_A RAS-related protein RAP 99.9 9.3E-27 3.2E-31 198.6 18.3 157 47-225 3-166 (167)
57 3clv_A RAB5 protein, putative; 99.9 2.9E-26 9.8E-31 201.7 22.0 159 44-227 4-205 (208)
58 3cph_A RAS-related protein SEC 99.9 1.7E-26 5.8E-31 205.7 20.6 164 43-229 16-185 (213)
59 2atv_A RERG, RAS-like estrogen 99.9 1E-26 3.5E-31 205.0 18.7 164 41-227 22-192 (196)
60 2q3h_A RAS homolog gene family 99.9 1.5E-26 5.1E-31 204.5 19.6 163 42-227 15-196 (201)
61 2cjw_A GTP-binding protein GEM 99.9 1.6E-26 5.6E-31 203.7 19.5 160 47-227 6-173 (192)
62 1u8z_A RAS-related protein RAL 99.9 1.6E-26 5.4E-31 197.0 18.7 157 47-225 4-166 (168)
63 2f7s_A C25KG, RAS-related prot 99.9 5.2E-27 1.8E-31 210.1 16.4 164 45-229 23-202 (217)
64 1gwn_A RHO-related GTP-binding 99.9 1.2E-26 4E-31 206.9 17.3 160 44-226 25-204 (205)
65 2a9k_A RAS-related protein RAL 99.9 2.9E-26 9.8E-31 199.2 19.0 162 45-228 16-183 (187)
66 1kao_A RAP2A; GTP-binding prot 99.9 2.2E-26 7.5E-31 195.9 17.1 157 47-225 3-165 (167)
67 3t1o_A Gliding protein MGLA; G 99.9 3.7E-27 1.3E-31 206.7 12.2 163 41-229 8-195 (198)
68 2yc2_C IFT27, small RAB-relate 99.9 5.5E-27 1.9E-31 207.7 13.3 161 45-227 18-193 (208)
69 3l0i_B RAS-related protein RAB 99.9 8.1E-28 2.8E-32 212.8 7.7 160 45-226 31-196 (199)
70 1mh1_A RAC1; GTP-binding, GTPa 99.9 4.9E-26 1.7E-30 197.8 18.2 158 46-226 4-180 (186)
71 2j1l_A RHO-related GTP-binding 99.9 3.4E-26 1.2E-30 204.9 17.6 161 44-227 31-210 (214)
72 3con_A GTPase NRAS; structural 99.9 2.9E-25 1E-29 194.2 21.2 160 45-227 19-184 (190)
73 2erx_A GTP-binding protein DI- 99.9 6.9E-26 2.3E-30 194.0 16.5 160 46-226 2-167 (172)
74 2gco_A H9, RHO-related GTP-bin 99.9 1.8E-25 6.2E-30 198.0 19.5 157 46-225 24-199 (201)
75 3bwd_D RAC-like GTP-binding pr 99.9 1.4E-26 4.8E-31 200.7 11.5 157 46-225 7-180 (182)
76 2ce2_X GTPase HRAS; signaling 99.9 5E-25 1.7E-29 187.0 20.9 156 47-225 3-164 (166)
77 3gj0_A GTP-binding nuclear pro 99.9 2.7E-26 9.3E-31 206.3 13.7 164 39-227 7-176 (221)
78 4djt_A GTP-binding nuclear pro 99.9 7.2E-26 2.5E-30 202.8 16.3 164 44-229 8-178 (218)
79 2fv8_A H6, RHO-related GTP-bin 99.9 3E-25 1E-29 197.5 19.5 157 47-226 25-200 (207)
80 4gzl_A RAS-related C3 botulinu 99.9 1.9E-25 6.4E-30 198.6 17.6 158 44-224 27-203 (204)
81 2hjg_A GTP-binding protein ENG 99.9 1.2E-26 4E-31 230.1 6.6 214 48-364 4-233 (436)
82 1f6b_A SAR1; gtpases, N-termin 99.9 4.7E-25 1.6E-29 195.2 16.0 151 47-224 25-197 (198)
83 4bas_A ADP-ribosylation factor 99.9 1.3E-24 4.5E-29 191.2 18.5 167 41-229 11-192 (199)
84 1m2o_B GTP-binding protein SAR 99.9 1.1E-24 3.8E-29 191.4 17.0 150 47-223 23-189 (190)
85 1upt_A ARL1, ADP-ribosylation 99.9 5.9E-25 2E-29 188.3 14.7 154 46-226 6-169 (171)
86 1fzq_A ADP-ribosylation factor 99.9 7.5E-25 2.6E-29 190.9 14.8 155 45-226 14-178 (181)
87 1r8s_A ADP-ribosylation factor 99.9 2.3E-25 8E-30 189.7 10.6 152 48-226 1-162 (164)
88 2h57_A ADP-ribosylation factor 99.9 3.4E-24 1.2E-28 187.7 18.2 155 45-226 19-187 (190)
89 3llu_A RAS-related GTP-binding 99.9 1.9E-25 6.6E-30 197.1 10.0 160 41-224 14-195 (196)
90 2f9l_A RAB11B, member RAS onco 99.9 1.2E-23 4E-28 186.0 21.5 160 47-228 5-170 (199)
91 2b6h_A ADP-ribosylation factor 99.9 8.2E-25 2.8E-29 192.6 13.4 155 44-225 26-190 (192)
92 1zj6_A ADP-ribosylation factor 99.9 2.1E-24 7.2E-29 188.6 15.8 154 46-226 15-178 (187)
93 1mky_A Probable GTP-binding pr 99.9 8.1E-25 2.8E-29 217.1 13.7 213 49-363 3-237 (439)
94 2h17_A ADP-ribosylation factor 99.9 2.4E-24 8.1E-29 187.4 14.9 155 42-223 16-180 (181)
95 1oix_A RAS-related protein RAB 99.9 2.5E-23 8.6E-28 183.0 20.5 158 45-224 27-190 (191)
96 1zd9_A ADP-ribosylation factor 99.9 2.9E-24 1E-28 188.1 14.3 155 45-226 20-185 (188)
97 1ksh_A ARF-like protein 2; sma 99.9 1.1E-23 3.8E-28 183.5 17.9 155 45-226 16-180 (186)
98 2zej_A Dardarin, leucine-rich 99.9 3.7E-25 1.2E-29 193.3 8.1 157 47-226 2-178 (184)
99 2wkq_A NPH1-1, RAS-related C3 99.9 2.4E-23 8.3E-28 197.8 19.2 157 46-225 154-329 (332)
100 1moz_A ARL1, ADP-ribosylation 99.9 7.4E-24 2.5E-28 183.8 14.1 156 45-227 16-181 (183)
101 2x77_A ADP-ribosylation factor 99.9 2.7E-24 9.3E-29 188.0 10.9 154 46-226 21-184 (189)
102 3th5_A RAS-related C3 botulinu 99.8 5.7E-26 1.9E-30 201.5 0.0 160 42-224 25-203 (204)
103 4dcu_A GTP-binding protein ENG 99.9 8.5E-25 2.9E-29 217.9 6.8 215 47-363 23-252 (456)
104 3r7w_B Gtpase2, GTP-binding pr 99.9 3E-24 1E-28 202.8 6.7 151 49-227 1-175 (331)
105 2fh5_B SR-beta, signal recogni 99.9 2E-23 6.7E-28 186.3 10.2 160 45-224 5-214 (214)
106 3c5h_A Glucocorticoid receptor 99.9 3.7E-24 1.3E-28 197.3 5.6 159 44-225 16-254 (255)
107 2wji_A Ferrous iron transport 99.9 1.1E-22 3.7E-27 174.4 12.6 147 47-224 3-163 (165)
108 3o47_A ADP-ribosylation factor 99.9 4.5E-22 1.5E-26 190.1 14.7 155 45-226 163-327 (329)
109 3r7w_A Gtpase1, GTP-binding pr 99.9 1E-21 3.5E-26 185.8 14.0 157 47-226 3-181 (307)
110 3lvq_E ARF-GAP with SH3 domain 99.9 2.2E-21 7.6E-26 195.2 16.8 159 45-230 320-488 (497)
111 2qu8_A Putative nucleolar GTP- 99.9 4.9E-21 1.7E-25 173.0 17.0 158 45-228 27-207 (228)
112 1u0l_A Probable GTPase ENGC; p 99.9 5.8E-23 2E-27 193.8 4.2 131 58-221 31-168 (301)
113 2lkc_A Translation initiation 99.9 2.6E-21 8.9E-26 166.7 13.8 149 45-227 6-172 (178)
114 2wjg_A FEOB, ferrous iron tran 99.9 1.8E-21 6.3E-26 169.5 11.8 152 46-228 6-171 (188)
115 1svi_A GTP-binding protein YSX 99.9 1.6E-21 5.4E-26 170.9 10.7 157 40-225 16-194 (195)
116 2cxx_A Probable GTP-binding pr 99.8 9.1E-22 3.1E-26 171.5 7.2 160 48-227 2-185 (190)
117 2dyk_A GTP-binding protein; GT 99.8 3.9E-21 1.3E-25 162.7 10.6 144 48-224 2-160 (161)
118 2gj8_A MNME, tRNA modification 99.8 4.3E-21 1.5E-25 165.8 10.7 148 47-226 4-166 (172)
119 3pqc_A Probable GTP-binding pr 99.8 2.7E-20 9.4E-25 162.5 12.7 156 40-225 16-193 (195)
120 3dpu_A RAB family protein; roc 99.8 1.1E-20 3.8E-25 191.8 9.4 158 44-227 38-209 (535)
121 3a1s_A Iron(II) transport prot 99.8 3.1E-20 1.1E-24 171.3 10.6 149 46-225 4-166 (258)
122 3b1v_A Ferrous iron uptake tra 99.8 2.1E-20 7.2E-25 173.7 8.2 149 47-225 3-163 (272)
123 3iev_A GTP-binding protein ERA 99.8 1.1E-19 3.7E-24 172.0 13.0 159 42-226 5-182 (308)
124 4dhe_A Probable GTP-binding pr 99.8 1E-19 3.6E-24 162.9 9.5 162 40-227 22-212 (223)
125 1nrj_B SR-beta, signal recogni 99.8 3E-20 1E-24 166.0 4.3 147 39-212 4-170 (218)
126 3iby_A Ferrous iron transport 99.8 2.3E-19 8E-24 165.3 8.4 144 49-223 3-164 (256)
127 2hjg_A GTP-binding protein ENG 99.8 7.9E-19 2.7E-23 173.8 10.8 155 45-227 173-350 (436)
128 4dcu_A GTP-binding protein ENG 99.8 1.3E-18 4.6E-23 173.2 11.5 157 44-228 192-371 (456)
129 3qq5_A Small GTP-binding prote 99.8 3.3E-19 1.1E-23 175.1 6.7 156 41-227 28-197 (423)
130 3i8s_A Ferrous iron transport 99.8 5.4E-19 1.8E-23 164.4 7.6 149 47-226 3-169 (274)
131 3k53_A Ferrous iron transport 99.8 2.4E-18 8.3E-23 159.6 12.0 150 47-226 3-166 (271)
132 3gee_A MNME, tRNA modification 99.7 1.1E-17 3.7E-22 166.9 14.7 150 47-225 233-397 (476)
133 1wf3_A GTP-binding protein; GT 99.7 6.4E-18 2.2E-22 159.2 11.2 150 45-225 5-172 (301)
134 1cip_A Protein (guanine nucleo 99.7 6.2E-18 2.1E-22 162.4 8.3 142 62-227 159-345 (353)
135 1azs_C GS-alpha; complex (lyas 99.7 1.5E-17 5.3E-22 161.6 10.7 142 62-228 183-387 (402)
136 2yv5_A YJEQ protein; hydrolase 99.7 8.9E-18 3.1E-22 158.3 8.5 96 100-220 66-163 (302)
137 2xtz_A Guanine nucleotide-bind 99.7 1.1E-17 3.8E-22 160.7 9.0 145 61-228 142-347 (354)
138 3cb4_D GTP-binding protein LEP 99.7 6.4E-17 2.2E-21 165.2 15.1 153 46-226 3-182 (599)
139 1xzp_A Probable tRNA modificat 99.7 4.6E-17 1.6E-21 162.5 13.1 146 48-226 244-405 (482)
140 2e87_A Hypothetical protein PH 99.7 5.1E-17 1.8E-21 156.7 12.3 153 46-227 166-337 (357)
141 3sjy_A Translation initiation 99.7 3.5E-16 1.2E-20 153.2 17.2 160 44-226 5-192 (403)
142 3ohm_A Guanine nucleotide-bind 99.7 2.9E-17 9.8E-22 155.7 8.8 142 62-227 133-319 (327)
143 1zcb_A G alpha I/13; GTP-bindi 99.7 4.7E-17 1.6E-21 156.8 9.8 144 61-228 166-355 (362)
144 1lnz_A SPO0B-associated GTP-bi 99.7 3.1E-17 1E-21 157.0 8.3 151 49-226 160-330 (342)
145 2ywe_A GTP-binding protein LEP 99.7 1.5E-16 5E-21 162.3 13.6 154 45-226 4-184 (600)
146 1s0u_A EIF-2-gamma, translatio 99.7 5.7E-16 1.9E-20 152.0 17.2 155 45-226 6-198 (408)
147 2qtf_A Protein HFLX, GTP-bindi 99.7 1.4E-16 4.9E-21 153.7 11.9 154 49-226 181-354 (364)
148 1mky_A Probable GTP-binding pr 99.7 1E-15 3.5E-20 151.6 15.4 155 45-227 178-356 (439)
149 3j2k_7 ERF3, eukaryotic polype 99.6 7.7E-16 2.6E-20 152.4 13.5 151 42-218 12-217 (439)
150 3geh_A MNME, tRNA modification 99.6 1.3E-16 4.4E-21 158.5 7.4 147 47-227 224-385 (462)
151 1wb1_A Translation elongation 99.6 6.1E-16 2.1E-20 154.8 12.4 148 46-225 18-188 (482)
152 1ega_A Protein (GTP-binding pr 99.6 4.1E-16 1.4E-20 146.8 10.4 152 46-226 7-175 (301)
153 1kk1_A EIF2gamma; initiation o 99.6 2.2E-15 7.4E-20 148.0 15.8 155 45-226 8-200 (410)
154 3p26_A Elongation factor 1 alp 99.6 2.8E-16 9.7E-21 157.4 9.6 147 45-215 31-227 (483)
155 2xtp_A GTPase IMAP family memb 99.6 1.1E-15 3.8E-20 140.5 11.7 159 44-227 19-209 (260)
156 2c78_A Elongation factor TU-A; 99.6 2.5E-16 8.7E-21 154.3 7.8 156 45-225 9-211 (405)
157 4fid_A G protein alpha subunit 99.6 1.6E-16 5.6E-21 151.1 5.8 141 62-226 127-328 (340)
158 2ged_A SR-beta, signal recogni 99.6 8.3E-16 2.8E-20 134.2 9.5 116 45-182 46-171 (193)
159 3izy_P Translation initiation 99.6 1.9E-17 6.4E-22 166.8 -1.3 152 48-225 5-167 (537)
160 3tr5_A RF-3, peptide chain rel 99.6 9.2E-16 3.2E-20 154.8 10.4 110 46-182 12-149 (528)
161 1d2e_A Elongation factor TU (E 99.6 9.1E-16 3.1E-20 150.0 9.8 154 47-225 3-194 (397)
162 3lxx_A GTPase IMAP family memb 99.6 4.6E-15 1.6E-19 134.7 13.6 162 41-226 23-214 (239)
163 2qag_A Septin-2, protein NEDD5 99.6 1.6E-16 5.3E-21 153.5 3.7 153 47-226 37-233 (361)
164 1zun_B Sulfate adenylate trans 99.6 2.9E-15 9.8E-20 148.1 11.6 151 43-217 20-215 (434)
165 1jny_A EF-1-alpha, elongation 99.6 4.4E-16 1.5E-20 154.0 5.5 157 45-218 4-205 (435)
166 3lxw_A GTPase IMAP family memb 99.6 4.4E-15 1.5E-19 135.8 10.6 159 45-226 19-208 (247)
167 3t5d_A Septin-7; GTP-binding p 99.6 1.9E-15 6.6E-20 140.3 7.8 155 46-225 7-203 (274)
168 1g7s_A Translation initiation 99.6 6E-15 2.1E-19 150.6 11.9 151 47-225 5-217 (594)
169 2elf_A Protein translation elo 99.6 2.9E-15 9.8E-20 144.9 8.0 143 49-226 23-180 (370)
170 1r5b_A Eukaryotic peptide chai 99.6 3.3E-16 1.1E-20 156.2 1.4 149 44-217 40-243 (467)
171 3avx_A Elongation factor TS, e 99.6 5.9E-15 2E-19 157.8 9.6 157 44-225 293-485 (1289)
172 1zo1_I IF2, translation initia 99.5 2E-16 6.7E-21 158.1 -2.4 147 47-223 4-164 (501)
173 1f60_A Elongation factor EEF1A 99.5 1.2E-15 4.1E-20 151.8 3.1 143 46-216 6-202 (458)
174 3izq_1 HBS1P, elongation facto 99.5 3.4E-15 1.2E-19 153.2 6.0 149 44-216 164-362 (611)
175 2aka_B Dynamin-1; fusion prote 99.5 2.2E-15 7.4E-20 141.1 2.4 110 90-224 125-251 (299)
176 2dy1_A Elongation factor G; tr 99.5 4.8E-14 1.7E-18 146.2 12.0 110 46-180 8-139 (665)
177 1pui_A ENGB, probable GTP-bind 99.5 4.4E-14 1.5E-18 124.9 9.1 151 45-225 24-198 (210)
178 3mca_A HBS1, elongation factor 99.5 5.9E-15 2E-19 151.0 3.8 164 38-225 168-396 (592)
179 3def_A T7I23.11 protein; chlor 99.4 1.7E-13 5.7E-18 126.3 9.3 113 46-182 35-166 (262)
180 2h5e_A Peptide chain release f 99.4 5.7E-13 2E-17 134.5 12.6 112 46-182 12-149 (529)
181 1dar_A EF-G, elongation factor 99.4 4.8E-13 1.7E-17 139.3 12.1 111 43-182 8-144 (691)
182 2qnr_A Septin-2, protein NEDD5 99.4 4.2E-14 1.4E-18 133.1 3.2 153 47-226 18-214 (301)
183 2qag_C Septin-7; cell cycle, c 99.4 3.4E-13 1.2E-17 132.1 8.6 153 47-225 31-226 (418)
184 3t34_A Dynamin-related protein 99.4 9E-14 3.1E-18 134.0 3.7 107 91-221 137-256 (360)
185 1h65_A Chloroplast outer envel 99.4 6.3E-13 2.1E-17 122.9 9.0 115 46-182 38-169 (270)
186 2rdo_7 EF-G, elongation factor 99.4 2.2E-12 7.6E-17 134.4 14.0 110 45-181 8-148 (704)
187 2j69_A Bacterial dynamin-like 99.4 6.3E-13 2.2E-17 138.4 9.8 111 91-226 175-325 (695)
188 1udx_A The GTP-binding protein 99.4 2.6E-12 8.7E-17 125.8 12.4 152 49-226 159-325 (416)
189 1jwy_B Dynamin A GTPase domain 99.4 8.1E-13 2.8E-17 124.5 8.5 111 90-225 131-261 (315)
190 2xex_A Elongation factor G; GT 99.4 1.9E-12 6.3E-17 134.9 11.2 110 44-182 7-142 (693)
191 3h2y_A GTPase family protein; 99.3 4.6E-13 1.6E-17 129.4 5.1 96 99-223 55-157 (368)
192 2hf9_A Probable hydrogenase ni 99.3 5.8E-15 2E-19 132.3 -9.4 57 168-225 165-223 (226)
193 1wxq_A GTP-binding protein; st 99.3 9.1E-12 3.1E-16 121.4 11.6 168 48-218 1-262 (397)
194 1puj_A YLQF, conserved hypothe 99.3 7.9E-13 2.7E-17 123.1 3.1 138 95-321 4-144 (282)
195 1n0u_A EF-2, elongation factor 99.3 8E-12 2.7E-16 132.7 10.5 121 45-190 17-173 (842)
196 2wsm_A Hydrogenase expression/ 99.3 4.5E-12 1.5E-16 113.0 6.8 146 47-226 30-214 (221)
197 3ec1_A YQEH GTPase; atnos1, at 99.2 1.8E-12 6.2E-17 125.3 3.1 98 98-224 56-160 (369)
198 2x2e_A Dynamin-1; nitration, h 99.2 2.7E-13 9.4E-18 130.3 -2.9 108 90-222 130-254 (353)
199 4dkx_A RAS-related protein RAB 99.2 2.9E-12 1E-16 114.6 0.9 60 295-362 11-70 (216)
200 3l82_B F-box only protein 4; T 99.1 7E-11 2.4E-15 103.8 6.8 111 97-227 109-224 (227)
201 2qpt_A EH domain-containing pr 99.1 8.1E-11 2.8E-15 119.4 8.0 119 39-182 57-233 (550)
202 3cnl_A YLQF, putative uncharac 99.1 6.3E-12 2.1E-16 115.8 -0.2 140 106-363 14-153 (262)
203 1jal_A YCHF protein; nucleotid 99.1 8.2E-10 2.8E-14 105.8 13.9 159 48-209 3-240 (363)
204 3p32_A Probable GTPase RV1496/ 99.1 7.8E-11 2.7E-15 113.2 5.1 103 90-226 172-284 (355)
205 1t9h_A YLOQ, probable GTPase E 99.1 1.7E-11 5.7E-16 115.2 0.2 93 101-218 74-169 (307)
206 2dby_A GTP-binding protein; GD 99.0 7.5E-10 2.6E-14 106.6 8.5 168 48-219 2-255 (368)
207 3vqt_A RF-3, peptide chain rel 99.0 8.5E-10 2.9E-14 111.7 8.3 74 82-182 94-167 (548)
208 3l2o_B F-box only protein 4; s 99.0 6.7E-10 2.3E-14 102.1 6.6 108 97-227 194-309 (312)
209 1yrb_A ATP(GTP)binding protein 98.9 1.6E-09 5.4E-14 99.0 7.3 109 90-225 109-256 (262)
210 2rcn_A Probable GTPase ENGC; Y 98.9 7E-10 2.4E-14 106.1 4.8 86 110-219 127-212 (358)
211 2www_A Methylmalonic aciduria 98.9 1.1E-08 3.8E-13 97.9 11.8 102 90-225 167-278 (349)
212 3zvr_A Dynamin-1; hydrolase, D 98.8 5.3E-09 1.8E-13 108.8 7.2 106 91-223 151-275 (772)
213 2p67_A LAO/AO transport system 98.8 6.9E-09 2.4E-13 99.0 7.1 103 90-225 149-260 (341)
214 4fn5_A EF-G 1, elongation fact 98.8 3.8E-08 1.3E-12 102.8 13.2 69 88-181 83-151 (709)
215 3j25_A Tetracycline resistance 98.7 2.1E-09 7E-14 111.0 2.1 70 88-182 65-134 (638)
216 3c5c_A RAS-like protein 12; GD 98.7 3.9E-09 1.3E-13 91.4 2.6 60 294-362 18-77 (187)
217 2fu5_C RAS-related protein RAB 98.7 7.6E-09 2.6E-13 88.7 3.4 61 295-363 6-66 (183)
218 2ew1_A RAS-related protein RAB 98.7 6.6E-09 2.2E-13 91.4 2.4 62 293-362 22-83 (201)
219 2oil_A CATX-8, RAS-related pro 98.7 7.6E-09 2.6E-13 89.7 2.8 63 292-362 20-82 (193)
220 2hup_A RAS-related protein RAB 98.6 5E-09 1.7E-13 91.9 1.3 61 294-362 26-86 (201)
221 2iwr_A Centaurin gamma 1; ANK 98.6 8.4E-09 2.9E-13 88.0 2.4 57 296-362 6-62 (178)
222 2il1_A RAB12; G-protein, GDP, 98.6 8.9E-09 3E-13 89.5 2.5 64 291-362 20-83 (192)
223 1oix_A RAS-related protein RAB 98.6 1E-08 3.5E-13 89.2 2.5 60 295-362 27-86 (191)
224 3reg_A RHO-like small GTPase; 98.6 1.1E-08 3.7E-13 88.9 2.4 60 294-362 20-79 (194)
225 3ihw_A Centg3; RAS, centaurin, 98.6 1.3E-08 4.3E-13 88.1 2.7 59 294-362 17-75 (184)
226 3q3j_B RHO-related GTP-binding 98.6 9.4E-09 3.2E-13 91.1 1.9 60 294-362 24-83 (214)
227 2a5j_A RAS-related protein RAB 98.6 1.2E-08 4.2E-13 88.4 2.4 62 293-362 17-78 (191)
228 2y8e_A RAB-protein 6, GH09086P 98.6 1.3E-08 4.3E-13 86.6 2.3 59 296-362 13-71 (179)
229 1z06_A RAS-related protein RAB 98.6 1.2E-08 3.9E-13 88.3 2.0 59 296-362 19-77 (189)
230 1z08_A RAS-related protein RAB 98.6 1.3E-08 4.3E-13 85.9 1.9 60 295-362 4-63 (170)
231 2gf9_A RAS-related protein RAB 98.6 1.9E-08 6.4E-13 86.9 2.8 62 293-362 18-79 (189)
232 4a9a_A Ribosome-interacting GT 98.6 1.5E-06 5E-11 83.7 16.2 176 18-218 37-240 (376)
233 1wms_A RAB-9, RAB9, RAS-relate 98.6 1.7E-08 5.9E-13 85.7 2.2 60 295-362 5-64 (177)
234 3tkl_A RAS-related protein RAB 98.6 2.1E-08 7.2E-13 86.8 2.7 60 295-362 14-73 (196)
235 1gwn_A RHO-related GTP-binding 98.5 1.7E-08 5.7E-13 89.0 1.8 60 294-362 25-84 (205)
236 3l0i_B RAS-related protein RAB 98.5 1.7E-08 6E-13 88.0 1.8 61 294-362 30-90 (199)
237 2hxs_A RAB-26, RAS-related pro 98.5 1E-08 3.4E-13 87.3 0.2 59 296-362 5-64 (178)
238 3cpj_B GTP-binding protein YPT 98.5 1.8E-08 6E-13 89.8 1.5 60 295-362 11-70 (223)
239 3cbq_A GTP-binding protein REM 98.5 1.9E-08 6.4E-13 87.9 1.6 61 294-362 20-80 (195)
240 2p5s_A RAS and EF-hand domain 98.5 1.7E-08 5.7E-13 88.2 1.2 60 295-362 26-85 (199)
241 2j0v_A RAC-like GTP-binding pr 98.5 2.3E-08 7.9E-13 88.0 2.0 58 296-362 8-65 (212)
242 1z2a_A RAS-related protein RAB 98.5 2.3E-08 7.9E-13 84.0 1.9 59 296-362 4-62 (168)
243 3tw8_B RAS-related protein RAB 98.5 3.5E-08 1.2E-12 84.0 3.0 60 295-362 7-66 (181)
244 2o52_A RAS-related protein RAB 98.5 1.8E-08 6.3E-13 88.1 1.2 61 294-362 22-82 (200)
245 1r2q_A RAS-related protein RAB 98.5 2.9E-08 1E-12 83.4 2.4 59 296-362 5-63 (170)
246 1m7b_A RND3/RHOE small GTP-bin 98.5 2.4E-08 8.3E-13 85.9 1.9 59 295-362 5-63 (184)
247 2bcg_Y Protein YP2, GTP-bindin 98.5 2.7E-08 9.1E-13 87.2 2.2 60 295-362 6-65 (206)
248 2f9l_A RAB11B, member RAS onco 98.5 2.5E-08 8.6E-13 87.1 2.0 59 296-362 4-62 (199)
249 2bme_A RAB4A, RAS-related prot 98.5 3E-08 1E-12 85.0 2.5 60 295-362 8-67 (186)
250 2q3h_A RAS homolog gene family 98.5 2.6E-08 9E-13 86.8 2.1 59 295-362 18-76 (201)
251 1x3s_A RAS-related protein RAB 98.5 3.1E-08 1.1E-12 85.5 2.5 60 295-362 13-72 (195)
252 1z0f_A RAB14, member RAS oncog 98.5 3E-08 1E-12 84.2 2.3 61 294-362 12-72 (179)
253 1zbd_A Rabphilin-3A; G protein 98.5 3.6E-08 1.2E-12 86.1 2.8 60 295-362 6-65 (203)
254 1ek0_A Protein (GTP-binding pr 98.5 3.2E-08 1.1E-12 83.1 2.4 58 297-362 3-60 (170)
255 3kkq_A RAS-related protein M-R 98.5 3.6E-08 1.2E-12 84.4 2.6 60 294-362 15-74 (183)
256 1g16_A RAS-related protein SEC 98.5 2.3E-08 7.9E-13 84.2 0.9 58 297-362 3-60 (170)
257 2yc2_C IFT27, small RAB-relate 98.5 4.4E-08 1.5E-12 85.5 2.8 59 296-362 19-81 (208)
258 2fg5_A RAB-22B, RAS-related pr 98.5 3.2E-08 1.1E-12 85.8 1.9 60 295-362 21-80 (192)
259 2atx_A Small GTP binding prote 98.5 3.4E-08 1.2E-12 85.5 1.9 59 295-362 16-74 (194)
260 1vg8_A RAS-related protein RAB 98.5 4E-08 1.4E-12 85.8 2.1 60 295-362 6-65 (207)
261 2efe_B Small GTP-binding prote 98.5 3.7E-08 1.3E-12 84.0 1.8 61 294-362 9-69 (181)
262 2fn4_A P23, RAS-related protei 98.5 5E-08 1.7E-12 82.9 2.6 58 296-362 8-65 (181)
263 2g3y_A GTP-binding protein GEM 98.5 3.4E-08 1.2E-12 87.7 1.6 59 295-362 35-95 (211)
264 3t5g_A GTP-binding protein RHE 98.5 4.6E-08 1.6E-12 83.6 2.2 58 296-362 5-62 (181)
265 3dz8_A RAS-related protein RAB 98.5 9.7E-09 3.3E-13 89.0 -2.1 64 292-363 18-81 (191)
266 2f7s_A C25KG, RAS-related prot 98.5 2.8E-08 9.5E-13 87.8 0.8 61 294-362 22-92 (217)
267 1z0j_A RAB-22, RAS-related pro 98.4 5.5E-08 1.9E-12 81.8 2.5 59 296-362 5-63 (170)
268 3gj0_A GTP-binding nuclear pro 98.4 4.4E-08 1.5E-12 86.9 1.8 61 294-362 12-72 (221)
269 2qm8_A GTPase/ATPase; G protei 98.4 5E-07 1.7E-11 86.0 9.1 103 90-225 148-260 (337)
270 3clv_A RAB5 protein, putative; 98.4 5.4E-08 1.9E-12 84.2 2.0 50 296-353 6-55 (208)
271 2g6b_A RAS-related protein RAB 98.4 6.6E-08 2.2E-12 82.3 2.5 60 295-362 8-68 (180)
272 1c1y_A RAS-related protein RAP 98.4 5.9E-08 2E-12 81.3 2.0 57 297-362 3-59 (167)
273 2zej_A Dardarin, leucine-rich 98.4 2.7E-08 9.3E-13 85.7 -0.2 58 297-362 2-64 (184)
274 2j1l_A RHO-related GTP-binding 98.4 6.5E-08 2.2E-12 85.5 2.3 59 296-363 33-91 (214)
275 2atv_A RERG, RAS-like estrogen 98.4 7.3E-08 2.5E-12 83.7 2.6 58 296-362 27-84 (196)
276 1mh1_A RAC1; GTP-binding, GTPa 98.4 6.8E-08 2.3E-12 82.6 2.3 57 297-362 5-61 (186)
277 3bc1_A RAS-related protein RAB 98.4 7.4E-08 2.5E-12 82.8 2.4 60 295-362 9-78 (195)
278 3t1o_A Gliding protein MGLA; G 98.4 3.1E-08 1.1E-12 85.5 -0.0 60 294-362 11-82 (198)
279 3cph_A RAS-related protein SEC 98.4 7.6E-08 2.6E-12 84.4 2.2 59 296-362 19-77 (213)
280 2a9k_A RAS-related protein RAL 98.4 9.8E-08 3.3E-12 81.6 2.6 59 295-362 16-74 (187)
281 2bov_A RAla, RAS-related prote 98.4 1E-07 3.4E-12 83.1 2.7 59 295-362 12-70 (206)
282 2gco_A H9, RHO-related GTP-bin 98.4 1.2E-07 4E-12 82.9 3.0 58 296-362 24-81 (201)
283 3con_A GTPase NRAS; structural 98.4 1E-07 3.5E-12 82.1 2.6 60 294-362 18-77 (190)
284 1kao_A RAP2A; GTP-binding prot 98.4 1.1E-07 3.7E-12 79.5 2.6 57 297-362 3-59 (167)
285 2fv8_A H6, RHO-related GTP-bin 98.4 8.2E-08 2.8E-12 84.3 1.9 59 295-362 23-81 (207)
286 3oes_A GTPase rhebl1; small GT 98.4 6.2E-08 2.1E-12 84.6 0.9 59 295-362 22-80 (201)
287 2cjw_A GTP-binding protein GEM 98.4 7.4E-08 2.5E-12 83.8 1.0 58 296-362 5-64 (192)
288 1ky3_A GTP-binding protein YPT 98.4 6E-08 2.1E-12 82.5 0.4 60 295-362 6-66 (182)
289 1u8z_A RAS-related protein RAL 98.3 1.4E-07 4.7E-12 78.9 2.6 57 297-362 4-60 (168)
290 3bwd_D RAC-like GTP-binding pr 98.3 3.5E-08 1.2E-12 84.2 -1.4 58 296-362 7-64 (182)
291 2gf0_A GTP-binding protein DI- 98.3 1.4E-07 4.8E-12 81.7 2.5 58 296-362 7-64 (199)
292 2ohf_A Protein OLA1, GTP-bindi 98.3 2.7E-07 9.2E-12 89.3 4.3 81 47-129 22-132 (396)
293 3th5_A RAS-related C3 botulinu 97.7 7.1E-08 2.4E-12 84.4 0.0 59 295-362 28-86 (204)
294 4gzl_A RAS-related C3 botulinu 98.3 1.3E-07 4.6E-12 82.9 1.6 59 295-362 28-86 (204)
295 2erx_A GTP-binding protein DI- 98.3 2.1E-07 7.3E-12 78.2 2.7 57 297-362 3-59 (172)
296 4dsu_A GTPase KRAS, isoform 2B 98.3 2.2E-07 7.6E-12 79.5 2.6 58 296-362 3-60 (189)
297 3q85_A GTP-binding protein REM 98.3 1.8E-07 6.1E-12 78.7 1.3 58 297-362 2-59 (169)
298 2nzj_A GTP-binding protein REM 98.3 2E-07 6.9E-12 78.8 1.6 58 296-362 3-60 (175)
299 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 4.7E-06 1.6E-10 80.6 11.4 77 47-125 20-127 (392)
300 4djt_A GTP-binding nuclear pro 98.2 3.2E-07 1.1E-11 80.9 2.4 62 293-362 7-69 (218)
301 2ce2_X GTPase HRAS; signaling 98.2 3.3E-07 1.1E-11 76.3 2.3 57 297-362 3-59 (166)
302 4bas_A ADP-ribosylation factor 98.2 1.6E-07 5.5E-12 81.3 0.1 58 293-362 13-71 (199)
303 1zd9_A ADP-ribosylation factor 98.2 1.9E-07 6.5E-12 80.6 0.3 56 295-362 20-75 (188)
304 3c5h_A Glucocorticoid receptor 98.2 1.2E-07 4.2E-12 86.5 -2.0 65 295-360 17-101 (255)
305 2h57_A ADP-ribosylation factor 98.1 4.6E-07 1.6E-11 78.1 1.1 56 295-362 19-75 (190)
306 2h17_A ADP-ribosylation factor 98.1 4.7E-07 1.6E-11 77.5 0.1 56 294-362 18-73 (181)
307 3q72_A GTP-binding protein RAD 98.1 8.3E-07 2.8E-11 74.3 1.4 57 297-363 2-58 (166)
308 2wkq_A NPH1-1, RAS-related C3 98.1 1.2E-06 4E-11 82.3 2.3 57 297-362 155-211 (332)
309 2fh5_B SR-beta, signal recogni 98.0 8.8E-07 3E-11 77.8 0.4 56 296-362 6-62 (214)
310 1zj6_A ADP-ribosylation factor 98.0 1.1E-06 3.6E-11 75.6 0.6 54 296-362 15-68 (187)
311 2wji_A Ferrous iron transport 98.0 1.4E-06 4.7E-11 73.5 0.9 56 297-362 3-58 (165)
312 1f6b_A SAR1; gtpases, N-termin 97.9 1.5E-06 5.2E-11 75.7 0.8 53 297-362 25-77 (198)
313 2lkc_A Translation initiation 97.9 1.7E-06 5.9E-11 73.2 1.1 56 297-362 8-63 (178)
314 2wjg_A FEOB, ferrous iron tran 97.9 2E-06 6.9E-11 73.6 1.5 56 297-362 7-62 (188)
315 1moz_A ARL1, ADP-ribosylation 97.9 1.7E-06 5.9E-11 73.7 0.9 55 296-363 17-71 (183)
316 3r7w_B Gtpase2, GTP-binding pr 97.9 9.8E-07 3.4E-11 83.2 -1.0 51 299-362 1-54 (331)
317 1r8s_A ADP-ribosylation factor 97.9 1.3E-06 4.6E-11 72.8 -0.6 52 298-362 1-52 (164)
318 1fzq_A ADP-ribosylation factor 97.9 1.7E-06 5.9E-11 74.1 0.0 54 296-362 15-68 (181)
319 1ksh_A ARF-like protein 2; sma 97.9 3.3E-06 1.1E-10 72.2 1.8 54 296-362 17-70 (186)
320 3llu_A RAS-related GTP-binding 97.9 1.1E-06 3.7E-11 76.3 -1.4 59 293-362 16-77 (196)
321 1m2o_B GTP-binding protein SAR 97.9 2.6E-06 8.7E-11 73.7 0.9 53 297-362 23-75 (190)
322 3t5d_A Septin-7; GTP-binding p 97.9 2.5E-06 8.6E-11 78.5 0.7 60 295-362 6-73 (274)
323 1upt_A ARL1, ADP-ribosylation 97.9 2.9E-06 1E-10 71.2 1.0 53 297-362 7-59 (171)
324 2b6h_A ADP-ribosylation factor 97.8 2.9E-06 1E-10 73.4 0.6 54 296-362 28-81 (192)
325 3r7w_A Gtpase1, GTP-binding pr 97.8 4.5E-06 1.5E-10 78.2 1.6 55 297-362 3-60 (307)
326 2x77_A ADP-ribosylation factor 97.8 3.5E-06 1.2E-10 72.3 0.4 54 296-362 21-74 (189)
327 3dpu_A RAB family protein; roc 97.6 6.1E-06 2.1E-10 83.3 -0.6 68 295-362 39-106 (535)
328 3o47_A ADP-ribosylation factor 97.6 1.4E-05 4.8E-10 75.6 1.0 54 296-362 164-217 (329)
329 1svi_A GTP-binding protein YSX 97.6 8.8E-06 3E-10 70.0 -0.7 57 296-363 22-78 (195)
330 2gj8_A MNME, tRNA modification 97.5 1.9E-05 6.6E-10 67.0 1.0 55 297-362 4-60 (172)
331 3ec1_A YQEH GTPase; atnos1, at 97.5 7E-06 2.4E-10 79.0 -2.2 135 49-213 164-318 (369)
332 2dyk_A GTP-binding protein; GT 97.4 2.5E-05 8.6E-10 64.6 0.8 56 298-363 2-58 (161)
333 2cxx_A Probable GTP-binding pr 97.4 1.9E-05 6.5E-10 67.4 -0.5 34 298-331 2-35 (190)
334 2j37_W Signal recognition part 97.4 8.3E-05 2.9E-09 74.2 4.1 101 90-223 184-310 (504)
335 2qu8_A Putative nucleolar GTP- 97.3 4.7E-05 1.6E-09 67.6 1.5 58 296-363 28-85 (228)
336 2qag_A Septin-2, protein NEDD5 97.3 3.6E-05 1.2E-09 73.7 0.7 62 295-364 35-105 (361)
337 3lxx_A GTPase IMAP family memb 97.3 3.9E-05 1.3E-09 68.8 0.7 61 295-363 27-87 (239)
338 3lvq_E ARF-GAP with SH3 domain 97.3 3.7E-05 1.3E-09 76.7 0.5 55 295-362 320-374 (497)
339 3h2y_A GTPase family protein; 97.3 9.6E-06 3.3E-10 78.0 -4.4 129 48-207 161-311 (368)
340 3k53_A Ferrous iron transport 97.2 6.4E-05 2.2E-09 68.8 0.9 56 297-362 3-58 (271)
341 2qag_B Septin-6, protein NEDD5 97.2 0.00028 9.6E-09 68.8 5.4 54 47-100 42-105 (427)
342 3a1s_A Iron(II) transport prot 97.2 7.3E-05 2.5E-09 68.1 1.2 57 296-362 4-60 (258)
343 2hf9_A Probable hydrogenase ni 97.2 1.6E-05 5.5E-10 70.3 -3.2 67 297-365 38-111 (226)
344 1tq4_A IIGP1, interferon-induc 97.2 0.0043 1.5E-07 60.2 13.5 151 48-227 70-254 (413)
345 1nrj_B SR-beta, signal recogni 97.2 2.2E-05 7.6E-10 68.9 -2.8 39 296-334 11-52 (218)
346 3lxw_A GTPase IMAP family memb 97.1 5.6E-05 1.9E-09 68.4 -0.7 60 295-362 19-78 (247)
347 3iby_A Ferrous iron transport 97.1 8.5E-05 2.9E-09 67.6 0.4 55 298-362 2-56 (256)
348 3pqc_A Probable GTP-binding pr 97.1 0.00013 4.4E-09 62.3 1.1 37 296-333 22-58 (195)
349 2ged_A SR-beta, signal recogni 97.1 2.4E-05 8.1E-10 67.2 -3.7 36 296-331 47-85 (193)
350 3b1v_A Ferrous iron uptake tra 97.0 7.4E-05 2.5E-09 68.7 -1.0 54 297-362 3-57 (272)
351 2xtp_A GTPase IMAP family memb 97.0 0.00017 5.7E-09 65.4 1.0 58 296-363 21-80 (260)
352 1pui_A ENGB, probable GTP-bind 96.9 0.00011 3.8E-09 63.9 -0.5 37 297-333 26-62 (210)
353 4dhe_A Probable GTP-binding pr 96.9 7.9E-05 2.7E-09 65.5 -1.6 58 297-362 29-87 (223)
354 3i8s_A Ferrous iron transport 96.9 0.00018 6.1E-09 66.1 0.5 56 297-362 3-58 (274)
355 2qnr_A Septin-2, protein NEDD5 96.9 0.00012 4.2E-09 68.2 -0.8 62 295-364 16-86 (301)
356 3def_A T7I23.11 protein; chlor 96.8 0.0003 1E-08 64.0 1.0 56 296-362 35-92 (262)
357 1h65_A Chloroplast outer envel 96.7 0.00026 8.9E-09 64.7 -0.3 58 296-362 38-95 (270)
358 3gee_A MNME, tRNA modification 96.6 0.00047 1.6E-08 68.3 1.5 56 297-363 233-290 (476)
359 3qq5_A Small GTP-binding prote 96.6 0.00075 2.6E-08 65.9 2.4 59 295-362 32-91 (423)
360 3cnl_A YLQF, putative uncharac 96.6 0.0006 2.1E-08 62.2 1.6 52 48-102 100-156 (262)
361 2qag_C Septin-7; cell cycle, c 96.5 0.00054 1.9E-08 66.7 1.1 63 294-364 28-98 (418)
362 3sop_A Neuronal-specific septi 96.4 0.01 3.4E-07 54.2 9.0 22 48-69 3-27 (270)
363 1xzp_A Probable tRNA modificat 96.4 0.00046 1.6E-08 68.5 -0.5 55 298-363 244-300 (482)
364 1puj_A YLQF, conserved hypothe 96.4 0.0029 9.9E-08 58.3 4.8 53 46-101 119-176 (282)
365 3geh_A MNME, tRNA modification 96.2 0.00057 1.9E-08 67.5 -0.9 56 297-363 224-281 (462)
366 1jal_A YCHF protein; nucleotid 96.0 0.00079 2.7E-08 64.3 -0.9 57 298-364 3-76 (363)
367 2ohf_A Protein OLA1, GTP-bindi 95.9 0.00086 2.9E-08 64.7 -1.4 61 297-365 22-97 (396)
368 1wf3_A GTP-binding protein; GT 95.9 0.0016 5.3E-08 60.6 0.4 55 297-362 7-63 (301)
369 3dm5_A SRP54, signal recogniti 95.7 0.0063 2.1E-07 59.5 3.8 91 90-214 183-279 (443)
370 2qtf_A Protein HFLX, GTP-bindi 95.6 0.0018 6E-08 62.0 -0.3 54 298-363 179-235 (364)
371 3iev_A GTP-binding protein ERA 95.3 0.0035 1.2E-07 58.4 0.5 28 296-323 9-36 (308)
372 1wxq_A GTP-binding protein; st 95.1 0.0049 1.7E-07 59.6 1.0 24 298-321 1-24 (397)
373 3p26_A Elongation factor 1 alp 95.0 0.0013 4.6E-08 65.2 -3.4 26 295-320 31-56 (483)
374 2aka_B Dynamin-1; fusion prote 94.9 0.0024 8.3E-08 58.6 -1.8 27 297-323 26-52 (299)
375 1bif_A 6-phosphofructo-2-kinas 94.8 0.0012 4.2E-08 65.3 -4.3 94 47-141 39-147 (469)
376 3j2k_7 ERF3, eukaryotic polype 94.8 0.011 3.7E-07 57.9 2.4 25 295-319 15-39 (439)
377 3izy_P Translation initiation 94.8 0.0011 3.9E-08 66.5 -4.8 55 298-362 5-60 (537)
378 1s0u_A EIF-2-gamma, translatio 94.7 0.0088 3E-07 57.9 1.6 42 296-337 7-53 (408)
379 2e87_A Hypothetical protein PH 94.7 0.0074 2.5E-07 57.3 0.9 55 297-363 167-223 (357)
380 3kl4_A SRP54, signal recogniti 94.7 0.025 8.6E-07 55.1 4.6 90 90-213 180-277 (433)
381 2dby_A GTP-binding protein; GD 94.5 0.0015 5.2E-08 62.5 -4.5 69 298-366 2-81 (368)
382 2x2e_A Dynamin-1; nitration, h 94.4 0.0043 1.5E-07 58.9 -1.5 26 298-323 32-57 (353)
383 2v3c_C SRP54, signal recogniti 94.1 0.19 6.4E-06 48.9 9.4 84 90-206 181-272 (432)
384 1kk1_A EIF2gamma; initiation o 94.0 0.018 6.3E-07 55.6 2.0 43 295-337 8-55 (410)
385 1ni3_A YCHF GTPase, YCHF GTP-b 94.0 0.01 3.5E-07 57.2 0.1 62 297-366 20-97 (392)
386 1wb1_A Translation elongation 93.7 0.017 5.8E-07 57.2 1.1 54 296-361 18-80 (482)
387 1lnz_A SPO0B-associated GTP-bi 93.4 0.021 7.1E-07 54.0 1.2 57 299-366 160-218 (342)
388 1ega_A Protein (GTP-binding pr 92.8 0.02 7E-07 52.9 0.1 26 298-323 9-34 (301)
389 2c78_A Elongation factor TU-A; 92.5 0.01 3.6E-07 57.3 -2.4 24 296-319 10-33 (405)
390 1f5n_A Interferon-induced guan 92.5 0.087 3E-06 53.3 4.3 55 46-102 37-103 (592)
391 3izq_1 HBS1P, elongation facto 92.2 0.015 5.2E-07 59.3 -1.7 25 296-320 166-190 (611)
392 2h5e_A Peptide chain release f 92.2 0.018 6.2E-07 57.7 -1.2 59 296-362 12-90 (529)
393 2dy1_A Elongation factor G; tr 92.1 0.02 6.7E-07 59.1 -1.1 66 297-362 9-82 (665)
394 3mca_A HBS1, elongation factor 92.0 0.022 7.4E-07 57.9 -0.9 24 295-318 175-198 (592)
395 3cb4_D GTP-binding protein LEP 91.8 0.038 1.3E-06 56.2 0.7 58 297-362 4-79 (599)
396 1zo1_I IF2, translation initia 91.6 0.013 4.5E-07 58.2 -2.9 56 297-362 4-59 (501)
397 3szr_A Interferon-induced GTP- 91.5 0.2 7E-06 50.9 5.7 22 49-70 47-71 (608)
398 1n0u_A EF-2, elongation factor 91.5 0.038 1.3E-06 58.5 0.3 25 296-320 18-42 (842)
399 3sjy_A Translation initiation 91.4 0.025 8.5E-07 54.6 -1.1 25 296-320 7-31 (403)
400 3tr5_A RF-3, peptide chain rel 91.3 0.012 4.2E-07 59.0 -3.6 23 296-318 12-34 (528)
401 3q5d_A Atlastin-1; G protein, 91.0 0.22 7.4E-06 48.7 5.1 57 45-101 65-151 (447)
402 1f60_A Elongation factor EEF1A 91.0 0.035 1.2E-06 54.6 -0.6 25 296-320 6-30 (458)
403 1zun_B Sulfate adenylate trans 91.0 0.036 1.2E-06 54.1 -0.5 26 296-321 23-48 (434)
404 3avx_A Elongation factor TS, e 90.8 0.033 1.1E-06 60.4 -0.9 60 295-362 294-367 (1289)
405 1dar_A EF-G, elongation factor 90.7 0.04 1.4E-06 57.0 -0.5 25 295-319 10-34 (691)
406 1jny_A EF-1-alpha, elongation 90.4 0.025 8.6E-07 55.2 -2.3 25 296-320 5-29 (435)
407 1d2e_A Elongation factor TU (E 90.3 0.038 1.3E-06 53.2 -1.0 24 297-320 3-26 (397)
408 1u0l_A Probable GTPase ENGC; p 89.9 0.14 4.9E-06 47.1 2.6 38 312-361 32-70 (301)
409 2elf_A Protein translation elo 89.7 0.043 1.5E-06 52.4 -1.2 46 299-362 23-68 (370)
410 2ywe_A GTP-binding protein LEP 89.0 0.077 2.6E-06 53.9 0.1 23 297-319 6-28 (600)
411 1g7s_A Translation initiation 89.0 0.046 1.6E-06 55.6 -1.6 36 297-332 5-44 (594)
412 4dzz_A Plasmid partitioning pr 88.9 0.69 2.4E-05 39.1 6.1 87 90-203 76-162 (206)
413 1r5b_A Eukaryotic peptide chai 88.8 0.083 2.9E-06 52.0 0.1 24 296-319 42-65 (467)
414 1ko7_A HPR kinase/phosphatase; 88.3 0.19 6.5E-06 46.7 2.2 54 164-225 77-130 (314)
415 3e70_C DPA, signal recognition 88.2 0.22 7.4E-06 46.6 2.6 90 92-215 214-309 (328)
416 3uc9_A Increased recombination 87.9 0.31 1.1E-05 43.1 3.2 26 44-69 26-54 (233)
417 2j69_A Bacterial dynamin-like 87.8 0.071 2.4E-06 55.2 -1.2 34 297-330 69-103 (695)
418 4a9a_A Ribosome-interacting GT 86.7 0.16 5.4E-06 48.5 0.6 58 298-367 73-132 (376)
419 2wsm_A Hydrogenase expression/ 86.6 0.062 2.1E-06 46.5 -2.1 35 297-331 30-64 (221)
420 3t34_A Dynamin-related protein 86.6 0.13 4.3E-06 48.7 -0.1 26 299-324 36-61 (360)
421 1j8m_F SRP54, signal recogniti 86.4 1 3.6E-05 41.3 6.1 92 90-216 181-281 (297)
422 2rdo_7 EF-G, elongation factor 85.3 0.22 7.7E-06 51.5 1.0 24 296-319 9-32 (704)
423 2xex_A Elongation factor G; GT 84.5 0.18 6.3E-06 52.1 -0.1 24 296-319 9-32 (693)
424 1jwy_B Dynamin A GTPase domain 84.2 0.13 4.5E-06 47.2 -1.2 25 298-322 25-49 (315)
425 3cwq_A Para family chromosome 83.1 4.7 0.00016 34.4 8.5 85 90-203 68-153 (209)
426 1udx_A The GTP-binding protein 83.0 0.2 6.9E-06 48.5 -0.5 23 299-321 159-181 (416)
427 3ea0_A ATPase, para family; al 81.7 11 0.00039 32.4 10.6 86 90-205 119-204 (245)
428 3sop_A Neuronal-specific septi 80.5 0.21 7.1E-06 45.3 -1.3 23 297-319 2-24 (270)
429 2qpt_A EH domain-containing pr 79.7 0.35 1.2E-05 48.6 -0.1 27 297-323 65-91 (550)
430 4ido_A Atlastin-1; GTPase, GTP 78.6 2.8 9.7E-05 40.8 5.9 55 47-101 67-151 (457)
431 3end_A Light-independent proto 78.0 22 0.00074 32.0 11.6 85 90-204 157-242 (307)
432 1wcv_1 SOJ, segregation protei 76.9 7.3 0.00025 34.2 7.8 70 90-180 112-182 (257)
433 1kgd_A CASK, peripheral plasma 74.1 0.37 1.2E-05 40.5 -1.6 21 299-319 7-27 (180)
434 1ye8_A Protein THEP1, hypothet 73.4 0.8 2.8E-05 38.5 0.4 20 299-318 2-21 (178)
435 1f5n_A Interferon-induced guan 72.5 0.87 3E-05 46.0 0.5 25 297-321 38-62 (592)
436 1ex7_A Guanylate kinase; subst 71.1 0.52 1.8E-05 40.2 -1.4 20 300-319 4-23 (186)
437 2www_A Methylmalonic aciduria 70.7 0.59 2E-05 44.0 -1.2 22 298-319 75-96 (349)
438 1ye8_A Protein THEP1, hypothet 69.7 2.4 8.1E-05 35.5 2.6 20 49-68 2-24 (178)
439 2qag_B Septin-6, protein NEDD5 69.6 0.73 2.5E-05 44.6 -0.8 25 298-322 43-67 (427)
440 2xtz_A Guanine nucleotide-bind 69.1 1.1 3.7E-05 42.3 0.3 43 320-362 144-191 (354)
441 3ney_A 55 kDa erythrocyte memb 69.0 0.61 2.1E-05 40.2 -1.4 21 299-319 21-41 (197)
442 1lvg_A Guanylate kinase, GMP k 68.1 1.2 4E-05 38.0 0.3 21 299-319 6-26 (198)
443 4gp7_A Metallophosphoesterase; 67.5 1.2 4.2E-05 36.9 0.3 18 300-317 12-29 (171)
444 3a00_A Guanylate kinase, GMP k 66.6 0.69 2.3E-05 38.9 -1.5 19 300-318 4-22 (186)
445 1kgd_A CASK, peripheral plasma 65.9 3.4 0.00012 34.3 2.8 19 49-67 7-28 (180)
446 2ph1_A Nucleotide-binding prot 65.6 11 0.00036 33.3 6.2 91 89-204 128-224 (262)
447 1bif_A 6-phosphofructo-2-kinas 64.2 0.19 6.4E-06 49.4 -6.3 34 297-331 39-72 (469)
448 1zp6_A Hypothetical protein AT 63.5 4.9 0.00017 33.3 3.3 19 49-67 11-32 (191)
449 3tr0_A Guanylate kinase, GMP k 62.9 4.1 0.00014 34.2 2.7 19 49-67 9-30 (205)
450 3tau_A Guanylate kinase, GMP k 62.9 0.95 3.3E-05 38.9 -1.4 21 299-319 10-30 (208)
451 3a00_A Guanylate kinase, GMP k 62.8 3.8 0.00013 34.2 2.5 18 50-67 4-24 (186)
452 3tr0_A Guanylate kinase, GMP k 62.4 1.7 6E-05 36.6 0.3 21 299-319 9-29 (205)
453 3k9g_A PF-32 protein; ssgcid, 62.2 17 0.00058 31.9 6.9 64 90-178 145-208 (267)
454 3asz_A Uridine kinase; cytidin 62.1 4.7 0.00016 34.1 3.0 20 48-67 7-29 (211)
455 1lvg_A Guanylate kinase, GMP k 62.1 4 0.00014 34.6 2.5 19 49-67 6-27 (198)
456 1s96_A Guanylate kinase, GMP k 61.9 1.8 6.2E-05 37.7 0.3 21 299-319 18-38 (219)
457 1znw_A Guanylate kinase, GMP k 61.7 1.8 6.3E-05 36.9 0.3 19 300-318 23-41 (207)
458 1g3q_A MIND ATPase, cell divis 61.1 39 0.0013 28.7 8.9 83 90-203 112-194 (237)
459 3ney_A 55 kDa erythrocyte memb 60.8 5.1 0.00017 34.3 2.9 20 48-67 20-42 (197)
460 3kb2_A SPBC2 prophage-derived 60.7 1.3 4.5E-05 36.1 -0.8 20 299-318 3-22 (173)
461 1z6g_A Guanylate kinase; struc 60.7 2 6.7E-05 37.2 0.3 21 299-319 25-45 (218)
462 3c8u_A Fructokinase; YP_612366 60.4 4.8 0.00016 34.2 2.7 20 48-67 23-45 (208)
463 2qor_A Guanylate kinase; phosp 60.3 1.3 4.3E-05 37.8 -1.0 18 300-317 15-32 (204)
464 1hyq_A MIND, cell division inh 59.4 34 0.0011 29.7 8.3 83 90-203 111-193 (263)
465 1cp2_A CP2, nitrogenase iron p 59.1 74 0.0025 27.5 10.6 88 90-203 116-205 (269)
466 1zp6_A Hypothetical protein AT 59.1 2 6.8E-05 35.8 0.0 21 299-319 11-31 (191)
467 1htw_A HI0065; nucleotide-bind 59.0 5.4 0.00018 32.7 2.7 20 49-68 35-57 (158)
468 3fb4_A Adenylate kinase; psych 58.2 1.5 5.3E-05 37.4 -0.9 21 298-318 1-21 (216)
469 1z6g_A Guanylate kinase; struc 57.5 5.2 0.00018 34.5 2.5 20 49-68 25-47 (218)
470 1znw_A Guanylate kinase, GMP k 57.5 5.7 0.00019 33.7 2.7 20 49-68 22-44 (207)
471 3c8u_A Fructokinase; YP_612366 57.5 2.8 9.6E-05 35.7 0.7 20 298-317 23-42 (208)
472 3dl0_A Adenylate kinase; phosp 57.2 1.6 5.6E-05 37.3 -0.9 21 298-318 1-21 (216)
473 1odf_A YGR205W, hypothetical 3 56.9 4 0.00014 37.1 1.7 49 207-317 3-51 (290)
474 1s96_A Guanylate kinase, GMP k 56.7 6 0.0002 34.3 2.7 20 49-68 18-40 (219)
475 4f4c_A Multidrug resistance pr 56.6 2.9 0.0001 46.4 0.8 28 299-331 1107-1134(1321)
476 3kjh_A CO dehydrogenase/acetyl 56.3 28 0.00095 29.7 7.2 62 91-178 133-194 (254)
477 1htw_A HI0065; nucleotide-bind 56.3 2.6 8.9E-05 34.7 0.3 21 299-319 35-55 (158)
478 1knq_A Gluconate kinase; ALFA/ 56.1 3.4 0.00012 33.8 1.0 20 298-317 9-28 (175)
479 3tif_A Uncharacterized ABC tra 55.8 2.7 9.1E-05 37.0 0.3 15 300-314 34-48 (235)
480 3p32_A Probable GTPase RV1496/ 55.8 2 6.8E-05 40.3 -0.6 22 298-319 80-101 (355)
481 3q5d_A Atlastin-1; G protein, 55.6 3.6 0.00012 40.0 1.2 22 298-319 68-89 (447)
482 3lnc_A Guanylate kinase, GMP k 55.4 3.2 0.00011 36.0 0.7 15 300-314 30-44 (231)
483 3fb4_A Adenylate kinase; psych 55.4 6 0.0002 33.6 2.5 19 49-67 2-23 (216)
484 3ec2_A DNA replication protein 55.0 2.5 8.5E-05 35.0 -0.0 15 300-314 41-55 (180)
485 1knx_A Probable HPR(Ser) kinas 55.0 5.4 0.00018 36.8 2.2 53 165-225 81-133 (312)
486 2jaq_A Deoxyguanosine kinase; 54.8 6.3 0.00022 32.8 2.5 18 49-66 2-22 (205)
487 3tau_A Guanylate kinase, GMP k 54.7 6.2 0.00021 33.6 2.5 20 49-68 10-32 (208)
488 2kjq_A DNAA-related protein; s 54.6 3.4 0.00012 33.4 0.7 21 299-319 38-58 (149)
489 2bdt_A BH3686; alpha-beta prot 54.6 2.9 9.8E-05 34.9 0.3 15 300-314 5-19 (189)
490 3q9l_A Septum site-determining 54.5 22 0.00076 30.7 6.2 73 89-179 113-185 (260)
491 2z0h_A DTMP kinase, thymidylat 54.4 6.4 0.00022 32.6 2.5 19 49-67 2-23 (197)
492 3kb2_A SPBC2 prophage-derived 53.9 7.3 0.00025 31.4 2.7 27 199-226 140-166 (173)
493 3dl0_A Adenylate kinase; phosp 53.8 6.6 0.00023 33.3 2.5 19 49-67 2-23 (216)
494 2j41_A Guanylate kinase; GMP, 53.6 7.1 0.00024 32.6 2.7 20 49-68 8-30 (207)
495 2j41_A Guanylate kinase; GMP, 53.4 3.1 0.0001 35.0 0.3 21 299-319 8-28 (207)
496 1np6_A Molybdopterin-guanine d 53.2 1.7 5.9E-05 36.4 -1.4 19 300-318 9-27 (174)
497 3lw7_A Adenylate kinase relate 53.1 3.8 0.00013 33.0 0.8 17 297-313 1-17 (179)
498 3ohm_A Guanine nucleotide-bind 53.1 7.8 0.00027 35.9 3.0 21 45-65 5-28 (327)
499 1knq_A Gluconate kinase; ALFA/ 53.0 10 0.00035 30.8 3.5 19 49-67 10-31 (175)
500 1yrb_A ATP(GTP)binding protein 52.8 3.7 0.00013 36.0 0.7 22 297-318 14-35 (262)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.9e-37 Score=275.35 Aligned_cols=163 Identities=35% Similarity=0.623 Sum_probs=141.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...+|+++||+ |||||++||+.+.|... |+|.++..+.+.+++..+.++||||+|+++|..+++.|++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 34589999998 99999999999999877 9999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||+++++||+.+..|+..+.. ...+++|++|||||+|+.+. +.++.++++++|+.+
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~---------------------~~~~~~piilVgNK~Dl~~~-r~V~~~e~~~~a~~~ 148 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRT---------------------ERGSDVIIMLVGNKTDLADK-RQVSIEEGERKAKEL 148 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH---------------------HHTTSSEEEEEEECTTCGGG-CCSCHHHHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHH---------------------hcCCCCeEEEEeeccchHhc-CcccHHHHhhHHHHh
Confidence 99999999999999999998877 34568999999999999776 789999999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+++|+||||++|.||+++|+.|++.+.....
T Consensus 149 ~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 149 NVMFIETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred CCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999875443
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=3.7e-29 Score=222.30 Aligned_cols=161 Identities=34% Similarity=0.628 Sum_probs=146.2
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|.+..+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45689999997 99999999999988765 8888998889999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 143 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDR---------------------YATSTVLKLLVGNKCDLKDK-RVVEYDVAKEFADAN 143 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTTT-CCSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCccc-cccCHHHHHHHHHHc
Confidence 99999999999999999988876 33467899999999999765 668888999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++++||++|.||+++|++|++.+.+.
T Consensus 144 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 144 KMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888654
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=9e-29 Score=215.21 Aligned_cols=162 Identities=33% Similarity=0.578 Sum_probs=118.0
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 4688999997 99999999999988765 88888888889999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~ 144 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEE---------------------HASADVEKMILGNKCDVNDK-RQVSKERGEKLALDYG 144 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEEC--CCSC-CCSCHHHHHHHHHHHT
T ss_pred EEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECccCCcc-CcCCHHHHHHHHHHcC
Confidence 9999999999999999988876 33467899999999999765 6688899999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
++++++||+++.||+++|++|++.+.++..
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998876544
No 4
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=3.2e-28 Score=210.96 Aligned_cols=163 Identities=54% Similarity=0.854 Sum_probs=145.5
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
.+...++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 3455689999997 99999999999988765 88888888899999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+|+.+..|+..+.. ...+++|+++|+||+|+.+. +.+..+++.++++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~ 145 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQA---------------------QGNPNMVMALAGNKSDLLDA-RKVTAEDAQTYAQ 145 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTTT-CCSCHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECCccccc-ccCCHHHHHHHHH
Confidence 9999999999999999999998877 33468999999999999765 6688889999999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.++++++++||++|.||+++|++|++.+.+.
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 146 ENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp HTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred HcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888643
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.4e-28 Score=218.88 Aligned_cols=164 Identities=30% Similarity=0.586 Sum_probs=147.6
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
.....++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 3445689999997 99999999999988765 88899988999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~ 159 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQ---------------------YASNKVITVLVGNKIDLAER-REVSQQRAEEFSE 159 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CSSCHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCccc-cccCHHHHHHHHH
Confidence 9999999999999999999998876 33467899999999999754 6688889999999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
..+++++++||++|.||+++|++|++.+.++.
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 160 AQDMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp HHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887543
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=218.93 Aligned_cols=163 Identities=33% Similarity=0.549 Sum_probs=141.5
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 345688999997 99999999999988765 888889888999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
|+|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~~ 163 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRK---------------------YAGSNIVQLLIGNKSDLSEL-REVSLAEAQSLAEH 163 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCccccc-cccCHHHHHHHHHH
Confidence 999999999999999999988877 33467999999999999764 66888999999999
Q ss_pred cCC-eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 198 NGL-LFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 198 ~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+++ +++++||+++.||+++|++|++.+.++.
T Consensus 164 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 164 YDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999 9999999999999999999999887543
No 7
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=5e-28 Score=212.58 Aligned_cols=164 Identities=41% Similarity=0.673 Sum_probs=146.2
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 345689999997 99999999999998765 888888888999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
++|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~ 155 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQ---------------------HSSSNMVIMLIGNKSDLESR-RDVKREEGEAFARE 155 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccCCc-cccCHHHHHHHHHH
Confidence 999999999999999999988876 34468999999999999764 56888899999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
++++++++||+++.||+++|++|++.+.++..
T Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 156 HGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp HTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876543
No 8
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-28 Score=220.11 Aligned_cols=162 Identities=34% Similarity=0.555 Sum_probs=140.9
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.||||+|+++|..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45688999997 99999999999988765 8888898889999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ....++|++||+||+|+... +.+..+++.++++..
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~ 148 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRE---------------------NADDNVAVGLIGNKSDLAHL-RAVPTEESKTFAQEN 148 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHH---------------------HCC--CEEEEEECCGGGGGG-CCSCHHHHHHHHHHT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH---------------------hCCCCCeEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence 99999999999999999998876 33467899999999999764 568888999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+++++++||+++.||+++|++|++.+.++.
T Consensus 149 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 149 QLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp TCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887543
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=4.1e-28 Score=209.45 Aligned_cols=162 Identities=40% Similarity=0.667 Sum_probs=145.2
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
.....++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 3455689999997 99999999999988765 88888888889999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+++.+..|+..+.. ....++|+++|+||+|+.+. +.+..+++.++++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~ 148 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARN---------------------LTNPNTVIILIGNKADLEAQ-RDVTYEEAKQFAE 148 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccc-cccCHHHHHHHHH
Confidence 9999999999999999999988876 33467899999999999754 5678889999999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.++++++++||+++.||+++|++|++.+.+
T Consensus 149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 149 ENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999987753
No 10
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=215.12 Aligned_cols=165 Identities=25% Similarity=0.426 Sum_probs=143.6
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ 115 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad 115 (373)
.+....++++++|. |||||+++|.++.+... |.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 34456789999997 99999999999987665 666555 467788999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160 116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195 (373)
Q Consensus 116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~ 195 (373)
++++|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..+++.+++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~ 146 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRV--------------------KEDENVPFLLVGNKSDLEDK-RQVSVEEAKNRA 146 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH--------------------TTCSCCCEEEEEECTTCGGG-CCSCHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEeccCcccc-ccccHHHHHHHH
Confidence 999999999999999999999988772 22357899999999999765 568888999999
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+.++++++++||++|.||+++|++|++.+.+++
T Consensus 147 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 147 EQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp HHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999887653
No 11
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=4.8e-28 Score=210.18 Aligned_cols=164 Identities=27% Similarity=0.369 Sum_probs=143.5
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
+...++++++|. |||||+++|+++.+... |++..+ .+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 345789999998 99999999998887765 777777 67888999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
++|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..++++++++.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~ 140 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDM--------------------VGKVQIPIMLVGNKKDLHME-RVISYEEGKALAES 140 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH--------------------C----CCEEEEEECTTCTTT-CCSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECccchhc-ceecHHHHHHHHHH
Confidence 9999999999999999999888662 23357899999999999765 77899999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
++++++++||+++.||+++|++|++.+.+...
T Consensus 141 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 141 WNAAFLESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp TTCEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred hCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998876543
No 12
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=215.36 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=140.0
Q ss_pred cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCc--Cc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc-cchhhcc
Q psy18160 40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFY--PY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT-LAPMYYR 112 (373)
Q Consensus 40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~--~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~-l~~~~~~ 112 (373)
.+++....++++++|. |||||+++|++..+. .. +.+.++..+.+.+++..+.+.+|||+|++++.. ++..+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 3444556789999997 999999999865443 22 667777788889999999999999999998775 7888999
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE 192 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~ 192 (373)
++|++|+|||++++.+|+.+..|+..+... ....++|++|||||+|+.+. +.++.++++
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~ 154 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAG--------------------RPHHDLPVILVGNKSDLARS-REVSLEEGR 154 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHH--------------------STTSCCCEEEEEECTTCTTT-CCSCHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEeechhcccc-CCcCHHHHH
Confidence 999999999999999999999999888762 12257899999999999765 678889999
Q ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
++++.++++++++||+++.||+++|++|++.+.+.
T Consensus 155 ~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 155 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988643
No 13
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=210.42 Aligned_cols=163 Identities=36% Similarity=0.646 Sum_probs=147.6
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... +++.++....+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45678999997 99999999999988766 8888888899999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.+
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 151 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDR---------------------YASENVNKLLVGNKCDLTTK-KVVDYTTAKEFADSL 151 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTTT-CCSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence 99999999999999999998877 34468999999999999776 678888999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+++++++||+++.||+++|++|++.+.++..
T Consensus 152 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 152 GIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999876544
No 14
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=1.2e-27 Score=209.68 Aligned_cols=161 Identities=31% Similarity=0.548 Sum_probs=145.1
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... |+|.++..+.+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 34688999997 99999999999988765 8888888888889999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..++++++++.+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 157 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKT---------------------YSWDNAQVILVGNKCDLEDE-RVVPAEDGRRLADDL 157 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccccc-cCCCHHHHHHHHHHc
Confidence 99999999999999999988877 33468899999999999765 567788899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++++||++|.||+++|++|++.+.++
T Consensus 158 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 158 GFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988654
No 15
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=7e-28 Score=206.04 Aligned_cols=158 Identities=63% Similarity=0.999 Sum_probs=143.3
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 4578999997 99999999999988765 88888888889999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+++.+..|+..+.. ...+++|+++|+||+|+.+. +.+..+++.++++..+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~iilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 142 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQR---------------------QASPNIVIALSGNKADLANK-RAVDFQEAQSYADDNS 142 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHTT
T ss_pred EEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECccCccc-cccCHHHHHHHHHHcC
Confidence 9999999999999999988876 34468999999999999754 5678889999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++++||++|.|++++|++|++.+.
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 LLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999998775
No 16
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=8e-28 Score=207.10 Aligned_cols=162 Identities=25% Similarity=0.295 Sum_probs=133.3
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc--ccccchhhccCCcEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER--YHTLAPMYYRNAQAAI 118 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~--~~~l~~~~~~~ad~ii 118 (373)
..++++++|. |||||+++|++..+... ++|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 3578999997 99999999999988765 888888888899999999999999999988 6777888999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+... ....++|+++|+||+|+.+. +.+..+++..++..+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~--------------------~~~~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~~~ 141 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRT--------------------HQADHVPIILVGNKADLARC-REVSVEEGRACAVVF 141 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHC--------------------C----CCEEEEEECTTCTTT-CCSCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--------------------hccCCCCEEEEEEChhhccc-cccCHHHHHHHHHHc
Confidence 999999999999999999888762 12357899999999999765 668888899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+++++++||++|.||+++|++|++.+..+.
T Consensus 142 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 142 DCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp TSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999886543
No 17
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=1e-27 Score=208.87 Aligned_cols=163 Identities=35% Similarity=0.596 Sum_probs=146.7
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45689999997 99999999999988765 8888888888999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ....++|++||+||+|+... +.+..+++.++++..
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 145 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARM---------------------LASQNIVIILCGNKKDLDAD-REVTFLEASRFAQEN 145 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence 99999999999999999988876 33468899999999999654 568888999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+++++++||+++.||+++|++|++.+.++..
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 146 ELMFLETSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998876544
No 18
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=209.60 Aligned_cols=165 Identities=34% Similarity=0.540 Sum_probs=147.3
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ 115 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad 115 (373)
......++++++|. |||||+++|++..+... |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 33455688999997 99999999999988765 8888898889999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160 116 AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195 (373)
Q Consensus 116 ~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~ 195 (373)
++|+|||++++.+|+.+..|+..+.. ....++|++||+||+|+... +.+..+++.+++
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~ 157 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYD---------------------HAEATIVVMLVGNKSDLSQA-REVPTEEARMFA 157 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHT---------------------TSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCeEEEEEECCCcccc-cccCHHHHHHHH
Confidence 99999999999999999999988876 33467899999999999764 567888999999
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+..+++++++||+++.||+++|++|++.+.++.
T Consensus 158 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 158 ENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887543
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=206.84 Aligned_cols=163 Identities=29% Similarity=0.519 Sum_probs=144.7
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|++..+... |++.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 345689999997 99999999999988755 888888889999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
++|||++++.+++.+..|+..+.. ..+++|++||+||+|+.+. +.+..+++.+++..
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~----------------------~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~ 142 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQ----------------------NCDDVCRILVGNKNDDPER-KVVETEDAYKFAGQ 142 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHH----------------------HCTTSEEEEEEECTTCGGG-CCSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEECCCCchh-cccCHHHHHHHHHH
Confidence 999999999999999999998876 2357899999999998765 66888899999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
.+++++++||++|.||+++|++|.+.+.+...
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 143 MGIQLFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp HTCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998876544
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2e-27 Score=205.65 Aligned_cols=160 Identities=34% Similarity=0.629 Sum_probs=136.3
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
...++++++|. |||||+++|++..+... |++.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 34688999997 99999999999988542 888888888888999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
++|||++++.+++.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~ 145 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHE---------------------YAQHDVALMLLGNKVDSAHE-RVVKREDGEKLAKE 145 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECCSTTSC-CCSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECcccCcc-cccCHHHHHHHHHH
Confidence 999999999999999999988877 23367899999999999765 66788899999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++++++||+++.||+++|++|.+.+.+
T Consensus 146 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 146 YGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988864
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=5.8e-28 Score=207.00 Aligned_cols=158 Identities=36% Similarity=0.657 Sum_probs=135.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 4578999997 99999999999988765 88888888888899999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+++.+..|+..+.. ....++|+++|+||+|+.+. +.+..+++.++++..+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 142 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRK---------------------MLGNEICLCIVGNKIDLEKE-RHVSIQEAESYAESVG 142 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH---------------------HHGGGSEEEEEEECGGGGGG-CCSCHHHHHHHHHHTT
T ss_pred EEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCeEEEEEECcccccc-cccCHHHHHHHHHHcC
Confidence 9999999999999999988766 22357899999999999765 5688889999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++++||++|.|++++|++|++.+.
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 143 AKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999998775
No 22
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.6e-28 Score=216.26 Aligned_cols=164 Identities=25% Similarity=0.298 Sum_probs=138.3
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcC--cCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc-ccccchhhccCC
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVF--YPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER-YHTLAPMYYRNA 114 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~--~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-~~~l~~~~~~~a 114 (373)
.....++++++|. |||||+++|++... ... ++|.++..+.+.+++..+.+.+|||+|++. +..+.+.+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3345689999998 99999999996543 333 788888888999999999999999999887 566778889999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~ 194 (373)
|++++|||++++.||+.+..|+..+... ....++|++|||||+|+.+. +.+..++++.+
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~--------------------~~~~~~piilVgNK~DL~~~-r~v~~~e~~~~ 171 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRA--------------------RQTEDIPIILVGNKSDLVRC-REVSVSEGRAC 171 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTS--------------------GGGTTSCEEEEEECTTCGGG-CCSCHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHH--------------------hCCCCCcEEEEEEChHHhcC-ceEeHHHHHHH
Confidence 9999999999999999999998877651 12357899999999999764 66888888999
Q ss_pred HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+..++++|+++||++|.||+++|++|++.+..+
T Consensus 172 a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 172 AVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988543
No 23
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=1.8e-27 Score=203.45 Aligned_cols=158 Identities=48% Similarity=0.772 Sum_probs=142.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 478999997 99999999999988765 888888888899999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--cccCHHHHHHHHHHc
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--RCVEYSEGEAYAEEN 198 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--~~v~~~e~~~~~~~~ 198 (373)
||++++.+++.+..|+..+.. ....++|+++|+||+|+.+.. +.+..+++.++++..
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~ 141 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHE---------------------QASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK 141 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc
Confidence 999999999999999988876 334689999999999986431 457788899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++++++||++|.|++++|++|.+.+.
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 142 GLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999988765
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=2.8e-27 Score=202.49 Aligned_cols=158 Identities=44% Similarity=0.749 Sum_probs=143.7
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|++..+... |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 4588999997 99999999999987665 88888888889999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+++.+..|+..+.. ...+.+|+++|+||+|+.+. +.+..+++..+++..+
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~---------------------~~~~~~~iilv~nK~Dl~~~-~~v~~~~~~~~~~~~~ 142 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQ---------------------HGPPSIVVAIAGNKCDLTDV-REVMERDAKDYADSIH 142 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH---------------------HSCTTSEEEEEEECTTCGGG-CCSCHHHHHHHHHHTT
T ss_pred EEECcCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECCccccc-cccCHHHHHHHHHHcC
Confidence 9999999999999999988877 34578999999999999765 5678888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++++||+++.|++++|++|.+.+.
T Consensus 143 ~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 AIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999998775
No 25
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=6.2e-28 Score=216.49 Aligned_cols=164 Identities=23% Similarity=0.406 Sum_probs=139.6
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
+....++++++|. |||||+++|+++.|... |++.++ .+.+.+++..+.+.||||+|+++|..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 3445689999998 99999999999998776 888776 5677788889999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHH-HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------Cc
Q psy18160 117 AIIVYDITNQDTFGR-AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RR 184 (373)
Q Consensus 117 iilv~D~~~~~Sf~~-i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~ 184 (373)
+|+|||++++.+|+. +..|+..+... .+++|++|||||+|+.++ .+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 159 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDY----------------------CPSTRVLLIGCKTDLRTDLSTLMELSHQKQA 159 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHH----------------------CTTSEEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEEChhhccchhhhhhhcccccC
Confidence 999999999999999 68899988772 358899999999999652 25
Q ss_pred ccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHcchhhc
Q psy18160 185 CVEYSEGEAYAEENGL-LFMETSAKTAMN-VNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 185 ~v~~~e~~~~~~~~~~-~~~evSak~~~g-I~~lf~~L~~~i~~~~~ 229 (373)
.+..+++.++++.+++ +|+++||++|.| |+++|+.|++.+..+..
T Consensus 160 ~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 160 PISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred ccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 6889999999999999 999999999998 99999999998875433
No 26
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=2.5e-27 Score=206.01 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=144.0
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|++..+... |++..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 445689999998 99999999999987766 777666 67888999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
++|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..++++++++.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~nK~Dl~~~-~~v~~~~~~~~~~~ 152 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRV--------------------KDRESFPMILVANKVDLMHL-RKVTRDQGKEMATK 152 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH--------------------HTSSCCCEEEEEECTTCSTT-CCSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEECCCchhc-cCcCHHHHHHHHHH
Confidence 9999999999999999999888652 23467899999999999775 67899999999999
Q ss_pred cCCeEEEEcCC-CCCCHHHHHHHHHHHcch
Q psy18160 198 NGLLFMETSAK-TAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 198 ~~~~~~evSak-~~~gI~~lf~~L~~~i~~ 226 (373)
++++++++||+ ++.||+++|++|++.+.+
T Consensus 153 ~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 153 YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999 999999999999987753
No 27
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=2.8e-27 Score=204.76 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=135.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
...++++++|. |||||+++|+++.|... |++..+ .+.+.+++..+.+++|||+|+++ ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 34689999998 99999999999988766 777554 67888999999999999999986 568899999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC-CCcccCHHHHHHHHHHc
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT-SRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~~v~~~e~~~~~~~~ 198 (373)
|||++++.+|+.+..|+..+... .....+++|++|||||+|+.. ..+.+..+++.++++..
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~------------------~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~ 140 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSL------------------RGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM 140 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH------------------HCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHH------------------HhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh
Confidence 99999999999999987766552 112346899999999999942 22678889999999886
Q ss_pred -CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 199 -GLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 199 -~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+++++++||++|.||+++|++|++.+.+..
T Consensus 141 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 141 KRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp SSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999887543
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=1.6e-27 Score=204.02 Aligned_cols=158 Identities=39% Similarity=0.651 Sum_probs=139.6
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 478999997 99999999999988765 888888888888898899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+++.+..|+..+.. ....++|+++|+||+|+.. +.+..+++.++++.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~ 139 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNE---------------------HANDEAQLLLVGNKSDMET--RVVTADQGEALAKELGI 139 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCTT--CCSCHHHHHHHHHHHTC
T ss_pred EECCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECccCCc--CccCHHHHHHHHHHcCC
Confidence 999999999999999988877 3346789999999999943 56788889999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++||++|.|++++|++|.+.+.++
T Consensus 140 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 140 PFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999888653
No 29
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=211.80 Aligned_cols=163 Identities=35% Similarity=0.606 Sum_probs=139.6
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.||||+|++++..++..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45689999998 99999999999988765 8888888889999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ....++|++||+||+|+... +.+..+++.++++..
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~ 160 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDART---------------------LASPNIVVILCGNKKDLDPE-REVTFLEASRFAQEN 160 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH---------------------HTCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECCCcccc-cccCHHHHHHHHHHc
Confidence 99999999999999999988876 33468999999999999754 568888999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+++++++||++|.||+++|++|++.+.++..
T Consensus 161 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 161 ELMFLETSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998876544
No 30
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=1.2e-27 Score=206.82 Aligned_cols=163 Identities=25% Similarity=0.371 Sum_probs=141.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECC-EEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDD-VTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~-~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
..++++++|. |||||+++|+++.+... |+|.++..+.+.+++ ..+.+.+|||+|++++..++..+++++|+++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 4589999997 99999999999988755 888888888999877 6889999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.... ......+|++||+||+|+.+. +.+..+++.++++.+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~~~~iilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 145 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVS------------------EESETQPLVALVGNKIDLEHM-RTIKPEKHLRFCQEN 145 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH------------------HHHTCCCEEEEEEECGGGGGG-CSSCHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh------------------cccCCCCeEEEEEEccccccc-cccCHHHHHHHHHHc
Confidence 9999999999999999998886620 001133458999999999764 567888999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++++||++|.||+++|++|++.+.+.
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 146 GFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988643
No 31
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-27 Score=209.41 Aligned_cols=161 Identities=30% Similarity=0.519 Sum_probs=145.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|++..+... |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 4578999997 99999999999988765 88888888889999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 144 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKT---------------------YSWDNAQVLLVGNKCDMEDE-RVVSSERGRQLADHLG 144 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH---------------------HSCSSCEEEEEEECTTCTTS-CCSCHHHHHHHHHHHT
T ss_pred EEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccCcc-cccCHHHHHHHHHHCC
Confidence 9999999999999999988876 33467899999999999765 6688889999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
++++++||++|.||+++|++|++.+.++.
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 32
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-28 Score=215.36 Aligned_cols=163 Identities=29% Similarity=0.510 Sum_probs=147.3
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.||||+|++++..++..+++++|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 345689999998 99999999999988776 888888888998888889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
++|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~ 157 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKT---------------------YSWDNAQVILVGNKCDMEEE-RVVPTEKGQLLAEQ 157 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCccc-cccCHHHHHHHHHH
Confidence 999999999999999999998877 34568999999999999765 67888999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
++++++++||++|.||+++|++|++.+.++.
T Consensus 158 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 158 LGFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999887543
No 33
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=1.6e-27 Score=204.26 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=129.4
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc-cchhhccCCcEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT-LAPMYYRNAQAAII 119 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~-l~~~~~~~ad~iil 119 (373)
.++++++|. |||||+++|.+..+... +.+.++..+.+.+++..+.+.+|||+|++++.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 478999997 99999999998766654 666778888899999999999999999999876 78888999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++++|+.+..|+..+... ....++|+++|+||+|+.+. +.+..+++.++++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 140 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAG--------------------RPHHDLPVILVGNKSDLARS-REVSLEEGRHLAGTLS 140 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--------------------STTSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHTT
T ss_pred EEECCChHHHHHHHHHHHHHHhc--------------------ccCCCCCEEEEeeCcchhhc-ccCCHHHHHHHHHHcC
Confidence 99999999999999999888762 22357999999999999765 6788999999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++++||+++.|++++|++|++.+..
T Consensus 141 ~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 141 CKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988764
No 34
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=1.7e-27 Score=203.41 Aligned_cols=158 Identities=25% Similarity=0.311 Sum_probs=119.6
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++++|. |||||+++|.+..+... +.+.++ .+.+.+++..+.+.+|||+|++++..++..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 468999997 99999999998877655 666665 567788999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCe
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~ 201 (373)
|++++.+|+.+..|+..+... ....++|+++|+||+|+.+. +.+..+++.+++...+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 139 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRA--------------------RQTDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCK 139 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHC--------------------C---CCCEEEEEECTTCCSS-CCSCHHHHHHHHHHTTCE
T ss_pred ECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEeccccccc-cccCHHHHHHHHHHhCCc
Confidence 999999999999999888762 23467899999999999876 678899999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 202 FMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++||++|.||+++|++|++.+.+
T Consensus 140 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 140 FIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=3e-27 Score=204.37 Aligned_cols=164 Identities=24% Similarity=0.433 Sum_probs=144.3
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
+....++++++|. |||||+++|++..+... |++.++. +.+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3456789999997 99999999999987766 7777765 778889999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..+++.+++.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~ 142 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRV--------------------KDRDDFPVVLVGNKADLESQ-RQVPRSEASAFGA 142 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH--------------------HTSSCCCEEEEEECGGGGGG-CCSCHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-cccCHHHHHHHHH
Confidence 99999999999999999999888541 23467899999999999765 5688888999999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
..+++++++||++|.||+++|++|.+.+.+..
T Consensus 143 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 143 SHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999887544
No 36
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=8.2e-28 Score=213.05 Aligned_cols=167 Identities=24% Similarity=0.350 Sum_probs=138.6
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCC
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNA 114 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a 114 (373)
+++....++++++|. |||||+++|++..+... |.+..+ .+.+.+++..+.+.+|||+|++++..++..+++++
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 345566799999998 99999999999998876 777666 66777788889999999999999999999999999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~ 194 (373)
|++++|||++++.+|+.+..|+..+... ....++|++||+||+|+... +.+..+++.++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~ 155 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEG--------------------HGKTRVPVVLVGNKADLSPE-REVQAVEGKKL 155 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-------------------------CCCEEEEEECTTCGGG-CCSCHHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECccCccc-cccCHHHHHHH
Confidence 9999999999999999999999988762 23357899999999999765 67888999999
Q ss_pred HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
++.++++++++||++|.||+++|++|++.+.+...
T Consensus 156 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 156 AESWGATFMESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999998875443
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.6e-27 Score=209.58 Aligned_cols=160 Identities=44% Similarity=0.695 Sum_probs=144.0
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... |+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 34689999998 99999999999987654 8898888888888888999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..++++++++..
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piiiv~NK~Dl~~~-~~v~~~~~~~~~~~~ 158 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKE---------------------HGPENIVMAIAGNKCDLSDI-REVPLKDAKEYAESI 158 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH---------------------hCCCCCcEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence 99999999999999999998877 33467899999999999754 567888999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+++++++||+++.||+++|++|.+.+.+
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 159 GAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988764
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=2.2e-27 Score=204.93 Aligned_cols=159 Identities=35% Similarity=0.644 Sum_probs=143.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999998 99999999999988766 88888888899999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+|+.+..|+..+.. ....++|+++|+||+|+.+. +.+..+++.++++..+
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 150 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRT---------------------ERGSDVIIMLVGNKTDLSDK-RQVSTEEGERKAKELN 150 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH---------------------HHTTSSEEEEEEECGGGGGG-CCSCHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECCccccc-CcCCHHHHHHHHHHcC
Confidence 9999999999999999988876 23357899999999999765 5678888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++++||+++.|++++|++|.+.+.+
T Consensus 151 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 151 VMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999987753
No 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.7e-28 Score=211.46 Aligned_cols=162 Identities=33% Similarity=0.571 Sum_probs=139.9
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
+....++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 3455688999997 99999999999988765 88888888899999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+|+|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..++++++++
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilV~NK~Dl~~~-~~v~~~~~~~~~~ 159 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDK---------------------YASEDAELLLVGNKLDCETD-REITRQQGEKFAQ 159 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccc-cccCHHHHHHHHH
Confidence 9999999999999999999888876 34467999999999999765 5678888999998
Q ss_pred Hc-CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 197 EN-GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 197 ~~-~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.. +++++++||++|.||+++|++|++.+.+
T Consensus 160 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 160 QITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 75 7899999999999999999999988764
No 40
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=2e-27 Score=207.77 Aligned_cols=168 Identities=26% Similarity=0.414 Sum_probs=145.6
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEE-EEEEEECCE---------EEEEEEEeCCCccccc
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFI-TQTVCLDDV---------TIRFEIWDTAGQERYH 104 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~-~~~i~~~~~---------~v~l~i~Dt~G~e~~~ 104 (373)
..+....++++++|. |||||+++|+++.+... |++.++. .+.+.+++. .+.+.+|||+|++++.
T Consensus 5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence 344556789999997 99999999999988765 8888887 667777765 7899999999999999
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR 184 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~ 184 (373)
.++..+++++|++++|||++++.+++.+..|+..+... ....++|++||+||+|+.+. +
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~ 143 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH--------------------AYSENPDIVLCGNKSDLEDQ-R 143 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH--------------------SSSSSCCEEEEEECTTCGGG-C
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-c
Confidence 99999999999999999999999999999999988762 12267899999999999764 5
Q ss_pred ccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 185 CVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 185 ~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
.+..+++.++++.++++++++||+++.||+++|++|.+.+.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 144 AVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 678889999999999999999999999999999999998876544
No 41
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=209.68 Aligned_cols=162 Identities=23% Similarity=0.300 Sum_probs=136.2
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
.....++++++|. |||||+++|+++.|... |++.++ ...+.+++..+.+++|||+|+++|..+ ..+++++|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 3446689999998 99999999999988765 888776 466788999999999999999999886 679999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+|+.+..|+..+.... .....++|++||+||+|+.+. +.+..+++.++++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~ 155 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHA------------------KETQRSIPALLLGNKLDMAQY-RQVTKAEGVALAG 155 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH------------------HHHCCCCCEEEEEECGGGGGG-CSSCHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh------------------hccCCCCCEEEEEECcchhhc-CccCHHHHHHHHH
Confidence 999999999999999999998887620 001257899999999999765 6788899999999
Q ss_pred HcCCeEEEEcC-CCCCCHHHHHHHHHHHcc
Q psy18160 197 ENGLLFMETSA-KTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 197 ~~~~~~~evSa-k~~~gI~~lf~~L~~~i~ 225 (373)
.++++++++|| +++.||+++|+.|++.+.
T Consensus 156 ~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 156 RFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 99999999999 899999999999998775
No 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=211.86 Aligned_cols=163 Identities=29% Similarity=0.507 Sum_probs=135.8
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
.....++++++|. |||||+++|++..+... |+|.++..+.+.+++..+.+.||||+|++++..++..+++++|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 3445689999998 99999999999988655 88888888889999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC-----CCcccCHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT-----SRRCVEYSEG 191 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-----~~~~v~~~e~ 191 (373)
+|+|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+ ..+.+..+++
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~ 162 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIED---------------------AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH---------------------HC---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECcccccccccccccccCHHHH
Confidence 9999999999999999999988876 2345789999999999952 2266888899
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.++++..+++++++||++|.||+++|++|++.+.+
T Consensus 163 ~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988753
No 43
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=1.9e-27 Score=210.80 Aligned_cols=166 Identities=35% Similarity=0.570 Sum_probs=142.8
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|++..+... |++.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 345689999997 99999999999988765 888888888888999899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE- 196 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~- 196 (373)
|+|||++++.+|+.+..|+..+...... ....++|++||+||+|+.+ +.+..+++.++++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~ 145 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASP-----------------RDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYS 145 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCC-----------------SSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccc-----------------ccCCCCcEEEEEECCCCcc--cccCHHHHHHHHHh
Confidence 9999999999999999999887662100 1124789999999999973 5677888888887
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
..+++++++||++|.||+++|++|++.+.+..
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 146 KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 66789999999999999999999999887654
No 44
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.8e-27 Score=208.03 Aligned_cols=165 Identities=24% Similarity=0.391 Sum_probs=143.4
Q ss_pred cccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhc
Q psy18160 38 MMSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYY 111 (373)
Q Consensus 38 ~~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~ 111 (373)
.|+..+....++++++|. |||||+++|+++.+... |++..+ .+.+.+++..+.+.+|||+|+++|..++..++
T Consensus 9 ~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 87 (194)
T 2atx_A 9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87 (194)
T ss_dssp CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred ccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence 345555567789999998 99999999999988765 777665 56777888889999999999999999999999
Q ss_pred cCCcEEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC--------
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-------- 182 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-------- 182 (373)
+++|++++|||++++.+|+.+. .|+..+... .+++|++||+||+|+.+.
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~ 145 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY----------------------APNVPFLLIGTQIDLRDDPKTLARLN 145 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----------------------STTCCEEEEEECTTSTTCHHHHHHHT
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEEChhhcccccchhhcc
Confidence 9999999999999999999997 798888761 247899999999999763
Q ss_pred ---CcccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 183 ---RRCVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 183 ---~~~v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.+.+..+++.++++.+++ +++++||++|.||+++|++|++.+.
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 146 DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 146788999999999998 8999999999999999999998765
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=4.3e-27 Score=205.96 Aligned_cols=161 Identities=14% Similarity=0.239 Sum_probs=137.3
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
.+....++++++|. |||||+++|+++.|... +.+.++ .+.+.+++..+.+++|||+|+++|. +++++|+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 44556799999998 99999999999998876 224344 5888999999999999999999876 7889999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC-CCcccCHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT-SRRCVEYSEGEAYA 195 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~~v~~~e~~~~~ 195 (373)
+++|||++++.+|+.+..|+..+... ....++|++|||||+|+.. ..+.++.+++.+++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~ 148 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSF--------------------RNASEVPMVLVGTQDAISAANPRVIDDSRARKLS 148 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTT--------------------SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccccccccCHHHHHHHH
Confidence 99999999999999999999988762 1225789999999999942 23678899999999
Q ss_pred HHcC-CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 196 EENG-LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 196 ~~~~-~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+.++ ++|+++||++|.||+++|++|++.+.+++
T Consensus 149 ~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 149 TDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp HHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 9997 89999999999999999999999887543
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=5.1e-27 Score=206.46 Aligned_cols=161 Identities=20% Similarity=0.386 Sum_probs=141.4
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|+++.+... |++.++. ..+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 445689999997 99999999999988655 7777764 5678899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-CcccCHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRCVEYSEGEAYA 195 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~v~~~e~~~~~ 195 (373)
++|||++++.+|+.+ ..|+..+.. ..+++|++||+||+|+.+. .+.+..+++.+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~----------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKH----------------------YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC 156 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHH----------------------HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHH----------------------hCCCCCEEEEEEChhhccCCCCcccHHHHHHHH
Confidence 999999999999997 678887766 2357899999999999753 3568889999999
Q ss_pred HHcCCe-EEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 196 EENGLL-FMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 196 ~~~~~~-~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+.++++ ++++||++|.||+++|++|++.+.++
T Consensus 157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 157 QKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 999998 99999999999999999999988754
No 47
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.4e-27 Score=208.79 Aligned_cols=164 Identities=23% Similarity=0.328 Sum_probs=140.6
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|+++.+... |++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 345689999997 99999999999988755 666554 45677888999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~ 197 (373)
++|||++++.+|+.+..|+..+.... ....++|++||+||+|+.+ +.+..+++.++++.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~ 142 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIK-------------------GSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQE 142 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHH-------------------SCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh-------------------cCCCCCCEEEEEECccCCc--cccCHHHHHHHHHH
Confidence 99999999999999998887776520 1124789999999999975 55778889999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
++++++++||++|.||+++|++|++.+.++..
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 143 WKCAFMETSAKMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHHCSSSCE
T ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999998876544
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=2.4e-27 Score=202.48 Aligned_cols=158 Identities=29% Similarity=0.504 Sum_probs=142.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4588999997 99999999999988765 88888988999999999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+++.+..|+..+... . .+.|+++|+||+|+.+. +.+..+++.++++.++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~---------------------~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 140 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAE---------------------V-GDIPTALVQNKIDLLDD-SCIKNEEAEGLAKRLK 140 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH---------------------H-CSCCEEEEEECGGGGGG-CSSCHHHHHHHHHHHT
T ss_pred EEECcCHHHHHHHHHHHHHHHHh---------------------C-CCCCEEEEEECcccCcc-cccCHHHHHHHHHHcC
Confidence 99999999999999999888762 1 57899999999999764 5678888999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++++||+++.|++++|++|.+.+.+
T Consensus 141 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 141 LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999987753
No 49
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=1.5e-27 Score=212.79 Aligned_cols=161 Identities=27% Similarity=0.505 Sum_probs=137.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|+++.|... |++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 45689999998 99999999999988765 777665 466778888999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-------ccCHHH
Q psy18160 119 IVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-------CVEYSE 190 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-------~v~~~e 190 (373)
+|||++++.+|+.+. .|+..+... .+++|++||+||+|+.+... .+..++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~ 143 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRF----------------------APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQ 143 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH----------------------CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEeCHHhhhCccccccccCCCCHHH
Confidence 999999999999997 798888762 24789999999999966411 247888
Q ss_pred HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 191 GEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 191 ~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+.++++.++. +|+++||++|.||+++|++|++.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 144 GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 9999999996 9999999999999999999999887543
No 50
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=3.3e-27 Score=206.79 Aligned_cols=161 Identities=32% Similarity=0.533 Sum_probs=140.7
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccc-ccchhhccCCcE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQA 116 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~-~l~~~~~~~ad~ 116 (373)
....++++++|. |||||+++|+++.+... |++.++..+.+.+++..+.+.+|||+|++++. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 345689999997 99999999999988765 88888988999999999999999999999998 889999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..+++.++++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~ 155 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQH--------------------LLANDIPRILVGNKCDLRSA-IQVPTDLAQKFAD 155 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH--------------------CCCSCCCEEEEEECTTCGGG-CCSCHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-ceeCHHHHHHHHH
Confidence 99999999999999999999988772 22467899999999999765 5678889999999
Q ss_pred HcCCeEEEEcCCCC---CCHHHHHHHHHHHcc
Q psy18160 197 ENGLLFMETSAKTA---MNVNEIFVEIAKKLP 225 (373)
Q Consensus 197 ~~~~~~~evSak~~---~gI~~lf~~L~~~i~ 225 (373)
.++++++++||+++ .||+++|++|++.+.
T Consensus 156 ~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 99999999999999 999999999987764
No 51
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-26 Score=203.32 Aligned_cols=161 Identities=35% Similarity=0.585 Sum_probs=144.3
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.||||+|++++..++..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 34589999997 99999999999988765 8888888889999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+++.+..|+..+... ....++|++||+||+|+.+ +.+..+++.++++.+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~ 150 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETY--------------------CTRNDIVNMLVGNKIDKEN--REVDRNEGLKFARKH 150 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTC--------------------CSCSCCEEEEEEECTTSSS--CCSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--------------------cCcCCCcEEEEEECCcCcc--cccCHHHHHHHHHHc
Confidence 999999999999999999888662 1235789999999999954 567888899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++++||+++.||+++|++|++.+.+.
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 151 SMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988754
No 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=7.5e-27 Score=201.53 Aligned_cols=164 Identities=26% Similarity=0.480 Sum_probs=142.7
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 345688999998 99999999999988765 888888888999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH-
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE- 196 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~- 196 (373)
++|||++++.+++.+..|+..+..... .....++|+++|+||+|+.+ +.+..+++.++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~ 144 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYAD-----------------VKEPESFPFVILGNKIDISE--RQVSTEEAQAWCRD 144 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHT-----------------CSCTTTSCEEEEEECTTCSS--CSSCHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHcc-----------------ccccCCCcEEEEEECCcccc--cccCHHHHHHHHHh
Confidence 999999999999999999988876211 01236789999999999973 5688889999988
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..+++++++||++|.||+++|++|++.+.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 145 NGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999998864
No 53
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=7.2e-27 Score=203.59 Aligned_cols=161 Identities=26% Similarity=0.438 Sum_probs=139.0
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|++..+... |.+ +.....+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4578999998 99999999999987765 554 4445778889999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+|+.+..|+..+... ....++|+++|+||+|+.+ +.+..+++.++++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~ 139 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRV--------------------KDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYG 139 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH--------------------TTCSCCCEEEEEECTTSSS--CSSCHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEECccCcc--cccCHHHHHHHHHHcC
Confidence 99999999999999999888763 2346789999999999975 5678889999999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
++++++||++|.||+++|++|++.+.+...
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999998876543
No 54
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=5.5e-27 Score=204.67 Aligned_cols=160 Identities=26% Similarity=0.443 Sum_probs=137.9
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
+...++++++|. |||||+++|++..+... |++.++ .+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 345689999998 99999999999988765 777666 46678888899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------Ccc
Q psy18160 118 IIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRC 185 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~ 185 (373)
++|||++++.+|+.+ ..|+..+... .+++|++||+||+|+.+. .+.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEF----------------------CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTP 140 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH----------------------CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH----------------------CCCCCEEEEEEcchhhcchhhHhhhhhcccCC
Confidence 999999999999998 6888887661 257899999999999642 256
Q ss_pred cCHHHHHHHHHHcC-CeEEEEcCC-CCCCHHHHHHHHHHHcch
Q psy18160 186 VEYSEGEAYAEENG-LLFMETSAK-TAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 186 v~~~e~~~~~~~~~-~~~~evSak-~~~gI~~lf~~L~~~i~~ 226 (373)
++.+++.++++.++ .+|+++||+ ++.||+++|+.|++.+.+
T Consensus 141 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 141 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 88899999999988 799999999 689999999999987753
No 55
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=3.7e-27 Score=203.96 Aligned_cols=167 Identities=31% Similarity=0.513 Sum_probs=131.6
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
....++++++|. |||||+++|++..+... |++.++....+.++ +..+.+.+|||+|++++..++..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 345689999997 99999999999988765 78888888888887 667889999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+|+.+..|+..+..... .....++|++||+||+|+....+.+..+++.++++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~ 147 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHAN-----------------VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK 147 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-----------------CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhc-----------------ccCcCCCcEEEEEECCccccccccCCHHHHHHHHH
Confidence 9999999999999999999988876211 01236789999999999965546678888999988
Q ss_pred -HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 197 -ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 197 -~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
..+.+++++||++|.||+++|++|++.+.++
T Consensus 148 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 148 SLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp HTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999988654
No 56
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=9.3e-27 Score=198.64 Aligned_cols=157 Identities=28% Similarity=0.457 Sum_probs=138.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|.++.+... |++..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 478999997 99999999999988765 777665 46677888899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc-C
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN-G 199 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~-~ 199 (373)
||++++.+|+.+..|+..+... ....++|+++|+||+|+.+. +.+..+++.++++.+ +
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 140 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRV--------------------KDTEDVPMILVGNKCDLEDE-RVVGKEQGQNLARQWCN 140 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH--------------------HCCSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHTTS
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------hCcCCCcEEEEEECcccccc-ccCCHHHHHHHHHHccC
Confidence 9999999999999998888762 23467899999999999765 667888999999987 7
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++++++||++|.|++++|++|++.+.
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 141 CAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=2.9e-26 Score=201.73 Aligned_cols=159 Identities=39% Similarity=0.665 Sum_probs=139.8
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEE----------------------------
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVT---------------------------- 89 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~---------------------------- 89 (373)
....++++++|. |||||+++|++..+... |++.++..+.+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 345689999997 99999999999988765 88888888888887765
Q ss_pred ---------EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160 90 ---------IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKEL 160 (373)
Q Consensus 90 ---------v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 160 (373)
+.+.||||+|++++..++..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~------------------ 145 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS------------------ 145 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH------------------
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh------------------
Confidence 89999999999999999999999999999999999999999999999888762
Q ss_pred hhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 161 QRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 161 ~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.+.|+++|+||+| ... +.+..+++.++++..+++++++||+++.||+++|++|++.+.++
T Consensus 146 -----~~~piilv~NK~D-~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 146 -----SNYIIILVANKID-KNK-FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp -----SCCEEEEEEECTT-CC--CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEECCC-ccc-ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2389999999999 333 66888999999999999999999999999999999999887643
No 58
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.7e-26 Score=205.66 Aligned_cols=164 Identities=37% Similarity=0.610 Sum_probs=144.1
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
+....++++++|. |||||+++|++..+... |++.++....+.+++..+.+.+|||+|++++..++..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3345689999997 99999999999988655 88888888899999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+|+.+..|+..+.. ....++|++||+||+|+.. +.+..+++.++++
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~ 152 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNE---------------------HANDEAQLLLVGNKSDMET--RVVTADQGEALAK 152 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH---------------------HTTTCSEEEEEEECTTCSS--CCSCHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCcc--cccCHHHHHHHHH
Confidence 9999999999999999999988876 2345789999999999943 5678888999999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
.++++++++||+++.||+++|++|.+.+.++..
T Consensus 153 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 153 ELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp HHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998876543
No 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1e-26 Score=205.03 Aligned_cols=164 Identities=29% Similarity=0.390 Sum_probs=140.6
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCC
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNA 114 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~a 114 (373)
.+.....++++++|. |||||+++|+++.+... |++.++ .+.+.+++..+.+.+|||+|+++ ..++..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 22 SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp -----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 334456789999998 99999999999988765 777655 56678899999999999999998 77889999999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~ 194 (373)
|++++|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..+++.++
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~NK~Dl~~~-~~v~~~~~~~~ 158 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEI--------------------KKPKNVTLILVGNKADLDHS-RQVSTEEGEKL 158 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH--------------------HTTSCCCEEEEEECGGGGGG-CCSCHHHHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHh--------------------hCCCCCcEEEEEECcccccc-cccCHHHHHHH
Confidence 9999999999999999999999888762 22357899999999999765 66888999999
Q ss_pred HHHcCCeEEEEcCCCCC-CHHHHHHHHHHHcchh
Q psy18160 195 AEENGLLFMETSAKTAM-NVNEIFVEIAKKLPKK 227 (373)
Q Consensus 195 ~~~~~~~~~evSak~~~-gI~~lf~~L~~~i~~~ 227 (373)
++.++++++++||++|. ||+++|++|++.+.++
T Consensus 159 ~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 159 ATELACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp HHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999 9999999999988754
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=204.46 Aligned_cols=163 Identities=21% Similarity=0.337 Sum_probs=134.7
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ 115 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad 115 (373)
......++++++|. |||||+++|+++.|... |++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 34456789999998 99999999999887655 666555 567788999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------C
Q psy18160 116 AAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------R 183 (373)
Q Consensus 116 ~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~ 183 (373)
++++|||++++.+|+.+. .|+..+... .+++|++||+||+|+... .
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 151 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCH----------------------CPKAPIILVGTQSDLREDVKVLIELDKCKE 151 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH----------------------CSSSCEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEECHhhhhchhhhhhhccccc
Confidence 999999999999999997 798887762 247899999999999652 2
Q ss_pred cccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 184 RCVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 184 ~~v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+.+..+++..+++.+++ +|+++||++|.||+++|++|++.+.+.
T Consensus 152 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 152 KPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 56788899999999997 999999999999999999999988654
No 61
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=1.6e-26 Score=203.70 Aligned_cols=160 Identities=26% Similarity=0.323 Sum_probs=134.5
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCc--CcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc-ccccchhhccCCcEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVV--FYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER-YHTLAPMYYRNAQAAI 118 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~--~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-~~~l~~~~~~~ad~ii 118 (373)
.++++++|. |||||+++|++.. |... ++|.++..+.+.+++..+.+.+|||+|++. +..+.+.+++.+|+++
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i 85 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 85 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEE
Confidence 578999998 9999999999643 3333 778888888899999999999999999876 5667888999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.||+.+..|+..+... ....++|+++|+||+|+... +.+..+++..++..+
T Consensus 86 ~v~dv~~~~s~~~~~~~~~~l~~~--------------------~~~~~~piilV~NK~Dl~~~-r~v~~~~~~~~a~~~ 144 (192)
T 2cjw_A 86 IVYSITDRASFEKASELRIQLRRA--------------------RQTEDIPIILVGNKSDLVRX-REVSVSEGRAXAVVF 144 (192)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH--------------------TTTSCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--------------------hCCCCCeEEEEEechhhhcc-ccccHHHHHHHHHHh
Confidence 999999999999999998877652 12357899999999999754 668888888899999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++|+++||++|.||+++|++|++.+...
T Consensus 145 ~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 145 DXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988543
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=1.6e-26 Score=196.95 Aligned_cols=157 Identities=26% Similarity=0.439 Sum_probs=136.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|++..+... |.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 478999997 99999999999987665 666555 45678899999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+|+.+..|+..+... ....++|+++|+||+|+.+. +.+..+++.++++.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 141 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRV--------------------KEDENVPFLLVGNKSDLEDK-RQVSVEEAKNRADQWNV 141 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH--------------------HCCTTSCEEEEEECGGGGGG-CCSCHHHHHHHHHHHTC
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEECcccccc-CccCHHHHHHHHHHcCC
Confidence 9999999999999999888762 22357899999999999765 56888899999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++++||+++.|++++|++|++.+.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 142 NYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998775
No 63
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=5.2e-27 Score=210.09 Aligned_cols=164 Identities=28% Similarity=0.459 Sum_probs=143.0
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCE----------EEEEEEEeCCCcccccccch
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDV----------TIRFEIWDTAGQERYHTLAP 108 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~----------~v~l~i~Dt~G~e~~~~l~~ 108 (373)
...++++++|. |||||+++|++..+... |++.++..+.+.+++. .+.+.||||+|+++|..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 44688999997 99999999999988765 8888888888888776 78999999999999999999
Q ss_pred hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 109 MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
.+++.+|++|+|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~--------------------~~~~~~piilV~NK~Dl~~~-~~v~~ 161 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN--------------------AYCENPDIVLIGNKADLPDQ-REVNE 161 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC--------------------CTTTCCEEEEEEECTTCGGG-CCSCH
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--------------------cCcCCCCEEEEEECCccccc-cccCH
Confidence 9999999999999999999999999998766541 11267999999999999765 56788
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+++.++++.++++++++||+++.||+++|++|++.+.++..
T Consensus 162 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 162 RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp HHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999998876543
No 64
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=1.2e-26 Score=206.91 Aligned_cols=160 Identities=26% Similarity=0.443 Sum_probs=138.2
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|++..+... |++.++ .+.+.+++..+.+.||||+|+++|..++..+++++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 345689999998 99999999999988765 777766 46677888899999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------Ccc
Q psy18160 118 IIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRC 185 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~ 185 (373)
|+|||++++.+|+.+ ..|+..+... .+++|++|||||+|+.+. .+.
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 161 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEF----------------------CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTP 161 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH----------------------CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH----------------------CCCCCEEEEEechhhccchhhhhhhcccccCC
Confidence 999999999999999 6898887661 257899999999999642 256
Q ss_pred cCHHHHHHHHHHcC-CeEEEEcCC-CCCCHHHHHHHHHHHcch
Q psy18160 186 VEYSEGEAYAEENG-LLFMETSAK-TAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 186 v~~~e~~~~~~~~~-~~~~evSak-~~~gI~~lf~~L~~~i~~ 226 (373)
++.+++.++++.++ .+|+++||+ ++.||+++|+.|++.+.+
T Consensus 162 v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 162 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 88889999999988 699999999 689999999999987753
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=2.9e-26 Score=199.23 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=141.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... |.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 35689999997 99999999999988665 666555 466788999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. +.+..+++.++++.+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 153 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRV--------------------KEDENVPFLLVGNKSDLEDK-RQVSVEEAKNRAEQW 153 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH--------------------HCCTTCCEEEEEECGGGGGG-CCSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECcccccc-CccCHHHHHHHHHHc
Confidence 999999999999999999888762 22357899999999999765 568888999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+++++++||+++.||+++|++|.+.+.+++
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 154 NVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999886543
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=2.2e-26 Score=195.90 Aligned_cols=157 Identities=32% Similarity=0.468 Sum_probs=138.4
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|+++.+... |++..+ .+.+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 478999998 99999999999988765 655443 67788899999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+++.+..|+..+... ....+.|+++|+||+|+.+. +.+..+++.++++.+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 140 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRV--------------------KRYEKVPVILVGNKVDLESE-REVSSSEGRALAEEWGC 140 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH--------------------TTTSCCCEEEEEECGGGGGG-CCSCHHHHHHHHHHHTS
T ss_pred EeCCCHHHHHHHHHHHHHHHHh--------------------cCCCCCCEEEEEECCccccc-ccCCHHHHHHHHHHhCC
Confidence 9999999999999998888762 22357899999999998654 56788889999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++++||++|.|++++|++|++.+.
T Consensus 141 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 141 PFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 67
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=3.7e-27 Score=206.74 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=134.6
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--------------ceeeeEEEEEE-EECCEEEEEEEEeCCCccc
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--------------LFSAAFITQTV-CLDDVTIRFEIWDTAGQER 102 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------------Tig~~~~~~~i-~~~~~~v~l~i~Dt~G~e~ 102 (373)
.......++++++|. |||||++.+.+. +... |++.++..+.+ .+++..+.+++|||+|+++
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 344556789999997 999999665543 3322 66666665555 6678889999999999999
Q ss_pred ccccchhhccCCcEEEEEEECC------CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160 103 YHTLAPMYYRNAQAAIIVYDIT------NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK 176 (373)
Q Consensus 103 ~~~l~~~~~~~ad~iilv~D~~------~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK 176 (373)
|..++..+++++|++|+|||++ +.++|+.+.+|+..+.. ...++|++||+||
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~----------------------~~~~~piilv~NK 144 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL----------------------TLDDVPIVIQVNK 144 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC----------------------CTTSSCEEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc----------------------ccCCCCEEEEEEc
Confidence 9999999999999999999999 55677777777766532 4478999999999
Q ss_pred CCCCCCCcccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 177 ADLPTSRRCVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 177 ~Dl~~~~~~v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
+|+.+. +..+++.++++.+++ +++++||++|.||+++|++|++.+.++..
T Consensus 145 ~Dl~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 145 RDLPDA---LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp TTSTTC---CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred hhcccc---cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 999764 788899999999999 99999999999999999999998876543
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=5.5e-27 Score=207.69 Aligned_cols=161 Identities=21% Similarity=0.378 Sum_probs=111.3
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC--cCcCc---ceeeeEEEEEEEECCE--EEEEEEEeCCCcccccccchhhccCC
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV--VFYPY---LFSAAFITQTVCLDDV--TIRFEIWDTAGQERYHTLAPMYYRNA 114 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~--~~~~~---Tig~~~~~~~i~~~~~--~v~l~i~Dt~G~e~~~~l~~~~~~~a 114 (373)
...++++++|. |||||+++|++. .+... |++.++..+.+.+++. .+.+.+|||+|++++..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 34589999997 999999999998 77654 8888888888888887 89999999999999999999999999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC---CCCeEEEEEeCCCCCC-CCcccCHHH
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP---PNIVIALAGNKADLPT-SRRCVEYSE 190 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilVgnK~Dl~~-~~~~v~~~e 190 (373)
|++++|||++++.+|+.+..|+..+... .. .++|++||+||+|+.+ . +.+..++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~---------------------~~~~~~~~piilv~nK~Dl~~~~-~~v~~~~ 155 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSA---------------------RPDRERPLRAVLVANKTDLPPQR-HQVRLDM 155 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHH---------------------CSCTTSCCEEEEEEECC--------CCCHHH
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHh---------------------hcccccCCcEEEEEECcccchhh-ccCCHHH
Confidence 9999999999999999999999988772 22 5889999999999976 4 6788899
Q ss_pred HHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHcchh
Q psy18160 191 GEAYAEENGLLFMETSAKT-AMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~-~~gI~~lf~~L~~~i~~~ 227 (373)
+.++++.++++++++||++ +.||+++|++|++.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 156 AQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp HHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999987654
No 69
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.94 E-value=8.1e-28 Score=212.76 Aligned_cols=160 Identities=36% Similarity=0.663 Sum_probs=134.7
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... |++.++..+.+.+++..+.+.||||+|++++..++..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45688999997 99999999999988776 8888888899999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+|+.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++.+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~---------------------~~~~~~p~ilv~nK~Dl~~~-~~v~~~~~~~~~~~~ 168 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDR---------------------YASENVNKLLVGNKCDLTTK-KVVDYTTAKEFADSL 168 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHS---------------------CC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHH---------------------hccCCCCEEEEEECccCCcc-ccCCHHHHHHHHHHc
Confidence 99999999999999999998876 34468999999999999765 567777788899999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+++++++||+++.||+++|++|++.+.+
T Consensus 169 ~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 169 GIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp TCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999887754
No 70
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=4.9e-26 Score=197.78 Aligned_cols=158 Identities=25% Similarity=0.456 Sum_probs=137.9
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|+++.+... |++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 3578999997 99999999999888765 666554 5677889999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160 120 VYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE 187 (373)
Q Consensus 120 v~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~ 187 (373)
|||++++.+|+.+. .|+..+... .+++|+++|+||+|+.+. .+.+.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 140 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHH----------------------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 140 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH----------------------STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred EEECCChhhHHHHHHHHHHHHHHh----------------------CCCCCEEEEeEcccccccchhhhhhcccccccCC
Confidence 99999999999997 688887761 237899999999999653 14578
Q ss_pred HHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 188 YSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 188 ~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+++.++++.++. +++++||++|.||+++|++|++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 141 YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 8889999999997 99999999999999999999998863
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=3.4e-26 Score=204.94 Aligned_cols=161 Identities=23% Similarity=0.444 Sum_probs=120.6
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|+++.+... |++..+ .+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 345689999998 99999999999887655 665554 56778899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cc
Q psy18160 118 IIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RC 185 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~ 185 (373)
++|||++++.+|+.+. .|+..+... .+++|++||+||+|+.... +.
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 167 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHF----------------------CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEP 167 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH----------------------CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEEChhhhccchhhhhhcccccCc
Confidence 9999999999999997 788887661 2578999999999997642 35
Q ss_pred cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 186 VEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 186 v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+..+++.++++.+++ +++++||++|.||+++|++|++.+.+.
T Consensus 168 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 168 VTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 778889999999997 999999999999999999999988643
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.94 E-value=2.9e-25 Score=194.22 Aligned_cols=160 Identities=26% Similarity=0.448 Sum_probs=129.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|+++.+... |.+..+ .+.+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 35689999997 99999999999987765 665544 467788999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||++++.+++.+..|+..+... ....++|+++|+||+|+.. +.+..+++.++++.+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~ 155 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRV--------------------KDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSY 155 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH--------------------HTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHH--------------------hCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHc
Confidence 999999999999999999888762 1235789999999999976 457788999999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+++++++||+++.|++++|++|++.+.+.
T Consensus 156 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 156 GIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988654
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6.9e-26 Score=193.97 Aligned_cols=160 Identities=26% Similarity=0.319 Sum_probs=136.5
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
+.++++++|. |||||+++|+++.+... |++..+ ...+..++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3578999998 99999999999887654 666555 4566778888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~ 199 (373)
|||++++.+++.+..|+..+.... ...+++|+++|+||+|+.+. +.+..+++..+++..+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~-------------------~~~~~~pii~v~nK~Dl~~~-~~v~~~~~~~~~~~~~ 140 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIK-------------------GDVESIPIMLVGNKCDESPS-REVQSSEAEALARTWK 140 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHH-------------------C---CCCEEEEEECGGGGGG-CCSCHHHHHHHHHHHT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh-------------------CCCCCCCEEEEEEccccccc-cccCHHHHHHHHHHhC
Confidence 999999999999999888776621 12257899999999999765 5677888899999999
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 200 ~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++++++||++|.|++++|++|.+.+.+
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999999999987753
No 74
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=1.8e-25 Score=198.02 Aligned_cols=157 Identities=26% Similarity=0.444 Sum_probs=136.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|.++.+... |++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 4589999998 99999999999988765 7776664 457889999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccC
Q psy18160 120 VYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVE 187 (373)
Q Consensus 120 v~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~ 187 (373)
|||++++.+|+.+ ..|+..+... .+++|++||+||+|+.+.. +.+.
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 160 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHF----------------------CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVR 160 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH----------------------STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEecHHhhcCccchhhhcccccCcCC
Confidence 9999999999999 5788777661 2478999999999997641 3477
Q ss_pred HHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 188 YSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 188 ~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.+++.++++..+. +++++||++|.||+++|++|++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 161 SEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8889999999998 8999999999999999999988764
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=1.4e-26 Score=200.73 Aligned_cols=157 Identities=25% Similarity=0.485 Sum_probs=123.3
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|.++.+... |++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4579999997 99999999999987665 666444 2345567788889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc---------ccCHH
Q psy18160 120 VYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR---------CVEYS 189 (373)
Q Consensus 120 v~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~---------~v~~~ 189 (373)
|||++++.+|+.+. .|+..+.. . .+++|+++|+||+|+.+... .+..+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~---------------------~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~ 143 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKH---------------------Y-APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTV 143 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH---------------------H-CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEechhhhcCcccccccccCCCCCHH
Confidence 99999999999997 68888776 2 24789999999999966421 14778
Q ss_pred HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++.++++.++. +++++||++|.||+++|++|++.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 144 QGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999996 9999999999999999999998765
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=5e-25 Score=187.03 Aligned_cols=156 Identities=26% Similarity=0.445 Sum_probs=136.8
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||++++.+..+... |.+..+ .+.+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 368999997 99999999999987765 655444 56778899999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||++++.+++.+..|+..+... ....++|+++|+||+|+.+ +.+..+++.++++.+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~--------------------~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~ 139 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRV--------------------KDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGI 139 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH--------------------HTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTC
T ss_pred EECCCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCC
Confidence 9999999999999999888762 2234789999999999976 45778889999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++++||+++.|++++|++|++.+.
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 140 PYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998775
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=2.7e-26 Score=206.25 Aligned_cols=164 Identities=26% Similarity=0.422 Sum_probs=143.2
Q ss_pred ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc
Q psy18160 39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR 112 (373)
Q Consensus 39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~ 112 (373)
+........++++++|. |||||+++|+.+.+... |+|.++....+.+++..+.+.+|||+|++++..++..+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence 34445566799999998 99999999888877655 8888888888999999999999999999999999999999
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE 192 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~ 192 (373)
++|++++|||++++.+|+.+..|+..+... .+++|++||+||+|+.+. .+. .+..
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----------------------~~~~p~ilv~nK~Dl~~~--~~~-~~~~ 141 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRV----------------------CENIPIVLCGNKVDIKDR--KVK-AKSI 141 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHH----------------------STTCCEEEEEECTTSSSC--SSC-GGGC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEECCccccc--ccc-HHHH
Confidence 999999999999999999999999998772 247899999999999764 222 2566
Q ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.+++..+++++++||++|.||+++|++|++.+...
T Consensus 142 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 142 VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp CHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 78888999999999999999999999999988754
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=7.2e-26 Score=202.75 Aligned_cols=164 Identities=26% Similarity=0.330 Sum_probs=138.3
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEEC-CEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~-~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
....++++++|. |||||+++|+++.+... |++.++....+..+ +..+.+.+|||+|++++..++..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 345689999998 99999999999888765 77777665555554 445889999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~ 196 (373)
+++|||++++.+++.+..|+..+.. ....++|++||+||+|+.+. +.+..+++.++++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~ 145 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQA---------------------VVGNEAPIVVCANKIDIKNR-QKISKKLVMEVLK 145 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH---------------------HHCSSSCEEEEEECTTCC-----CCHHHHHHHTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH---------------------hcCCCCCEEEEEECCCCccc-cccCHHHHHHHHH
Confidence 9999999999999999999998877 23356899999999999765 5688888989999
Q ss_pred HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 197 ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 197 ~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
..+++++++||++|.||+++|++|++.+.+...
T Consensus 146 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 146 GKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred HcCCcEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998875543
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=3e-25 Score=197.51 Aligned_cols=157 Identities=25% Similarity=0.453 Sum_probs=134.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||+++|+++.+... |++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 578999998 99999999999988765 6666664 4577899999999999999999999999999999999999
Q ss_pred EECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cccCH
Q psy18160 121 YDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEY 188 (373)
Q Consensus 121 ~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~v~~ 188 (373)
||++++.+|+.+ ..|+..+... .+++|+++|+||+|+.... +.+..
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 161 (207)
T 2fv8_A 104 FSVDSPDSLENIPEKWVPEVKHF----------------------CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRT 161 (207)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH----------------------STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCH
T ss_pred EECCCHHHHHHHHHHHHHHHHHh----------------------CCCCCEEEEEEchhhhccccchhhhhhcccCCCCH
Confidence 999999999999 5788777651 2578999999999996531 34778
Q ss_pred HHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 189 SEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 189 ~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+++.++++..+. +++++||++|.||+++|++|++.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 162 DDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 889999999988 89999999999999999999998764
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=1.9e-25 Score=198.62 Aligned_cols=158 Identities=25% Similarity=0.450 Sum_probs=133.8
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
....++++++|. |||||+++|+++.+... |++ +.....+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 456789999998 99999999999988765 555 44466778889999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------cc
Q psy18160 118 IIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RC 185 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-----------~~ 185 (373)
++|||++++.+|+.+. .|+..+.. . .+++|++||+||+|+.+.. +.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~---------------------~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 163 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRH---------------------H-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 163 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHH---------------------H-CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHH---------------------h-CCCCCEEEEEechhhccchhhhhhhhcccccc
Confidence 9999999999999997 78888776 2 2678999999999997641 23
Q ss_pred cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 186 VEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 186 v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+..+++.++++..+. +++++||++|.||+++|++|++.+
T Consensus 164 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 778889999999986 599999999999999999998764
No 81
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=1.2e-26 Score=230.13 Aligned_cols=214 Identities=14% Similarity=0.054 Sum_probs=137.6
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcc--------cccccchhhccCC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQE--------RYHTLAPMYYRNA 114 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e--------~~~~l~~~~~~~a 114 (373)
.+++++|. |||||+|+|++..+... ++|.+.......+......+.+|||+|++ ++...+..++++|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 47888887 99999999999887654 67765544444443334568999999986 5666778889999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~ 194 (373)
|++++|+|++++.++.+ .|+..+.+ ..+.|++||+||+|+..... ++.++
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~-----------------------~~~~pvilv~NK~D~~~~~~-----~~~~~ 133 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILY-----------------------RTKKPVVLAVNKLDNTEMRA-----NIYDF 133 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHT-----------------------TCCSCEEEEEECCCC----------CCCSS
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHH-----------------------HcCCCEEEEEECccCccchh-----hHHHH
Confidence 99999999998776554 23333222 24789999999999865311 11223
Q ss_pred HHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecccCC
Q psy18160 195 AEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANSN 273 (373)
Q Consensus 195 ~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~ 273 (373)
+ .+++ +++++||++|.|++++++++.+.+.+....
T Consensus 134 ~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~------------------------------------------- 169 (436)
T 2hjg_A 134 Y-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET------------------------------------------- 169 (436)
T ss_dssp G-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS-------------------------------------------
T ss_pred H-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc-------------------------------------------
Confidence 3 3455 789999999999999999998877521000
Q ss_pred CCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCccc--ccccCCccccccccceeeeecceeeeCC
Q psy18160 274 NSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFH--EYQESTIGGECQSSHSISFSMPTKNRLN 351 (373)
Q Consensus 274 ~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~--~~~~~Tig~~~~~~~~~~~~~~~~~v~~ 351 (373)
...+..+|++++|.++||||||+++++++.+. ..+.+ +. .++....+..+|
T Consensus 170 ------------------~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~g-tT--------~d~~~~~~~~~~ 222 (436)
T 2hjg_A 170 ------------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG-TT--------RDAVDTSFTYNQ 222 (436)
T ss_dssp ------------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------CCEEEEETT
T ss_pred ------------------cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCC-ce--------eeeeEEEEEECC
Confidence 00112479999999999999999999988763 33433 34 344445666777
Q ss_pred eEEEEEehhhHHH
Q psy18160 352 NNVPITFVWVIMM 364 (373)
Q Consensus 352 ~~~~l~iw~~~~~ 364 (373)
.. +.|||+|-+
T Consensus 223 ~~--~~l~DT~G~ 233 (436)
T 2hjg_A 223 QE--FVIVDTAGM 233 (436)
T ss_dssp EE--EEETTHHHH
T ss_pred eE--EEEEECCCc
Confidence 65 889999864
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=4.7e-25 Score=195.18 Aligned_cols=151 Identities=13% Similarity=0.146 Sum_probs=119.8
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
..+++++|. |||||+++|.++.+... |++.+ ...+.+++ +.+.+|||+|+++++.++..+++++|++++||
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 468999997 99999999999887655 66665 35677777 78999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE---- 197 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~---- 197 (373)
|++++.+|+.+..|+..+... ....++|+++|+||+|+.. .++.+++.+++..
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~ 157 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTD--------------------ETIANVPILILGNKIDRPE---AISEERLREMFGLYGQT 157 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTC--------------------GGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTC
T ss_pred ECCCHHHHHHHHHHHHHHHhC--------------------cccCCCcEEEEEECCCccc---cCCHHHHHHHhCccccc
Confidence 999999999999998887651 1235789999999999965 3677777776652
Q ss_pred -------------cCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 198 -------------NGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 198 -------------~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.+++++++||++|.||+++|++|++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 158 TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998654
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.93 E-value=1.3e-24 Score=191.15 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=124.2
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcC-c---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccC
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYP-Y---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRN 113 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~-~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ 113 (373)
..+.....+++++|. |||||+++|++..+.. . |+|.. ...+.. ..+.+.+|||+|++++..++..++++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEK--GRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEe--CCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 345667789999998 9999999999999887 3 77744 334443 45779999999999999999999999
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc--CCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM--APPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
+|++|+|||++++.+|+.+..|+..+... ..+... ...++|++||+||+|+... ...++.
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~ 148 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKH---------------EDIRRELPGGGRVPFLFFANKMDAAGA---KTAAEL 148 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTS---------------HHHHSBCTTSCBCCEEEEEECTTSTTC---CCHHHH
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhC---------------hhhhhcccccCCCCEEEEEECcCCCCC---CCHHHH
Confidence 99999999999999999999998887651 000000 1137899999999999765 222222
Q ss_pred HH------HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhc
Q psy18160 192 EA------YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV 229 (373)
Q Consensus 192 ~~------~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~ 229 (373)
.+ +++..+++++++||++|.||+++|++|++.+.++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 149 VEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp HHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred HHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 11 124467889999999999999999999998876543
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.92 E-value=1.1e-24 Score=191.44 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=125.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.++++++|. |||||+++|.++.+... |++.. ...+.+++ +.+.+|||+|++++..++..+++++|++++||
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 468999997 99999999999988766 66664 46777777 77999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE---- 197 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~---- 197 (373)
|++++.+|+.+..|+..+... ....++|+++|+||+|+.. .++.+++.+++..
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~ 155 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNI--------------------AELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTT 155 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCC
T ss_pred ECCChHHHHHHHHHHHHHHcc--------------------hhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCcccc
Confidence 999999999999998887651 1235789999999999975 3566776665432
Q ss_pred --------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 198 --------NGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 198 --------~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.+++++++||++|.||+++|++|++.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 156 GSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp C---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 34679999999999999999999764
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=5.9e-25 Score=188.32 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=124.5
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..++++++|. |||||+++|.++.+... |++.. .+.+.+++ +.+.+|||+|++++..++..+++++|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 4589999998 99999999999988766 66643 45666664 6789999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----HH
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----YA 195 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----~~ 195 (373)
||++++.+|..+..|+..+... ....++|+++|+||+|+.+. ...++..+ ++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~ 138 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEE--------------------EELRKAILVVFANKQDMEQA---MTSSEMANSLGLPAL 138 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGC
T ss_pred EECCCHHHHHHHHHHHHHHHhc--------------------hhhCCCEEEEEEECCCCcCC---CCHHHHHHHhCchhc
Confidence 9999999999999888777551 12257899999999999764 22222222 22
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+..+++++++||++|.||+++|++|++.+.+
T Consensus 139 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 139 KDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 3346689999999999999999999988764
No 86
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=7.5e-25 Score=190.92 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=123.2
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
...++++++|. |||||+++|.+..+... |+|. ..+.+.+++ +.+.+|||+|++++..++..+++++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 34689999997 99999999999877654 6663 345667764 678999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH----
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA---- 195 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~---- 195 (373)
|||++++.+|+.+..|+..+... ....++|+++|+||+|+.+. ...++..+..
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~ 146 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEE--------------------EKLSCVPVLIFANKQDLLTA---APASEIAEGLNLHT 146 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTC--------------------GGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGG
T ss_pred EEECcCHHHHHHHHHHHHHHHhC--------------------hhhcCCCEEEEEECcCcccC---CCHHHHHHHhCchh
Confidence 99999999999999888776541 12357899999999999764 2333332221
Q ss_pred -HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 196 -EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 196 -~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
...+++++++||++|.||+++|++|++.+.+
T Consensus 147 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 147 IRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred ccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 1234679999999999999999999988764
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=2.3e-25 Score=189.72 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=120.1
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYD 122 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D 122 (373)
++++++|. |||||+++|+++.+... |++.. ...+..+ .+.+.+|||+|++++..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 47899997 99999999999888765 66633 3445444 4679999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH-----HHH
Q psy18160 123 ITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY-----AEE 197 (373)
Q Consensus 123 ~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~-----~~~ 197 (373)
++++.+|+.+..|+..+... ....++|+++|+||+|+.+. ...++..+. ++.
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~ 133 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAE--------------------DELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRH 133 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSS
T ss_pred CCCHHHHHHHHHHHHHHHhc--------------------hhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccC
Confidence 99999999999998877651 12357899999999999654 222332221 122
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 198 ~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+++++++||++|.||+++|++|++.+.+
T Consensus 134 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 134 RNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 34679999999999999999999988764
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.4e-24 Score=187.72 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=125.9
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCc-CcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVV-FYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAA 117 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~-~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~i 117 (373)
...++++++|. |||||+++|++.. +... |++ +..+.+.+++ +.+.+|||+|++++..++..+++++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 45689999998 9999999999987 4443 665 4456677765 6789999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC--CCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160 118 IIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP--PNIVIALAGNKADLPTSRRCVEYSEGEAYA 195 (373)
Q Consensus 118 ilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilVgnK~Dl~~~~~~v~~~e~~~~~ 195 (373)
++|||++++.+|+.+..|+..+... ... .++|++||+||+|+... +..+++.+++
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~ 151 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNH--------------------PDIKHRRIPILFFANKMDLRDA---VTSVKVSQLL 151 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHS--------------------TTTTTSCCCEEEEEECTTSTTC---CCHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhC--------------------hhhccCCCeEEEEEeCcCcccC---CCHHHHHHHh
Confidence 9999999999999999998887761 111 57899999999999653 4556666655
Q ss_pred H-----HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 196 E-----ENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 196 ~-----~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
. ..+++++++||++|.||+++|++|.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 152 CLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 3 235789999999999999999999988753
No 89
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=1.9e-25 Score=197.05 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=123.8
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEE--E-CCEEEEEEEEeCCCcccccccc---hhh
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVC--L-DDVTIRFEIWDTAGQERYHTLA---PMY 110 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~--~-~~~~v~l~i~Dt~G~e~~~~l~---~~~ 110 (373)
..+....++++++|. |||||++++.+. +... |++.++..+.+. + ++..+.+++|||+|+++|..+. ..+
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 345566789999998 999999987764 4444 666555444443 3 3567889999999999998877 899
Q ss_pred ccCCcEEEEEEECCCH--hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC------
Q psy18160 111 YRNAQAAIIVYDITNQ--DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS------ 182 (373)
Q Consensus 111 ~~~ad~iilv~D~~~~--~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~------ 182 (373)
++++|++|+|||++++ +++..+..|+..+.. ..+++|++|||||+|+.+.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~ 150 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYK----------------------VNPDMNFEVFIHKVDGLSDDHKIET 150 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH----------------------HCTTCEEEEEEECGGGSCHHHHHHH
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHh----------------------cCCCCcEEEEEeccccCchhhhhHH
Confidence 9999999999999997 677777777776643 2358999999999998652
Q ss_pred CcccCHHHHHHHHH----HcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 183 RRCVEYSEGEAYAE----ENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 183 ~~~v~~~e~~~~~~----~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.+.+..+++.++++ .++++|+++||++ .||+++|+.|++.+
T Consensus 151 ~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 151 QRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 24566667788888 6788999999999 99999999999875
No 90
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=1.2e-23 Score=186.02 Aligned_cols=160 Identities=38% Similarity=0.575 Sum_probs=142.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
.++++++|. |||||++++++..+... |+|.++....+.+++..+.+.+||++|++++..++..++++++++++|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 578999997 99999999999988755 888888888999999999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCC
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGL 200 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~ 200 (373)
||+++..+|+++..|+..+.. ....+.|+++|+||+|+.+. +.+..+++.+++...++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~i~~v~nK~Dl~~~-~~~~~~~a~~l~~~~~~ 142 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRD---------------------HADSNIVIMLVGNKSDLRHL-RAVPTDEARAFAEKNNL 142 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECTTCGGG-CCSCHHHHHHHHHHTTC
T ss_pred EECcCHHHHHHHHHHHHHHHH---------------------hcCCCCeEEEEEECcccccc-cCcCHHHHHHHHHHcCC
Confidence 999999999999889887765 23357899999999999764 56778889999999999
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 201 LFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 201 ~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
.++++||+++.|++++|+.|.+.+.+..
T Consensus 143 ~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 143 SFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887543
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.92 E-value=8.2e-25 Score=192.62 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=119.4
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
....++++++|. |||||+++|+++.+... |++ +..+.+..++ +.+.+|||+|++++..++..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 345689999997 99999999999888755 665 4445566654 67899999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH----
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY---- 194 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~---- 194 (373)
+|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. ...++..+.
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~ 158 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQE--------------------DELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQ 158 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGG
T ss_pred EEEECCCHHHHHHHHHHHHHHhcc--------------------cccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcc
Confidence 999999999999999998887651 12357899999999999654 223332221
Q ss_pred -HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 195 -AEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 195 -~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++..+++++++||++|.||+++|++|++.+.
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 1223457999999999999999999998875
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.1e-24 Score=188.56 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=122.5
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..++++++|. |||||+++|+++.+... |+|.. .+.+.+++ +.+.+|||+|++++..++..+++++|++++|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 3589999998 99999999998888744 76644 34566665 7789999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH----
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE---- 196 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~---- 196 (373)
||++++++|+.+..|+..+... ....+.|+++|+||+|+.+. ...++..+...
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~ 147 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAH--------------------EDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSI 147 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTS--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGC
T ss_pred EeCCCHHHHHHHHHHHHHHHhc--------------------hhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhh
Confidence 9999999999999998887651 11357899999999999753 34455444332
Q ss_pred -HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 197 -ENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 197 -~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..+++++++||++|.||+++|++|++.+..
T Consensus 148 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 148 KDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp CSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred cCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 345689999999999999999999988764
No 93
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=8.1e-25 Score=217.08 Aligned_cols=213 Identities=17% Similarity=0.099 Sum_probs=140.1
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCcccc---------cccchhhcc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQERY---------HTLAPMYYR 112 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~---------~~l~~~~~~ 112 (373)
+++++|. |||||+|||++.++... +.|+ ++....+.+++.. +.+|||+|++.. ...+..+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 6788887 99999999999876533 3333 4455677777764 689999998752 344567899
Q ss_pred CCcEEEEEEECCCHhhHHH--HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGR--AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~--i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
+||++++|+|+++..++.+ +.+|+. . .+.|++||+||+|+... . ..+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~---~------------------------~~~p~ilv~NK~D~~~~---~-~~~ 129 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLR---K------------------------STVDTILVANKAENLRE---F-ERE 129 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHH---H------------------------HTCCEEEEEESCCSHHH---H-HHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H------------------------cCCCEEEEEeCCCCccc---c-HHH
Confidence 9999999999987655443 223322 2 25799999999998431 1 122
Q ss_pred H-HHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceee
Q psy18160 191 G-EAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILT 268 (373)
Q Consensus 191 ~-~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~ 268 (373)
+ .+++ .+++ +++++||++|.|++++|+++++.+.+...... ..
T Consensus 130 ~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~--~~-------------------------------- 174 (439)
T 1mky_A 130 VKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE--SK-------------------------------- 174 (439)
T ss_dssp THHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSS--SC--------------------------------
T ss_pred HHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccch--hc--------------------------------
Confidence 3 4444 4566 78999999999999999999988753210000 00
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecce
Q psy18160 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPT 346 (373)
Q Consensus 269 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~ 346 (373)
......+|++++|++|+|||||++++++..+ ...+..| . .+.....
T Consensus 175 -----------------------~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gt-T--------~d~~~~~ 222 (439)
T 1mky_A 175 -----------------------PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT-T--------RDPVDDE 222 (439)
T ss_dssp -----------------------CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------------CCEE
T ss_pred -----------------------cccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCC-c--------CCceEEE
Confidence 0001237999999999999999999998764 3334333 3 3444466
Q ss_pred eeeCCeEEEEEehhhHH
Q psy18160 347 KNRLNNNVPITFVWVIM 363 (373)
Q Consensus 347 ~~v~~~~~~l~iw~~~~ 363 (373)
+.++|++ +.+||++-
T Consensus 223 i~~~g~~--~~l~Dt~G 237 (439)
T 1mky_A 223 VFIDGRK--YVFVDTAG 237 (439)
T ss_dssp EEETTEE--EEESSCSC
T ss_pred EEECCEE--EEEEECCC
Confidence 7778874 67899863
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.92 E-value=2.4e-24 Score=187.41 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=122.7
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcE
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQA 116 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ 116 (373)
.+....++++++|. |||||+++|+++.+... |+|... +.+.+++ +.+.+|||+|++++..++..+++++|+
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 34456689999997 99999999999988444 777554 4566665 778999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH-
Q psy18160 117 AIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA- 195 (373)
Q Consensus 117 iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~- 195 (373)
+++|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. ...++..+..
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~ 148 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAH--------------------EDLRKAGLLIFANKQDVKEC---MTVAEISQFLK 148 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhC--------------------hhhCCCeEEEEEECCCcccC---CCHHHHHHHhC
Confidence 99999999999999999988877651 12367899999999999653 3444444432
Q ss_pred ----HHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 196 ----EENGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 196 ----~~~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
+..+++++++||++|.||+++|++|++.
T Consensus 149 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 149 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp GGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred cccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 2245689999999999999999998754
No 95
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.91 E-value=2.5e-23 Score=183.01 Aligned_cols=158 Identities=37% Similarity=0.583 Sum_probs=140.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... |++.++....+.+++..+.+++||++|++++..++..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34588999997 99999999999988755 8888998899999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHc
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEEN 198 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~ 198 (373)
+|||+++..+|+++..|+..+.. ....+.|+++|+||+|+.+. +.+..+++.+++...
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~---------------------~~~~~~~i~~v~nK~Dl~~~-~~~~~~~a~~l~~~~ 164 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRD---------------------HADSNIVIMLVGNKSDLRHL-RAVPTDEARAFAEKN 164 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH---------------------HSCTTCEEEEEEECGGGGGG-CCSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHH---------------------hcCCCCcEEEEEECcccccc-cccCHHHHHHHHHHc
Confidence 99999999999999889887665 23357899999999999764 557788899999999
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
++.++++||+++.|++++|+.|.+.+
T Consensus 165 ~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 165 GLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998764
No 96
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=2.9e-24 Score=188.08 Aligned_cols=155 Identities=16% Similarity=0.240 Sum_probs=123.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|+++.+... |++.++. .+..+ .+.+.+|||+|++++..++..+++++|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 35689999997 99999999999988754 7777654 34444 467899999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH---
Q psy18160 119 IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA--- 195 (373)
Q Consensus 119 lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~--- 195 (373)
+|||++++.+|+.+..|+..+... ....++|++||+||+|+... ...++..+..
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~ 152 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDK--------------------PQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLS 152 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHhC--------------------cccCCCCEEEEEECCCCccC---CCHHHHHHHhChh
Confidence 999999999999999988877651 12357899999999999754 2233322211
Q ss_pred --HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 196 --EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 196 --~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
...+++++++||++|.||+++|++|++.+.+
T Consensus 153 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 153 AIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1234679999999999999999999988764
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=1.1e-23 Score=183.51 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=124.4
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
...++++++|. |||||+++|+++..... |++.. .+.+.+++ +.+.+|||+|++++..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35689999998 99999999998883333 66643 45666664 678999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH---
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE--- 196 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~--- 196 (373)
|||++++.+|+.+..|+..+... ....++|+++|+||+|+.+. ...++..+...
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~ 148 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVE--------------------ERLAGATLLIFANKQDLPGA---LSCNAIQEALELDS 148 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGG
T ss_pred EEECcCHHHHHHHHHHHHHHHhC--------------------hhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhh
Confidence 99999999999999998877651 12357899999999999764 33344333221
Q ss_pred --HcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 197 --ENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 197 --~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..+++++++||++|.||+++|++|.+.+.+
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 149 IRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999999988764
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=3.7e-25 Score=193.32 Aligned_cols=157 Identities=12% Similarity=0.230 Sum_probs=121.5
Q ss_pred cEEEEEEcC---ChhHHHHHhhhC--cCcCc---ceeeeEEEEEEEE---CCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINV--VFYPY---LFSAAFITQTVCL---DDVTIRFEIWDTAGQERYHTLAPMYYRNAQ 115 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~--~~~~~---Tig~~~~~~~i~~---~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad 115 (373)
.++++++|. |||||+++|++. .+... |+|.++..+.+.+ ++..+.+.+|||+|+++|..+++.+++++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 368999998 999999999985 44433 8888887666654 346788999999999999999999999999
Q ss_pred EEEEEEECCCH-hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccC---HHHH
Q psy18160 116 AAIIVYDITNQ-DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE---YSEG 191 (373)
Q Consensus 116 ~iilv~D~~~~-~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~---~~e~ 191 (373)
++++|||++++ .+|+.+..|+..+... .+++|++|||||+|+.+. +.+. .+.+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~----------------------~~~~piilv~nK~Dl~~~-~~~~~~~~~~~ 138 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR----------------------ASSSPVILVGTHLDVSDE-KQRKACMSKIT 138 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH----------------------CTTCEEEEEEECGGGCCH-HHHHHHHHHHH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh----------------------CCCCcEEEEEECCCcccc-hhhHHHHHHHH
Confidence 99999999997 5899999999887661 247899999999999754 3332 2345
Q ss_pred HHHHHHcCCe----EEEEcCCCCC-CHHHHHHHHHHHcch
Q psy18160 192 EAYAEENGLL----FMETSAKTAM-NVNEIFVEIAKKLPK 226 (373)
Q Consensus 192 ~~~~~~~~~~----~~evSak~~~-gI~~lf~~L~~~i~~ 226 (373)
.++++.++++ ++++||+++. +++++++.|.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 139 KELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 5666667776 9999999997 999999999887764
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.91 E-value=2.4e-23 Score=197.81 Aligned_cols=157 Identities=25% Similarity=0.448 Sum_probs=137.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
..++++++|. |||||+++|+++.+... |++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 3479999997 99999999999988655 666555 5677889999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-----------CcccC
Q psy18160 120 VYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-----------RRCVE 187 (373)
Q Consensus 120 v~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-----------~~~v~ 187 (373)
|||++++.+|+.+. .|+..+... .+++|++||+||+|+... .+.+.
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~----------------------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 290 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHH----------------------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 290 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH----------------------CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhh----------------------CCCCcEEEEEEchhcccccchhhhcccccccccc
Confidence 99999999999987 688877661 237899999999998653 25688
Q ss_pred HHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 188 YSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 188 ~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.+++.++++..++ +++++||++|.||+++|+.|++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 291 YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 8899999999997 9999999999999999999998775
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=7.4e-24 Score=183.81 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=122.1
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
...++++++|. |||||++++.++++... |+|.. ...+.+++ +.+.+|||+|++++..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34589999997 99999999999888544 77644 35566665 678999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHH---
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE--- 196 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~--- 196 (373)
|||++++.+|+.+..|+..+... ....+.|+++|+||+|+.+. ...++..+...
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~ 148 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQE--------------------EELQDAALLVFANKQDQPGA---LSASEVSKELNLVE 148 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTS--------------------STTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHcC--------------------hhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCccc
Confidence 99999999999999988877651 12467899999999999654 34444444332
Q ss_pred --HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 197 --ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 197 --~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
..+++++++||++|.||+++|++|.+.+.++
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 149 LKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp CCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 1245799999999999999999999988654
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=2.7e-24 Score=188.05 Aligned_cols=154 Identities=20% Similarity=0.210 Sum_probs=123.9
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..++++++|. |||||+++|.++.+... |++.. .+.+.+++ +.+.+|||+|++++..++..+++++|++++|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 4589999997 99999999998887655 66644 44566654 6789999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH-----HH
Q psy18160 121 YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA-----YA 195 (373)
Q Consensus 121 ~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~-----~~ 195 (373)
||++++++|+.+..|+..+... ....++|+++|+||+|+.+. ...++..+ .+
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~ 153 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDE--------------------DELRKSLLLIFANKQDLPDA---ASEAEIAEQLGVSSI 153 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTC--------------------STTTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGC
T ss_pred EeCCCHHHHHHHHHHHHHHHhh--------------------hhcCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhc
Confidence 9999999999999888777551 23357899999999999764 22233222 12
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 196 ~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+..+++++++||+++.||+++|++|.+.+.+
T Consensus 154 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 154 MNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 2335689999999999999999999988864
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=5.7e-26 Score=201.49 Aligned_cols=160 Identities=26% Similarity=0.461 Sum_probs=134.6
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCc
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQ 115 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad 115 (373)
......++++++|. |||||+++|+++.+... |++..+ ...+.+++..+.+++|||+|++++..++..+++++|
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 103 (204)
Confidence 34456789999997 99999999999888665 665444 456677888899999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-----------
Q psy18160 116 AAIIVYDITNQDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR----------- 183 (373)
Q Consensus 116 ~iilv~D~~~~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~----------- 183 (373)
++++|||++++.+|+.+. .|+..+.. ..+++|++||+||+|+.+..
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~~l~~----------------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 3th5_A 104 VFLICFSLVSPASFENVRAKWYPEVRH----------------------HCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161 (204)
Confidence 999999999999999987 78777655 12378999999999997542
Q ss_pred cccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 184 RCVEYSEGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 184 ~~v~~~e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i 224 (373)
+.+..+++.++++..++ +++++||++|.||+++|++|++.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 24667778888988887 899999999999999999988754
No 103
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=8.5e-25 Score=217.94 Aligned_cols=215 Identities=13% Similarity=0.042 Sum_probs=139.5
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCC--------cccccccchhhccC
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAG--------QERYHTLAPMYYRN 113 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G--------~e~~~~l~~~~~~~ 113 (373)
..+++++|. |||||+|+|++.++... ++|.++......+......+.+|||+| ++++...+..++++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 357888887 99999999999888754 777777666666655556799999999 77788888889999
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
+|++|+|+|..+..+.. ..|+..+.+ ..+.|++||+||+|+.+. + ++..+
T Consensus 103 ad~il~VvD~~~~~~~~--d~~l~~~l~-----------------------~~~~pvilV~NK~D~~~~-~----~~~~e 152 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAA--DEEVAKILY-----------------------RTKKPVVLAVNKLDNTEM-R----ANIYD 152 (456)
T ss_dssp CSEEEEEEESSSCSCHH--HHHHHHHHT-----------------------TCCSCEEEEEECC--------------CC
T ss_pred CCEEEEEEeCCCCCChH--HHHHHHHHH-----------------------HcCCCEEEEEECccchhh-h----hhHHH
Confidence 99999999987644332 233333322 157899999999998643 1 11112
Q ss_pred HHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecccC
Q psy18160 194 YAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANS 272 (373)
Q Consensus 194 ~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~ 272 (373)
+. .+++ .++++||++|.|++++++.+.+.+......
T Consensus 153 ~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~------------------------------------------ 189 (456)
T 4dcu_A 153 FY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET------------------------------------------ 189 (456)
T ss_dssp SG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSS------------------------------------------
T ss_pred HH-HcCCCceEEeecccccchHHHHHHHHhhccccccc------------------------------------------
Confidence 22 2233 568999999999999999998765421000
Q ss_pred CCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc-ccccccCCccccccccceeeeecceeeeCC
Q psy18160 273 NNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGECQSSHSISFSMPTKNRLN 351 (373)
Q Consensus 273 ~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~ 351 (373)
......+|++++|++++|||||+++++... +.....+++. .++....+..++
T Consensus 190 -------------------~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt--------~~~~~~~~~~~~ 242 (456)
T 4dcu_A 190 -------------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT--------RDAVDTSFTYNQ 242 (456)
T ss_dssp -------------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--------------CTTSEEEEETT
T ss_pred -------------------ccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeE--------EEEEEEEEEECC
Confidence 001124799999999999999999999654 3333334444 344445566677
Q ss_pred eEEEEEehhhHH
Q psy18160 352 NNVPITFVWVIM 363 (373)
Q Consensus 352 ~~~~l~iw~~~~ 363 (373)
. .++|||+|-
T Consensus 243 ~--~~~l~DT~G 252 (456)
T 4dcu_A 243 Q--EFVIVDTAG 252 (456)
T ss_dssp E--EEEETTGGG
T ss_pred c--eEEEEECCC
Confidence 6 788999985
No 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=3e-24 Score=202.85 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=116.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcC-----c-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc---cchhhccCCcE
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYP-----Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT---LAPMYYRNAQA 116 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~-----~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~---l~~~~~~~ad~ 116 (373)
|++++|+ |||||++++.++.+.. . |+|.++.. ++ ..+.++||||+|||+|.. +++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 5788887 9999999988664432 1 88877642 23 348899999999999974 46899999999
Q ss_pred EEEEEECCCH--hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC------cccCH
Q psy18160 117 AIIVYDITNQ--DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR------RCVEY 188 (373)
Q Consensus 117 iilv~D~~~~--~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~------~~v~~ 188 (373)
+|+|||++++ +++..+.+|+..+.. ..+++|++|||||+|+.++. |.+..
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~----------------------~~~~ipillvgNK~DL~~~~~R~~~~R~V~~ 133 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYK----------------------VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQ 133 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHH----------------------HCTTCEEEEECCCCCSSCSHHHHHHHHHHHH
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhh----------------------cCCCCcEEEEEECcccCchhhhhhHHHHhhH
Confidence 9999999998 223333333443333 23689999999999997642 45777
Q ss_pred HHHHHHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 189 SEGEAYAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 189 ~e~~~~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
++++++|+. ++++|+|+||++ .||.++|..+++.+...
T Consensus 134 ~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 134 RTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp HHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred HHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 888888886 688999999997 69999999999888654
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.89 E-value=2e-23 Score=186.32 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=112.6
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCE-EEEEEEEeCCCcccccc-cchhhccCCcEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDV-TIRFEIWDTAGQERYHT-LAPMYYRNAQAA 117 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~-~v~l~i~Dt~G~e~~~~-l~~~~~~~ad~i 117 (373)
...++++++|. |||||+++|+++.|... +++.++. .+.+++. .+.+.+|||+|+++|.. ++..+++++|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 34578999997 99999999999988776 5555554 3666654 68899999999999988 889999999999
Q ss_pred EEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc-CHHHHHHH-
Q psy18160 118 IIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV-EYSEGEAY- 194 (373)
Q Consensus 118 ilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v-~~~e~~~~- 194 (373)
++|||+++.. ++..+.+|+..+... ......++|++||+||+|+....... ..+...+.
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l 144 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLID------------------SMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKEL 144 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHH------------------HHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhh------------------hhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHH
Confidence 9999999864 566665544443220 00123578999999999997642110 00111111
Q ss_pred -------------------------------HH-Hc--CCeEEEEcCCCC------CCHHHHHHHHHHHc
Q psy18160 195 -------------------------------AE-EN--GLLFMETSAKTA------MNVNEIFVEIAKKL 224 (373)
Q Consensus 195 -------------------------------~~-~~--~~~~~evSak~~------~gI~~lf~~L~~~i 224 (373)
+. .+ +++|+|+||++| .||+++|++|++.+
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 11 567999999999 99999999998753
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.7e-24 Score=197.30 Aligned_cols=159 Identities=17% Similarity=0.240 Sum_probs=120.8
Q ss_pred CCCcEEEEEEc-----------C-ChhHHHHHhhh---CcCcCc---ce-eeeEEEEEEE--------------ECCEEE
Q psy18160 44 QSDCMAQIWLK-----------D-RVDCMTQIVIN---VVFYPY---LF-SAAFITQTVC--------------LDDVTI 90 (373)
Q Consensus 44 ~~~~i~ivvlG-----------~-GKTsLl~rl~~---~~~~~~---Ti-g~~~~~~~i~--------------~~~~~v 90 (373)
....++++++| + |||||+++|++ +.+... |+ +.++..+.+. +++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 44568999999 6 99999999999 455443 33 4444333222 467889
Q ss_pred EEEEEe-----------------------CCCcccccccchhhcc---------------------CCcEEEEEEECCCH
Q psy18160 91 RFEIWD-----------------------TAGQERYHTLAPMYYR---------------------NAQAAIIVYDITNQ 126 (373)
Q Consensus 91 ~l~i~D-----------------------t~G~e~~~~l~~~~~~---------------------~ad~iilv~D~~~~ 126 (373)
.++||| ++|+++|..++..+++ +||++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 8889999999999988 89999999999998
Q ss_pred --hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH-cCCeEE
Q psy18160 127 --DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFM 203 (373)
Q Consensus 127 --~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~-~~~~~~ 203 (373)
.||+.+.+|+..+... ....++|++||+||+|+.+. +.+ +++.++++. .+++++
T Consensus 176 ~~~s~~~~~~~l~~i~~~--------------------~~~~~~piilV~NK~Dl~~~-~~v--~~~~~~~~~~~~~~~~ 232 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQ--------------------LAKTKKPIVVVLTKCDEGVE-RYI--RDAHTFALSKKNLQVV 232 (255)
T ss_dssp ---CHHHHHHHHHHHHHH--------------------HHHTTCCEEEEEECGGGBCH-HHH--HHHHHHHHTSSSCCEE
T ss_pred chhhHHHHHHHHHHHHHH--------------------hccCCCCEEEEEEccccccc-HHH--HHHHHHHHhcCCCeEE
Confidence 9999999999888651 12257899999999999654 333 577788876 478999
Q ss_pred EEcCCCCCCHHHHHHHHHHHcc
Q psy18160 204 ETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 204 evSak~~~gI~~lf~~L~~~i~ 225 (373)
++||++|.||+++|++|++.+.
T Consensus 233 e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 233 ETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988663
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=1.1e-22 Score=174.39 Aligned_cols=147 Identities=16% Similarity=0.126 Sum_probs=113.5
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccc------ccchhhcc--
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH------TLAPMYYR-- 112 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~------~l~~~~~~-- 112 (373)
..+++++|. |||||+++|++..+... +.+.++....+.+++ ..+.+|||+|++++. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 368899997 99999999998776544 334455555666766 468999999999875 34466765
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE 192 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~ 192 (373)
++|++++|+|+++.++ ...|+..+.+ .++|+++|+||+|+... +.+.. ++.
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~------------------------~~~p~ilv~nK~Dl~~~-~~~~~-~~~ 131 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME------------------------MGANLLLALNKMDLAKS-LGIEI-DVD 131 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH------------------------TTCCEEEEEECHHHHHH-TTCCC-CHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh------------------------cCCCEEEEEEchHhccc-cChhh-HHH
Confidence 8999999999988543 3456666554 36899999999998543 33332 467
Q ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
++++.++++++++||++|.||+++|++|++.+
T Consensus 132 ~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 132 KLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred HHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 88888899999999999999999999998876
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=190.06 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=118.6
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
...++++++|. |||||+++|.+..+... |++..+ ..+..++ +.+.||||+|+++|..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 35678999998 99999999999988766 666554 3444444 679999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH----
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA---- 195 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~---- 195 (373)
|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. ...++.....
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~piilV~NK~Dl~~~---~~~~~i~~~~~~~~ 295 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAE--------------------DELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHS 295 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTC--------------------GGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTCTT
T ss_pred EEECCchHHHHHHHHHHHHHHhh--------------------hccCCCeEEEEEECccCCcc---cCHHHHHHHhchhh
Confidence 99999999999999887776541 23358999999999999764 2233332221
Q ss_pred -HHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 196 -EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 196 -~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
+..+++++++||++|.||+++|+.|++.+.+
T Consensus 296 ~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 296 LRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 1234579999999999999999999988764
No 109
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.87 E-value=1e-21 Score=185.82 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=126.6
Q ss_pred cEEEEEEcC---ChhHHHHHhhhC--cCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc-----cccchhhcc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINV--VFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY-----HTLAPMYYR 112 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~--~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~-----~~l~~~~~~ 112 (373)
.++++++|. |||||+++|+++ .+... |++.++. .+.+++ .+.+.+|||+|++++ ..++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 478999997 999999999987 33321 7777665 444554 578999999999998 788999999
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC-Ccc----cC
Q psy18160 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS-RRC----VE 187 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~-~~~----v~ 187 (373)
++|++++|||++++++|+++..|...+... . ...+++|++||+||+|+.+. .+. +.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l------------------~-~~~~~~piilv~NK~Dl~~~~~r~~~~~v~ 140 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQL------------------R-KYSPDAKIFVLLHKMDLVQLDKREELFQIM 140 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHH------------------H-HHCTTCEEEEEEECGGGSCHHHHHHHHHHH
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHH------------------H-HhCCCCeEEEEEecccccchhhhhHHHHHH
Confidence 999999999999999999998776655441 1 12367999999999999762 133 56
Q ss_pred HHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 188 YSEGEAYAEENG---LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 188 ~~e~~~~~~~~~---~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+++.++++.+| ++++++||++ .++.++|..++..+..
T Consensus 141 ~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 141 MKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp HHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 678889999987 7899999999 8999999999887653
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=2.2e-21 Score=195.20 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=124.2
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iil 119 (373)
...++++++|. |||||+++|++.++... |++.++. .+.+++ +.+.||||+|+++|..++..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 34689999997 99999999999987766 7776543 444444 679999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH----
Q psy18160 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA---- 195 (373)
Q Consensus 120 v~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~---- 195 (373)
|||++++.+|+.+..|+..+... ....++|++||+||+|+.+. ...++..+..
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~--------------------~~~~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~ 452 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIIND--------------------REMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTR 452 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTS--------------------GGGTTCEEEEEEECCSSSSC---CCHHHHHHHTTCTT
T ss_pred EEECcchhHHHHHHHHHHHHhhh--------------------hhcCCCcEEEEEECCCCCcC---CCHHHHHHHhchhh
Confidence 99999999999999888887651 22357999999999999754 2333332221
Q ss_pred -HHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhcc
Q psy18160 196 -EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230 (373)
Q Consensus 196 -~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~ 230 (373)
...+++++++||++|.||+++|++|.+.+.++...
T Consensus 453 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 453 IRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-----
T ss_pred hhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 11234699999999999999999999988755443
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=4.9e-21 Score=172.96 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=113.8
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCc------cc----ccccch
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQ------ER----YHTLAP 108 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~------e~----~~~l~~ 108 (373)
...++++++|. |||||+++|++..+... ....+.....+..++ +.+.+|||+|+ ++ +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 45689999997 99999999999987633 111223233334444 57899999999 43 222 23
Q ss_pred hhccCCcEEEEEEECCCHhhHHH--HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 109 MYYRNAQAAIIVYDITNQDTFGR--AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~Sf~~--i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
.++..+|++++|||++++.+|.. ...|+..+.. ..+++|+++|+||+|+.+. +.+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~----------------------~~~~~piilv~nK~Dl~~~-~~~ 160 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS----------------------VFSNKSIVIGFNKIDKCNM-DSL 160 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT----------------------CC-CCCEEEEEECGGGCC---CC
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHH----------------------hhcCCcEEEEEeCcccCCc-hhh
Confidence 45788999999999999988752 2345555543 2247899999999999765 445
Q ss_pred CHH---HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 187 EYS---EGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 187 ~~~---e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
..+ .+.++++..+ ++++++||++|.||+++|++|++.+.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 161 SIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 443 4667777777 89999999999999999999999886543
No 112
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.86 E-value=5.8e-23 Score=193.84 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=108.6
Q ss_pred hHHHHHhhhCcCc-Cc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh-hHHHH
Q psy18160 58 DCMTQIVINVVFY-PY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRA 132 (373)
Q Consensus 58 TsLl~rl~~~~~~-~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i 132 (373)
.+|+.+|+.+.|. .. |+|..+. ..+..++ .+++||| +++|..+++.+++++|++|+|||++++. +|+.+
T Consensus 31 ~sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l 104 (301)
T 1u0l_A 31 GERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII 104 (301)
T ss_dssp CCEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred CcEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence 3799999999997 44 9995553 3332333 6899999 9999999999999999999999999997 79999
Q ss_pred HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcC--CeEEEEcCCCC
Q psy18160 133 KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG--LLFMETSAKTA 210 (373)
Q Consensus 133 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~--~~~~evSak~~ 210 (373)
.+|+..+.. .++|++||+||+||.+. +.+ +++.++++.++ ++++++||++|
T Consensus 105 ~~~l~~~~~------------------------~~~piilv~NK~DL~~~-~~v--~~~~~~~~~~~~~~~~~~~SAktg 157 (301)
T 1u0l_A 105 DKFLVLAEK------------------------NELETVMVINKMDLYDE-DDL--RKVRELEEIYSGLYPIVKTSAKTG 157 (301)
T ss_dssp HHHHHHHHH------------------------TTCEEEEEECCGGGCCH-HHH--HHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHHHHHHH------------------------CCCCEEEEEeHHHcCCc-hhH--HHHHHHHHHHhhhCcEEEEECCCC
Confidence 999987755 47899999999999754 322 55777888777 89999999999
Q ss_pred CCHHHHHHHHH
Q psy18160 211 MNVNEIFVEIA 221 (373)
Q Consensus 211 ~gI~~lf~~L~ 221 (373)
.||+++|..+.
T Consensus 158 ~gv~~lf~~l~ 168 (301)
T 1u0l_A 158 MGIEELKEYLK 168 (301)
T ss_dssp TTHHHHHHHHS
T ss_pred cCHHHHHHHhc
Confidence 99999998763
No 113
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=2.6e-21 Score=166.75 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=113.8
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI 118 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~ii 118 (373)
...++++++|. |||||+++|++..+... +++.++....+.+++.. +.+|||+|++++..++..+++.+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34578999997 99999999999988765 45555555667777754 679999999999999999999999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHH
Q psy18160 119 IVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195 (373)
Q Consensus 119 lv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~ 195 (373)
+|||+++ +.+++.+ ..+.. .++|+++|+||+|+.+. ..++.....
T Consensus 84 ~v~d~~~~~~~~~~~~l----~~~~~------------------------~~~p~ilv~nK~Dl~~~----~~~~~~~~~ 131 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAI----NHAKA------------------------ANVPIIVAINKMDKPEA----NPDRVMQEL 131 (178)
T ss_dssp EEEETTCCCCHHHHHHH----HHHGG------------------------GSCCEEEEEETTTSSCS----CHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH----HHHHh------------------------CCCCEEEEEECccCCcC----CHHHHHHHH
Confidence 9999988 4444332 22222 46899999999999653 223333332
Q ss_pred HHc-------C--CeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 196 EEN-------G--LLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 196 ~~~-------~--~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
... + ++++++||++|.||+++|++|++.+...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 132 MEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp TTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred HhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 222 2 5899999999999999999999887643
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=1.8e-21 Score=169.52 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=118.7
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccc------ccchhhcc-
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH------TLAPMYYR- 112 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~------~l~~~~~~- 112 (373)
..++++++|. |||||+++|++..+... +++.++....+.+++ +.+.+|||+|++++. .++..+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 4578999997 99999999998765444 445556666777766 668999999999885 34666765
Q ss_pred -CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 113 -NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 113 -~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
.+|++++|+|.++ ++....|+..+.. .++|+++|+||+|+... +.+. +++
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~------------------------~~~piilv~nK~Dl~~~-~~~~-~~~ 134 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME------------------------MGANLLLALNKMDLAKS-LGIE-IDV 134 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT------------------------TTCCEEEEEECHHHHHH-TTCC-CCH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh------------------------cCCCEEEEEEhhhcccc-ccch-HHH
Confidence 5999999999875 5556667766654 46899999999998643 2233 356
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
.++++.++++++++||+++.||+++|++|++.+....
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 135 DKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 7888888999999999999999999999998886543
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=1.6e-21 Score=170.94 Aligned_cols=157 Identities=12% Similarity=0.068 Sum_probs=110.1
Q ss_pred cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCC----------cccc
Q psy18160 40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAG----------QERY 103 (373)
Q Consensus 40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G----------~e~~ 103 (373)
+..+....++++++|. |||||+++|++..|... +++.+.......+++ .+.+|||+| ++.+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~ 92 (195)
T 1svi_A 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAW 92 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHH
T ss_pred hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHH
Confidence 3445556789999997 99999999999875543 555444444445554 489999999 7888
Q ss_pred cccchhhccCC---cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160 104 HTLAPMYYRNA---QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180 (373)
Q Consensus 104 ~~l~~~~~~~a---d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 180 (373)
..++..+++.+ |++++|+|++++.++.+.. ++..+.. .++|+++|+||+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~------------------------~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY------------------------YGIPVIVIATKADKI 147 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH------------------------TTCCEEEEEECGGGS
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH------------------------cCCCEEEEEECcccC
Confidence 88888888877 9999999999988776643 2222222 467999999999997
Q ss_pred CCCcccCH--HHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 181 TSRRCVEY--SEGEA-YAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 181 ~~~~~v~~--~e~~~-~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+. +.+.. +++.+ ++...+.+++++||+++.||+++|++|.+.+.
T Consensus 148 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 148 PK-GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CG-GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred Ch-HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 64 22221 22332 32234678999999999999999999988764
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.85 E-value=9.1e-22 Score=171.46 Aligned_cols=160 Identities=15% Similarity=0.076 Sum_probs=118.7
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCC-----------cccccccchhhcc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAG-----------QERYHTLAPMYYR 112 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G-----------~e~~~~l~~~~~~ 112 (373)
++++++|. |||||+++|++..+... +.+.++....+.++ .+.+|||+| ++++..++..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 57889997 99999999999988765 33433333444444 588999999 7788888888898
Q ss_pred C-CcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 113 N-AQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 113 ~-ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
+ ++++++||++.|..+|..+ ..|...-.. ......... ....++|+++|+||+|+... + .++
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~---------~~~~~~~~~---~~~~~~piilv~nK~Dl~~~-~---~~~ 141 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEI---------PIDVEFYQF---LRELDIPTIVAVNKLDKIKN-V---QEV 141 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCC---------CHHHHHHHH---HHHTTCCEEEEEECGGGCSC-H---HHH
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCcc---------HHHHHHHHH---HHhcCCceEEEeehHhccCc-H---HHH
Confidence 8 9999999999999999887 567542000 000000000 11257899999999999764 2 567
Q ss_pred HHHHHHHcCCe-------EEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 191 GEAYAEENGLL-------FMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 191 ~~~~~~~~~~~-------~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+.++++.++++ ++++||++|.||+++|++|++.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 78888888874 79999999999999999999988654
No 117
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=3.9e-21 Score=162.74 Aligned_cols=144 Identities=17% Similarity=0.062 Sum_probs=104.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccc-------cccchhhccC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERY-------HTLAPMYYRN 113 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~-------~~l~~~~~~~ 113 (373)
.+++++|. |||||+++|.+..+... +...++....+..++. .+.+|||+|++.+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 57888887 99999999999876532 3334455566777775 5789999999873 3445667899
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
+|++++|||++++.+... .|+..+.. . .++|+++|+||+|+.+. .+++.+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~---------------------~--~~~p~ilv~nK~Dl~~~-----~~~~~~ 129 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLR---------------------R--KGKPVILVATKVDDPKH-----ELYLGP 129 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHH---------------------H--HTCCEEEEEECCCSGGG-----GGGCGG
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHH---------------------h--cCCCEEEEEECcccccc-----hHhHHH
Confidence 999999999998654332 22222222 0 36799999999999653 133445
Q ss_pred HHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 194 YAEENGL-LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 194 ~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i 224 (373)
++ .+++ +++++||++|.|++++|++|++.+
T Consensus 130 ~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 130 LY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp GG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred HH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 55 5677 899999999999999999998875
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=4.3e-21 Score=165.84 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=110.5
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhhc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMYY 111 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~~ 111 (373)
..+++++|. |||||+++|++..+... +.+.++....+.+++.. +.+|||+|++++.... ..++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 368999997 99999999998865322 34456667788888754 7899999997653221 2358
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
+++|++++|||++++.+++. ..|+..+.. ....++|+++|+||+|+.+...
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~---------------------~~~~~~p~ilv~NK~Dl~~~~~------- 132 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIA---------------------RLPAKLPITVVRNKADITGETL------- 132 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHH---------------------HSCTTCCEEEEEECHHHHCCCC-------
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---------------------hcccCCCEEEEEECccCCcchh-------
Confidence 89999999999999888763 467666655 2335789999999999854311
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+++..+.+++++||++|.||+++|++|.+.+..
T Consensus 133 -~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 133 -GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp -EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred -hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 1122246789999999999999999999987753
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=2.7e-20 Score=162.54 Aligned_cols=156 Identities=14% Similarity=0.129 Sum_probs=114.7
Q ss_pred cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCC----------ccccc
Q psy18160 40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAG----------QERYH 104 (373)
Q Consensus 40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G----------~e~~~ 104 (373)
...+....++++++|. |||||+++|++..+... +.+.+........+. .+.+|||+| ++.+.
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence 3445566789999997 99999999999985554 555444333333443 477999999 77788
Q ss_pred ccchhhccCC---cEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 105 TLAPMYYRNA---QAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 105 ~l~~~~~~~a---d~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
.++..+++.+ |++++|+|.++..+.. .+.+|+ .. .++|+++|+||+|+
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~---~~------------------------~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWM---KS------------------------LNIPFTIVLTKMDK 145 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH------------------------TTCCEEEEEECGGG
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHH---HH------------------------cCCCEEEEEEChhc
Confidence 8888888776 9999999998764333 333333 22 26799999999999
Q ss_pred CCCC-cccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 180 PTSR-RCVEYSEGEAYAEENG-LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 180 ~~~~-~~v~~~e~~~~~~~~~-~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.+.. +....+++.+++...+ ++++++||++|.||+++|++|.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 146 VKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 6531 2344455666666644 78999999999999999999998775
No 120
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.82 E-value=1.1e-20 Score=191.82 Aligned_cols=158 Identities=15% Similarity=0.203 Sum_probs=120.9
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEE------EEE--CCEEEEEEEEeCCCcccccccchh
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQT------VCL--DDVTIRFEIWDTAGQERYHTLAPM 109 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~------i~~--~~~~v~l~i~Dt~G~e~~~~l~~~ 109 (373)
....++++++|. |||||++++++..|... |+|.++..+. +.+ ++..+.+.+|||+|++.|..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 345689999997 99999999999988765 8888876542 222 334678999999999999999999
Q ss_pred hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
+++++|++|+|||+++. +.+..|+..+... .++.|++||+||+|+... +.+..+
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~----------------------~~~~pvilV~NK~Dl~~~-~~v~~~ 171 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY----------------------GGKSPVIVVMNKIDENPS-YNIEQK 171 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHH----------------------SSSCCEEEEECCTTTCTT-CCCCHH
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHh----------------------CCCCCEEEEEECCCcccc-cccCHH
Confidence 99999999999999765 4566788877762 246899999999999765 667888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
++.+++...+.+++++||++|.||+++|+.|++.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 172 KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp HHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred HHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 88889888999999999999999999999999887653
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=3.1e-20 Score=171.31 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=113.0
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc-ceee--eEEEEEEEECCEEEEEEEEeCCCccccccc------chhhc--
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-LFSA--AFITQTVCLDDVTIRFEIWDTAGQERYHTL------APMYY-- 111 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l------~~~~~-- 111 (373)
..++++++|. |||||+|+|++..+... ..|. +.....+..++ ..+.+|||+|++.+... ...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 3578999997 99999999999876544 2333 33333444444 67899999999888753 35666
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
..+|++++|+|+++.++.. .|...+.. .++|+++|+||+|+... +.+.. ++
T Consensus 82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~------------------------~~~pvilv~NK~Dl~~~-~~i~~-~~ 132 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL---YLLLEILE------------------------MEKKVILAMTAIDEAKK-TGMKI-DR 132 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH---HHHHHHHT------------------------TTCCEEEEEECHHHHHH-TTCCB-CH
T ss_pred cCCCEEEEEeCCCchhhHH---HHHHHHHh------------------------cCCCEEEEEECcCCCCc-cchHH-HH
Confidence 5899999999999866433 35555544 36899999999998643 33332 46
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++++.++++++++||++|.||+++|+.|.+.+.
T Consensus 133 ~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 133 YELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 7888999999999999999999999999988654
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.81 E-value=2.1e-20 Score=173.69 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=114.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCccccc------ccchhhcc--CC
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH------TLAPMYYR--NA 114 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~------~l~~~~~~--~a 114 (373)
.++++++|. |||||+|+|++..+... ..|.++..+...++. .+.+.+|||+|++.+. .+.+.|+. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 468899997 99999999998764433 445544445555665 5679999999999886 45667776 69
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH
Q psy18160 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194 (373)
Q Consensus 115 d~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~ 194 (373)
|++++|+|+++.+++ ..|...+.. .++|+++|+||+|+... +.+. .++.++
T Consensus 82 d~vi~V~D~t~~e~~---~~~~~~l~~------------------------~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l 132 (272)
T 3b1v_A 82 DSILNVVDATNLERN---LYLTTQLIE------------------------TGIPVTIALNMIDVLDG-QGKK-INVDKL 132 (272)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHH------------------------TCSCEEEEEECHHHHHH-TTCC-CCHHHH
T ss_pred CEEEEEecCCchHhH---HHHHHHHHh------------------------cCCCEEEEEEChhhCCc-CCcH-HHHHHH
Confidence 999999999886543 345555544 46899999999998643 2233 356778
Q ss_pred HHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 195 ~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++.++++++++||++|.||+++|++|++.+.
T Consensus 133 ~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 133 SYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred HHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 8889999999999999999999999988654
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=1.1e-19 Score=171.99 Aligned_cols=159 Identities=12% Similarity=0.033 Sum_probs=121.2
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeee--EEEEEEEECCEEEEEEEEeCCCccccc----------
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAA--FITQTVCLDDVTIRFEIWDTAGQERYH---------- 104 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~--~~~~~i~~~~~~v~l~i~Dt~G~e~~~---------- 104 (373)
+++...-+++++|. |||||+|+|++.++... +.+.+ .....+..+ ....+.||||+|+.++.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 34556678999997 99999999999988754 22221 112223333 14678899999996654
Q ss_pred ccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160 105 TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR 184 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~ 184 (373)
.....+++.+|++++|+|+++..++.+...|+..+.. .++|+++|+||+|+... +
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~------------------------~~~pvilV~NK~Dl~~~-~ 138 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP------------------------LNKPVIVVINKIDKIGP-A 138 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG------------------------GCCCEEEEEECGGGSSS-G
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh------------------------cCCCEEEEEECccCCCC-H
Confidence 4567788999999999999998888887777766654 46899999999999733 4
Q ss_pred ccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 185 CVEYSEGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 185 ~v~~~e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
....+...++.+.++ .+++++||++|.|++++|+.|.+.+..
T Consensus 139 ~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 139 KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 455666777888775 789999999999999999999998864
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=1e-19 Score=162.95 Aligned_cols=162 Identities=10% Similarity=-0.015 Sum_probs=110.2
Q ss_pred cCCCCCCcEEEEEEcC---ChhHHHHHhhhCcC-cCc--ceeeeEEEEEEEEC-CEEEEEEEEeCCC----------ccc
Q psy18160 40 SGKRQSDCMAQIWLKD---RVDCMTQIVINVVF-YPY--LFSAAFITQTVCLD-DVTIRFEIWDTAG----------QER 102 (373)
Q Consensus 40 ~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~-~~~--Tig~~~~~~~i~~~-~~~v~l~i~Dt~G----------~e~ 102 (373)
...+....++++++|. |||||+++|++..+ ... +.|.+.......+. .....+.||||+| ++.
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 3445556789999998 99999999999873 222 44443333344443 3346689999999 455
Q ss_pred ccccchhhccC---CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 103 YHTLAPMYYRN---AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 103 ~~~l~~~~~~~---ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
+..+...|++. +|++++|+|+++..+.. ...|+..+.. .++|+++|+||+|+
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~------------------------~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP------------------------TGKPIHSLLTKCDK 156 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG------------------------GCCCEEEEEECGGG
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh------------------------cCCCEEEEEecccc
Confidence 56667777766 78899999998754422 2234444433 46799999999998
Q ss_pred CCCCccc--CHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 180 PTSRRCV--EYSEGEAYAEE-------NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 180 ~~~~~~v--~~~e~~~~~~~-------~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
... +.. ..++..+.... .+.+++++||++|.||+++|++|.+.+...
T Consensus 157 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 157 LTR-QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp SCH-HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCh-hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 653 111 11222232332 457899999999999999999999888643
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=3e-20 Score=166.04 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=104.4
Q ss_pred ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchh
Q psy18160 39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPM 109 (373)
Q Consensus 39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~ 109 (373)
|..+.....++++++|. |||||+++|++..+... +++.++ ..+.+.+|||+|++++..++..
T Consensus 4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~ 74 (218)
T 1nrj_B 4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD 74 (218)
T ss_dssp ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence 33444556789999997 99999999999987653 333222 3456899999999999999999
Q ss_pred hccC----CcEEEEEEECC-CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc
Q psy18160 110 YYRN----AQAAIIVYDIT-NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR 184 (373)
Q Consensus 110 ~~~~----ad~iilv~D~~-~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~ 184 (373)
+++. +|++++|||++ ++.+|..+..|+..+.... ......++|++||+||+|+... +
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~p~ilv~nK~Dl~~~-~ 136 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSIT-----------------ESSCENGIDILIACNKSELFTA-R 136 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHH-----------------HHHSTTCCCEEEEEECTTSTTC-C
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcc-----------------cccccCCCCEEEEEEchHhccc-C
Confidence 9887 99999999999 8899999998888776510 0013467999999999999765 3
Q ss_pred ccC------HHHHHHHHHHcCCeEEEEcCCCCCC
Q psy18160 185 CVE------YSEGEAYAEENGLLFMETSAKTAMN 212 (373)
Q Consensus 185 ~v~------~~e~~~~~~~~~~~~~evSak~~~g 212 (373)
.+. .+++.+++...+.+++++||+++.+
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 137 PPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 333 4556777777788999999998875
No 126
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=2.3e-19 Score=165.25 Aligned_cols=144 Identities=14% Similarity=0.055 Sum_probs=110.9
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc----------cchhhc-
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT----------LAPMYY- 111 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~----------l~~~~~- 111 (373)
+++++|. |||||+|+|++..+... +.+.+.....+.+++. .+.+|||||+..+.. +.+.|+
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 6888887 99999999999875544 4445566677777775 688999999988764 556677
Q ss_pred -cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 112 -RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 112 -~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
+++|++++|+|+++.+++..+..| +.. .++|+++|+||+|+... +.+.. .
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l~~~---l~~------------------------~~~pvilv~NK~Dl~~~-~~~~~-~ 131 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYLTSQ---LFE------------------------LGKPVVVALNMMDIAEH-RGISI-D 131 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHHH---HTT------------------------SCSCEEEEEECHHHHHH-TTCEE-C
T ss_pred hCCCCEEEEEeeCCCchhHHHHHHH---HHH------------------------cCCCEEEEEEChhcCCc-CCcHH-H
Confidence 899999999999987665544332 222 36899999999998643 22221 2
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 191 GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 191 ~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
...+++.++++++++||++|.|++++|+.|.+.
T Consensus 132 ~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 132 TEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 456778889999999999999999999999875
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=7.9e-19 Score=173.83 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=114.5
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCc----------ccccccc
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQ----------ERYHTLA 107 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~----------e~~~~l~ 107 (373)
...++++++|. |||||+|+|++..+... +.+.+.....+.+++.. +.||||+|+ |+|..++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 45689999997 99999999999876522 33344445566777754 789999998 5555444
Q ss_pred h-hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 108 P-MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 108 ~-~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
. .+++.+|++++|+|++++.++++. +|+..+.. .+.|+++|+||+|+.+. +.+
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~------------------------~~~~iiiv~NK~Dl~~~-~~~ 304 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE------------------------AGKAVVIVVNKWDAVDK-DES 304 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH------------------------TTCEEEEEEECGGGSCC-CTT
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH------------------------cCCcEEEEEECccCCCc-chH
Confidence 4 478899999999999998888776 47666655 47899999999999765 334
Q ss_pred CHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 187 EYSEGEA-YAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 187 ~~~e~~~-~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
..++..+ +.+. .+.+++++||++|.||+++|+.+.+.+...
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 305 TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 4444332 2232 357999999999999999999998877643
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=1.3e-18 Score=173.16 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=117.3
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCC----------ccccccc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAG----------QERYHTL 106 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G----------~e~~~~l 106 (373)
....++++++|. |||||+++|++...... +.+.+.....+.+++. .+.||||+| +|+|..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 345688999997 99999999997753322 3333433456667775 688999999 7777776
Q ss_pred chh-hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160 107 APM-YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185 (373)
Q Consensus 107 ~~~-~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~ 185 (373)
+.. +++.+|++++|+|+++..+.. ..+|+..+.. .+.|++||+||+|+.+. +.
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~------------------------~~~~~ilv~NK~Dl~~~-~~ 323 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE------------------------AGKAVVIVVNKWDAVDK-DE 323 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH------------------------TTCEEEEEEECGGGSCC-CS
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH------------------------cCCCEEEEEEChhcCCC-ch
Confidence 654 788999999999998754422 2345555544 46899999999999765 55
Q ss_pred cCHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 186 VEYSEGEAYAEEN-----GLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 186 v~~~e~~~~~~~~-----~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+..+++.+.++.. +.+++++||++|.||+++|+.+.+.+....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 324 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 6677777777665 578999999999999999999998876543
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=3.3e-19 Score=175.11 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=114.3
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc------
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA------ 107 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~------ 107 (373)
..+....++++++|. |||||+++|++..+... ....+...+.+.+.+.. .+.+|||+|++++..+.
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~ 106 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEK 106 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHH
Confidence 345567789999997 99999999999887533 23334445666676542 68999999999887653
Q ss_pred -hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 108 -PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 108 -~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
..+++++|++++|||+...+ ....|+..+.. .++|+++|+||+|+... +..
T Consensus 107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~------------------------~~~piIvV~NK~Dl~~~-~~~ 158 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKE------------------------MEIPFVVVVNKIDVLGE-KAE 158 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHH------------------------TTCCEEEECCCCTTTTC-CCT
T ss_pred HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHh------------------------cCCCEEEEEeCcCCCCc-cHH
Confidence 44788999999999994333 23456666665 37899999999999775 222
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+.+.++++.++++++++||++|.|++++|+.|.+.+.+.
T Consensus 159 --~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 159 --ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp --HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred --HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 566677777889999999999999999999999998654
No 130
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=5.4e-19 Score=164.43 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=110.9
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc----------chhh
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL----------APMY 110 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l----------~~~~ 110 (373)
.++++++|. |||||+|+|++..+... +...+.....+..++. .+.+|||||++.+... ...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 478999997 99999999999876444 3444555666666664 4678999999887632 3333
Q ss_pred c--cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 111 Y--RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 111 ~--~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
+ +.+|++++|+|+++.++... |...+.. .++|+++|+||+|+.+. +.+.
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~------------------------~~~p~ivv~NK~Dl~~~-~~~~- 131 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLY---LTLQLLE------------------------LGIPCIVALNMLDIAEK-QNIR- 131 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHH---HHHHHHH------------------------HTCCEEEEEECHHHHHH-TTEE-
T ss_pred HhhcCCCEEEEEecCCChHHHHH---HHHHHHh------------------------cCCCEEEEEECccchhh-hhHH-
Confidence 3 79999999999998665443 3333433 26799999999998543 2221
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 189 SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 189 ~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+..++++.++++++++||++|.|++++|+.|.+.+..
T Consensus 132 ~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 132 IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 23467788889999999999999999999999877653
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=2.4e-18 Score=159.60 Aligned_cols=150 Identities=17% Similarity=0.059 Sum_probs=115.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc------cchhhc--c
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT------LAPMYY--R 112 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~------l~~~~~--~ 112 (373)
.++++++|. |||||+++|++..+... +++.+.....+.+++.. +.+|||||+..+.. +...|+ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 468899997 99999999999877443 55556666677777754 88999999988876 566666 6
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHH
Q psy18160 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGE 192 (373)
Q Consensus 113 ~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~ 192 (373)
++|++++|+|+++.+ ....|...+.. ...+|+++|+||+|+.+. +.+.. +..
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~-----------------------~~~~p~ilv~NK~Dl~~~-~~~~~-~~~ 132 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFE-----------------------MEVKNIILVLNKFDLLKK-KGAKI-DIK 132 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHH-----------------------TTCCSEEEEEECHHHHHH-HTCCC-CHH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHh-----------------------cCCCCEEEEEEChhcCcc-cccHH-HHH
Confidence 899999999998854 23334444444 123899999999998543 22222 266
Q ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 193 ~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+++.++++++++||++|.|++++|+.+.+.+..
T Consensus 133 ~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 133 KMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 7888899999999999999999999999887653
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.74 E-value=1.1e-17 Score=166.88 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=97.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhhc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMYY 111 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~~ 111 (373)
.++++++|. |||||+|+|++.+.... +.+.++....+.+++ +.+.+|||+|++++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 478999997 99999999999864332 334455556777777 468999999998766443 3468
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
+.+|++++|+|++++.+++.+..+...+.. . .+.|+++|+||+|+... ..+ +.
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~---------------------l--~~~piIvV~NK~Dl~~~-~~~---~~ 363 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAA---------------------H--PAAKFLTVANKLDRAAN-ADA---LI 363 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHH---------------------C--TTSEEEEEEECTTSCTT-THH---HH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHh---------------------c--CCCCEEEEEECcCCCCc-cch---hH
Confidence 999999999999999888655444443333 1 26899999999999765 222 22
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+++.+....+++++||++|.||+++|++|.+.+.
T Consensus 364 ~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 364 RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 3454443478999999999999999999998775
No 133
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=6.4e-18 Score=159.23 Aligned_cols=150 Identities=16% Similarity=0.088 Sum_probs=104.8
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCccc--------ccccchh
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQER--------YHTLAPM 109 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e~--------~~~l~~~ 109 (373)
....+++++|. |||||+|+|++.++... ..+. +.....+..+ ...+.+|||||+.+ +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 45567888887 99999999999988643 1111 1111122223 46789999999876 3445567
Q ss_pred hccCCcEEEEEEECCCHhhHHHHHHHH-HHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 110 YYRNAQAAIIVYDITNQDTFGRAKSWV-KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
+++.+|++++|||++++.+.. ..|+ ..+.. . .++.|+++|+||+|+... +.
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~---------------------~-~~~~p~ilV~NK~Dl~~~-~~--- 134 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKP---------------------L-VGKVPILLVGNKLDAAKY-PE--- 134 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGG---------------------G-TTTSCEEEEEECGGGCSS-HH---
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHh---------------------h-cCCCCEEEEEECcccCCc-hH---
Confidence 899999999999999875544 3443 33433 1 247899999999998653 11
Q ss_pred HHHHHHHHHc-C-CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 189 SEGEAYAEEN-G-LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 189 ~e~~~~~~~~-~-~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
+..+.++.+ + .+++++||++|.|++++|+.|.+.+.
T Consensus 135 -~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 135 -EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp -HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 022333332 3 47899999999999999999988765
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.72 E-value=6.2e-18 Score=162.41 Aligned_cols=142 Identities=16% Similarity=0.199 Sum_probs=113.1
Q ss_pred HHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC------
Q psy18160 62 QIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN------ 125 (373)
Q Consensus 62 ~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~------ 125 (373)
.|+....|.+. |+|... ..+.++ .+.+++|||+||++++.+|..|+++++++|||||+++
T Consensus 159 ~ri~~~~Y~PT~~Dil~~~~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ 234 (353)
T 1cip_A 159 DRIAQPNYIPTQQDVLRTRVKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLA 234 (353)
T ss_dssp HHHTSTTCCCCHHHHHTCCCCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEET
T ss_pred HHHhcCCCCCCccccccccCceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccccccc
Confidence 55666666553 677653 456665 4789999999999999999999999999999999999
Q ss_pred ----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------cccC
Q psy18160 126 ----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------RCVE 187 (373)
Q Consensus 126 ----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~~v~ 187 (373)
..++++...|+..+... ....++|++|||||+|+.... ..++
T Consensus 235 ed~~~nr~~e~~~~~~~i~~~--------------------~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~ 294 (353)
T 1cip_A 235 EDEEMNRMHESMKLFDSICNN--------------------KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNT 294 (353)
T ss_dssp TEEEEEHHHHHHHHHHHHHTC--------------------GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSC
T ss_pred ccchhhhHHHHHHHHHHHHcC--------------------ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCC
Confidence 46788888888887651 123579999999999985321 1367
Q ss_pred HHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 188 YSEGEAYAE-----------ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 188 ~~e~~~~~~-----------~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.+++.+++. ..++.+++|||+++.||+++|.++++.+.+.
T Consensus 295 ~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 295 YEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 888888887 3567899999999999999999999988653
No 135
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=1.5e-17 Score=161.62 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=110.3
Q ss_pred HHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC------
Q psy18160 62 QIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN------ 125 (373)
Q Consensus 62 ~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~------ 125 (373)
.|+....+.+. |+|.++ +.+.+++ +.++||||+||++|+.+|..|+++++++|||||+++
T Consensus 183 ~ri~~~~Y~PT~~Dil~~r~~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ 258 (402)
T 1azs_C 183 DVIKQDDYVPSDQDLLRCRVLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258 (402)
T ss_dssp HHHTCTTCCCCHHHHHHCCCCCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCT
T ss_pred HHhhccccCCccccccccccceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccc
Confidence 44455555554 777765 4666665 789999999999999999999999999999999999
Q ss_pred ----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc---c------------
Q psy18160 126 ----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC---V------------ 186 (373)
Q Consensus 126 ----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~---v------------ 186 (373)
..+|+++..|+..+... ....++|++|||||+|+... +. +
T Consensus 259 ed~~~ns~~e~~~~~~~i~~~--------------------~~~~~~piiLvgNK~DL~~~-ki~~~~~~l~~~fp~y~~ 317 (402)
T 1azs_C 259 EDNQTNRLQEALNLFKSIWNN--------------------RWLRTISVILFLNKQDLLAE-KVLAGKSKIEDYFPEFAR 317 (402)
T ss_dssp TTSCSBHHHHHHHHHHHHHTC--------------------TTCSSCCEEEEEECHHHHHH-HHHHCSSCGGGTCGGGGT
T ss_pred cccccchHHHHHHHHHHHHhc--------------------ccCCCCeEEEEEEChhhhhh-hhcccccchhhccccccc
Confidence 88999999999888761 12367899999999998543 21 1
Q ss_pred ---------------CHHHHHHHH-----HH--------cCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 187 ---------------EYSEGEAYA-----EE--------NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 187 ---------------~~~e~~~~~-----~~--------~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+.+++..|+ +. .++.+++|||+++.||+++|..+.+.+.+..
T Consensus 318 ~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 318 YTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp CCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 135566653 22 2456789999999999999999988876543
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.71 E-value=8.9e-18 Score=158.32 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=82.5
Q ss_pred cccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160 100 QERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178 (373)
Q Consensus 100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D 178 (373)
++++..+.+.+++++|++++|||++++. ++..+.+|+..+.. .++|++||+||+|
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------------------------~~~~~ilV~NK~D 121 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------------------------FKVEPVIVFNKID 121 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH------------------------TTCEEEEEECCGG
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh------------------------CCCCEEEEEEccc
Confidence 7899999999999999999999999986 99999999987765 5789999999999
Q ss_pred CCCCCcccC-HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q psy18160 179 LPTSRRCVE-YSEGEAYAEENGLLFMETSAKTAMNVNEIFVEI 220 (373)
Q Consensus 179 l~~~~~~v~-~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L 220 (373)
+.+. +.++ .++..++++..+++++++||+++.|++++|..+
T Consensus 122 L~~~-~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 122 LLNE-EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp GCCH-HHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHT
T ss_pred CCCc-cccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhc
Confidence 9754 2223 456677788889999999999999999999765
No 137
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.71 E-value=1.1e-17 Score=160.66 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=108.2
Q ss_pred HHHhhhCcCcCc----------ceeeeEEEEEEEECC----EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC--
Q psy18160 61 TQIVINVVFYPY----------LFSAAFITQTVCLDD----VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT-- 124 (373)
Q Consensus 61 l~rl~~~~~~~~----------Tig~~~~~~~i~~~~----~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~-- 124 (373)
+.|+....+.+. |.|... ..+.+++ +.+.+++|||+||++|+.+|..|+++++++|+|||++
T Consensus 142 ~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e--~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~y 219 (354)
T 2xtz_A 142 LKRLSDINYIPTKEDVLYARVRTTGVVE--IQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEY 219 (354)
T ss_dssp HHHHHSTTCCCCHHHHHHCCCCCCSEEE--EEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGT
T ss_pred HHHHhcCCCCCCchheeeecccccceee--EEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccc
Confidence 455666666654 455442 3444565 6789999999999999999999999999999999998
Q ss_pred --------CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc--c--------
Q psy18160 125 --------NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC--V-------- 186 (373)
Q Consensus 125 --------~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~--v-------- 186 (373)
+..+|+++..|+..+... ...+++|++|||||+|+..+ +. +
T Consensus 220 dq~l~e~~~~~s~~~~~~~~~~i~~~--------------------~~~~~~piiLvgNK~DL~~~-k~~~v~l~~~~~f 278 (354)
T 2xtz_A 220 DQTLFEDEQKNRMMETKELFDWVLKQ--------------------PCFEKTSFMLFLNKFDIFEK-KVLDVPLNVCEWF 278 (354)
T ss_dssp TCBCSSCTTSBHHHHHHHHHHHHHTC--------------------GGGSSCEEEEEEECHHHHHH-HTTTSCGGGSGGG
T ss_pred ccccccccchhHHHHHHHHHHHHHhc--------------------cccCCCeEEEEEECcchhhh-hcccccccccccc
Confidence 788999999998887651 12357899999999998532 11 1
Q ss_pred -----------CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 187 -----------EYSEGEAYAEE----------------NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 187 -----------~~~e~~~~~~~----------------~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
+.+++.+++.. ..+.+++|||+++.||+++|.++.+.+.+..
T Consensus 279 p~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~ 347 (354)
T 2xtz_A 279 RDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRN 347 (354)
T ss_dssp TTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHH
Confidence 24677777543 1244689999999999999999998886543
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.71 E-value=6.4e-17 Score=165.16 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=111.0
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCc--Cc---------C----c-ceeeeEEEEEEEE-----CCEEEEEEEEeCCCcc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVV--FY---------P----Y-LFSAAFITQTVCL-----DDVTIRFEIWDTAGQE 101 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~--~~---------~----~-Tig~~~~~~~i~~-----~~~~v~l~i~Dt~G~e 101 (373)
...+++++|. |||||+++|+... +. + . +.|.++....+.+ ++..+.++||||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 3457788886 9999999998631 11 1 0 3344443333333 5667899999999999
Q ss_pred cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
+|...+..+++.+|++|+|+|+++..+++....|..... .++|+++|+||+|+..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-------------------------~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-------------------------MDLEVVPVLNKIDLPA 137 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-------------------------TTCEEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-------------------------CCCCEEEeeeccCccc
Confidence 999999999999999999999999877777776765443 3679999999999976
Q ss_pred CCcccCHHHHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 182 SRRCVEYSEGEAYAEENGLL---FMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 182 ~~~~v~~~e~~~~~~~~~~~---~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
. + ..+...++.+.+++. ++++||++|.||+++|+.|.+.+..
T Consensus 138 a-~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 138 A-D--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp C-C--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred c-c--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 4 1 233345666777764 9999999999999999999988864
No 139
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.71 E-value=4.6e-17 Score=162.46 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=110.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcc-cccc--------cchhhc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQE-RYHT--------LAPMYY 111 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e-~~~~--------l~~~~~ 111 (373)
++++++|. |||||+|+|++.++... +...++....+.+++. .+.+|||+|+. ++.. ....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 78999998 99999999999865422 3334555567777774 47899999988 6543 234678
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
+.+|++|+|+|++++.++++.. +++.+ .+.|+++|+||+|+.+. ++.+++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l--------------------------~~~piivV~NK~DL~~~---~~~~~~ 371 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI--------------------------KNKRYLVVINKVDVVEK---INEEEI 371 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH--------------------------TTSSEEEEEEECSSCCC---CCHHHH
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh--------------------------cCCCEEEEEECcccccc---cCHHHH
Confidence 8999999999999988876543 22211 36799999999999653 445555
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+++. .+.+++++||++|.||+++|++|.+.+..
T Consensus 372 ~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 372 KNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp HHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred HHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 55443 34689999999999999999999987763
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.70 E-value=5.1e-17 Score=156.68 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=114.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccc---------cch
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHT---------LAP 108 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~---------l~~ 108 (373)
..++++++|. |||||++++++..+... |.+.. ...+..++ ..+.+|||+|...+.. ...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN--VGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAIL 241 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE--EEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee--EEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHH
Confidence 4568888887 99999999998875432 33322 23343443 5689999999865421 112
Q ss_pred hhccCCcEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 109 MYYRNAQAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 109 ~~~~~ad~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
.+...+|++++|+|+++.. +++...+|+..+... . .+.|+++|+||+|+... .
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~---------------------~-~~~piilV~NK~Dl~~~-~-- 296 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE---------------------F-KDLPFLVVINKIDVADE-E-- 296 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH---------------------T-TTSCEEEEECCTTTCCH-H--
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHh---------------------c-CCCCEEEEEECcccCCh-H--
Confidence 3445799999999999877 788888888887661 1 27899999999999653 2
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 187 EYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 187 ~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
..+++.++++..+++++++||++|+||+++|++|.+.+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 297 NIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp HHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 23556677778889999999999999999999999887543
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.69 E-value=3.5e-16 Score=153.23 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=112.2
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEE---EEE---------EE---CCEEEEEEEEeCCC
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFIT---QTV---------CL---DDVTIRFEIWDTAG 99 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~---~~i---------~~---~~~~v~l~i~Dt~G 99 (373)
....++++++|. |||||+++|++...... +++..... ..+ .. ......+.+|||+|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 445689999997 99999999998544332 11100000 000 00 11236799999999
Q ss_pred cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
+++|......+++.+|++++|+|+++..++....+|+..+... ...|+++|+||+|+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-----------------------~~~~iivviNK~Dl 141 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-----------------------GVKNLIIVQNKVDV 141 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-----------------------TCCCEEEEEECGGG
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-----------------------CCCCEEEEEECccc
Confidence 9999999999999999999999999887777777777666541 22489999999999
Q ss_pred CCCCcc-cCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 180 PTSRRC-VEYSEGEAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 180 ~~~~~~-v~~~e~~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+.... ...++..++.+.. +++++++||++|.||+++++.|.+.+..
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 753110 1112233333222 5689999999999999999999987754
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.69 E-value=2.9e-17 Score=155.75 Aligned_cols=142 Identities=14% Similarity=0.167 Sum_probs=111.3
Q ss_pred HHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC-------
Q psy18160 62 QIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT------- 124 (373)
Q Consensus 62 ~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~------- 124 (373)
.|+....|.+. |+|.. ...+.+++ +.+++|||+||++++.+|..|+++++++|+|||++
T Consensus 133 ~Ri~~~~Y~PT~~Dilr~r~~TiGi~--~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~ 208 (327)
T 3ohm_A 133 DRVADPSYLPTQQDVLRVRVPTTGII--EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV 208 (327)
T ss_dssp HHHHSTTCCCCHHHHTTCCCCCCSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCS
T ss_pred HHHhccCCCccccchhcccCceeeEE--EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccc
Confidence 46666677665 77754 34555554 78999999999999999999999999999999665
Q ss_pred ---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC---------------ccc
Q psy18160 125 ---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR---------------RCV 186 (373)
Q Consensus 125 ---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~---------------~~v 186 (373)
+..++++...|+..+... ....++|++|+|||+|+.... +.+
T Consensus 209 d~~~~nr~~es~~~~~~i~~~--------------------~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~ 268 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIITY--------------------PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQR 268 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHTS--------------------GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSS
T ss_pred ccccHhHHHHHHHHHHHHhhh--------------------hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCC
Confidence 567788877777777551 223579999999999986431 146
Q ss_pred CHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 187 EYSEGEAYAE----------ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 187 ~~~e~~~~~~----------~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+.+++.++.. ..++.++++||+++.||+++|..+.+.+.++
T Consensus 269 ~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 269 DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp CHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 7888888843 3556789999999999999999999988754
No 143
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.69 E-value=4.7e-17 Score=156.82 Aligned_cols=144 Identities=12% Similarity=0.117 Sum_probs=107.8
Q ss_pred HHHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC-----
Q psy18160 61 TQIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN----- 125 (373)
Q Consensus 61 l~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~----- 125 (373)
+.|+....|.+. |+|.+. ..+.+++ +.+++|||+||++++.+|..|+++++++|||||+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l 241 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence 667777777765 677664 4566664 789999999999999999999999999999999999
Q ss_pred -----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC---------------cc
Q psy18160 126 -----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR---------------RC 185 (373)
Q Consensus 126 -----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~---------------~~ 185 (373)
..+|++...|+..+... ....++|++|++||+|+..+. ..
T Consensus 242 ~ed~~~n~~~es~~~~~~i~~~--------------------~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~ 301 (362)
T 1zcb_A 242 MEDRQTNRLTESLNIFETIVNN--------------------RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDP 301 (362)
T ss_dssp TTEEEEEHHHHHHHHHHHHHTC--------------------GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCT
T ss_pred cccccccHHHHHHHHHHHHhcc--------------------hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCC
Confidence 77999999898887651 123578999999999985321 12
Q ss_pred cCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHcchhh
Q psy18160 186 VEYSEGEAYAE-----------ENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228 (373)
Q Consensus 186 v~~~e~~~~~~-----------~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~ 228 (373)
++.+++.+++. ..++.+++|||+++.||+++|.++.+.+.+..
T Consensus 302 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 302 HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp TCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 67788887762 34578999999999999999999998887543
No 144
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.69 E-value=3.1e-17 Score=156.99 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=114.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcc----cccccchhhccC---
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQE----RYHTLAPMYYRN--- 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e----~~~~l~~~~~~~--- 113 (373)
+++++|. |||||++++++.++... |..... ..+.+++. ..+.||||+|+. ++..+...|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 5778886 99999999998764322 444443 24555542 368899999964 345566667654
Q ss_pred CcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHH
Q psy18160 114 AQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 114 ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e 190 (373)
+|++|+|+|+++ +.+++.+..|+.++..+. ....+.|++||+||+|+... .+.
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~-------------------~~l~~~p~ilV~NK~Dl~~~-----~e~ 292 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN-------------------LRLTERPQIIVANKMDMPEA-----AEN 292 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC-------------------SSTTTSCBCBEEECTTSTTH-----HHH
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhh-------------------hhhcCCCEEEEEECccCCCC-----HHH
Confidence 999999999998 789999999998887721 11257899999999998653 244
Q ss_pred HHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 191 GEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 191 ~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..++++.+. .+++++||+++.||+++|++|.+.+.+
T Consensus 293 ~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 293 LEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp HHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred HHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 666777776 689999999999999999999988864
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.68 E-value=1.5e-16 Score=162.29 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=112.8
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCc--CcC-------------c-ceeeeEEE--EEEEE---CCEEEEEEEEeCCCc
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVV--FYP-------------Y-LFSAAFIT--QTVCL---DDVTIRFEIWDTAGQ 100 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~--~~~-------------~-Tig~~~~~--~~i~~---~~~~v~l~i~Dt~G~ 100 (373)
+...+++++|. |||||+++|+... +.. . ..|.++.. ..+.+ ++..+.++||||+|+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34567788886 9999999998631 110 0 12222211 12222 566789999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160 101 ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180 (373)
Q Consensus 101 e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 180 (373)
++|...+..+++.+|++|+|+|+++..+++....|..... .++|+++|+||+|+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-------------------------~~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-------------------------QDLVIIPVINKIDLP 138 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-------------------------TTCEEEEEEECTTST
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-------------------------CCCCEEEEEeccCcc
Confidence 9999888899999999999999999888877777755432 368999999999997
Q ss_pred CCCcccCHHHHHHHHHHcCC---eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 181 TSRRCVEYSEGEAYAEENGL---LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 181 ~~~~~v~~~e~~~~~~~~~~---~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.. + ..+...++.+.+++ +++++||++|.||+++|+.|++.+..
T Consensus 139 ~a-~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 139 SA-D--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp TC-C--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cc-C--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 64 1 22334556666676 48999999999999999999988864
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=5.7e-16 Score=151.98 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=105.4
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEEE-------------C--C----EEEEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVCL-------------D--D----VTIRFEI 94 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~~-------------~--~----~~v~l~i 94 (373)
...++++++|. |||||+++|.+. .+... |++..|....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 34688999997 999999999854 23222 6666665444432 1 1 2378999
Q ss_pred EeCCCcccccccchhhccCCcEEEEEEECCC----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeE
Q psy18160 95 WDTAGQERYHTLAPMYYRNAQAAIIVYDITN----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVI 170 (373)
Q Consensus 95 ~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 170 (373)
|||+|+++|.......+..+|++|+|+|+++ +.+++.+..| .. . ...|+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~---------------------l--~~~~i 138 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EI---------------------L--GIDKI 138 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HH---------------------T--TCCCE
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HH---------------------c--CCCeE
Confidence 9999999988777777888999999999985 4455544322 22 1 22479
Q ss_pred EEEEeCCCCCCCCc-ccCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 171 ALAGNKADLPTSRR-CVEYSEGEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 171 ilVgnK~Dl~~~~~-~v~~~e~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++|+||+|+.+..+ ....+++.++++. .+++++++||++|.||+++++.|.+.+..
T Consensus 139 ivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 139 IIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp EEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 99999999976422 2345566777665 35789999999999999999999987753
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.68 E-value=1.4e-16 Score=153.74 Aligned_cols=154 Identities=13% Similarity=0.028 Sum_probs=104.7
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcc---------cccccchhhccC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQE---------RYHTLAPMYYRN 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e---------~~~~l~~~~~~~ 113 (373)
.++++|. |||||+|++++..+... ....++....+.+++. .+.+|||+|.- .|.... ..++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 4778886 99999999999876432 1122344567888874 57899999972 232222 24789
Q ss_pred CcEEEEEEECCCHh--hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 114 AQAAIIVYDITNQD--TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 114 ad~iilv~D~~~~~--Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
+|++++|+|++++. .++.+..|...+.. ....+.|+++|+||+|+.+.......+.+
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~---------------------l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 316 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILRE---------------------IGVSGKPILVTLNKIDKINGDLYKKLDLV 316 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHH---------------------HTCCSCCEEEEEECGGGCCSCHHHHHHHH
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHH---------------------hCcCCCCEEEEEECCCCCCchHHHHHHHH
Confidence 99999999999876 56666666555544 23457899999999998653100111233
Q ss_pred HHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 192 EAYAEEN---GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 192 ~~~~~~~---~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..+++.+ +.+++++||+++.|++++++.|.+.+..
T Consensus 317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 3445555 2468999999999999999999887653
No 148
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=1e-15 Score=151.60 Aligned_cols=155 Identities=18% Similarity=0.138 Sum_probs=105.4
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc----------
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA---------- 107 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~---------- 107 (373)
...++++++|. |||||+|++++..+... +.+.+.....+.++|.. +.+|||+|+.++....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHH
Confidence 35689999997 99999999999875322 22234445667788864 6899999985433221
Q ss_pred --hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160 108 --PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185 (373)
Q Consensus 108 --~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~ 185 (373)
..+++.+|++++|+|+++..++++. ++...+.. .+.|+++|+||+|+.+. +.
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~------------------------~~~~~ilv~NK~Dl~~~-~~ 309 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER------------------------RGRASVVVFNKWDLVVH-RE 309 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH------------------------TTCEEEEEEECGGGSTT-GG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH------------------------cCCCEEEEEECccCCCc-hh
Confidence 2467889999999999987666542 23333333 46899999999999764 33
Q ss_pred cCHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 186 VEYSEGEA-YAEE----NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 186 v~~~e~~~-~~~~----~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
...++..+ +.+. .+.+++++||++|.||+++|+.+.+.+...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 310 KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 44444332 2232 357899999999999999999998876543
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=7.7e-16 Score=152.38 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=101.0
Q ss_pred CCCCCcEEEEEEcC---ChhHHHHHhhhCcC-------------------------------cCc---ceeeeEEEEEEE
Q psy18160 42 KRQSDCMAQIWLKD---RVDCMTQIVINVVF-------------------------------YPY---LFSAAFITQTVC 84 (373)
Q Consensus 42 ~~~~~~i~ivvlG~---GKTsLl~rl~~~~~-------------------------------~~~---Tig~~~~~~~i~ 84 (373)
.+....++++++|. |||||+++|+...- ... .++.+.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34556789999997 99999999954311 111 223333333444
Q ss_pred ECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhh---HH---HHHHHHHHHHhhCCCCCCcccccchhHH
Q psy18160 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDT---FG---RAKSWVKELQRMAPPNIDTFGRAKSWVK 158 (373)
Q Consensus 85 ~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~S---f~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~ 158 (373)
.+ ...+.||||||+++|......+++.+|++|+|+|+++... |+ ...+.+..+..
T Consensus 92 ~~--~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----------------- 152 (439)
T 3j2k_7 92 TE--KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----------------- 152 (439)
T ss_pred cC--CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-----------------
Confidence 44 3578999999999999888889999999999999988532 21 11122222222
Q ss_pred hhhhcCCCCCe-EEEEEeCCCCCCCC-----cccCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q psy18160 159 ELQRMAPPNIV-IALAGNKADLPTSR-----RCVEYSEGEAYAEENG------LLFMETSAKTAMNVNEIFV 218 (373)
Q Consensus 159 ~~~~~~~~~~p-iilVgnK~Dl~~~~-----~~v~~~e~~~~~~~~~------~~~~evSak~~~gI~~lf~ 218 (373)
.++| +++|+||+|+.... .....++...+++.++ ++++++||++|.|++++++
T Consensus 153 -------~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 -------AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred -------cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2455 99999999985420 1112234455665555 4699999999999999654
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=1.3e-16 Score=158.50 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=98.4
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhhc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMYY 111 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~~ 111 (373)
.++++++|. |||||+|+|++.++... +.+.++....+.+++. .+.+|||+|..++.... ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 468999997 99999999998865432 3333444456667774 46899999986654433 3367
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHH
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEG 191 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~ 191 (373)
+.+|++++|+|++++.++.. ..|+..+ ...|+++|+||+|+... +.+. +.
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l--------------------------~~~piivV~NK~Dl~~~-~~~~--~~ 351 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV--------------------------KHRPLILVMNKIDLVEK-QLIT--SL 351 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH--------------------------TTSCEEEEEECTTSSCG-GGST--TC
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc--------------------------cCCcEEEEEECCCCCcc-hhhH--HH
Confidence 89999999999998776654 3344333 23599999999999764 2222 11
Q ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 192 EAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 192 ~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.++. .+.+++++||++|.|++++|+.|.+.+...
T Consensus 352 ~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 352 EYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred HHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 1111 356899999999999999999999887643
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.64 E-value=6.1e-16 Score=154.77 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=107.5
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCc----C---cCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhh
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVV----F---YPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMY 110 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~----~---~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~ 110 (373)
..++++++|. |||||+++|.+.. + ... |+...+ ..+.+++ ..+.+|||+|+++|......+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF--SAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CC--CEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce--EEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 4688999997 9999999999876 2 222 333322 3445555 568999999999998888889
Q ss_pred ccCCcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCc-cc
Q psy18160 111 YRNAQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRR-CV 186 (373)
Q Consensus 111 ~~~ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~-~v 186 (373)
++.+|++++|+|+++ +.+++.+. .+.. .++|+++|+||+|+.+..+ ..
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~------------------------~~ip~IvviNK~Dl~~~~~~~~ 145 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDH------------------------FNIPIIVVITKSDNAGTEEIKR 145 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHHH------------------------TTCCBCEEEECTTSSCHHHHHH
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHHH------------------------cCCCEEEEEECCCcccchhHHH
Confidence 999999999999988 45554433 2222 3578899999999975311 12
Q ss_pred CHHHHHHHHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 187 EYSEGEAYAEEN----GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 187 ~~~e~~~~~~~~----~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
..+++.++++.. +.+++++||++|.||+++++.|.+.+.
T Consensus 146 ~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 146 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 234455666665 578999999999999999999988764
No 152
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.64 E-value=4.1e-16 Score=146.84 Aligned_cols=152 Identities=17% Similarity=0.093 Sum_probs=105.5
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceee--eEEEEEEEECCEEEEEEEEeCCCcc---------cccccchh
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSA--AFITQTVCLDDVTIRFEIWDTAGQE---------RYHTLAPM 109 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~e---------~~~~l~~~ 109 (373)
...+++++|. |||||+|++++..+... ..+. +.....+..++ ..+.+|||+|++ .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3457888887 99999999999876533 1111 11112233333 568899999987 34455667
Q ss_pred hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
+++.+|++++|+|.++ +....+|+..... ..+.|+++|+||+|+... +....+
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-----------------------~~~~P~ilvlNK~D~~~~-~~~~~~ 137 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-----------------------EGKAPVILAVNKVDNVQE-KADLLP 137 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-----------------------SSSSCEEEEEESTTTCCC-HHHHHH
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-----------------------hcCCCEEEEEECcccCcc-HHHHHH
Confidence 8899999999999976 3333334333222 146899999999998652 222234
Q ss_pred HHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 190 EGEAYAEENGL-LFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 190 e~~~~~~~~~~-~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
...++++.+++ .++++||+++.|++++++.+...+..
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45556666676 79999999999999999999887753
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.64 E-value=2.2e-15 Score=147.95 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=108.9
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC---cCcCc-----ceeeeEEEEEEEEC---------------C----EEEEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV---VFYPY-----LFSAAFITQTVCLD---------------D----VTIRFEI 94 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~---~~~~~-----Tig~~~~~~~i~~~---------------~----~~v~l~i 94 (373)
...++++++|. |||||+++|++. .+... |+...+....+... + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 45678889997 999999999853 23222 66666654444221 1 1378999
Q ss_pred EeCCCcccccccchhhccCCcEEEEEEECCC----HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeE
Q psy18160 95 WDTAGQERYHTLAPMYYRNAQAAIIVYDITN----QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVI 170 (373)
Q Consensus 95 ~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~----~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 170 (373)
|||+|+++|.......+..+|++|+|+|+++ +.+++.+..| .. . ...|+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~---------------------~--~~~~i 140 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QI---------------------I--GQKNI 140 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HH---------------------H--TCCCE
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HH---------------------c--CCCcE
Confidence 9999999988777777788999999999985 3455544322 22 0 13479
Q ss_pred EEEEeCCCCCCCCc-ccCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 171 ALAGNKADLPTSRR-CVEYSEGEAYAEE---NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 171 ilVgnK~Dl~~~~~-~v~~~e~~~~~~~---~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
++|+||+|+.+... ....+++.++++. .+++++++||++|.||+++++.|.+.+..
T Consensus 141 ivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 141 IIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 99999999976311 1223445555554 35789999999999999999999987753
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.64 E-value=2.8e-16 Score=157.40 Aligned_cols=147 Identities=15% Similarity=0.052 Sum_probs=96.3
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcC--cC-----------------------------c-ceeeeEEEEEEEECCEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVF--YP-----------------------------Y-LFSAAFITQTVCLDDVT 89 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~--~~-----------------------------~-Tig~~~~~~~i~~~~~~ 89 (373)
...++++++|. |||||+++|+.... .. . ..|.++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 45689999998 99999999986511 10 0 12333322333344445
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHH------HHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRA------KSWVKELQRMAPPNIDTFGRAKSWVKELQRM 163 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i------~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
+.+.||||+|+++|......+++.+|++|+|+|+++..++..+ .+.+..+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---------------------- 168 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---------------------- 168 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH----------------------
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH----------------------
Confidence 6799999999999999999999999999999999987654321 112222222
Q ss_pred CCCCCeEEEEEeCCCCCCCCcccCHHHH----HHHHHHcC-----CeEEEEcCCCCCCHHH
Q psy18160 164 APPNIVIALAGNKADLPTSRRCVEYSEG----EAYAEENG-----LLFMETSAKTAMNVNE 215 (373)
Q Consensus 164 ~~~~~piilVgnK~Dl~~~~~~v~~~e~----~~~~~~~~-----~~~~evSak~~~gI~~ 215 (373)
....|++||+||+|+.+. +....++. .++++..+ ++++++||++|.||++
T Consensus 169 -~~~~~iIvviNK~Dl~~~-~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 169 -LGIHNLIIAMNKMDNVDW-SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp -TTCCCEEEEEECGGGGTT-CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred -cCCCcEEEEEECcCcccc-hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 123469999999999763 22333333 33444443 5799999999999975
No 155
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.63 E-value=1.1e-15 Score=140.46 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=103.1
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCc-CcCc---c-eeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVV-FYPY---L-FSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA-------- 107 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~-~~~~---T-ig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~-------- 107 (373)
....++++++|. |||||+++|++.. +... + +..+.....+..++. .+.||||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHH
Confidence 445689999997 9999999999887 3322 2 334444455566664 58899999987654322
Q ss_pred ---hhhccCCcEEEEEEECCCHhhH-HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160 108 ---PMYYRNAQAAIIVYDITNQDTF-GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR 183 (373)
Q Consensus 108 ---~~~~~~ad~iilv~D~~~~~Sf-~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~ 183 (373)
..+++.+|++++|+|+++.... ..+.+|+..+.. .....++++++.||+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~i~vv~nK~Dl~~~- 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG---------------------EDAMGHTIVLFTHKEDLNGG- 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC---------------------GGGGGGEEEEEECGGGGTTC-
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC---------------------chhhccEEEEEEcccccCCc-
Confidence 2367899999999999862222 223333333321 01123345555559999743
Q ss_pred cccCH-------HHHHHHHHHcCCe---E--EEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 184 RCVEY-------SEGEAYAEENGLL---F--METSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 184 ~~v~~-------~e~~~~~~~~~~~---~--~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
.+.. +++.++++..+.. + +++||+++.|++++|+.|.+.+...
T Consensus 155 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 155 -SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp -CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 1222 3355566666643 2 7899999999999999999887643
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.63 E-value=2.5e-16 Score=154.34 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=110.7
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC--------cCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV--------VFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~--------~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
...++++++|. |||||+++|++. .|... +.|.++....+.++.....+.||||+|+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35688999997 999999999973 22210 2333322233444444467899999999999
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS 182 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~ 182 (373)
......+++.+|++|+|+|+++.... ...+|+..+.. .++| +++|+||+|+...
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~------------------------~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ------------------------VGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH------------------------TTCCCEEEEEECGGGCCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH------------------------cCCCEEEEEEECccccCc
Confidence 88888899999999999999886543 33455555544 3567 8999999999742
Q ss_pred Ccc--cCHHHHHHHHHHcC-----CeEEEEcCCCCCC------------------HHHHHHHHHHHcc
Q psy18160 183 RRC--VEYSEGEAYAEENG-----LLFMETSAKTAMN------------------VNEIFVEIAKKLP 225 (373)
Q Consensus 183 ~~~--v~~~e~~~~~~~~~-----~~~~evSak~~~g------------------I~~lf~~L~~~i~ 225 (373)
... ...+++.++++.++ .+++++||++|.| ++++++.|...+.
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 111 11235666777766 5899999999987 7888888877665
No 157
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.63 E-value=1.6e-16 Score=151.11 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=108.1
Q ss_pred HHhhhCcCcCc----------ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECC-------
Q psy18160 62 QIVINVVFYPY----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDIT------- 124 (373)
Q Consensus 62 ~rl~~~~~~~~----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~------- 124 (373)
.|+....|.+. |+|... ..+.++ .+.+++|||+||++++.+|..|+++++++|||||++
T Consensus 127 ~Ri~~~~Y~PT~~Dil~~~~~TiGi~~--~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~ 202 (340)
T 4fid_A 127 KRIAMEDYVPTEEDLIHNRTKTTGIHE--YDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLY 202 (340)
T ss_dssp HHHSSTTCCCCHHHHHHSCCCCCSCEE--EEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC
T ss_pred HHHhcccCCccccceeecccceeeeEE--EEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccc
Confidence 44555566554 777654 344444 478999999999999999999999999999999998
Q ss_pred ---CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC--------------cccC
Q psy18160 125 ---NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--------------RCVE 187 (373)
Q Consensus 125 ---~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--------------~~v~ 187 (373)
+..+|++...|+..+... ....++|++|+|||+|+.... ....
T Consensus 203 e~~~~nr~~es~~~~~~i~~~--------------------~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~ 262 (340)
T 4fid_A 203 EDGNTSRLTESIAVFKDIMTN--------------------EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDN 262 (340)
T ss_dssp --CCSBHHHHHHHHHHHHHHC--------------------GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTC
T ss_pred cccccchHHHHHHHHHHHhhh--------------------hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCC
Confidence 678899888888887651 223678999999999985420 1124
Q ss_pred HHHHHHHHHH-c--------------------------CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 188 YSEGEAYAEE-N--------------------------GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 188 ~~e~~~~~~~-~--------------------------~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.+++.+++.. . .+.++++||++..||+.+|..+.+.+.+
T Consensus 263 ~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 263 AVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 6666555432 2 3668999999999999999999998876
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.62 E-value=8.3e-16 Score=134.18 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=86.2
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccC----Cc
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRN----AQ 115 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~----ad 115 (373)
...++++++|. |||||+++|++..+... +.... +..+...+.+.+|||+|++.+...+..+++. +|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-----SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCc-----eeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 45578999997 99999999999987653 11100 0111134568999999999998888888876 89
Q ss_pred EEEEEEECC-CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 116 AAIIVYDIT-NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 116 ~iilv~D~~-~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
++++|||++ ++.+|..+..|+..+.... ......++|+++|+||+|+...
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSIT-----------------ESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHH-----------------HHHSTTCCCEEEEEECTTSTTC
T ss_pred EEEEEEECCCCchhHHHHHHHHHHHHhhh-----------------hhccccCCCEEEEEEchHhcCC
Confidence 999999999 8999999998887776510 0002357899999999999765
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.62 E-value=1.9e-17 Score=166.77 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=106.5
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEE
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVY 121 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~ 121 (373)
.+++++|. |||||+++|.+..+... +++.++....+.+++ ...+.||||||++.|..++..+++.+|++++|+
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVV 83 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVV 83 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEEE
Confidence 57888887 99999999998776544 333333223333322 235889999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHH---HHHc
Q psy18160 122 DITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY---AEEN 198 (373)
Q Consensus 122 D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~---~~~~ 198 (373)
|+++....+....| ..+.. .++|++||+||+|+.+.......++..++ +..+
T Consensus 84 Da~dg~~~qt~e~l-~~~~~------------------------~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~ 138 (537)
T 3izy_P 84 AADDGVMKQTVESI-QHAKD------------------------AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDY 138 (537)
T ss_dssp BSSSCCCHHHHHHH-HHHHT------------------------TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCS
T ss_pred ECCCCccHHHHHHH-HHHHH------------------------cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhc
Confidence 99986655444322 22222 46799999999999753221111222211 1111
Q ss_pred --CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 199 --GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 199 --~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++++++||++|.|++++|+.|...+.
T Consensus 139 ~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 139 GGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 247999999999999999999987654
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.62 E-value=9.2e-16 Score=154.79 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=78.3
Q ss_pred CcEEEEEEcC---ChhHHHHHhhh------------------CcCcCc-----ceeeeE--EEEEEEECCEEEEEEEEeC
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVIN------------------VVFYPY-----LFSAAF--ITQTVCLDDVTIRFEIWDT 97 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~------------------~~~~~~-----Tig~~~--~~~~i~~~~~~v~l~i~Dt 97 (373)
...+++++|. |||||+++|+. ..+... ..|.+. ....+.+++ +.+.||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 4567888886 99999999961 111110 111111 122334444 67899999
Q ss_pred CCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCC
Q psy18160 98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177 (373)
Q Consensus 98 ~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~ 177 (373)
||+++|...+..+++.+|++|+|+|+++..+.....-| ..+.. .++|+++|+||+
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~------------------------~~iPiivviNK~ 144 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL------------------------RHTPIMTFINKM 144 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT------------------------TTCCEEEEEECT
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH------------------------cCCCEEEEEeCC
Confidence 99999999999999999999999999987776665544 33333 468999999999
Q ss_pred CCCCC
Q psy18160 178 DLPTS 182 (373)
Q Consensus 178 Dl~~~ 182 (373)
|+...
T Consensus 145 Dl~~~ 149 (528)
T 3tr5_A 145 DRDTR 149 (528)
T ss_dssp TSCCS
T ss_pred CCccc
Confidence 99653
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.61 E-value=9.1e-16 Score=149.99 Aligned_cols=154 Identities=13% Similarity=0.073 Sum_probs=107.6
Q ss_pred cEEEEEEcC---ChhHHHHHhhhC-------cCcC---------c-ceeeeEEEEEEEECCEEEEEEEEeCCCccccccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINV-------VFYP---------Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTL 106 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~-------~~~~---------~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l 106 (373)
.++++++|. |||||+++|++. .|.. . ..|.+.....+.++.....+.||||+|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 478999997 999999999974 1211 0 1222222223334434467889999999999888
Q ss_pred chhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCCCcc
Q psy18160 107 APMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTSRRC 185 (373)
Q Consensus 107 ~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~ 185 (373)
...+++.+|++|+|+|+++....+..+ ++..+.. .++| +++|+||+|+.+....
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~------------------------~~vp~iivviNK~Dl~~~~~~ 137 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ------------------------IGVEHVVVYVNKADAVQDSEM 137 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH------------------------TTCCCEEEEEECGGGCSCHHH
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH------------------------cCCCeEEEEEECcccCCCHHH
Confidence 888899999999999999854333322 2233333 3567 7899999999753111
Q ss_pred --cCHHHHHHHHHHcC-----CeEEEEcCCCCCC----------HHHHHHHHHHHcc
Q psy18160 186 --VEYSEGEAYAEENG-----LLFMETSAKTAMN----------VNEIFVEIAKKLP 225 (373)
Q Consensus 186 --v~~~e~~~~~~~~~-----~~~~evSak~~~g----------I~~lf~~L~~~i~ 225 (373)
...+++.++++.++ ++++++||++|.| ++++++.|.+.+.
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 12345667777776 5899999999765 8999999988775
No 162
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=4.6e-15 Score=134.66 Aligned_cols=162 Identities=7% Similarity=0.059 Sum_probs=104.9
Q ss_pred CCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCc-----------c
Q psy18160 41 GKRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQ-----------E 101 (373)
Q Consensus 41 ~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-----------e 101 (373)
+.+....++++++|. |||||+|+|++..+... +++.++....+.+++. .+.||||||. +
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~ 100 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSK 100 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHH
Confidence 334556789999997 99999999999887554 2333444556666664 5789999994 3
Q ss_pred cccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 102 RYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 102 ~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
++......+++++|++|+|+|+++.... ...|+..+... . ......|++||+||+|+..
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~-----------------~--~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKM-----------------F--GERARSFMILIFTRKDDLG 159 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHH-----------------H--HHHHGGGEEEEEECGGGC-
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHH-----------------h--hhhccceEEEEEeCCccCC
Confidence 4444555567789999999998754331 12233333220 0 0012358999999999865
Q ss_pred CCcccC------HHHHHHHHHHcCCeEEEEcCCCC-----CCHHHHHHHHHHHcch
Q psy18160 182 SRRCVE------YSEGEAYAEENGLLFMETSAKTA-----MNVNEIFVEIAKKLPK 226 (373)
Q Consensus 182 ~~~~v~------~~e~~~~~~~~~~~~~evSak~~-----~gI~~lf~~L~~~i~~ 226 (373)
. +.+. .+.++++++..+..|+.+++..+ .++.++|..+...+.+
T Consensus 160 ~-~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 160 D-TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 4 2222 24577888888888888887744 6899999988777654
No 163
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.6e-16 Score=153.46 Aligned_cols=153 Identities=15% Similarity=0.139 Sum_probs=90.0
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCc-CcCc-----------ceeeeEEEEEEEECCEEEEEEEEeCCCc-------cccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVV-FYPY-----------LFSAAFITQTVCLDDVTIRFEIWDTAGQ-------ERYH 104 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~-~~~~-----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-------e~~~ 104 (373)
.++++++|. |||||++++++.. +... |++.++....+..++..+.+.+|||+|+ +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 367888887 9999999976543 3211 4555554444555677789999999999 7888
Q ss_pred ccch-------hhccCCcEE-----------EEEEECCC-HhhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160 105 TLAP-------MYYRNAQAA-----------IIVYDITN-QDTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMA 164 (373)
Q Consensus 105 ~l~~-------~~~~~ad~i-----------ilv~D~~~-~~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
.++. .|+++++++ +++|++++ ..++..+. .|+..+
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l------------------------- 171 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI------------------------- 171 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-------------------------
Confidence 8876 777766554 37777765 45555554 333322
Q ss_pred CCCCeEEEEEeCCCCCCCCcccCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 165 PPNIVIALAGNKADLPTSRRCVEY--SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 165 ~~~~piilVgnK~Dl~~~~~~v~~--~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
..++|+++|+||+|+... +.+.. +++.++++.++++++++||+++.+ ++.|..+.+.+.+
T Consensus 172 ~~~~piIlV~NK~Dl~~~-~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 172 HNKVNIVPVIAKADTLTL-KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp CS-SCEEEEEECCSSSCH-HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred ccCCCEEEEEECCCCCCH-HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 257899999999999764 33333 466777777889999999999999 8888888877754
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.60 E-value=2.9e-15 Score=148.12 Aligned_cols=151 Identities=16% Similarity=0.051 Sum_probs=100.7
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCcC---cC------------cce-------------------eeeEEEEEEEE
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVVF---YP------------YLF-------------------SAAFITQTVCL 85 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~~---~~------------~Ti-------------------g~~~~~~~i~~ 85 (373)
.....++++++|. |||||+++|++..- .. .|. |.+.......+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 3445688999997 99999999986541 10 011 11111111122
Q ss_pred CCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160 86 DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165 (373)
Q Consensus 86 ~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
......+.||||+|+++|......+++.+|++|+|+|+++.... ...+++..+.. .
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~---------------------~-- 155 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASL---------------------L-- 155 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHH---------------------T--
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---------------------c--
Confidence 22345689999999999988888889999999999999886432 23334444433 1
Q ss_pred CCCeEEEEEeCCCCCCCCcc---cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q psy18160 166 PNIVIALAGNKADLPTSRRC---VEYSEGEAYAEENG-----LLFMETSAKTAMNVNEIF 217 (373)
Q Consensus 166 ~~~piilVgnK~Dl~~~~~~---v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~lf 217 (373)
...|+++|+||+|+.+.... ...++..++++.++ ++++++||++|.||+++|
T Consensus 156 ~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 156 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 12369999999999753111 12345666777777 679999999999999853
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.59 E-value=4.4e-16 Score=153.99 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=103.4
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC--cCcCc------------------------------ceeeeEEEEEEEECCEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV--VFYPY------------------------------LFSAAFITQTVCLDDVT 89 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~--~~~~~------------------------------Tig~~~~~~~i~~~~~~ 89 (373)
...++++++|. |||||+++|+.. .+... ..|.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 34688999997 999999999864 22210 01111111122233344
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
..+.||||+|+++|......+++.+|++|+|+|+++ .+|+.+..|..+..++ ..+.. ...-.|
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~-----------~~~~~-----~~~~~~ 146 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREH-----------IILAK-----TMGLDQ 146 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHH-----------HHHHH-----HTTCTT
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHH-----------HHHHH-----HcCCCe
Confidence 679999999999999888899999999999999998 7888665544333321 00000 012236
Q ss_pred EEEEEeCCCCCCCC-c----ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q psy18160 170 IALAGNKADLPTSR-R----CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNEIFV 218 (373)
Q Consensus 170 iilVgnK~Dl~~~~-~----~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~lf~ 218 (373)
+++|+||+|+.+.. + ....+++.++++.++ ++++++||++|.|+.+++.
T Consensus 147 iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 147 LIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred EEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 89999999997521 1 122455677777776 6799999999999986543
No 166
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.58 E-value=4.4e-15 Score=135.81 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=102.6
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceee--eEEEEEEEECCEEEEEEEEeCCCc--------ccccccch
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSA--AFITQTVCLDDVTIRFEIWDTAGQ--------ERYHTLAP 108 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~--~~~~~~i~~~~~~v~l~i~Dt~G~--------e~~~~l~~ 108 (373)
...++++++|. |||||+|++++..+... +.+. ......+..++ ..+.||||||. +++.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 35689999997 99999999999887654 2222 22233445555 45789999996 44433333
Q ss_pred hhc----cCCcEEEEEEECCCHhhH-HHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160 109 MYY----RNAQAAIIVYDITNQDTF-GRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR 183 (373)
Q Consensus 109 ~~~----~~ad~iilv~D~~~~~Sf-~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~ 183 (373)
.++ +++|++|+|+|+++.... ..+.+|+..+.. ....+.|++|++||.|+....
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~iilv~nK~Dl~~~~ 155 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG---------------------EDVLKWMVIVFTRKEDLAGGS 155 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC---------------------GGGGGGEEEEEECGGGGTTCC
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC---------------------hhhhccEEEEEEchHhcCCCC
Confidence 333 899999999999853211 122233333221 122368999999999996531
Q ss_pred cc-----cCHHHHHHHHHHcCCeEEEEcCCC-----CCCHHHHHHHHHHHcch
Q psy18160 184 RC-----VEYSEGEAYAEENGLLFMETSAKT-----AMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 184 ~~-----v~~~e~~~~~~~~~~~~~evSak~-----~~gI~~lf~~L~~~i~~ 226 (373)
.. ...++.+.+.+..+..++.++++. +.+|++|++.|.+.+.+
T Consensus 156 ~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 156 LHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 10 111346777888888887777665 57999999999887764
No 167
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.58 E-value=1.9e-15 Score=140.28 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=90.6
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcC----------c-ceeeeEEEEEEEECCEEEEEEEEeCCCccc-------cc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYP----------Y-LFSAAFITQTVCLDDVTIRFEIWDTAGQER-------YH 104 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~----------~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~-------~~ 104 (373)
..++++++|. |||||+|++++..... . |++.++....+..++..+.+.+|||+|... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4578999997 9999999977654322 2 666677666666667678999999999732 22
Q ss_pred ccc-------hhhcc-------------CCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160 105 TLA-------PMYYR-------------NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMA 164 (373)
Q Consensus 105 ~l~-------~~~~~-------------~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
.+. ..|++ .+|+++++++.+...-...-..++..+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~------------------------ 142 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH------------------------ 142 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh------------------------
Confidence 232 33333 2789999997765221111122333321
Q ss_pred CCCCeEEEEEeCCCCCCCCc-ccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 165 PPNIVIALAGNKADLPTSRR-CVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 165 ~~~~piilVgnK~Dl~~~~~-~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
..+|+++|+||+|+..... ....+.+.+.....+++++++||++++|+++++++|.+.+.
T Consensus 143 -~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 143 -EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp -TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred -ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 1789999999999864311 01112345556677899999999999999999999987664
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.58 E-value=6e-15 Score=150.64 Aligned_cols=151 Identities=19% Similarity=0.120 Sum_probs=103.4
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc-------ceeeeEEEEEE------------EECCEEEEEEEEeCCCccccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY-------LFSAAFITQTV------------CLDDVTIRFEIWDTAGQERYH 104 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-------Tig~~~~~~~i------------~~~~~~v~l~i~Dt~G~e~~~ 104 (373)
..+++++|. |||||+++|.+..+... ++|..+..... .++.....+.||||||++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 357888887 99999999998765432 34433321100 000011248999999999999
Q ss_pred ccchhhccCCcEEEEEEECCC---HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC
Q psy18160 105 TLAPMYYRNAQAAIIVYDITN---QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT 181 (373)
Q Consensus 105 ~l~~~~~~~ad~iilv~D~~~---~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 181 (373)
.++..+++.+|++|+|+|+++ +.+++.+.. +.. .++|+++|+||+|+..
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~------------------------~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM------------------------YRTPFVVAANKIDRIH 136 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH------------------------TTCCEEEEEECGGGST
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH------------------------cCCeEEEEeccccccc
Confidence 999999999999999999999 667665442 222 4689999999999964
Q ss_pred CCccc-----------CHH-----------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 182 SRRCV-----------EYS-----------EGEAYAEENG---------------LLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 182 ~~~~v-----------~~~-----------e~~~~~~~~~---------------~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
..... ..+ +........+ .+++++||++|.||++++++|...+
T Consensus 137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 21100 000 1111122222 3799999999999999999998766
Q ss_pred c
Q psy18160 225 P 225 (373)
Q Consensus 225 ~ 225 (373)
.
T Consensus 217 ~ 217 (594)
T 1g7s_A 217 Q 217 (594)
T ss_dssp H
T ss_pred c
Confidence 4
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.57 E-value=2.9e-15 Score=144.94 Aligned_cols=143 Identities=7% Similarity=-0.049 Sum_probs=102.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCcceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITN 125 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~ 125 (373)
+++++|. |||||+++|+.... |++..+. .+..++ ..+.||||||+++|.......++.+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~gi---Ti~~~~~--~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~- 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGT---SSDITMY--NNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P- 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEE---ESSSEEE--EECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-
T ss_pred EEEEECCCCCCHHHHHHHHHhCCE---EEEeeEE--EEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-
Confidence 7888887 99999999991110 5554442 333333 468999999999998777778899999999999 4
Q ss_pred HhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeE-EEEEe-CCCCCCCCcccCH--HHHHHHHHHcC--
Q psy18160 126 QDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVI-ALAGN-KADLPTSRRCVEY--SEGEAYAEENG-- 199 (373)
Q Consensus 126 ~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilVgn-K~Dl~~~~~~v~~--~e~~~~~~~~~-- 199 (373)
...+....+++..+.. .++|. ++++| |+|+ +. +.+.. +++.++++..+
T Consensus 94 ~g~~~qt~e~~~~~~~------------------------~~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~ 147 (370)
T 2elf_A 94 QGLDAHTGECIIALDL------------------------LGFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQ 147 (370)
T ss_dssp TCCCHHHHHHHHHHHH------------------------TTCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTT
T ss_pred CCCcHHHHHHHHHHHH------------------------cCCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCC
Confidence 3445555566655544 24565 88899 9999 43 22222 44555555443
Q ss_pred -CeEEE--EcCCC---CCCHHHHHHHHHHHcch
Q psy18160 200 -LLFME--TSAKT---AMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 200 -~~~~e--vSak~---~~gI~~lf~~L~~~i~~ 226 (373)
+++++ +||++ +.|++++++.|.+.+..
T Consensus 148 ~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 148 DWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 68999 99999 99999999999887653
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.57 E-value=3.3e-16 Score=156.19 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=89.0
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhh--CcCcC--------------------------------c--ceeeeEEEEEEE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVIN--VVFYP--------------------------------Y--LFSAAFITQTVC 84 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~--~~~~~--------------------------------~--Tig~~~~~~~i~ 84 (373)
....++++++|. |||||+++|+. +.+.. . |++..+ ..+.
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~ 117 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFE 117 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEE
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEe
Confidence 456789999997 99999999974 22210 0 332221 2333
Q ss_pred ECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQ 161 (373)
Q Consensus 85 ~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
.++ ..+.||||+|+++|......+++.+|++|+|+|+++. .+|+...+|.+.+..
T Consensus 118 ~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~-------------------- 175 (467)
T 1r5b_A 118 TEH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL-------------------- 175 (467)
T ss_dssp CSS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH--------------------
T ss_pred cCC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH--------------------
Confidence 444 5689999999999998888889999999999999986 344432233322222
Q ss_pred hcCCCCCe-EEEEEeCCCCCCCC--c---ccCHHHHHHHHHHc-C------CeEEEEcCCCCCCHHHHH
Q psy18160 162 RMAPPNIV-IALAGNKADLPTSR--R---CVEYSEGEAYAEEN-G------LLFMETSAKTAMNVNEIF 217 (373)
Q Consensus 162 ~~~~~~~p-iilVgnK~Dl~~~~--~---~v~~~e~~~~~~~~-~------~~~~evSak~~~gI~~lf 217 (373)
....++| ++||+||+|+.... . ....++..++++.. + ++++++||++|.|++++|
T Consensus 176 -~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 176 -ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp -HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred -HHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0113566 99999999996421 0 11233566677666 3 569999999999998765
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.55 E-value=5.9e-15 Score=157.77 Aligned_cols=157 Identities=15% Similarity=0.058 Sum_probs=108.9
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCc-------Cc---------Cc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVV-------FY---------PY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~-------~~---------~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
....++++++|. |||||+++|++.. +. .. +.|.++....+.++.....+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 345688999997 9999999998741 10 01 3444333333445445567899999999999
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe-EEEEEeCCCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV-IALAGNKADLPTS 182 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl~~~ 182 (373)
......+++.+|++|+|+|+++....+ ..+++..+.. .++| ++||+||+|+.+.
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~------------------------lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ------------------------VGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH------------------------HTCSCEEEEEECCTTCCC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH------------------------cCCCeEEEEEeecccccc
Confidence 888888999999999999999864332 2334444433 2567 8999999999753
Q ss_pred Ccc--cCHHHHHHHHHHcC-----CeEEEEcCCCC--------CCHHHHHHHHHHHcc
Q psy18160 183 RRC--VEYSEGEAYAEENG-----LLFMETSAKTA--------MNVNEIFVEIAKKLP 225 (373)
Q Consensus 183 ~~~--v~~~e~~~~~~~~~-----~~~~evSak~~--------~gI~~lf~~L~~~i~ 225 (373)
... ...+++.++++.++ ++++++||++| .||+++++.|...+.
T Consensus 428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 111 12345667777776 58999999999 468999999887665
No 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.54 E-value=2e-16 Score=158.10 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=100.2
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIV 120 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv 120 (373)
..+++++|. |||||+++|.+..+... ++..+.....+..++ ..+.||||||++.|..++..+++.+|++++|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 357888887 99999999998765543 111111112233344 3578999999999999999999999999999
Q ss_pred EECCCH---hhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC-cccCHH--HHHHH
Q psy18160 121 YDITNQ---DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-RCVEYS--EGEAY 194 (373)
Q Consensus 121 ~D~~~~---~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~-~~v~~~--e~~~~ 194 (373)
+|+++. .+.+.+ ..+.. .++|+++++||+|+.... ..+..+ +...+
T Consensus 82 Vda~~g~~~qT~e~l----~~~~~------------------------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~ 133 (501)
T 1zo1_I 82 VAADDGVMPQTIEAI----QHAKA------------------------AQVPVVVAVNKIDKPEADPDRVKNELSQYGIL 133 (501)
T ss_dssp EETTTBSCTTTHHHH----HHHHH------------------------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCC
T ss_pred eecccCccHHHHHHH----HHHHh------------------------cCceEEEEEEeccccccCHHHHHHHHHHhhhh
Confidence 999883 344332 22222 467899999999996531 111100 00011
Q ss_pred HHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 195 AEENG--LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 195 ~~~~~--~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
+..++ ++++++||++|.||+++|+.|...
T Consensus 134 ~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 134 PEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 22223 689999999999999999998643
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.54 E-value=1.2e-15 Score=151.76 Aligned_cols=143 Identities=13% Similarity=0.053 Sum_probs=98.2
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhC--cCcC--------------------------------c--ceeeeEEEEEEEEC
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINV--VFYP--------------------------------Y--LFSAAFITQTVCLD 86 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~--~~~~--------------------------------~--Tig~~~~~~~i~~~ 86 (373)
..++++++|. |||||+++|++. .+.. . |+...+ ..+..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~~~~~- 82 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--WKFET- 82 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--EEEEC-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--EEEec-
Confidence 4688999997 999999999864 1210 0 333332 22333
Q ss_pred CEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hHH---HHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160 87 DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TFG---RAKSWVKELQRMAPPNIDTFGRAKSWVKEL 160 (373)
Q Consensus 87 ~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 160 (373)
....+.||||||+++|......+++.+|++|+|+|+++.. +|+ ...+++..+..
T Consensus 83 -~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~------------------- 142 (458)
T 1f60_A 83 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT------------------- 142 (458)
T ss_dssp -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-------------------
T ss_pred -CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-------------------
Confidence 3457999999999999988888999999999999998753 332 22222222222
Q ss_pred hhcCCCCC-eEEEEEeCCCCCCCCc---ccCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q psy18160 161 QRMAPPNI-VIALAGNKADLPTSRR---CVEYSEGEAYAEENG-----LLFMETSAKTAMNVNEI 216 (373)
Q Consensus 161 ~~~~~~~~-piilVgnK~Dl~~~~~---~v~~~e~~~~~~~~~-----~~~~evSak~~~gI~~l 216 (373)
.++ +++||+||+|+.+... ....+++.++++.++ ++++++||++|.|+.++
T Consensus 143 -----~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 143 -----LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp -----TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred -----cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 244 4999999999963211 112345666667666 58999999999999754
No 174
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.4e-15 Score=153.25 Aligned_cols=149 Identities=16% Similarity=0.098 Sum_probs=97.6
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcCcCc--------------------------------ceeeeEEEEEEEECCE
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVFYPY--------------------------------LFSAAFITQTVCLDDV 88 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~--------------------------------Tig~~~~~~~i~~~~~ 88 (373)
....++++++|. |||||+++|++...... ..|.++......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 445789999997 99999999986532110 1222221222223233
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hHH---HHHHHHHHHHhhCCCCCCcccccchhHHhhhh
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TFG---RAKSWVKELQRMAPPNIDTFGRAKSWVKELQR 162 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
...+.||||||+++|......+++.+|++|+|+|+++.. +|. ...+.+..+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--------------------- 302 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--------------------- 302 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---------------------
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---------------------
Confidence 467899999999999998889999999999999998742 110 11111111111
Q ss_pred cCCCCCeEEEEEeCCCCCCCCcccCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q psy18160 163 MAPPNIVIALAGNKADLPTSRRCVEY----SEGEAYAEENG-----LLFMETSAKTAMNVNEI 216 (373)
Q Consensus 163 ~~~~~~piilVgnK~Dl~~~~~~v~~----~e~~~~~~~~~-----~~~~evSak~~~gI~~l 216 (373)
....|++||+||+|+.+. +.... +++..++...+ ++++++||++|.||+++
T Consensus 303 --lgi~~iIVVvNKiDl~~~-~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 303 --LGIHNLIIAMNKMDNVDW-SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp --TTCCEEEEEEECTTTTTT-CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred --cCCCeEEEEEecccccch-hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 123469999999999763 22222 23444555544 58999999999999876
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.52 E-value=2.2e-15 Score=141.06 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=74.8
Q ss_pred EEEEEEeCCCcc-------------cccccchhhccCCcEEE-EEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccch
Q psy18160 90 IRFEIWDTAGQE-------------RYHTLAPMYYRNAQAAI-IVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKS 155 (373)
Q Consensus 90 v~l~i~Dt~G~e-------------~~~~l~~~~~~~ad~ii-lv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~ 155 (373)
..+.||||||.. .+..+...|++.+++++ +|+|+++..+..+...|+..+..
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~-------------- 190 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP-------------- 190 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--------------
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--------------
Confidence 568999999964 34556778888888777 69999876554444344444322
Q ss_pred hHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH--cC-CeEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE--NG-LLFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 156 ~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~--~~-~~~~evSak~~~gI~~lf~~L~~~i 224 (373)
.+.|+++|+||+|+.+. +....+........ .+ .+++++||+++.|++++|+.|.+..
T Consensus 191 ----------~~~~~i~V~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 191 ----------QGQRTIGVITKLDLMDE-GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp ----------TCSSEEEEEECGGGSCT-TCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred ----------CCCeEEEEEEccccCCC-CchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 46899999999999764 22222222110001 12 3678999999999999999988743
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.51 E-value=4.8e-14 Score=146.24 Aligned_cols=110 Identities=13% Similarity=-0.021 Sum_probs=77.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc-------------------ceeeeEEEEEEEECCEEEEEEEEeCCCcccc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY-------------------LFSAAFITQTVCLDDVTIRFEIWDTAGQERY 103 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~-------------------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~ 103 (373)
...+++++|. |||||+++|++...... ..+.++..+...+....+.++||||+|+++|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4467888886 99999999994332200 1122332333333334578999999999999
Q ss_pred cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCC
Q psy18160 104 HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP 180 (373)
Q Consensus 104 ~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 180 (373)
......+++.+|++++|+|+++....... +++..+.. .++|+++|+||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~------------------------~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER------------------------LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH------------------------TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH------------------------ccCCEEEEecCCchh
Confidence 98899999999999999999876543332 34444433 368999999999986
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.50 E-value=4.4e-14 Score=124.91 Aligned_cols=151 Identities=12% Similarity=0.064 Sum_probs=97.7
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEEEEEEEECCEEEEEEEEeCCCccc----------ccccch
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFITQTVCLDDVTIRFEIWDTAGQER----------YHTLAP 108 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----------~~~l~~ 108 (373)
....+++++|. |||||++++++..+... +.|..+....+.+++ .+.+|||+|... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 34568999997 99999999998874322 555544334444444 467999999742 222233
Q ss_pred hhc---cCCcEEEEEEECCCHhhHHH--HHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCC
Q psy18160 109 MYY---RNAQAAIIVYDITNQDTFGR--AKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR 183 (373)
Q Consensus 109 ~~~---~~ad~iilv~D~~~~~Sf~~--i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~ 183 (373)
.++ +.++++++++|++++.++.. +.+|+ .. .+.|+++|+||+|+....
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~------------------------~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD------------------------SNIAVLVLLTKADKLASG 153 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH------------------------TTCCEEEEEECGGGSCHH
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH------------------------cCCCeEEEEecccCCCch
Confidence 344 57899999999988765432 22232 22 357899999999986531
Q ss_pred -cccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 184 -RCVEYSEGEAYAEENG--LLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 184 -~~v~~~e~~~~~~~~~--~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
++...+.+.+++...+ +.++++||+++.|++++++.|.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 154 ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 1122345556665554 57899999999999999999987654
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.50 E-value=5.9e-15 Score=151.03 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=89.0
Q ss_pred cccCCCCCCcEEEEEEcC---ChhHHHHHhhhCc-------------------------------CcCc-ceeeeEEEEE
Q psy18160 38 MMSGKRQSDCMAQIWLKD---RVDCMTQIVINVV-------------------------------FYPY-LFSAAFITQT 82 (373)
Q Consensus 38 ~~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~-------------------------------~~~~-Tig~~~~~~~ 82 (373)
.+........++++++|. |||||+++|+... +... ..|.+.....
T Consensus 168 ~~~~~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~ 247 (592)
T 3mca_A 168 IFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAS 247 (592)
T ss_dssp GGGGSCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------
T ss_pred HhhhccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeE
Confidence 344455667889999997 9999999996421 0000 1122222222
Q ss_pred EEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHh---hH---HHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD---TF---GRAKSWVKELQRMAPPNIDTFGRAKSW 156 (373)
Q Consensus 83 i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~---Sf---~~i~~~l~~i~~~~~~~~~~~~~~~~~ 156 (373)
..+......+.||||+|+++|......+++.+|++|+|+|+++.. .+ ....+.+..+..
T Consensus 248 ~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--------------- 312 (592)
T 3mca_A 248 TTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--------------- 312 (592)
T ss_dssp -----------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---------------
T ss_pred EEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---------------
Confidence 223333467899999999999998888999999999999998532 11 001111122222
Q ss_pred HHhhhhcCCCCCe-EEEEEeCCCCCCCCcc---cCHHHHHHHH-HHcCC-----eEEEEcCCCCCCHH------------
Q psy18160 157 VKELQRMAPPNIV-IALAGNKADLPTSRRC---VEYSEGEAYA-EENGL-----LFMETSAKTAMNVN------------ 214 (373)
Q Consensus 157 ~~~~~~~~~~~~p-iilVgnK~Dl~~~~~~---v~~~e~~~~~-~~~~~-----~~~evSak~~~gI~------------ 214 (373)
.++| +|||+||+|+.+.... ...++...++ +..++ +++++||++|.||.
T Consensus 313 ---------lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~ 383 (592)
T 3mca_A 313 ---------LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK 383 (592)
T ss_dssp ---------SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCC
T ss_pred ---------cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccc
Confidence 2444 9999999998652111 1122334444 44454 79999999999998
Q ss_pred --HHHHHHHHHcc
Q psy18160 215 --EIFVEIAKKLP 225 (373)
Q Consensus 215 --~lf~~L~~~i~ 225 (373)
.|++.|...+.
T Consensus 384 g~~Lle~l~~~~p 396 (592)
T 3mca_A 384 GPTLLSALDQLVP 396 (592)
T ss_dssp SCCHHHHHHTSCC
T ss_pred hHHHHHHHHhhcc
Confidence 67777765443
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=1.7e-13 Score=126.32 Aligned_cols=113 Identities=11% Similarity=0.031 Sum_probs=80.3
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ce--eeeEEEEEEEECCEEEEEEEEeCCCcccccccchhhcc------
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LF--SAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR------ 112 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Ti--g~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~------ 112 (373)
..++++++|. |||||+++|++..+... .. ........+..++. .+.||||||++++..+...+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4589999997 99999999999886433 11 22233344555654 6899999999988877666654
Q ss_pred ---CCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCC--CCeEEEEEeCCCCCCC
Q psy18160 113 ---NAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP--NIVIALAGNKADLPTS 182 (373)
Q Consensus 113 ---~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilVgnK~Dl~~~ 182 (373)
++|++++|+|++... +... ..|+..+... ... ..|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~---------------------~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQT---------------------FGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHH---------------------HCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHH---------------------hchhhhcCEEEEEeCcccCCC
Confidence 889999999997654 4333 3566666551 112 2489999999998643
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.43 E-value=5.7e-13 Score=134.48 Aligned_cols=112 Identities=12% Similarity=0.026 Sum_probs=73.7
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCc--Cc----------------C----c-ceeeeEEEEEEEECCEEEEEEEEeCCC
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVV--FY----------------P----Y-LFSAAFITQTVCLDDVTIRFEIWDTAG 99 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~--~~----------------~----~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G 99 (373)
...+++++|. |||||+++|+... +. . . +.|.++....+.++...+.+.||||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4578888887 9999999999631 10 0 0 122221111122222336789999999
Q ss_pred cccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 100 QERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 100 ~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
+++|......+++.+|++|+|+|+++...... ..++..+. ..++|+++|+||+|+
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~------------------------~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR------------------------LRDTPILTFMNKLDR 146 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT------------------------TTTCCEEEEEECTTS
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH------------------------HcCCCEEEEEcCcCC
Confidence 99999888899999999999999987543221 22222222 247899999999998
Q ss_pred CCC
Q psy18160 180 PTS 182 (373)
Q Consensus 180 ~~~ 182 (373)
...
T Consensus 147 ~~~ 149 (529)
T 2h5e_A 147 DIR 149 (529)
T ss_dssp CCS
T ss_pred ccc
Confidence 653
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.43 E-value=4.8e-13 Score=139.25 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=80.2
Q ss_pred CCCCcEEEEEEcC---ChhHHHHHhhhCc--C------cC------------c---ceeeeEEEEEEEECCEEEEEEEEe
Q psy18160 43 RQSDCMAQIWLKD---RVDCMTQIVINVV--F------YP------------Y---LFSAAFITQTVCLDDVTIRFEIWD 96 (373)
Q Consensus 43 ~~~~~i~ivvlG~---GKTsLl~rl~~~~--~------~~------------~---Tig~~~~~~~i~~~~~~v~l~i~D 96 (373)
+.....+++++|. |||||+++|+... + .. . |++... ..+.+++ +.+.|||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~--~~~~~~~--~~i~liD 83 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV--TTCFWKD--HRINIID 83 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCE--EEEEETT--EEEEEEC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccce--EEEEECC--eEEEEEE
Confidence 3455678888887 9999999998421 1 00 0 333222 2333343 6789999
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160 97 TAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK 176 (373)
Q Consensus 97 t~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK 176 (373)
|+|+.+|...+..+++.+|++|+|+|+++..++.....|.. +.. .++|+++|+||
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~------------------------~~~p~ivviNK 138 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK------------------------YKVPRIAFANK 138 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH------------------------TTCCEEEEEEC
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH------------------------cCCCEEEEEEC
Confidence 99999999999999999999999999999887776665543 333 37899999999
Q ss_pred CCCCCC
Q psy18160 177 ADLPTS 182 (373)
Q Consensus 177 ~Dl~~~ 182 (373)
+|+...
T Consensus 139 iD~~~~ 144 (691)
T 1dar_A 139 MDKTGA 144 (691)
T ss_dssp TTSTTC
T ss_pred CCcccC
Confidence 998653
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.42 E-value=4.2e-14 Score=133.06 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=83.3
Q ss_pred cEEEEEEcC---ChhHHHHHhhhC-cCcCc-----------ceeeeEEEEEEEECCEEEEEEEEeCCCc-------cccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINV-VFYPY-----------LFSAAFITQTVCLDDVTIRFEIWDTAGQ-------ERYH 104 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~-~~~~~-----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~-------e~~~ 104 (373)
.++++++|. |||||++++.+. .+... |++.......+..++....+.+|||+|+ +++.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 367889996 999999998875 33321 2221111112222445678999999998 6677
Q ss_pred ccch-------hhccCCc-------------EEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcC
Q psy18160 105 TLAP-------MYYRNAQ-------------AAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMA 164 (373)
Q Consensus 105 ~l~~-------~~~~~ad-------------~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
.+.. .++++++ +++++.+.+. .+++.+.. +.+.. .
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~---------------------l- 152 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKA---------------------I- 152 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHH---------------------H-
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHH---------------------H-
Confidence 6665 5555443 2333333222 23443331 22222 1
Q ss_pred CCCCeEEEEEeCCCCCCCCcc--cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 165 PPNIVIALAGNKADLPTSRRC--VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 165 ~~~~piilVgnK~Dl~~~~~~--v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
....|+++|+||.|+... +. +..+++.++++.++++++++||+++ |++++|..+++.+..
T Consensus 153 ~~~~~iilV~~K~Dl~~~-~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 153 HNKVNIVPVIAKADTLTL-KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp TTTSCEEEEECCGGGSCH-HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HhcCCEEEEEEeCCCCCH-HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 136789999999998753 22 2346788899999999999999999 999999999988753
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.40 E-value=3.4e-13 Score=132.05 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=82.9
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc-----------ceeeeEEEEEEEECCEEEEEEEEeCCCccccc-------c
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY-----------LFSAAFITQTVCLDDVTIRFEIWDTAGQERYH-------T 105 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-----------Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~-------~ 105 (373)
.+.++++|. |||||+++|++..+... |++.++....+..++....+.+||++|...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 367788887 99999999998876311 33322222222234445579999999986542 1
Q ss_pred ------------------cchhhccCCcEEEEEEECCCH-hhHHHHH-HHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160 106 ------------------LAPMYYRNAQAAIIVYDITNQ-DTFGRAK-SWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165 (373)
Q Consensus 106 ------------------l~~~~~~~ad~iilv~D~~~~-~Sf~~i~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
+.+.+++++++.+++|+.+.. .++..+. .|+..+.
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~------------------------- 165 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH------------------------- 165 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-------------------------
Confidence 234456677776677776553 3555544 4554432
Q ss_pred CCCeEEEEEeCCCCCCCCcccCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 166 PNIVIALAGNKADLPTSRRCVEY--SEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 166 ~~~piilVgnK~Dl~~~~~~v~~--~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++|+|+|+||+|+... +.+.. +++.+++..++++++++||+++.+++++|..+...++
T Consensus 166 ~~v~iIlVinK~Dll~~-~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 166 EKVNIIPLIAKADTLTP-EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp TTSEEEEEEESTTSSCH-HHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred ccCcEEEEEEcccCccH-HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 36899999999998654 34443 5677888889999999999999999999988887665
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.39 E-value=9e-14 Score=134.02 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=76.6
Q ss_pred EEEEEeCCCcccc-------------cccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhH
Q psy18160 91 RFEIWDTAGQERY-------------HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWV 157 (373)
Q Consensus 91 ~l~i~Dt~G~e~~-------------~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~ 157 (373)
.+.+|||||..++ ..+...|++++|++|+|+|..+..... ..|+..+..
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~---------------- 198 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE---------------- 198 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHH----------------
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHH----------------
Confidence 5889999998876 556778899999999999876543221 233443433
Q ss_pred HhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q psy18160 158 KELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIA 221 (373)
Q Consensus 158 ~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~ 221 (373)
....+.|+++|+||+|+.+. +....+.+..++..++.+|+++|++++.++++.+..+.
T Consensus 199 -----~~~~~~~~i~V~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 199 -----VDPSGDRTFGVLTKIDLMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp -----SCTTCTTEEEEEECGGGCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred -----hcccCCCEEEEEeCCccCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 23356799999999999764 33444445445555678899999999999887765543
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.39 E-value=6.3e-13 Score=122.94 Aligned_cols=115 Identities=11% Similarity=0.050 Sum_probs=76.8
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccchh-------h--c
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPM-------Y--Y 111 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~~~-------~--~ 111 (373)
..++++++|. |||||+|+|++..+... +.+.++....+.++...+.+.+|||+|++++..+... + .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 3579999997 99999999999886433 2332222222333333467899999999887654332 1 3
Q ss_pred cCCcEEEEEEECCCHhhHHHH-HHHHHHHHhhCCCCCCcccccchhHHhhhhcCCC--CCeEEEEEeCCCCCCC
Q psy18160 112 RNAQAAIIVYDITNQDTFGRA-KSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPP--NIVIALAGNKADLPTS 182 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilVgnK~Dl~~~ 182 (373)
+.+|++++|+|++.. ++... .+|+..+... ... ..|+++|+||+|+...
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~---------------------~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDS---------------------FGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHH---------------------HCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHH---------------------hCcccccCEEEEEECcccCCc
Confidence 479999999999753 34433 3666666541 112 2699999999998654
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.39 E-value=2.2e-12 Score=134.45 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=78.0
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC--cCc------------C------c---ceeeeEEEEEEEEC-----CEEEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV--VFY------------P------Y---LFSAAFITQTVCLD-----DVTIRFE 93 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~--~~~------------~------~---Tig~~~~~~~i~~~-----~~~v~l~ 93 (373)
....+++++|. |||||+++|+.. .+. . . |+.... ..+.++ +..+.+.
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCceeEE
Confidence 45567888886 999999999753 111 0 0 222221 223332 3448899
Q ss_pred EEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEE
Q psy18160 94 IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALA 173 (373)
Q Consensus 94 i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilV 173 (373)
||||+|+++|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~------------------------~~ip~ilv 140 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK------------------------YKVPRIAF 140 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH------------------------cCCCEEEE
Confidence 999999999998899999999999999999987665544433 22222 46899999
Q ss_pred EeCCCCCC
Q psy18160 174 GNKADLPT 181 (373)
Q Consensus 174 gnK~Dl~~ 181 (373)
+||+|+..
T Consensus 141 iNKiD~~~ 148 (704)
T 2rdo_7 141 VNKMDRMG 148 (704)
T ss_pred EeCCCccc
Confidence 99999864
No 187
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.39 E-value=6.3e-13 Score=138.44 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=77.7
Q ss_pred EEEEEeCCCccc---ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160 91 RFEIWDTAGQER---YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN 167 (373)
Q Consensus 91 ~l~i~Dt~G~e~---~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (373)
.+.||||||... .......+++++|++|+|+|++++.+..+...|...+.. .+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~------------------------~~ 230 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG------------------------RG 230 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT------------------------SC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh------------------------hC
Confidence 488999999754 344566788999999999999988887776655443322 35
Q ss_pred CeEEEEEeCCCCCCCCcccCHH---H-------HHH-----HHHH--------cCCeEEEEcCC--------------CC
Q psy18160 168 IVIALAGNKADLPTSRRCVEYS---E-------GEA-----YAEE--------NGLLFMETSAK--------------TA 210 (373)
Q Consensus 168 ~piilVgnK~Dl~~~~~~v~~~---e-------~~~-----~~~~--------~~~~~~evSak--------------~~ 210 (373)
.|+++|+||+|+... ..++.+ + ..+ +... ...+++++||+ ++
T Consensus 231 ~~iiiVlNK~Dl~~~-~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~ 309 (695)
T 2j69_A 231 LTVFFLVNAWDQVRE-SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDG 309 (695)
T ss_dssp CCEEEEEECGGGGGG-GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTT
T ss_pred CCEEEEEECcccccc-cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhc
Confidence 689999999998643 111111 1 111 1111 12369999999 99
Q ss_pred CCHHHHHHHHHHHcch
Q psy18160 211 MNVNEIFVEIAKKLPK 226 (373)
Q Consensus 211 ~gI~~lf~~L~~~i~~ 226 (373)
.|+++++..|.+.+..
T Consensus 310 ~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 310 TGFPKFMDSLNTFLTR 325 (695)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999876643
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.37 E-value=2.6e-12 Score=125.76 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=105.3
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCEEEEEEEEeCCCccc----ccccchhh---ccC
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDVTIRFEIWDTAGQER----YHTLAPMY---YRN 113 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~----~~~l~~~~---~~~ 113 (373)
.++++|. |||||++++++...... |.... ...+.+++ ...+.+||++|..+ +..+...+ +..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 3667776 99999999998753221 33322 23445554 24578999999743 33333333 347
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 114 AQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 114 ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
++.+++++|++ ..++..+..|..++..+. . .....|.+||+||+|+... ...++..+
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la--------------~-----aL~~~P~ILVlNKlDl~~~---~~~~~l~~ 292 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYD--------------P-----ALLRRPSLVALNKVDLLEE---EAVKALAD 292 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHC--------------H-----HHHHSCEEEEEECCTTSCH---HHHHHHHH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHh--------------H-----HhhcCCEEEEEECCChhhH---HHHHHHHH
Confidence 99999999998 667777777766665420 0 0124688999999998652 23344555
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 194 ~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.++..+.+++++||++++|+++++++|.+.+.+
T Consensus 293 ~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 293 ALAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp HHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 556667899999999999999999999998864
No 189
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.37 E-value=8.1e-13 Score=124.53 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=69.4
Q ss_pred EEEEEEeCCCccc-------------ccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccch
Q psy18160 90 IRFEIWDTAGQER-------------YHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKS 155 (373)
Q Consensus 90 v~l~i~Dt~G~e~-------------~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~ 155 (373)
..+.||||+|..+ +......+++.+|++++|+|.++.. .......++..+.
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~--------------- 195 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD--------------- 195 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---------------
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---------------
Confidence 4689999999753 4456677889999999999974432 1111112222221
Q ss_pred hHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCC------CCCHHHHHHHHHHHcc
Q psy18160 156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKT------AMNVNEIFVEIAKKLP 225 (373)
Q Consensus 156 ~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~------~~gI~~lf~~L~~~i~ 225 (373)
..+.|+++|+||+|+... .....+.+.......+..++++|+.+ +.|++++++.+.+.+.
T Consensus 196 ---------~~~~~~i~v~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 196 ---------PEGKRTIGVITKLDLMDK-GTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp ---------SSCSSEEEEEECTTSSCS-SCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred ---------CCCCcEEEEEcCcccCCc-chHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 246899999999999764 22112222211111225677777654 6889999998887765
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.36 E-value=1.9e-12 Score=134.89 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=79.7
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhh--CcCcC--------------------c-ceeeeEEEEEEEECCEEEEEEEEeC
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVIN--VVFYP--------------------Y-LFSAAFITQTVCLDDVTIRFEIWDT 97 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~--~~~~~--------------------~-Tig~~~~~~~i~~~~~~v~l~i~Dt 97 (373)
.....+++++|. |||||+++|+. +.+.. . |+.... ..+.+++ +.+.||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~--~~~~~~~--~~i~liDT 82 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAA--TTAAWEG--HRVNIIDT 82 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSE--EEEEETT--EEEEEECC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeee--EEEEECC--eeEEEEEC
Confidence 345677888887 99999999995 22210 0 222221 2334444 67899999
Q ss_pred CCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCC
Q psy18160 98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177 (373)
Q Consensus 98 ~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~ 177 (373)
+|+.+|...+..+++.+|++|+|+|+++..++.....|. .+.. .++|+++|+||+
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~------------------------~~~p~ilviNK~ 137 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT------------------------YGVPRIVFVNKM 137 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH------------------------TTCCEEEEEECT
T ss_pred cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH------------------------cCCCEEEEEECC
Confidence 999999999999999999999999999887776665553 3333 367999999999
Q ss_pred CCCCC
Q psy18160 178 DLPTS 182 (373)
Q Consensus 178 Dl~~~ 182 (373)
|+...
T Consensus 138 Dl~~~ 142 (693)
T 2xex_A 138 DKLGA 142 (693)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 98653
No 191
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.34 E-value=4.6e-13 Score=129.38 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=73.2
Q ss_pred CcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCC
Q psy18160 99 GQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKAD 178 (373)
Q Consensus 99 G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~D 178 (373)
..++|..+.+.+++.+|++++|+|++++. ..|...+.+ . ..+.|+++|+||+|
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~---------------------~-~~~~p~ilV~NK~D 107 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHR---------------------F-VGNNKVLLVGNKAD 107 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHH---------------------H-SSSSCEEEEEECGG
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHH---------------------H-hCCCcEEEEEEChh
Confidence 56889999999999999999999999853 345444444 2 23789999999999
Q ss_pred CCCCCcccCHHHHHH----HHHHcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 179 LPTSRRCVEYSEGEA----YAEENGL---LFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 179 l~~~~~~v~~~e~~~----~~~~~~~---~~~evSak~~~gI~~lf~~L~~~ 223 (373)
+.+. .+..++..+ +++..|+ +++++||++|.|++++++.|.+.
T Consensus 108 L~~~--~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 108 LIPK--SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp GSCT--TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCc--ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 9753 233344433 3667787 79999999999999999988654
No 192
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.31 E-value=5.8e-15 Score=132.35 Aligned_cols=57 Identities=19% Similarity=0.097 Sum_probs=46.0
Q ss_pred CeEEEEEeCCCCCCCCcccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 168 IVIALAGNKADLPTSRRCVEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 168 ~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.|.++|+||+|+.+. +.+..+++.++++.. +.+++++||++|.|++++|+.|.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADA-VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHH-HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCch-hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 466999999998643 235667777777765 578999999999999999999988764
No 193
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=9.1e-12 Score=121.38 Aligned_cols=168 Identities=18% Similarity=0.121 Sum_probs=87.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEE-------------------EECC-EEEEEEEEeCCC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTV-------------------CLDD-VTIRFEIWDTAG 99 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i-------------------~~~~-~~v~l~i~Dt~G 99 (373)
++++++|. |||||+|++++...... |+........+ .+++ ..+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 36888887 99999999998863211 33333222111 1233 257899999999
Q ss_pred ccc----ccccch---hhccCCcEEEEEEECCCH-----------hhHHHHHHHHHHHHhh----CCCCCCc--------
Q psy18160 100 QER----YHTLAP---MYYRNAQAAIIVYDITNQ-----------DTFGRAKSWVKELQRM----APPNIDT-------- 149 (373)
Q Consensus 100 ~e~----~~~l~~---~~~~~ad~iilv~D~~~~-----------~Sf~~i~~~l~~i~~~----~~~~~~~-------- 149 (373)
+.+ ...+.. .+++++|++++|+|+++. +++.++..|..++... .....+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~ 160 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ 160 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 854 233333 347899999999999886 5566555444443221 0000000
Q ss_pred ------------------ccccc-------------hhHHh----hhh-cCCCCCeEEEEEeCCCCCCCCcccCHHHHHH
Q psy18160 150 ------------------FGRAK-------------SWVKE----LQR-MAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193 (373)
Q Consensus 150 ------------------~~~~~-------------~~~~~----~~~-~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~ 193 (373)
..... .|..+ +.. ......|+++|+||+|+. . . ...++..+
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~-~-~~l~~l~~ 237 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-S-D-EQIKRLVR 237 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C-H-HHHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c-h-HHHHHHHH
Confidence 00000 01000 000 001248999999999986 2 1 11233333
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHH
Q psy18160 194 YAEENGLLFMETSAKTAMNVNEIFV 218 (373)
Q Consensus 194 ~~~~~~~~~~evSak~~~gI~~lf~ 218 (373)
.+...+.+++++||+.+.++.++++
T Consensus 238 ~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 238 EEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred HHhhcCCcEEEEeccchhhHHHHHh
Confidence 3333477899999999999887655
No 194
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.29 E-value=7.9e-13 Score=123.14 Aligned_cols=138 Identities=16% Similarity=0.105 Sum_probs=92.7
Q ss_pred EeCCCcc-cccccchhhccCCcEEEEEEECCCHhhHH--HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEE
Q psy18160 95 WDTAGQE-RYHTLAPMYYRNAQAAIIVYDITNQDTFG--RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIA 171 (373)
Q Consensus 95 ~Dt~G~e-~~~~l~~~~~~~ad~iilv~D~~~~~Sf~--~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii 171 (373)
-+.||+. +........++.+|++++|+|+.++.+.. .+.+|+ .+.|.+
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----------------------------~~kp~i 54 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----------------------------KNKPRI 54 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----------------------------SSSCEE
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----------------------------CCCCEE
Confidence 3456664 33344556788999999999999987654 233321 367999
Q ss_pred EEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCC
Q psy18160 172 LAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC 251 (373)
Q Consensus 172 lVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc 251 (373)
+|+||+|+.+. ...+...++.+..+++++++||+++.|++++++.+.+.+..+.......+
T Consensus 55 lVlNK~DL~~~---~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~---------------- 115 (282)
T 1puj_A 55 MLLNKADKADA---AVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKG---------------- 115 (282)
T ss_dssp EEEECGGGSCH---HHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTT----------------
T ss_pred EEEECcccCCH---HHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcC----------------
Confidence 99999999652 11233344555567899999999999999999988776653321000000
Q ss_pred CcceeeeecccccceeecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCc
Q psy18160 252 NTQFVQCKYKSSIHILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQ 321 (373)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~ 321 (373)
.....++++++|.+|||||||+|++.+..
T Consensus 116 -----------------------------------------~~~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 116 -----------------------------------------VKPRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp -----------------------------------------CCCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred -----------------------------------------CCCCCceEEEEecCCCchHHHHHHHhcCc
Confidence 00123788999999999999999998654
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.28 E-value=8e-12 Score=132.70 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=86.1
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC------------cCcCc---------ceeeeEEEEEEE------------ECCE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV------------VFYPY---------LFSAAFITQTVC------------LDDV 88 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~------------~~~~~---------Tig~~~~~~~i~------------~~~~ 88 (373)
....+++++|. |||||+++|+.. .+... |++.......+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 34567888887 999999999864 22110 444333322333 2445
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
.+.++||||+|+++|...+..+++.+|++|+|+|+++..+++....|... .. .++
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~------------------------~~~ 151 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG------------------------ERI 151 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH------------------------TTC
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH------------------------cCC
Confidence 78899999999999999999999999999999999998888776555432 22 368
Q ss_pred eEEEEEeCCCCCCCCcccCHHH
Q psy18160 169 VIALAGNKADLPTSRRCVEYSE 190 (373)
Q Consensus 169 piilVgnK~Dl~~~~~~v~~~e 190 (373)
|+++|+||+|+...+...+.++
T Consensus 152 p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 152 KPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp EEEEEEECHHHHHHTSCCCHHH
T ss_pred CeEEEEECCCcchhhhccCHHH
Confidence 9999999999863222334443
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.27 E-value=4.5e-12 Score=112.96 Aligned_cols=146 Identities=11% Similarity=0.045 Sum_probs=91.2
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc---ceeeeEE------------EEEEEECC------------------EEE
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY---LFSAAFI------------TQTVCLDD------------------VTI 90 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig~~~~------------~~~i~~~~------------------~~v 90 (373)
...++++|. |||||+++|+....... ++..++. ...+.++. ..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 357777776 99999999997632211 2211110 01112211 124
Q ss_pred EEEEEeCCCcccccccchhh-ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 91 RFEIWDTAGQERYHTLAPMY-YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 91 ~l~i~Dt~G~e~~~~l~~~~-~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
.+.+|||+|+-. .+.+ ...++++++|+|+++... ....+... .+.|
T Consensus 110 d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---------------------------~~~~ 156 (221)
T 2wsm_A 110 DLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDD--VVEKHPEI---------------------------FRVA 156 (221)
T ss_dssp SEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---------------------------HHTC
T ss_pred CEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcch--hhhhhhhh---------------------------hhcC
Confidence 578999998511 1111 236789999999876532 11111111 1357
Q ss_pred EEEEEeCCCCCCCCcccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 170 IALAGNKADLPTSRRCVEYSEGEAYAEEN--GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~--~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.++|+||+|+.+. +....++..++++.. +.+++++||++|.|++++|++|.+.+..
T Consensus 157 ~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 157 DLIVINKVALAEA-VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp SEEEEECGGGHHH-HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CEEEEecccCCcc-hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 8999999998542 224566676666654 4789999999999999999999987754
No 197
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.24 E-value=1.8e-12 Score=125.29 Aligned_cols=98 Identities=23% Similarity=0.294 Sum_probs=72.0
Q ss_pred CCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCC
Q psy18160 98 AGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKA 177 (373)
Q Consensus 98 ~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~ 177 (373)
..+++|.++...+++.++++++|+|++++.+ .|...+.+ . ..+.|+++|+||+
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~---------------------~-l~~~piilV~NK~ 108 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPR---------------------F-AADNPILLVGNKA 108 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHH---------------------H-CTTSCEEEEEECG
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHH---------------------H-hCCCCEEEEEECh
Confidence 3588999999999999999999999998763 23333333 2 2367999999999
Q ss_pred CCCCCCcccCHHHHHH----HHHHcCC---eEEEEcCCCCCCHHHHHHHHHHHc
Q psy18160 178 DLPTSRRCVEYSEGEA----YAEENGL---LFMETSAKTAMNVNEIFVEIAKKL 224 (373)
Q Consensus 178 Dl~~~~~~v~~~e~~~----~~~~~~~---~~~evSak~~~gI~~lf~~L~~~i 224 (373)
|+.+. ....+...+ +++..|+ +++.+||++|.|++++++.+.+..
T Consensus 109 DLl~~--~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 109 DLLPR--SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp GGSCT--TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hcCCC--ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 99753 233334433 3566676 789999999999999999886543
No 198
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.24 E-value=2.7e-13 Score=130.31 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=65.6
Q ss_pred EEEEEEeCCCcc-------------cccccchhhccCCcEEEEE-EECCCHhhHHHHHHHHHHHHhhCCCCCCcccccch
Q psy18160 90 IRFEIWDTAGQE-------------RYHTLAPMYYRNAQAAIIV-YDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKS 155 (373)
Q Consensus 90 v~l~i~Dt~G~e-------------~~~~l~~~~~~~ad~iilv-~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~ 155 (373)
..+.||||||.. .+..+...|+++++.++++ .|.+....-.+...++..+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~---------------- 193 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV---------------- 193 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----------------
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----------------
Confidence 568999999963 3445667788777655554 5554322212222233322
Q ss_pred hHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH--HHHHcC-CeEEEEcCCCCCCHHHHHHHHHH
Q psy18160 156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA--YAEENG-LLFMETSAKTAMNVNEIFVEIAK 222 (373)
Q Consensus 156 ~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~--~~~~~~-~~~~evSak~~~gI~~lf~~L~~ 222 (373)
...+.|+++|+||+|+.+... ...+.... +...++ .+++++||+++.|++++++.+.+
T Consensus 194 --------~~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 194 --------DPQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp --------CTTCTTEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred --------CcCCCceEEEeccccccCcch-hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 235789999999999975421 11111110 011123 25788999999999999999876
No 199
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.18 E-value=2.9e-12 Score=114.65 Aligned_cols=60 Identities=33% Similarity=0.522 Sum_probs=45.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|+++||||+|++||+.+.|...|.||+| .+|..+.+.+++..++|+|||+|
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig--------~d~~~k~~~~~~~~v~l~iwDta 70 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG--------IDFLSKTMYLEDRTIRLQLWDTA 70 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------------CEEEEEECSSCEEEEEEECCS
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc--------eEEEEEEEEecceEEEEEEEECC
Confidence 3469999999999999999999999999999999999 78877888899999999999986
No 200
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.12 E-value=7e-11 Score=103.75 Aligned_cols=111 Identities=9% Similarity=-0.021 Sum_probs=70.7
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeC
Q psy18160 97 TAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNK 176 (373)
Q Consensus 97 t~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK 176 (373)
.+||++++.+|+.||.++|++|||+|.+|++-++ ..+-+.++....... ....++|++|.+||
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee----------------~~L~gapLLVlANK 171 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPA----------------FGSSGRPLLVLSCI 171 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTT----------------SSCSCSCEEEEEEE
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcch----------------hhhCCCeEEEEeCC
Confidence 3589999999999999999999999999986443 222222222211100 11257899999999
Q ss_pred C-CCCCCCcccCHHHHHHHHH----HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 177 A-DLPTSRRCVEYSEGEAYAE----ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 177 ~-Dl~~~~~~v~~~e~~~~~~----~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
. |++.. .+..++.+... ...+.+..|||++|+|+.+.++||.+.+..+
T Consensus 172 qqDlp~A---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 172 SQGDVKR---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp SSTTSCB---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CcCccCC---CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 5 77543 55555443221 1235689999999999999999998877643
No 201
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.11 E-value=8.1e-11 Score=119.37 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=79.0
Q ss_pred ccCCCCCCcEEEEEEcC---ChhHHHHHhhhCcCcC---c-ceeeeEEEEEEEECCE-----------------------
Q psy18160 39 MSGKRQSDCMAQIWLKD---RVDCMTQIVINVVFYP---Y-LFSAAFITQTVCLDDV----------------------- 88 (373)
Q Consensus 39 ~~~~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~---~-Tig~~~~~~~i~~~~~----------------------- 88 (373)
+.........+++++|. |||||+|+|++..+.. . ..+.+. ...+..++.
T Consensus 57 l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~ 135 (550)
T 2qpt_A 57 LEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPF 135 (550)
T ss_dssp CCSTTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC----------------
T ss_pred cccccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhh
Confidence 33344556788999997 9999999999998741 1 111110 001111000
Q ss_pred --------E---------EEEEEEeCCCccc-----------ccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHH
Q psy18160 89 --------T---------IRFEIWDTAGQER-----------YHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQ 140 (373)
Q Consensus 89 --------~---------v~l~i~Dt~G~e~-----------~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~ 140 (373)
. ..+.||||+|... |...+..+++.+|++++|+|+++.........|+..+.
T Consensus 136 g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~ 215 (550)
T 2qpt_A 136 GNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR 215 (550)
T ss_dssp --CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT
T ss_pred cccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH
Confidence 0 2588999999865 44566678899999999999987554455556655543
Q ss_pred hhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCC
Q psy18160 141 RMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 182 (373)
. .+.|+++|+||+|+...
T Consensus 216 ~------------------------~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 216 G------------------------HEDKIRVVLNKADMVET 233 (550)
T ss_dssp T------------------------CGGGEEEEEECGGGSCH
T ss_pred h------------------------cCCCEEEEEECCCccCH
Confidence 3 35789999999998653
No 202
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.11 E-value=6.3e-12 Score=115.81 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=90.3
Q ss_pred cchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcc
Q psy18160 106 LAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRC 185 (373)
Q Consensus 106 l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~ 185 (373)
.....++++|++++|+|+.++.+..... +. .. +.|.++|.||+|+.+.
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--------------------------l~-ll--~k~~iivlNK~DL~~~--- 61 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYG--------------------------VD-FS--RKETIILLNKVDIADE--- 61 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTT--------------------------SC-CT--TSEEEEEEECGGGSCH---
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChH--------------------------HH-hc--CCCcEEEEECccCCCH---
Confidence 4456688999999999999876532110 00 01 6799999999999653
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccc
Q psy18160 186 VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIH 265 (373)
Q Consensus 186 v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~ 265 (373)
...+...++.+..++++ .+||+++.|++++++.+...+
T Consensus 62 ~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~----------------------------------------- 99 (262)
T 3cnl_A 62 KTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRL----------------------------------------- 99 (262)
T ss_dssp HHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTT-----------------------------------------
T ss_pred HHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhh-----------------------------------------
Confidence 11233445566678888 999999999998876542100
Q ss_pred eeecccCCCCCCCCCCCCCCCCCCcccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecc
Q psy18160 266 ILTMANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMP 345 (373)
Q Consensus 266 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~ 345 (373)
++++++|.+|+|||||++++....+. ...++.|. .....
T Consensus 100 --------------------------------~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~--------T~~~~ 138 (262)
T 3cnl_A 100 --------------------------------ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGI--------TKGIQ 138 (262)
T ss_dssp --------------------------------CEEEEEESTTSSHHHHHHHHHTTCC-------------------CCSC
T ss_pred --------------------------------hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCC--------ccceE
Confidence 47799999999999999999866543 23455662 22222
Q ss_pred eeeeCCeEEEEEehhhHH
Q psy18160 346 TKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 346 ~~~v~~~~~~l~iw~~~~ 363 (373)
.+.++. .+.|||.+-
T Consensus 139 ~~~~~~---~~~l~DtpG 153 (262)
T 3cnl_A 139 WFSLEN---GVKILDTPG 153 (262)
T ss_dssp EEECTT---SCEEESSCE
T ss_pred EEEeCC---CEEEEECCC
Confidence 333332 578888764
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=8.2e-10 Score=105.84 Aligned_cols=159 Identities=12% Similarity=-0.004 Sum_probs=94.7
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCccccc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQERYH 104 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e~~~ 104 (373)
++++++|. |||||+|++++..+... |++.... .+.+++. ...+++|||+|+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 57888886 99999999999764322 4444332 3444442 1579999999998753
Q ss_pred ----ccch---hhccCCcEEEEEEECCCH----------hhHHHHHHHHHHHH---------------hh-CCCCC----
Q psy18160 105 ----TLAP---MYYRNAQAAIIVYDITNQ----------DTFGRAKSWVKELQ---------------RM-APPNI---- 147 (373)
Q Consensus 105 ----~l~~---~~~~~ad~iilv~D~~~~----------~Sf~~i~~~l~~i~---------------~~-~~~~~---- 147 (373)
.+.. .+++++|++++|+|+++. ++++++..+..++. +. .....
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~ 160 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF 160 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence 3333 347899999999999862 34555443333321 10 00000
Q ss_pred --Ccccccc------------hhHHh----hhhc-CCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCC
Q psy18160 148 --DTFGRAK------------SWVKE----LQRM-APPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAK 208 (373)
Q Consensus 148 --~~~~~~~------------~~~~~----~~~~-~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak 208 (373)
..+.... .|..+ +... .....|+++++||.|..-. .....+.+.+++...+.+++++||+
T Consensus 161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~-~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE-NNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSS-SCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccccc-ccHHHHHHHHHHHHcCCCEEEechH
Confidence 0000000 12111 2212 2345899999999996432 2244566778888889999999976
Q ss_pred C
Q psy18160 209 T 209 (373)
Q Consensus 209 ~ 209 (373)
.
T Consensus 240 ~ 240 (363)
T 1jal_A 240 I 240 (363)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.06 E-value=7.8e-11 Score=113.25 Aligned_cols=103 Identities=11% Similarity=0.052 Sum_probs=67.9
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.||||+|... .....+..+|++++|+|....+.+..+. ....+.|
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-----------------------------~~~~~~p 219 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-----------------------------KGVLELA 219 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-----------------------------TTSGGGC
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-----------------------------HhHhhcC
Confidence 5688999999432 2334468999999999986544321111 0112458
Q ss_pred EEEEEeCCCCCCCCcccCHHHHHHHHHH---c-------CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 170 IALAGNKADLPTSRRCVEYSEGEAYAEE---N-------GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~---~-------~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
.++|+||+|+... .... ....++... . +.+++++||++|.||++++++|.+.+..
T Consensus 220 ~ivVlNK~Dl~~~-~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 220 DIVVVNKADGEHH-KEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp SEEEEECCCGGGH-HHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCcCh-hHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 8999999998542 1111 111122221 1 4689999999999999999999887754
No 205
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.06 E-value=1.7e-11 Score=115.17 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred ccccccchhhccCCcEEEEEEECCCHh-hHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCC
Q psy18160 101 ERYHTLAPMYYRNAQAAIIVYDITNQD-TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179 (373)
Q Consensus 101 e~~~~l~~~~~~~ad~iilv~D~~~~~-Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl 179 (373)
++...+.+..++++|.+++|+|+.++. +...+.+++..+.. .++|++||.||+||
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~------------------------~~~~~vivlnK~DL 129 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------------------------NDIQPIICITKMDL 129 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------------------------TTCEEEEEEECGGG
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------------------------CCCCEEEEEECCcc
Confidence 444556677889999999999998765 55667777766554 57899999999999
Q ss_pred CCCCcc--cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q psy18160 180 PTSRRC--VEYSEGEAYAEENGLLFMETSAKTAMNVNEIFV 218 (373)
Q Consensus 180 ~~~~~~--v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~ 218 (373)
.+. .. ...++..++++..|++++.+||+++.|+++++.
T Consensus 130 ~~~-~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 130 IED-QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred Cch-hhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 764 11 013445556666789999999999999887654
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.99 E-value=7.5e-10 Score=106.58 Aligned_cols=168 Identities=17% Similarity=0.071 Sum_probs=95.8
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECC-------------------EEEEEEEEeCCCc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDD-------------------VTIRFEIWDTAGQ 100 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~-------------------~~v~l~i~Dt~G~ 100 (373)
++++++|. |||||+|++++...... |+...... +.+.+ ....+++|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 35778886 99999999998652111 34333322 22222 2357999999999
Q ss_pred cccc----ccch---hhccCCcEEEEEEECCCH----------hhHHHHHHHHHHHH---------------h-------
Q psy18160 101 ERYH----TLAP---MYYRNAQAAIIVYDITNQ----------DTFGRAKSWVKELQ---------------R------- 141 (373)
Q Consensus 101 e~~~----~l~~---~~~~~ad~iilv~D~~~~----------~Sf~~i~~~l~~i~---------------~------- 141 (373)
.++. .+.. .+++.+|++++|+|+++. +.+.++..+..++. .
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 7653 2333 347899999999999862 22333322111110 0
Q ss_pred -------------hCCCCCCcccccchhHHh----hhhcC-CCCCeEEEEEeCCCCC--CCCcccCHHHHHHHHHHcCCe
Q psy18160 142 -------------MAPPNIDTFGRAKSWVKE----LQRMA-PPNIVIALAGNKADLP--TSRRCVEYSEGEAYAEENGLL 201 (373)
Q Consensus 142 -------------~~~~~~~~~~~~~~~~~~----~~~~~-~~~~piilVgnK~Dl~--~~~~~v~~~e~~~~~~~~~~~ 201 (373)
......+. ....|..+ +.... ....|+++++||.|.. +..+....+.+.++++..+.+
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~--~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~ 237 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPA--RTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE 237 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCG--GGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHhcCCCc--ccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe
Confidence 00000000 00011111 11111 2347999999999842 210124566778888888999
Q ss_pred EEEEcCCCCCCHHHHHHH
Q psy18160 202 FMETSAKTAMNVNEIFVE 219 (373)
Q Consensus 202 ~~evSak~~~gI~~lf~~ 219 (373)
++++||+.+.++.++++.
T Consensus 238 vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 238 VVVVSARLEAELAELSGE 255 (368)
T ss_dssp EEEECHHHHHHHHTSCHH
T ss_pred EEEeechhHHHHHHhchH
Confidence 999999987666666544
No 207
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.96 E-value=8.5e-10 Score=111.75 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=57.4
Q ss_pred EEEECCEEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160 82 TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQ 161 (373)
Q Consensus 82 ~i~~~~~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
.+.+++ +.++|+||||+..|..-....++-+|++|+|+|+.+.---+...-| ..+.+
T Consensus 94 ~~~~~~--~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~-------------------- 150 (548)
T 3vqt_A 94 QFPYRD--RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM-------------------- 150 (548)
T ss_dssp EEEETT--EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH--------------------
T ss_pred EEEECC--EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH--------------------
Confidence 344555 5689999999999999899999999999999999876544443334 33333
Q ss_pred hcCCCCCeEEEEEeCCCCCCC
Q psy18160 162 RMAPPNIVIALAGNKADLPTS 182 (373)
Q Consensus 162 ~~~~~~~piilVgnK~Dl~~~ 182 (373)
.++|++++.||+|....
T Consensus 151 ----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 151 ----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp ----TTCCEEEEEECTTSCCC
T ss_pred ----hCCceEEEEecccchhc
Confidence 57899999999998653
No 208
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.96 E-value=6.7e-10 Score=102.15 Aligned_cols=108 Identities=7% Similarity=-0.068 Sum_probs=74.3
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCCHhhHH---HHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEE
Q psy18160 97 TAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFG---RAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALA 173 (373)
Q Consensus 97 t~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~---~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilV 173 (373)
.+||+..+.+|+.||.++|++|+|+|.+|++.++ ++.+....+.. .....++|++|.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e--------------------~~~l~~apLLVf 253 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP--------------------AFGSSGRPLLVL 253 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCH--------------------HHHCTTCCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcc--------------------hhhcCCCeEEEE
Confidence 4789999999999999999999999999987543 22211111111 001257899999
Q ss_pred EeC-CCCCCCCcccCHHHHHHHHH----HcCCeEEEEcCCCCCCHHHHHHHHHHHcchh
Q psy18160 174 GNK-ADLPTSRRCVEYSEGEAYAE----ENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 174 gnK-~Dl~~~~~~v~~~e~~~~~~----~~~~~~~evSak~~~gI~~lf~~L~~~i~~~ 227 (373)
+|| .|++.. .+..++.+... ...+.+..|||.+|+|+.+.++||.+.+..+
T Consensus 254 ANKkQDlp~A---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 254 SCISQGDVKR---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp EEESSTTSCB---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred eCCcccccCC---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 997 588653 55555433221 1235689999999999999999999988644
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.91 E-value=1.6e-09 Score=98.98 Aligned_cols=109 Identities=14% Similarity=0.024 Sum_probs=68.1
Q ss_pred EEEEEEeCCCcccccccch------hhccCCcEEEEEEECCCHh---hHHHHHHHHHHHHhhCCCCCCcccccchhHHhh
Q psy18160 90 IRFEIWDTAGQERYHTLAP------MYYRNAQAAIIVYDITNQD---TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKEL 160 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~------~~~~~ad~iilv~D~~~~~---Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 160 (373)
+.+.||||+|+.++..... ..+.. +++++++|..... .+.....+......
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~------------------- 168 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL------------------- 168 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-------------------
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-------------------
Confidence 4688999999876543322 24456 8888888875433 33222211111111
Q ss_pred hhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHH----------------------------HHHHcC--CeEEEEcCCCC
Q psy18160 161 QRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA----------------------------YAEENG--LLFMETSAKTA 210 (373)
Q Consensus 161 ~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~----------------------------~~~~~~--~~~~evSak~~ 210 (373)
..+.|+++|+||+|+... .. .++..+ +++.++ .+++++||+++
T Consensus 169 ----~~~~p~~iv~NK~D~~~~-~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~ 241 (262)
T 1yrb_A 169 ----RLGATTIPALNKVDLLSE-EE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR 241 (262)
T ss_dssp ----HHTSCEEEEECCGGGCCH-HH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC
T ss_pred ----ccCCCeEEEEeccccccc-cc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc
Confidence 135789999999998653 11 111111 123333 47999999999
Q ss_pred CCHHHHHHHHHHHcc
Q psy18160 211 MNVNEIFVEIAKKLP 225 (373)
Q Consensus 211 ~gI~~lf~~L~~~i~ 225 (373)
.|+++++++|.+.+.
T Consensus 242 ~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 242 EGFEDLETLAYEHYC 256 (262)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc
Confidence 999999999987764
No 210
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.91 E-value=7e-10 Score=106.14 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=61.4
Q ss_pred hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHH
Q psy18160 110 YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYS 189 (373)
Q Consensus 110 ~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~ 189 (373)
.+.++|.+++|.+.....+...+.+|+..... .++|++||.||+||.+.......+
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~------------------------~~~~~iivlNK~DL~~~~~~~~~~ 182 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET------------------------LQVEPLIVLNKIDLLDDEGMDFVN 182 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH------------------------HTCEEEEEEECGGGCCHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh------------------------cCCCEEEEEECccCCCchhHHHHH
Confidence 46899999999776533466677788776655 367889999999997631000122
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q psy18160 190 EGEAYAEENGLLFMETSAKTAMNVNEIFVE 219 (373)
Q Consensus 190 e~~~~~~~~~~~~~evSak~~~gI~~lf~~ 219 (373)
+....++..|++++.+||+++.|++++...
T Consensus 183 ~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 183 EQMDIYRNIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp HHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence 233444567899999999999999988754
No 211
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.87 E-value=1.1e-08 Score=97.91 Aligned_cols=102 Identities=11% Similarity=0.041 Sum_probs=61.2
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.++||+|... -.......+|++++|+|.++....+.+.. .+ -..|
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i--------------------------l~~~ 214 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI--------------------------IEMA 214 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-----------------------------------------CCSC
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH--------------------------HhcC
Confidence 4578999999531 12345678999999999986543221110 01 1347
Q ss_pred EEEEEeCCCCCCCCcccCHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 170 IALAGNKADLPTSRRCVEYSEGEAYAE----------ENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~~~e~~~~~~----------~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++|+||+|+.+. ... .....++.. .+..+++.+||+++.|+++++++|.+.+.
T Consensus 215 ~ivVlNK~Dl~~~-~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 215 DLVAVTKSDGDLI-VPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp SEEEECCCSGGGH-HHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEeeecCCCc-hhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 7999999998532 000 011122221 12457899999999999999999987654
No 212
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.79 E-value=5.3e-09 Score=108.85 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=67.8
Q ss_pred EEEEEeCCCccc-------------ccccchhhc-cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160 91 RFEIWDTAGQER-------------YHTLAPMYY-RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSW 156 (373)
Q Consensus 91 ~l~i~Dt~G~e~-------------~~~l~~~~~-~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~ 156 (373)
.+.|+||||... ...+...|+ ..+|++++|+|+++...-.+...++..+..
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--------------- 215 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--------------- 215 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT---------------
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh---------------
Confidence 477999999543 222344455 478999999999875433333233333322
Q ss_pred HHhhhhcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHH----cC-CeEEEEcCCCCCCHHHHHHHHHHH
Q psy18160 157 VKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE----NG-LLFMETSAKTAMNVNEIFVEIAKK 223 (373)
Q Consensus 157 ~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~----~~-~~~~evSak~~~gI~~lf~~L~~~ 223 (373)
.+.|+++|.||+|+.+.. .... ...+ .+. ++ .+++.+||++|.|++++++.+.+.
T Consensus 216 ---------~g~pvIlVlNKiDlv~~~-~~~~-~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 216 ---------QGQRTIGVITKLDLMDEG-TDAR-DVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp ---------TCSSEEEEEECTTSSCTT-CCSH-HHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ---------cCCCEEEEEeCcccCCcc-hhhH-HHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 468999999999997642 1211 1111 001 12 256789999999999999988763
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.78 E-value=6.9e-09 Score=99.02 Aligned_cols=103 Identities=17% Similarity=0.043 Sum_probs=64.0
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.||||+|..... ....+.+|++++|+|.+....+..+.. .. .+.|
T Consensus 149 ~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--------------------------~~~p 196 (341)
T 2p67_A 149 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL--------------------------MEVA 196 (341)
T ss_dssp CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH--------------------------HHHC
T ss_pred CCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh--------------------------hccc
Confidence 468899999965432 234689999999999875432111100 00 1357
Q ss_pred EEEEEeCCCCCCCCcccC--HHHHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 170 IALAGNKADLPTSRRCVE--YSEGEAYAEEN-------GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~--~~e~~~~~~~~-------~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++|+||+|+... .... .++..+..... ..+++++||++|.|++++++.|.+.+.
T Consensus 197 ~ivv~NK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 197 DLIVINKDDGDNH-TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp SEEEECCCCTTCH-HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCh-HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 8999999998642 1111 01222222222 357899999999999999999988664
No 214
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.78 E-value=3.8e-08 Score=102.83 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=54.3
Q ss_pred EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160 88 VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN 167 (373)
Q Consensus 88 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (373)
+.+.++|+||||+..|..-....++-+|++|+|+|+.+.-..+...-|.. +.+ .+
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~------------------------~~ 137 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANK------------------------YG 137 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH------------------------HT
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHH------------------------cC
Confidence 35789999999999999988899999999999999987554333333333 333 37
Q ss_pred CeEEEEEeCCCCCC
Q psy18160 168 IVIALAGNKADLPT 181 (373)
Q Consensus 168 ~piilVgnK~Dl~~ 181 (373)
+|++++.||.|...
T Consensus 138 lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 138 VPRIVYVNKMDRQG 151 (709)
T ss_dssp CCEEEEEECSSSTT
T ss_pred CCeEEEEccccccC
Confidence 89999999999754
No 215
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.74 E-value=2.1e-09 Score=110.99 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=53.2
Q ss_pred EEEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCC
Q psy18160 88 VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPN 167 (373)
Q Consensus 88 ~~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (373)
+.+.++|+||||+..|.......++-+|++|+|+|+.+.-.-+...-| ..+.+ .+
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~------------------------~~ 119 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK------------------------MG 119 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH------------------------HT
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH------------------------cC
Confidence 346689999999999999888999999999999999875433332223 33333 36
Q ss_pred CeEEEEEeCCCCCCC
Q psy18160 168 IVIALAGNKADLPTS 182 (373)
Q Consensus 168 ~piilVgnK~Dl~~~ 182 (373)
+|.+++.||+|....
T Consensus 120 lp~i~~INKmDr~~a 134 (638)
T 3j25_A 120 IPTIFFINKIDQNGI 134 (638)
T ss_dssp CSCEECCEECCSSSC
T ss_pred CCeEEEEeccccccC
Confidence 788999999997543
No 216
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.71 E-value=3.9e-09 Score=91.43 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=52.9
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++++|||+|+++|+.+.|...|.||+| .+|. +.+.+++..+.++|||++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 77 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLE--------DTYS-SEETVDHQPVHLRVMDTA 77 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc--------ceee-EEEEECCEEEEEEEEECC
Confidence 34569999999999999999999999999999999999 6664 667789999999999986
No 217
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.67 E-value=7.6e-09 Score=88.70 Aligned_cols=61 Identities=30% Similarity=0.432 Sum_probs=38.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+..+|++++|++++|||+|+++|+.+.|...+.||+| .+|..+.+.+++..+.++|||++-
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~G 66 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG--------IDFKIRTIELDGKRIKLQIWDTAG 66 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHC--------EEEEEEEEEETTEEEEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------ceeEEEEEEECCEEEEEEEEcCCC
Confidence 3568999999999999999999999999999999999 788777888899999999999873
No 218
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=6.6e-09 Score=91.40 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=56.2
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+..+|++++|++++|||+|+++|+.+.|...+.+|+| .+|..+.+.+++..+.++|||++
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~Dt~ 83 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG--------VDFMIKTVEINGEKVKLQIWDTA 83 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence 345679999999999999999999999999999999999 78877888899999999999985
No 219
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.65 E-value=7.6e-09 Score=89.67 Aligned_cols=63 Identities=33% Similarity=0.435 Sum_probs=56.3
Q ss_pred cccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 292 ~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+..+|++++|++++|||+|+++++.+.|...+.+|+| .+|..+.+.+++..+.+.|||++
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 82 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG--------VEFSTRTVMLGTAAVKAQIWDTA 82 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS--------EEEEEEEEEETTEEEEEEEEEES
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEeCC
Confidence 3345679999999999999999999999999999999999 78877788889999999999975
No 220
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.64 E-value=5e-09 Score=91.89 Aligned_cols=61 Identities=38% Similarity=0.535 Sum_probs=45.9
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+..+|++++|++++|||+|+++++.+.|...+.+|+| .+|..+.+.+++..+.++|||++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~ 86 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG--------VDFTMKTLEIQGKRVKLQIWDTA 86 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC------------------CEEEEEEEETTEEEEEEEECCT
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcc--------eEEEEEEEEECCEEEEEEEEECC
Confidence 45579999999999999999999999999999999999 77776778889999999999975
No 221
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.63 E-value=8.4e-09 Score=88.00 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=50.9
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++|+.+.|.. |.||+| ..+ .+.+.+++..+.++|||++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~ 62 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES--------EQY-KKEMLVDGQTHLVLIREEA 62 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS--------SEE-EEEEEETTEEEEEEEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc--------eeE-EEEEEECCEEEEEEEEECC
Confidence 35899999999999999999999999987 889999 555 4778889999999999985
No 222
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.63 E-value=8.9e-09 Score=89.47 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=48.6
Q ss_pred ccccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 291 ~~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+...+..+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.+.|||++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~Dt~ 83 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG--------VDFKIKTVELRGKKIRLQIWDTA 83 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTT--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccc--------eeEEEEEEEECCeEEEEEEEeCC
Confidence 34445679999999999999999999999999999999999 77777888889999999999975
No 223
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.61 E-value=1e-08 Score=89.17 Aligned_cols=60 Identities=32% Similarity=0.468 Sum_probs=55.2
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++|+|||||++++....|...+.||+| .+|....+.++|+.+.++|||++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--------~~~~~~~i~~~g~~~~~~i~Dt~ 86 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--------VEFATRSIQVDGKTIKAQIWDTA 86 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEECC
Confidence 4568999999999999999999999999999999999 88877888899999999999975
No 224
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.61 E-value=1.1e-08 Score=88.87 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=53.5
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++++|||+|+++++.+.|...|.||+| .++. +.+.+++..+.++|||++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 79 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF--------ENFS-HVMKYKNEEFILHLWDTA 79 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEEE-EEEEETTEEEEEEEEEEC
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeee--------eeeE-EEEEECCEEEEEEEEECC
Confidence 34569999999999999999999999999999999999 6665 677889999999999975
No 225
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.60 E-value=1.3e-08 Score=88.06 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=52.3
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++++|||+|+++|+.+.|...|.||.+ +|. +.+.+++..+.++|||++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~---------~~~-~~~~~~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG---------RFK-KEIVVDGQSYLLLIRDEG 75 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE---------EEE-EEEEETTEEEEEEEEECS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc---------eEE-EEEEECCEEEEEEEEECC
Confidence 34569999999999999999999999999999999954 665 788899999999999985
No 226
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.60 E-value=9.4e-09 Score=91.15 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=50.8
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++++|||+|+++|+.+.|...|.||+| .+|. +.+.+++..+.++|||++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 83 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF--------ENYT-ACLETEEQRVELSLWDTS 83 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEEE-EEEEC--CEEEEEEEEEC
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeee--------eeEE-EEEEECCEEEEEEEEECC
Confidence 34569999999999999999999999999999999999 6664 777889999999999975
No 227
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.60 E-value=1.2e-08 Score=88.36 Aligned_cols=62 Identities=24% Similarity=0.441 Sum_probs=50.4
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.....+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.++|||++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 78 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------VEFGARMVNIDGKQIKLQIWDTA 78 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CC--------SSEEEEEEEETTEEEEEEEECCT
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------ceeEEEEEEECCEEEEEEEEECC
Confidence 345679999999999999999999999999999999999 66766777889999999999985
No 228
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.59 E-value=1.3e-08 Score=86.57 Aligned_cols=59 Identities=36% Similarity=0.517 Sum_probs=54.2
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...+.+|++ .++..+.+.+++..+.+.|||++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Dt~ 71 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG--------IDFLSKTMYLEDRTVRLQLWDTA 71 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------eEEEEEEEEECCeEEEEEEEECC
Confidence 458999999999999999999999999999999999 77777788889999999999975
No 229
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.59 E-value=1.2e-08 Score=88.28 Aligned_cols=59 Identities=29% Similarity=0.522 Sum_probs=53.7
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.+.|||++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 77 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG--------VDFRERAVDIDGERIKIQLWDTA 77 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCS--------CCEEEEEEEETTEEEEEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--------eEEEEEEEEECCEEEEEEEEECC
Confidence 468999999999999999999999999999999999 67766778889999999999974
No 230
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.58 E-value=1.3e-08 Score=85.92 Aligned_cols=60 Identities=35% Similarity=0.515 Sum_probs=54.3
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++++.+.|...+.||+| .++..+.+.+++..+.+.|||++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~ 63 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG--------ASFLTKKLNIGGKRVNLAIWDTA 63 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS--------CEEEEEEEESSSCEEEEEEEECC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccc--------eEEEEEEEEECCEEEEEEEEECC
Confidence 3568999999999999999999999999999999999 77776778889999999999975
No 231
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.57 E-value=1.9e-08 Score=86.95 Aligned_cols=62 Identities=29% Similarity=0.481 Sum_probs=55.2
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+..+|++++|++++|||+|+++++.+.|...+.+|+| .+|..+.+.+++..+.+.|||++
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 79 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--------IDFKVKTVYRHDKRIKLQIWDTA 79 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC--------CEEEEEEEEETTEEEEEEEEECC
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee--------EEEEEEEEEECCeEEEEEEEeCC
Confidence 345679999999999999999999999999999999999 77766777889999999999975
No 232
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.5e-06 Score=83.67 Aligned_cols=176 Identities=10% Similarity=0.054 Sum_probs=103.0
Q ss_pred hhhhhhhhhhhccCCCCcccccc--C----CCCCCcEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEE
Q psy18160 18 ALTVRVLKLKTQIPKGNWFSMMS--G----KRQSDCMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTV 83 (373)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i 83 (373)
.++.+..+++.++.......--. + -..+....++++|- |||||+|++++...... |+. .....+
T Consensus 37 ~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~--~~~g~~ 114 (376)
T 4a9a_A 37 QLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLV--TVPGVI 114 (376)
T ss_dssp HHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCC--EEEEEE
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceee--eeeEEE
Confidence 56777777776653322111100 1 13455678888886 99999999998764333 443 334566
Q ss_pred EECCEEEEEEEEeCCCcccccc----cch---hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchh
Q psy18160 84 CLDDVTIRFEIWDTAGQERYHT----LAP---MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSW 156 (373)
Q Consensus 84 ~~~~~~v~l~i~Dt~G~e~~~~----l~~---~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~ 156 (373)
.+++. .++++||||.-+-.. +.. ..++.||++++|+|++++.. ....+..++....
T Consensus 115 ~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~------------- 177 (376)
T 4a9a_A 115 RYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVG------------- 177 (376)
T ss_dssp EETTE--EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTT-------------
T ss_pred EeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhh-------------
Confidence 77774 578999999643221 222 24678999999999998743 2222223333310
Q ss_pred HHhhhhcCCCCCeEEEEEeCCCCCCC-------CcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q psy18160 157 VKELQRMAPPNIVIALAGNKADLPTS-------RRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFV 218 (373)
Q Consensus 157 ~~~~~~~~~~~~piilVgnK~Dl~~~-------~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~ 218 (373)
......|.+++.||.|.... ....+.++...+...+.+.--++-...+...+++.+
T Consensus 178 ------~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 178 ------IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID 240 (376)
T ss_dssp ------EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH
T ss_pred ------HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH
Confidence 11235677889999996421 123556677777777665433333344556666654
No 233
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.56 E-value=1.7e-08 Score=85.73 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=50.7
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...+.||+| .++..+.+.+++..+.+.|||++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 64 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--------VEFLNKDLEVDGHFVTMQIWDTA 64 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--------EEEEEEEEEETTEEEEEEEEECC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------eeEEEEEEEECCEEEEEEEEeCC
Confidence 3568999999999999999999999999999999999 77777788889999999999975
No 234
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.55 E-value=2.1e-08 Score=86.79 Aligned_cols=60 Identities=33% Similarity=0.490 Sum_probs=55.2
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++++.+.|...+.+|++ .++....+.+++..+.+.|||++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 73 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--------VDFKIRTIELDGKTIKLQIWDTA 73 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc--------ceEEEEEEEECCEEEEEEEEECC
Confidence 4568999999999999999999999999999999999 78877888889999999999975
No 235
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.54 E-value=1.7e-08 Score=89.03 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=52.8
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++++|||+|+++|+.+.|...|.||++ .++. +.+.+++..+.++|||++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 84 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF--------ENYT-ASFEIDTQRIELSLWDTS 84 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEEE-EEEESSSSEEEEEEEEEC
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--------eeEE-EEEEECCEEEEEEEEeCC
Confidence 34569999999999999999999999999999999999 6664 677889999999999975
No 236
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.54 E-value=1.7e-08 Score=88.02 Aligned_cols=61 Identities=33% Similarity=0.471 Sum_probs=55.0
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+..+|++++|++++|||+|+++++.+.|...+.+|++ .++....+.+++..+.+.|||++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 90 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG--------VDFKIRTIELDGKTIKLQIWDTA 90 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHC--------CSEEEEEEEETTEEEEEEEECCT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--------ceEEEEEEEECCEEEEEEEEECC
Confidence 35679999999999999999999999999999999999 67777778889999999999986
No 237
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.54 E-value=1e-08 Score=87.34 Aligned_cols=59 Identities=31% Similarity=0.390 Sum_probs=52.1
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCC-eEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLN-NNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~-~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|++++..+.|...|.||+| .++..+.+.+++ ..+.++|||++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~~Dt~ 64 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--------LDFFLRRITLPGNLNVTLQIWDIG 64 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--------SSEEEEEEEETTTEEEEEEEEECT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--------EEEEEEEEEeCCCCEEEEEEEECC
Confidence 458999999999999999999999999999999999 666667777776 78999999985
No 238
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.8e-08 Score=89.80 Aligned_cols=60 Identities=32% Similarity=0.471 Sum_probs=48.6
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++|+.+.|...+.||+| .+|..+.+.+++..+.++|||++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 70 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG--------VEFATRTLEIEGKRIKAQIWDTA 70 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------C--------CSEEEEEEEETTEEEEEEEECCT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------ceeEEEEEEECCEEEEEEEEECC
Confidence 4568999999999999999999999999999999999 67766777889999999999986
No 239
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.52 E-value=1.9e-08 Score=87.89 Aligned_cols=61 Identities=25% Similarity=0.120 Sum_probs=48.8
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|+++||||||+++|+...+...+.||++ .++..+.+.+++..+.|.|||++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~Dt~ 80 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP--------EDTYERRIMVDKEEVTLVVYDIW 80 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSC--------TTEEEEEEEETTEEEEEEEECCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcc--------cceEEEEEEECCEEEEEEEEecC
Confidence 34569999999999999999999986655555667777 45555677789999999999974
No 240
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.52 E-value=1.7e-08 Score=88.18 Aligned_cols=60 Identities=32% Similarity=0.483 Sum_probs=44.3
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.++|||++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~i~Dt~ 85 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG--------VDFQMKTLIVDGERTVLQLWDTA 85 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------CEEEEEEETTEEEEEEEEECT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcc--------ceeEEEEEEECCEEEEEEEEECC
Confidence 4468999999999999999999999999999999999 67766778889999999999975
No 241
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.52 E-value=2.3e-08 Score=87.99 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=51.7
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++|+.+.|...|.||+| .++. ..+.+++..+.++|||++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 65 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------DNFS-ANVAVDGQIVNLGLWDTA 65 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSC--------CCEE-EEEECSSCEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccc--------eeEE-EEEEECCEEEEEEEEECC
Confidence 458999999999999999999999999999999999 5553 667789999999999975
No 242
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.52 E-value=2.3e-08 Score=84.00 Aligned_cols=59 Identities=29% Similarity=0.464 Sum_probs=53.3
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|++++..+.|...+.||+| .++..+.+.+++..+.+.|||++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 62 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--------VDFLERQIQVNDEDVRLMLWDTA 62 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS--------SSEEEEEEEETTEEEEEEEECCT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceE--------EEEEEEEEEECCEEEEEEEEcCC
Confidence 458999999999999999999999999999999999 66666777789999999999986
No 243
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.51 E-value=3.5e-08 Score=83.96 Aligned_cols=60 Identities=33% Similarity=0.486 Sum_probs=52.2
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++++.+.|...+.+|++ .++....+.+++..+.+.|||++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 66 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--------VDFKIRTVEINGEKVKLQIWDTA 66 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBS--------EEEEEEEEEETTEEEEEEEEEET
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCce--------eEEEEEEEEECCEEEEEEEEcCC
Confidence 4568999999999999999999999999999999999 78877888889999999999986
No 244
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.51 E-value=1.8e-08 Score=88.09 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=43.4
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+..+|++++|++++|||+|+++++.+.|...+.+|+| .+|..+.+.+++..+.+.|||++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~l~Dt~ 82 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG--------VEFGSRVVNVGGKTVKLQIWDTA 82 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC--------------------CCEEEEEEEETTEEEEEEEECCT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccc--------ceeEEEEEEECCeeeEEEEEcCC
Confidence 34579999999999999999999999999999999999 67766777889999999999986
No 245
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.51 E-value=2.9e-08 Score=83.41 Aligned_cols=59 Identities=61% Similarity=0.839 Sum_probs=54.0
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.+.|||++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~ 63 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG--------AAFLTQTVCLDDTTVKFEIWDTA 63 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 468999999999999999999999999999999999 77777778889999999999974
No 246
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.51 E-value=2.4e-08 Score=85.91 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=52.4
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|++++..+.|...|.||++ .++. +.+.+++..+.++|||++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 63 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF--------ENYT-ASFEIDTQRIELSLWDTS 63 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE--------EEEE-EEEECSSCEEEEEEEEEC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEE-EEEEECCEEEEEEEEECC
Confidence 3468999999999999999999999999999999999 6664 677889999999999975
No 247
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.51 E-value=2.7e-08 Score=87.17 Aligned_cols=60 Identities=33% Similarity=0.460 Sum_probs=54.4
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|++++..+.|...|.||+| .+|..+.+.+++..+.+.|||++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 65 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG--------VDFKIKTVELDGKTVKLQIWDTA 65 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSC--------CCEEEEEEEETTEEEEEEEECCT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------ceeEEEEEEECCEEEEEEEEeCC
Confidence 3568999999999999999999999999999999999 67766778889999999999986
No 248
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.51 E-value=2.5e-08 Score=87.07 Aligned_cols=59 Identities=32% Similarity=0.497 Sum_probs=51.4
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++|+|||||++++++..|...+.||+| .++....+.++|..+.++|||++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--------~~~~~~~i~~~g~~~~~~i~Dt~ 62 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--------VEFATRSIQVDGKTIKAQIWDTA 62 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--------CEEEEEEEEETTEEEEEEEEECS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence 358999999999999999999999999999999999 77777888899999999999976
No 249
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.51 E-value=3e-08 Score=85.03 Aligned_cols=60 Identities=23% Similarity=0.394 Sum_probs=54.6
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.+.|||++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 67 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG--------VEFGSKIINVGGKYVKLQIWDTA 67 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSE--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 4568999999999999999999999999999999999 77777788889999999999974
No 250
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.51 E-value=2.6e-08 Score=86.78 Aligned_cols=59 Identities=25% Similarity=0.222 Sum_probs=44.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++|+.+.|...|.||++ ..+. +.+.+++..+.++|||++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 76 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF--------DNFS-AVVSVDGRPVRLQLCDTA 76 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSS--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------ceeE-EEEEECCEEEEEEEEECC
Confidence 4568999999999999999999999999999999999 6664 677889999999999985
No 251
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.51 E-value=3.1e-08 Score=85.53 Aligned_cols=60 Identities=33% Similarity=0.510 Sum_probs=54.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.+.|||++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 72 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG--------VDFKVKTISVDGNKAKLAIWDTA 72 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc--------eEEEEEEEEECCeEEEEEEEeCC
Confidence 3468999999999999999999999999999999999 78877888889999999999975
No 252
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.51 E-value=3e-08 Score=84.20 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=54.2
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+..+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.+.|||++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 72 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--------VEFGTRIIEVSGQKIKLQIWDTA 72 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCC--------CCEEEEEEEETTEEEEEEEEECT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eEEEEEEEEECCeEEEEEEEECC
Confidence 34569999999999999999999999999999999999 66666777789999999999975
No 253
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.50 E-value=3.6e-08 Score=86.09 Aligned_cols=60 Identities=27% Similarity=0.472 Sum_probs=54.6
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++++.+.|...+.+|+| .+|..+.+.+++..+.++|||++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 65 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--------IDFKVKTIYRNDKRIKLQIWDTA 65 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--------eeEEEEEEEECCeEEEEEEEECC
Confidence 3468999999999999999999999999999999999 77877788889999999999975
No 254
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.50 E-value=3.2e-08 Score=83.13 Aligned_cols=58 Identities=45% Similarity=0.570 Sum_probs=53.2
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|...+.||+| .++..+.+.+++..+.+.|||++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~ 60 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG--------AAFLTQRVTINEHTVKFEIWDTA 60 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEECC
Confidence 58999999999999999999999999999999999 77777778889999999999975
No 255
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.50 E-value=3.6e-08 Score=84.43 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=54.2
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++++|||+|+++++.+.|...|.+|++ .++ .+.+.+++..+.++|||++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~ 74 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE--------DSY-LKHTEIDNQWAILDVLDTA 74 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--------cee-EEEEEeCCcEEEEEEEECC
Confidence 34579999999999999999999999999999999999 777 4788899999999999975
No 256
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.48 E-value=2.3e-08 Score=84.17 Aligned_cols=58 Identities=34% Similarity=0.523 Sum_probs=46.1
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|...+.||+| .++..+.+.+++..+.+.|||++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~D~~ 60 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--------IDFKIKTVDINGKKVKLQIWDTA 60 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------------CCEEEEEEESSSCEEEEEEECCT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEeCC
Confidence 58999999999999999999999999999999999 66766777789999999999986
No 257
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.48 E-value=4.4e-08 Score=85.47 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=23.6
Q ss_pred cceEEEEEccCccccceeeEEeeeC--cccccccCCccccccccceeeeecceeeeCCe--EEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGECQSSHSISFSMPTKNRLNN--NVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~--~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~--~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+ .|...|.+|+| .++..+.+.+++. .+.+.|||++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~l~Dt~ 81 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG--------VEVVVAPVTIPDTTVSVELFLLDTA 81 (208)
T ss_dssp EEEEEEEC------------------------------------------CEEEECTTSSEEEEEEEEETT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccc--------eEEEEEEEEECCcccEEEEEEEECC
Confidence 4689999999999999999999999 89999999999 6777777888888 9999999986
No 258
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=3.2e-08 Score=85.79 Aligned_cols=60 Identities=37% Similarity=0.426 Sum_probs=54.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++++.+.|...+.||+| .++..+.+.+++..+.+.|||++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 80 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG--------ASFMTKTVPCGNELHKFLIWDTA 80 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS--------EEEEEEEEECSSSEEEEEEEEEC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc--------eeEEEEEEEeCCEEEEEEEEcCC
Confidence 4569999999999999999999999999999999999 77777778889999999999985
No 259
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=3.4e-08 Score=85.54 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=52.3
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...|.||++ .++. +.+.+++..+.++|||++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~D~~ 74 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF--------DHYA-VSVTVGGKQYLLGLYDTA 74 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC--------CCEE-EEEESSSCEEEEEEECCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------ceeE-EEEEECCEEEEEEEEECC
Confidence 3568999999999999999999999999999999999 5553 667789999999999975
No 260
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.46 E-value=4e-08 Score=85.84 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=54.4
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...|.+|+| .++....+.+++..+.+.|||++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 65 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--------ADFLTKEVMVDDRLVTMQIWDTA 65 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--------EEEEEEEEESSSCEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc--------ceEEEEEEEECCEEEEEEEEeCC
Confidence 3568999999999999999999999999999999999 77777788889999999999985
No 261
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.46 E-value=3.7e-08 Score=84.00 Aligned_cols=61 Identities=48% Similarity=0.571 Sum_probs=53.7
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+...+|++++|++++|||+|+++++.+.|...+.+|+| .++..+.+.+++..+.+.|||++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 69 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG--------AAFFSQTLAVNDATVKFEIWDTA 69 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC--------CSEEEEEEEETTEEEEEEEEECC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 34568999999999999999999999999999999999 66666777789999999999975
No 262
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.46 E-value=5e-08 Score=82.92 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=53.0
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...|.+|++ .++. +.+.+++..+.+.|||++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~~~Dt~ 65 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE--------DSYT-KICSVDGIPARLDILDTA 65 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcC--------ceEE-EEEEECCEEEEEEEEECC
Confidence 458999999999999999999999999999999999 7775 778889999999999975
No 263
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=3.4e-08 Score=87.68 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=46.6
Q ss_pred ccceEEEEEccCccccceeeEEeee--CcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~--~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|+++||||||++||+. ..|...+. |+| .++..+.+.++|..+.+.+||++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g--------~d~~~~~i~~~~~~~~l~~~Dt~ 95 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLG--------EDTYERTLMVDGESATIILLDMW 95 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CC--------TTEEEEEEEETTEEEEEEEECCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccc--------eeeEEEEEEECCeeeEEEEeecC
Confidence 4468999999999999999999985 44566664 578 56656778899999999999986
No 264
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.46 E-value=4.6e-08 Score=83.59 Aligned_cols=58 Identities=31% Similarity=0.408 Sum_probs=53.0
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...|.||++ ..+ .+.+.+++..+.++|||++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~l~Dt~ 62 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE--------NTF-TKLITVNGQEYHLQLVDTA 62 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCcc--------ccE-EEEEEECCEEEEEEEEeCC
Confidence 468999999999999999999999999999999999 677 4778889999999999975
No 265
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=9.7e-09 Score=88.98 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=56.2
Q ss_pred cccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 292 ~~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.+.+..+|++++|++++|||+|+++|+.+.|...+.+|+| .++..+.+.+++..+.++|||++-
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~G 81 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG--------IDFKVKTVYRHEKRVKLQIWDTAG 81 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--------TTEEEEEEEETTTTEEEEEECHHH
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--------eEEEEEEEEECCEEEEEEEEeCCC
Confidence 3446789999999999999999999999999999999999 666667777889999999999863
No 266
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.45 E-value=2.8e-08 Score=87.80 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=52.9
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCe----------EEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN----------NVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~----------~~~l~iw~~~ 362 (373)
.+..+|++++|++++|||+|+++|+.+.|...+.+|+| .+|..+.+.+++. .+.++|||++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~ 92 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG--------IDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTA 92 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEE--------EEEEEEEEEEEC-------CCEEEEEEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCcee--------EEEEEEEEEECCccccccccCceeEEEEEEECC
Confidence 35579999999999999999999999999999999999 6776667777777 8999999985
No 267
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.45 E-value=5.5e-08 Score=81.80 Aligned_cols=59 Identities=34% Similarity=0.419 Sum_probs=53.7
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...+.||+| .++..+.+.+++..+.+.|||++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Dt~ 63 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--------ASFMTKTVQYQNELHKFLIWDTA 63 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee--------EEEEEEEEEECCeEEEEEEEcCC
Confidence 458999999999999999999999999999999999 77776777889999999999974
No 268
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.44 E-value=4.4e-08 Score=86.91 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=55.1
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++++|||||+++|+.+.|...|.+|+| .++....+.+++..+.+.|||++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~i~Dt~ 72 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLVFHTNRGPIKFNVWDTA 72 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT--------EEEEEEEEEETTEEEEEEEEEEC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--------eeEEEEEEEECCEEEEEEEEeCC
Confidence 34569999999999999999999999999999999999 77777778889999999999975
No 269
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.43 E-value=5e-07 Score=85.95 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=61.7
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.|+||+|...- .......+|.+++++|....+..+.+... + ...|
T Consensus 148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i--------------------------~~~~ 195 (337)
T 2qm8_A 148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---I--------------------------FELA 195 (337)
T ss_dssp CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---H--------------------------HHHC
T ss_pred CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---H--------------------------hccc
Confidence 45789999996432 12345789999999998654321111100 0 1234
Q ss_pred EEEEEeCCCCCCCCcccCHHHHHHHHHHc----------CCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 170 IALAGNKADLPTSRRCVEYSEGEAYAEEN----------GLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~----------~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
.++|.||+|+... ........+++.... ..+++.+||+++.|++++++.|.+...
T Consensus 196 ~ivvlNK~Dl~~~-~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 196 DMIAVNKADDGDG-ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp SEEEEECCSTTCC-HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEEchhccCc-hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5777799997542 111111223332211 346889999999999999999887654
No 270
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.43 E-value=5.4e-08 Score=84.23 Aligned_cols=50 Identities=52% Similarity=0.719 Sum_probs=42.4
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeE
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNN 353 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~ 353 (373)
..+|++++|++++|||||+++++.+.|...+.||+| .++..+.+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~ 55 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG--------ASFCTYVVNLNDIN 55 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--------CEEEEEEEETTC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccc--------ceeEEEEEEecCcc
Confidence 468999999999999999999999999999999999 66666666677766
No 271
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=6.6e-08 Score=82.32 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=52.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++++.+.|. ..+.||+| .++....+.+++..+.++|||++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~Dt~ 68 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG--------IDFRNKVLDVDGVKVKLQMWDTA 68 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCS--------CEEEEEEEEETTEEEEEEEEECC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCcee--------eEEEEEEEEECCEEEEEEEEeCC
Confidence 45689999999999999999999999885 57899999 67766667789999999999975
No 272
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.42 E-value=5.9e-08 Score=81.34 Aligned_cols=57 Identities=33% Similarity=0.470 Sum_probs=51.5
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|...|.||++ .++. +.+.+++..+.+.|||++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~D~~ 59 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--------DSYR-KQVEVDCQQCMLEILDTA 59 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE--------EEEE-EEEESSSCEEEEEEEEEC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--------ceEE-EEEEECCEEEEEEEEECC
Confidence 48999999999999999999999999999999999 6664 677789999999999975
No 273
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.42 E-value=2.7e-08 Score=85.75 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=36.2
Q ss_pred ceEEEEEccCccccceeeEEeeeC--cccccccCCccccccccceeeeecceeee---CCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGECQSSHSISFSMPTKNR---LNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~--~f~~~~~~Tig~~~~~~~~~~~~~~~~~v---~~~~~~l~iw~~~ 362 (373)
.+|++++|++|||||||+++|+.. .|...|.||+| ++|....+.+ ++..+.++|||++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g--------~~~~~~~~~~~~~~~~~~~~~i~Dt~ 64 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVG--------IDVKDWPIQIRDKRKRDLVLNVWDFA 64 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CS--------EEEEEEEC---------CEEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceecc--------EEeEEeeeccccCCCCceEEEEEecC
Confidence 479999999999999999999984 68888999999 6665444443 4678999999986
No 274
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.42 E-value=6.5e-08 Score=85.54 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=45.2
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
..+|++++|++++|||+|+++|+.+.|...|.||++ ..+. +.+.+++..+.+.|||++-
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~l~Dt~G 91 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF--------ERYM-VNLQVKGKPVHLHIWDTAG 91 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCC--------EEEE-EEEEETTEEEEEEEEEC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc--------eeEE-EEEEECCEEEEEEEEECCC
Confidence 358999999999999999999999999999999998 6664 6788899999999999863
No 275
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=7.3e-08 Score=83.72 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=52.3
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...|.||++ .++. +.+.+++..+.++|||++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~ 84 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE--------STYR-HQATIDDEVVSMEILDTA 84 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCC--------ceEE-EEEEECCEEEEEEEEECC
Confidence 458999999999999999999999999999999999 6664 667889999999999975
No 276
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.41 E-value=6.8e-08 Score=82.58 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=51.4
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|...|.+|++ ..+. ..+.+++..+.++|||++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 61 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNYS-ANVMVDGKPVNLGLWDTA 61 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC--------CEEE-EEEEETTEEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc--------ceeE-EEEEECCEEEEEEEEECC
Confidence 58999999999999999999999999999999998 5553 667789999999999975
No 277
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.41 E-value=7.4e-08 Score=82.82 Aligned_cols=60 Identities=27% Similarity=0.428 Sum_probs=51.6
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeee-cceeeeCCe---------EEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFS-MPTKNRLNN---------NVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~-~~~~~v~~~---------~~~l~iw~~~ 362 (373)
+..+|++++|++++|||+|+++++.+.|...+.||+| .+|. .+.+.+++. .+.+.|||++
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 78 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG--------IDFREKRVVYRANGPDGAVGRGQRIHLQLWDTA 78 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--------EEEEEEEEEECTTSCCCSSCCCEEEEEEEEEEC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccc--------eeeeeEEEEEecCCcccccccCcEEEEEEEeCC
Confidence 4568999999999999999999999999999999999 6665 455666766 8999999974
No 278
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.41 E-value=3.1e-08 Score=85.51 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=50.6
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccc-----------cCCccccccccceeeeeccee-eeCCeEEEEEehhh
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ-----------ESTIGGECQSSHSISFSMPTK-NRLNNNVPITFVWV 361 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~-----------~~Tig~~~~~~~~~~~~~~~~-~v~~~~~~l~iw~~ 361 (373)
....+|++++|++++|||+|+ +++.+.|...| .||+| .++..+.+ .+++..+.++|||+
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLF--------FDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEE--------EEECCSSCCCSSSCEEEEEEEEC
T ss_pred cccccEEEEECCCCCCHHHHH-HHHHhhcccccccccccccccccccee--------eeecccccccccCCceEEEEEeC
Confidence 345799999999999999999 78888888774 56888 77776667 78999999999997
Q ss_pred H
Q psy18160 362 I 362 (373)
Q Consensus 362 ~ 362 (373)
+
T Consensus 82 ~ 82 (198)
T 3t1o_A 82 P 82 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 279
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.40 E-value=7.6e-08 Score=84.45 Aligned_cols=59 Identities=34% Similarity=0.521 Sum_probs=53.0
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...+.||+| .++....+.+++..+.+.|||++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~Dt~ 77 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--------IDFKIKTVDINGKKVKLQLWDTA 77 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCS--------CCEEEEEEEETTEEEEEEEECCT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc--------ceEEEEEEEECCEEEEEEEEeCC
Confidence 458999999999999999999999999999999999 67766777889999999999985
No 280
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.39 E-value=9.8e-08 Score=81.57 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=52.1
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...|.+|++ ..+. +.+.+++..+.+.|||++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~ 74 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEEVQIDILDTA 74 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccc--------eEEE-EEEEECCEEEEEEEEECC
Confidence 3468999999999999999999999999999999999 6664 667789999999999975
No 281
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.39 E-value=1e-07 Score=83.10 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=52.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...|.+|++ ..+. ..+.+++..+.+.|||++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~ 70 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEEVQIDILDTA 70 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--------eEEE-EEEEECCEEEEEEEEcCC
Confidence 3468999999999999999999999999999999999 6664 677789999999999975
No 282
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.38 E-value=1.2e-07 Score=82.93 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=51.5
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|++++..+.|...|.||++ .++. ..+.+++..+.++|||++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~l~i~Dt~ 81 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--------ENYI-ADIEVDGKQVELALWDTA 81 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSC--------CCCE-EEEEETTEEEEEEEECCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCccc--------ceEE-EEEEECCEEEEEEEEECC
Confidence 468999999999999999999999999999999999 5554 456789999999999975
No 283
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.38 E-value=1e-07 Score=82.14 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=52.4
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++|+|||||+++++.+.|...+.+|++ ..+. +.+.+++..+.+.|||++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~ 77 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--------DSYR-KQVVIDGETCLLDILDTA 77 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc--------eEEE-EEEEECCEEEEEEEEECC
Confidence 34568999999999999999999999999999999998 5664 677889999999999975
No 284
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.38 E-value=1.1e-07 Score=79.52 Aligned_cols=57 Identities=30% Similarity=0.422 Sum_probs=51.3
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|...+.+|++ ..+ .+.+.+++..+.+.|||++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~l~D~~ 59 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE--------DFY-RKEIEVDSSPSVLEILDTA 59 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc--------eeE-EEEEEECCEEEEEEEEECC
Confidence 48999999999999999999999999999999998 445 4778889999999999975
No 285
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.38 E-value=8.2e-08 Score=84.32 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=45.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...|.||++ .++. ..+.+++..+.+.|||++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 81 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVF--------ENYV-ADIEVDGKQVELALWDTA 81 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------C--------CEEE-EEEEETTEEEEEEEEECT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCccc--------ceEE-EEEEECCEEEEEEEEECC
Confidence 3468999999999999999999999999999999999 6664 557789999999999985
No 286
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.37 E-value=6.2e-08 Score=84.62 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=49.1
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...|.+|++ .++ .+.+.+++..+.+.|||++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~l~Dt~ 80 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE--------NTY-SKIVTLGKDEFHLHLVDTA 80 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSE--------EEE-EEEEC----CEEEEEEEEC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccc--------eEE-EEEEEECCEEEEEEEEECC
Confidence 3468999999999999999999999999999999999 667 4777788999999999975
No 287
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.35 E-value=7.4e-08 Score=83.80 Aligned_cols=58 Identities=26% Similarity=0.305 Sum_probs=45.0
Q ss_pred cceEEEEEccCccccceeeEEeee--CcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~--~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|+++||||||+++|++ ..|...+. ++| .++..+.+.++|..+.+.+||++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~l~~~Dt~ 64 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLG--------EDTYERTLMVDGESATIILLDMW 64 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGC--------TTEEEEEEEETTEEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccc--------eeEEEEEEEECCeEEEEEEEEec
Confidence 358999999999999999999985 45666664 577 56556778889999999999985
No 288
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.35 E-value=6e-08 Score=82.53 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=48.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...+.||+| .++..+.+.++ +..+.+.|||++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~Dt~ 66 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG--------ADFLTKEVTVDGDKVATMQVWDTA 66 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CC--------CSCEEEEECCSSSCCEEEEEECCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccc--------eEEEEEEEEEcCCcEEEEEEEECC
Confidence 3468999999999999999999999999999999999 56655666677 778999999986
No 289
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.35 E-value=1.4e-07 Score=78.94 Aligned_cols=57 Identities=28% Similarity=0.347 Sum_probs=51.3
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|++++..+.|...+.+|++ .++. ..+.+++..+.+.|||++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~D~~ 60 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA--------DSYR-KKVVLDGEEVQIDILDTA 60 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcc--------eEEE-EEEEECCEEEEEEEEECC
Confidence 48999999999999999999999999999999999 5664 667789999999999975
No 290
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.34 E-value=3.5e-08 Score=84.24 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=35.9
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...|.||++ ..+. ..+.+++..+.++|||++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~i~Dt~ 64 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF--------DNFS-ANVVVNGATVNLGLWDTA 64 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------CB-CCCC-------CEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeee--------eeEE-EEEEECCEEEEEEEEECC
Confidence 358999999999999999999999999999999999 5554 556778999999999975
No 291
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=1.4e-07 Score=81.70 Aligned_cols=58 Identities=31% Similarity=0.473 Sum_probs=51.5
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...|.||++ ..+. +.+.+++..+.+.|||++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~ 64 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE--------DTYR-QVISCDKSVCTLQITDTT 64 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccc--------ccee-EEEEECCEEEEEEEEeCC
Confidence 458999999999999999999999999999999999 5554 566789999999999985
No 292
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.33 E-value=2.7e-07 Score=89.28 Aligned_cols=81 Identities=9% Similarity=-0.047 Sum_probs=46.9
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEECCE---------------EEEEEEEeCCCcccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQERY 103 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e~~ 103 (373)
..+++++|. |||||+|++++..+... |++... ..+.+++. ...+++|||+|..++
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~--g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNE--SRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSE--EEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCcee--EEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 357888886 99999999998865332 444333 34455442 235899999998875
Q ss_pred cc-------cchhhccCCcEEEEEEECCCHhhH
Q psy18160 104 HT-------LAPMYYRNAQAAIIVYDITNQDTF 129 (373)
Q Consensus 104 ~~-------l~~~~~~~ad~iilv~D~~~~~Sf 129 (373)
.+ .+..+++++|++++|+|+++..++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC------
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 54 345678999999999999865443
No 293
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.66 E-value=7.1e-08 Score=84.39 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=52.1
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++|+.+.|...+.+|++ ..+ ...+.+++..+.++|||++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNY-SANVMVDGKPVNLGLWDTA 86 (204)
Confidence 3468999999999999999999999999999999998 555 3667788999999999986
No 294
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.31 E-value=1.3e-07 Score=82.87 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=49.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++|+.+.|...+.+|++ ..+ ...+.+++..+.++|||++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNY-SANVMVDGKPVNLGLWDTA 86 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE--------EEE-EEEEECC-CEEEEEEEEEC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec--------cee-EEEEEECCEEEEEEEEECC
Confidence 4468999999999999999999999999999999998 445 4778889999999999975
No 295
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=2.1e-07 Score=78.19 Aligned_cols=57 Identities=30% Similarity=0.469 Sum_probs=50.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|...+.||++ ..+. +.+.+++..+.+.|||++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~~~Dt~ 59 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE--------DTYR-QVISCDKSICTLQITDTT 59 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--------ccEE-EEEEECCEEEEEEEEECC
Confidence 48999999999999999999999999999999999 5554 566788999999999975
No 296
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.29 E-value=2.2e-07 Score=79.54 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=51.5
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...|.+|++ ..+ ...+.+++..+.++|||++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~-~~~~~~~~~~~~~~i~Dt~ 60 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE--------DSY-RKQVVIDGETCLLDILDTA 60 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC--------EEE-EEEEEETTEEEEEEEEECC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch--------heE-EEEEEECCcEEEEEEEECC
Confidence 358999999999999999999999999999999998 444 3777889999999999974
No 297
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.26 E-value=1.8e-07 Score=78.70 Aligned_cols=58 Identities=24% Similarity=0.142 Sum_probs=41.3
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++...+...+.++.+ .++..+.+.+++..+.+.|||++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~D~~ 59 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--------EDTYERRIMVDKEEVTLIVYDIW 59 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------------CEEEEEEEETTEEEEEEEECCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCc--------CCeeeEEEEECCeEEEEEEEECC
Confidence 37999999999999999999998888877777777 56666778889999999999975
No 298
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.26 E-value=2e-07 Score=78.78 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=45.3
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|...+ +|+| .++..+.+.+++..+.+.|||++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~D~~ 60 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLG--------EDVYERTLTVDGEDTTLVVVDTW 60 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSS--------SSEEEEEEEETTEEEEEEEECCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-Cccc--------cceeEEEEEECCEEEEEEEEecC
Confidence 3589999999999999999999998887665 4678 55555677789999999999986
No 299
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.26 E-value=4.7e-06 Score=80.61 Aligned_cols=77 Identities=12% Similarity=0.029 Sum_probs=52.1
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc------ceeeeEEEEEEEECCE---------------EEEEEEEeCCCccc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY------LFSAAFITQTVCLDDV---------------TIRFEIWDTAGQER 102 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~------Tig~~~~~~~i~~~~~---------------~v~l~i~Dt~G~e~ 102 (373)
-.+++++|. |||||+|++++...... |+..+ ...+.+++. ...+.+||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~--~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE--EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT--EEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce--eeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 357888887 99999999999765221 33333 334555541 13588999999643
Q ss_pred c-------cccchhhccCCcEEEEEEECCC
Q psy18160 103 Y-------HTLAPMYYRNAQAAIIVYDITN 125 (373)
Q Consensus 103 ~-------~~l~~~~~~~ad~iilv~D~~~ 125 (373)
. .......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 2233445789999999999864
No 300
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.24 E-value=3.2e-07 Score=80.92 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=48.7
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-CCeEEEEEehhhH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-LNNNVPITFVWVI 362 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-~~~~~~l~iw~~~ 362 (373)
.....+|++++|++++|||+|+++++.+.|...+.+|+| .++....+.. ++..+.+.|||++
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG--------AVNHPVTFLDDQGNVIKFNVWDTA 69 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTT--------EEEEEEEEEBTTSCEEEEEEEEEC
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--------eeeEEEEEEeCCCcEEEEEEEecC
Confidence 344579999999999999999999999999999999999 4544333333 3556999999985
No 301
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.23 E-value=3.3e-07 Score=76.27 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=50.7
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++|+|||+|++++..+.|...+.+|++ ..+. +.+.+++..+.+.|||+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~D~~ 59 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE--------DSYR-KQVVIDGETCLLDILDTA 59 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC--------EEEE-EEEEETTEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc--------eEEE-EEEEECCEEEEEEEEECC
Confidence 47999999999999999999999999999999998 5553 677789999999999974
No 302
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.22 E-value=1.6e-07 Score=81.33 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+....+|++++|++++|||+|+++|+.+.|.. .|.||+| ..+. . +++..+.++|||++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--------~~~~--~--~~~~~~~~~i~Dt~ 71 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--------YNVE--T--FEKGRVAFTVFDMG 71 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--------EEEE--E--EEETTEEEEEEEEC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--------eeEE--E--EEeCCEEEEEEECC
Confidence 34556899999999999999999999999999 8999999 3332 2 35677899999975
No 303
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.21 E-value=1.9e-07 Score=80.57 Aligned_cols=56 Identities=27% Similarity=0.326 Sum_probs=46.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+.|...+.||+| .++. . ++...+.+.|||++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~--~--~~~~~~~~~l~Dt~ 75 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--------FNMR--K--ITKGNVTIKLWDIG 75 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--------EEEE--E--EEETTEEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCc--------eeEE--E--EEeCCEEEEEEECC
Confidence 3468999999999999999999999999999999999 5543 2 23446889999975
No 304
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.17 E-value=1.2e-07 Score=86.48 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=44.2
Q ss_pred ccceEEEEEccC---------ccccceeeEEeee---CcccccccCCc-cccccccceeeee-------cceeeeCCeEE
Q psy18160 295 ICQYKLVLLGES---------AVGKSSLVLRFVR---GQFHEYQESTI-GGECQSSHSISFS-------MPTKNRLNNNV 354 (373)
Q Consensus 295 ~~~~k~~~iG~~---------~vGks~l~~~~~~---~~f~~~~~~Ti-g~~~~~~~~~~~~-------~~~~~v~~~~~ 354 (373)
...+|++++|++ +||||||++||+. +.|...|.||+ |.+|..+. +.+. ...+.+++..+
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRV-VNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTT-TTTCSEEEEEEEC---------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeE-eecccccccccccccccCCcEE
Confidence 456999999999 9999999999998 77888888987 86665544 2211 01122688999
Q ss_pred EEEehh
Q psy18160 355 PITFVW 360 (373)
Q Consensus 355 ~l~iw~ 360 (373)
.++|||
T Consensus 96 ~l~i~D 101 (255)
T 3c5h_A 96 KMHIVE 101 (255)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 999999
No 305
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.13 E-value=4.6e-07 Score=78.14 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=45.3
Q ss_pred ccceEEEEEccCccccceeeEEeeeCc-ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|++++|||+|+++++.+. |...+.+|+| .. .+.+.+++ +.+.|||++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--------~~--~~~~~~~~--~~~~l~Dt~ 75 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--------FS--IEKFKSSS--LSFTVFDMS 75 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--------EE--EEEEECSS--CEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--------ee--EEEEEECC--EEEEEEECC
Confidence 456899999999999999999999888 7888999998 32 24555665 688999985
No 306
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.08 E-value=4.7e-07 Score=77.47 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=43.8
Q ss_pred cccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
....+|++++|++++|||+|+++++.+.| ..+.+|+|. .+ +.+.+++ +.+.|||++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~--------~~--~~~~~~~--~~~~i~Dt~ 73 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS--------NV--EEIVINN--TRFLMWDIG 73 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSS--------SC--EEEEETT--EEEEEEEES
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCce--------ee--EEEEECC--EEEEEEECC
Confidence 34568999999999999999999999988 678899992 22 3444555 889999975
No 307
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.06 E-value=8.3e-07 Score=74.30 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=40.2
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.+|++++|++++|||+|++++....+. .+.+|.| ..+. +.+.+++..+.+.|||++-
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~i~D~~g 58 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAG--------HTYD-RSIVVDGEEASLMVYDIWE 58 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------CEEE-EEEEETTEEEEEEEEECC-
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccc--------cceE-EEEEECCEEEEEEEEECCC
Confidence 479999999999999999999866554 4567888 5553 6778899999999999863
No 308
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.05 E-value=1.2e-06 Score=82.31 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=51.7
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|...|.+|++ ..+. +.+.+++..+.++|||++
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~--------~~~~-~~~~~~~~~~~~~l~Dt~ 211 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--------DNYS-ANVMVDGKPVNLGLWDTA 211 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE--------EEEE-EEEEETTEEEEEEEEEEC
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc--------ceeE-EEEEECCEEEEEEEEeCC
Confidence 48999999999999999999999999999999998 5664 777889999999999975
No 309
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.01 E-value=8.8e-07 Score=77.84 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=44.9
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCe-EEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN-NVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~-~~~l~iw~~~ 362 (373)
..+|++++|++++|||||+++|+.+.|...|.+|. .++. .+.+++. .+.++|||++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~i~Dt~ 62 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT---------DSSA--IYKVNNNRGNSLTLIDLP 62 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS---------CEEE--EEECSSTTCCEEEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc---------eeeE--EEEecCCCccEEEEEECC
Confidence 45899999999999999999999999999887554 3443 2666765 7999999975
No 310
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.99 E-value=1.1e-06 Score=75.61 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=43.9
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|. .+.||+|. + .+.+.+++ +.++|||++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--------~--~~~~~~~~--~~~~i~Dt~ 68 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--------N--VEEIVINN--TRFLMWDIG 68 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--------S--CEEEEETT--EEEEEEECC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--------c--eEEEEECC--EEEEEEECC
Confidence 3589999999999999999999999888 78899982 2 23444554 889999985
No 311
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.97 E-value=1.4e-06 Score=73.51 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=39.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++|+|||||++++.+..+...+.|+++ +++....+.+++ ..++|||++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t--------~~~~~~~~~~~~--~~l~i~Dt~ 58 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT--------VEKKEGEFEYNG--EKFKVVDLP 58 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----C--------CCCCEEEEEETT--EEEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcc--------eeeeEEEEEECC--cEEEEEECC
Confidence 37899999999999999999998877666667776 344334455555 579999985
No 312
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.95 E-value=1.5e-06 Score=75.69 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=39.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++|+|||+|++++..+.|. .|.||+| .+ ...+.+++ +.++|||++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~--------~~--~~~~~~~~--~~l~i~Dt~ 77 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--------PT--SEELTIAG--MTFTTFDLG 77 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCC--------CS--CEEEEETT--EEEEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCC--------ce--eEEEEECC--EEEEEEECC
Confidence 479999999999999999999998885 5889998 32 24566677 889999985
No 313
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.94 E-value=1.7e-06 Score=73.19 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|...+.++++ .++....+.+++.. +.|||++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~l~Dt~ 63 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGIT--------QHIGAYQVTVNDKK--ITFLDTP 63 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSS--------TTCCCCEEEETTEE--EEESCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCcee--------EeeeEEEEEeCCce--EEEEECC
Confidence 57999999999999999999999999998888888 44544556667764 5699975
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.94 E-value=2e-06 Score=73.62 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=44.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++|+|||||+++++...+...+.|+++ .++....+.+++ ..++|||++
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t--------~~~~~~~~~~~~--~~~~l~Dt~ 62 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT--------VEKKEGEFEYNG--EKFKVVDLP 62 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSC--------CEEEEEEEEETT--EEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCee--------ccceEEEEEeCC--cEEEEEECC
Confidence 58999999999999999999998777666667777 455545555665 678999975
No 315
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.93 E-value=1.7e-06 Score=73.65 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=43.7
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
..+|++++|++++|||||+++++.+.| ..+.||+| ... ..+.+++ +.+.|||++-
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--------~~~--~~~~~~~--~~~~i~Dt~G 71 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--------FNV--ETLSYKN--LKLNVWDLGG 71 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--------CCE--EEEEETT--EEEEEEEEC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--------cce--EEEEECC--EEEEEEECCC
Confidence 458999999999999999999999988 67889999 222 3344444 8899999863
No 316
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.92 E-value=9.8e-07 Score=83.15 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=39.0
Q ss_pred EEEEEccCccccceeeEEeeeCcccc---cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~---~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
|++++|++|||||||+.++..+.+.. .+.||+| ++|. . + +..++|+|||+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig--------~~~~--~--v-~~~v~LqIWDTA 54 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSN--------PSLE--H--F-STLIDLAVMELP 54 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCS--------CCCE--E--E-CSSSCEEEEECC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeee--------eeeE--E--E-ccEEEEEEEECC
Confidence 68999999999999998876554433 3789999 5553 1 2 345899999987
No 317
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.89 E-value=1.3e-06 Score=72.85 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=40.7
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+|++++|++++|||+|+++++.+.|.. +.||+| ... +.+ +...+.++|||++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--------~~~--~~~--~~~~~~~~i~Dt~ 52 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--------FNV--ETV--EYKNISFTVWDVG 52 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--------CCE--EEE--ECSSCEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--------eeE--EEE--EECCEEEEEEEcC
Confidence 589999999999999999999888875 688998 211 222 2345789999985
No 318
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.88 E-value=1.7e-06 Score=74.10 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=43.1
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|++++..+.| ..+.||+| .. .+.+.++ .+.++|||++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--------~~--~~~~~~~--~~~l~i~Dt~ 68 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--------FN--IKSVQSQ--GFKLNVWDIG 68 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--------EE--EEEEEET--TEEEEEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--------eE--EEEEEEC--CEEEEEEECC
Confidence 358999999999999999999998865 45789999 32 2455555 4789999986
No 319
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.88 E-value=3.3e-06 Score=72.20 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=43.9
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+. ...+.||+| ... +.+.++ .+.++|||++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--------~~~--~~~~~~--~~~~~~~Dt~ 70 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--------FNI--KTLEHR--GFKLNIWDVG 70 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--------EEE--EEEEET--TEEEEEEEEC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--------cce--EEEEEC--CEEEEEEECC
Confidence 45899999999999999999999888 778999998 332 345454 4788999985
No 320
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.87 E-value=1.1e-06 Score=76.34 Aligned_cols=59 Identities=15% Similarity=0.011 Sum_probs=40.7
Q ss_pred ccccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceee--e-CCeEEEEEehhhH
Q psy18160 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKN--R-LNNNVPITFVWVI 362 (373)
Q Consensus 293 ~~~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~--v-~~~~~~l~iw~~~ 362 (373)
.+...+|++++|++++|||+|++++. +.|... +|+|.+ +..+.+. + ++..+.++|||++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~l~i~Dt~ 77 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLE--------STNKIYKDDISNSSFVNFQIWDFP 77 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCC--------CCCSCEEEEECCTTSCCEEEEECC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeec--------cccceeeeeccCCCeeEEEEEECC
Confidence 34557899999999999999988554 455544 678844 4333333 2 3788999999986
No 321
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.87 E-value=2.6e-06 Score=73.68 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=43.8
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||||++++..+.|. .|.||+| .+ ...+.+++ +.++|||++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~--------~~--~~~~~~~~--~~~~i~Dt~ 75 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--------PT--SEELAIGN--IKFTTFDLG 75 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCS--------CE--EEEEEETT--EEEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCC--------CC--eEEEEECC--EEEEEEECC
Confidence 479999999999999999999998885 5789998 33 25666777 889999985
No 322
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.86 E-value=2.5e-06 Score=78.49 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=41.3
Q ss_pred ccceEEEEEccCccccceeeEE-eeeCcccccc-------cCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLR-FVRGQFHEYQ-------ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~-~~~~~f~~~~-------~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...++++++|.+|+|||||+++ +..+.|...| .+|++ +++....+..+|..+.|.|||++
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~~l~liDTp 73 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--------VEQSKVLIKEGGVQLLLTIVDTP 73 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CC--------CEEEEEEECC--CCEEEEEEECC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceE--------EEEEEEEEecCCeEEEEEEEECC
Confidence 3568999999999999999999 4456677777 78998 66665666678889999999986
No 323
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.86 E-value=2.9e-06 Score=71.17 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=42.8
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+.|. .+.||+| ..+ +.+.++ .+.+.|||++
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--------~~~--~~~~~~--~~~~~~~Dt~ 59 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--------FNV--ETVTYK--NLKFQVWDLG 59 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--------EEE--EEEEET--TEEEEEEEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--------cce--EEEEEC--CEEEEEEECC
Confidence 489999999999999999999998886 4788998 333 344455 5789999975
No 324
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.83 E-value=2.9e-06 Score=73.44 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=42.8
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++++.+.|.. +.||+| ... +.+.. ..+.+.|||++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--------~~~--~~~~~--~~~~~~i~Dt~ 81 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--------FNV--ETVEY--KNICFTVWDVG 81 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--------EEE--EEEEE--TTEEEEEEECC
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--------eeE--EEEEE--CCEEEEEEECC
Confidence 35899999999999999999999998874 688998 222 33333 34889999986
No 325
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.81 E-value=4.5e-06 Score=78.20 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=44.5
Q ss_pred ceEEEEEccCccccceeeEEeeeC--cccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRG--QFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~--~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++++|||+|+++++.+ .+.. .+.+|++ .++. .+.+++ .+.++|||++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--------~~~~--~~~~~~-~~~l~i~Dt~ 60 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--------VEHS--HLRFLG-NMTLNLWDCG 60 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--------EEEE--EEEETT-TEEEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--------eEEE--EEEeCC-ceEEEEEECC
Confidence 589999999999999999998877 5553 6899999 6664 344455 7899999985
No 326
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.79 E-value=3.5e-06 Score=72.34 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=42.6
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|++++..+.|.. +.||+| ... +.+.++ .+.++|||++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--------~~~--~~~~~~--~~~~~~~Dt~ 74 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--------VNL--ETLQYK--NISFEVWDLG 74 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--------CCE--EEEEET--TEEEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--------eEE--EEEEEC--CEEEEEEECC
Confidence 35899999999999999999999988865 788998 222 334444 5788999975
No 327
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.63 E-value=6.1e-06 Score=83.29 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=39.1
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|.+++|||||+++++.+.|...+.||+|.++.++..-+...-.+..++..+.+.|||++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~ 106 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFG 106 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECC
Confidence 34689999999999999999999999999999999995444322000001112234568999999986
No 328
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.57 E-value=1.4e-05 Score=75.59 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=43.5
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++++|||+|+++|..+.|...+ ||++ .++. . ++...+.++|||++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~--------~~~~--~--~~~~~~~l~i~Dt~ 217 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--------FNVE--T--VEYKNISFTVWDVG 217 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT--------EEEE--E--EEETTEEEEEEECC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc--------eEEE--E--EecCcEEEEEEECC
Confidence 4589999999999999999999999987765 7998 4442 2 33355789999986
No 329
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.55 E-value=8.8e-06 Score=70.00 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=33.5
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
..+|++++|++|+|||||+++++.+.|...+.++.|.++. .....+++ .+.|||++-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--------~~~~~~~~---~~~l~Dt~G 78 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT--------LNFYIIND---ELHFVDVPG 78 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CC--------EEEEEETT---TEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceee--------EEEEEECC---cEEEEECCC
Confidence 3589999999999999999999999888888888884333 22223344 589999863
No 330
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.51 E-value=1.9e-05 Score=66.95 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=40.7
Q ss_pred ceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++|+|||||+++++...+ ...+. ++. .++....+.+++.+ ++|||++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-~~t--------~~~~~~~~~~~~~~--~~l~Dt~ 60 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTT--------RDVLREHIHIDGMP--LHIIDTA 60 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCC--------CSCEEEEEEETTEE--EEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-Cce--------eceeeEEEEECCeE--EEEEECC
Confidence 47999999999999999999997764 23333 334 34555667778754 7899975
No 331
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.50 E-value=7e-06 Score=78.99 Aligned_cols=135 Identities=12% Similarity=0.052 Sum_probs=75.8
Q ss_pred EEEEEcC---ChhHHHHHhhhC-----c-CcCc-ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc--------hhh
Q psy18160 49 AQIWLKD---RVDCMTQIVINV-----V-FYPY-LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA--------PMY 110 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~-----~-~~~~-Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~--------~~~ 110 (373)
.++++|. |||||+|++++. . .... ..|.+.....+.+++. +.++||||......+. ..+
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 5778886 999999999986 2 2222 3333333344555433 6899999964332111 112
Q ss_pred c--cCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCcccCH
Q psy18160 111 Y--RNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEY 188 (373)
Q Consensus 111 ~--~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v~~ 188 (373)
+ +..+.++++.+.....-+..+.+ ++ .....+.|++++.||.|.... ....
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-l~------------------------~l~~~~~~~~~v~~k~d~~~~--~~~~ 293 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-LD------------------------YIKGGRRSFVCYMANELTVHR--TKLE 293 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-EE------------------------EEESSSEEEEEEECTTSCEEE--EEGG
T ss_pred hcccccCceEEEEcCCceEEECCEEE-EE------------------------EccCCCceEEEEecCCccccc--ccHH
Confidence 2 67899999998742211001100 00 012346899999999998653 1222
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCH
Q psy18160 189 SEGEAYAEENGLLFMETSAKTAMNV 213 (373)
Q Consensus 189 ~e~~~~~~~~~~~~~evSak~~~gI 213 (373)
.....+.+..|......++....++
T Consensus 294 ~~~~~~~~~~g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 294 KADSLYANQLGELLSPPSKRYAAEF 318 (369)
T ss_dssp GHHHHHHHHBTTTBCSSCGGGTTTC
T ss_pred HHHHHHHHhcCCccCCCCchhhhhc
Confidence 2233455666766666666544443
No 332
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.44 E-value=2.5e-05 Score=64.61 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=36.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccc-cccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.|++++|++++|||+|++++..+.+.. ...+++. .++....+.+++. .+.|||++-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~l~Dt~G 58 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVT--------RDLKEGVVETDRG--RFLLVDTGG 58 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------------CCEEEEEEETTE--EEEEEECGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCce--------ecceEEEEEeCCc--eEEEEECCC
Confidence 589999999999999999999877532 2223333 3444455556665 678999863
No 333
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.40 E-value=1.9e-05 Score=67.39 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=30.9
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig 331 (373)
+|++++|++++|||||+++++.+.|...+.|++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t 35 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT 35 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc
Confidence 6899999999999999999999999888888665
No 334
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.40 E-value=8.3e-05 Score=74.16 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=60.7
Q ss_pred EEEEEEeCCCcccccc-cchh---h--ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160 90 IRFEIWDTAGQERYHT-LAPM---Y--YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM 163 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~-l~~~---~--~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
+.+.|+||+|...... +... . +..+|.+++|+|....... ......+..
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~---------------------- 238 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD---------------------- 238 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----------------------
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----------------------
Confidence 4688999999753221 1111 1 2278999999999775431 111222222
Q ss_pred CCCCCeE-EEEEeCCCCCCCCcccCHHHHHHHHHHcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q psy18160 164 APPNIVI-ALAGNKADLPTSRRCVEYSEGEAYAEENGLLF------------------METSAKTAMN-VNEIFVEIAKK 223 (373)
Q Consensus 164 ~~~~~pi-ilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~------------------~evSak~~~g-I~~lf~~L~~~ 223 (373)
.+|+ .+|.||.|.... . ..+.......+.|+ +.+|+..|.| ++++++++.+.
T Consensus 239 ---~~~i~gvVlNK~D~~~~---~--g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 239 ---KVDVASVIVTKLDGHAK---G--GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ---HHCCCCEEEECTTSCCC---C--THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ---hcCceEEEEeCCccccc---h--HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1464 899999998642 1 11223334445443 3468999999 99999888654
No 335
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.35 E-value=4.7e-05 Score=67.56 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=37.9
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
..+|++++|++++|||||+++++.+.|.....+... .++....+..+ .+.+.|||++-
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t--------~~~~~~~~~~~--~~~~~l~DtpG 85 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTT--------KNLYVGHFDHK--LNKYQIIDTPG 85 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-------------CEEEEEEEET--TEEEEEEECTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcc--------eeeeeeeeecC--CCeEEEEECCC
Confidence 458999999999999999999999887533222211 12221222233 36799999863
No 336
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.35 E-value=3.6e-05 Score=73.72 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=38.3
Q ss_pred ccceEEEEEccCccccceeeEEe-eeCccccccc--------CCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRF-VRGQFHEYQE--------STIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM 364 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~-~~~~f~~~~~--------~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~ 364 (373)
...++++++|++|+|||||++++ ..+.|...+. +|++ +++....+..++..+.|.|||++-.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~--------~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQ--------IEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEE--------EEEEEEC----CEEEEEEEEC----
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCcee--------EEEEEEEeecCCcccceEEEEeccc
Confidence 45689999999999999999994 4566666553 6777 5554444556788999999998754
No 337
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.34 E-value=3.9e-05 Score=68.76 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=39.2
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
...+|++++|.+|+|||||++++++..+.....++.+++ .++....+.+++. .+.|||++-
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t------~~~~~~~~~~~~~--~i~liDTpG 87 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSIT------KKCEKRSSSWKET--ELVVVDTPG 87 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------C------CSCEEEEEEETTE--EEEEEECCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCcee------eeEEEEEEEeCCc--eEEEEECCC
Confidence 346899999999999999999999888766655532211 2232234445564 568999863
No 338
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.33 E-value=3.7e-05 Score=76.69 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=43.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...+|++++|.+++|||+|+++++.+.|.. +.||+| .++. .+ +...+.+.|||++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~--------~~~~--~~--~~~~~~~~l~Dt~ 374 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--------FNVE--TV--TYKNVKFNVWDVG 374 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--------EEEE--EE--ESSSCEEEEEEEC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccc--------eeEE--EE--EeCCEEEEEEECC
Confidence 346899999999999999999999988765 568999 4443 23 3345789999986
No 339
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.27 E-value=9.6e-06 Score=77.98 Aligned_cols=129 Identities=9% Similarity=0.055 Sum_probs=70.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcC------c--ceeeeEEEEEEEECCEEEEEEEEeCCCcccccccc----hh---
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYP------Y--LFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLA----PM--- 109 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~------~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~~~~l~----~~--- 109 (373)
..++++|. |||||+|++++..... . ..|.+.....+.+++. +.++||||......+. ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 35778886 9999999999863211 1 3444443444555443 7899999974332211 11
Q ss_pred -h--ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCCCCccc
Q psy18160 110 -Y--YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186 (373)
Q Consensus 110 -~--~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~~v 186 (373)
+ .+..+.+++++|.....-+..+.+ + . .......|++++.||.|.... .
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~------------------d---~l~~~~~~~~~v~nk~d~~~~---~ 289 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----F------------------D---YVSGGRRAFTCHFSNRLTIHR---T 289 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----E------------------E---EEESSSEEEEEEECTTSCEEE---E
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----E------------------E---EecCCCceEEEEecCcccccc---c
Confidence 1 256788888887632110001000 0 0 012346899999999998653 2
Q ss_pred CHHHHHH-HHHHcCCeEEEEcC
Q psy18160 187 EYSEGEA-YAEENGLLFMETSA 207 (373)
Q Consensus 187 ~~~e~~~-~~~~~~~~~~evSa 207 (373)
..+.+.+ +.+..|......++
T Consensus 290 ~~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 290 KLEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp EHHHHHHHHHHHBTTTBCSSCH
T ss_pred cHHHHHHHHHHHhCCccCCCch
Confidence 3344444 44556655544444
No 340
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.22 E-value=6.4e-05 Score=68.80 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=44.4
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++|+|||||++++++..+...+.|+++ +++....+..++.. +.|||+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t--------~~~~~~~~~~~~~~--~~l~Dtp 58 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVT--------VEKKEGIMEYREKE--FLVVDLP 58 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSS--------CEEEEEEEEETTEE--EEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeE--------EEeeEEEEEECCce--EEEEeCC
Confidence 47899999999999999999998888666777777 55554555566654 8899974
No 341
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.22 E-value=0.00028 Score=68.76 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=30.9
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc-----ceeeeEEEEEEEEC--CEEEEEEEEeCCCc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY-----LFSAAFITQTVCLD--DVTIRFEIWDTAGQ 100 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~-----Tig~~~~~~~i~~~--~~~v~l~i~Dt~G~ 100 (373)
.+.++++|. |||||++.+++..+... +.+.......+... +-...+.++|++|.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 345888886 99999999998754332 12222211112222 22336889999775
No 342
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.22 E-value=7.3e-05 Score=68.11 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=40.0
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+|++++|++|+|||||++++++..+.....|.+. ++.....+.. ....+.|||++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~t--------v~~~~~~~~~--~~~~~~l~Dtp 60 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVT--------VEKKEGVFTY--KGYTINLIDLP 60 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSC--------CEEEEEEEEE--TTEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCce--------EEEEEEEEEE--CCeEEEEEECC
Confidence 358999999999999999999998777544445444 3332222323 34789999974
No 343
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.21 E-value=1.6e-05 Score=70.31 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=48.1
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeee------cceeeeC-CeEEEEEehhhHHHH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFS------MPTKNRL-NNNVPITFVWVIMMI 365 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~------~~~~~v~-~~~~~l~iw~~~~~~ 365 (373)
.++++++|.+|+|||||+++|+...|...+.+||+.+|... .|.. .+.+.++ +..+.+++||+.+.+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~--~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAK--FDAERMEKHGAKVVPLNTGKECHLDAHLVGHAL 111 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTH--HHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCC--ccHHHHHhcCCcEEEecCCceEeccHHHHHHHH
Confidence 47999999999999999999998888888889999555410 0100 2344454 555678899985543
No 344
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.20 E-value=0.0043 Score=60.23 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=81.1
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc---cee-eeEEEEEEEE-CCEEEEEEEEeCCCcccccccchhh-----ccCC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY---LFS-AAFITQTVCL-DDVTIRFEIWDTAGQERYHTLAPMY-----YRNA 114 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~---Tig-~~~~~~~i~~-~~~~v~l~i~Dt~G~e~~~~l~~~~-----~~~a 114 (373)
..++++|. |||||+|.+.+-..... +++ .+.....+.+ ....-.+.+||++|..........+ +...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 47888887 99999999998533222 111 1110000111 1111147889998853222112222 3344
Q ss_pred cEEEEEEECC--CHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeEEEEEeCCCCCC------CCccc
Q psy18160 115 QAAIIVYDIT--NQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPT------SRRCV 186 (373)
Q Consensus 115 d~iilv~D~~--~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~------~~~~v 186 (373)
+.+++ +|.. .+.... +...+.. .+.|+++|.||.|+.- .....
T Consensus 150 ~~~~~-lS~G~~~kqrv~----la~aL~~------------------------~~~p~~lV~tkpdlllLDEPtsgLD~~ 200 (413)
T 1tq4_A 150 DFFII-ISATRFKKNDID----IAKAISM------------------------MKKEFYFVRTKVDSDITNEADGEPQTF 200 (413)
T ss_dssp SEEEE-EESSCCCHHHHH----HHHHHHH------------------------TTCEEEEEECCHHHHHHHHHTTCCTTC
T ss_pred CCeEE-eCCCCccHHHHH----HHHHHHh------------------------cCCCeEEEEecCcccccCcccccCCHH
Confidence 55555 7775 322111 2222222 3579999999999630 00112
Q ss_pred CHHHH----HHHH----HHcC---CeEEEEcC--CCCCCHHHHHHHHHHHcchh
Q psy18160 187 EYSEG----EAYA----EENG---LLFMETSA--KTAMNVNEIFVEIAKKLPKK 227 (373)
Q Consensus 187 ~~~e~----~~~~----~~~~---~~~~evSa--k~~~gI~~lf~~L~~~i~~~ 227 (373)
..++. .++. .+.+ -..+.+|+ .++.|++++.+.+.+.+...
T Consensus 201 ~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 201 DKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 23332 2332 1222 25788999 67778999999999888653
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.17 E-value=2.2e-05 Score=68.92 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=32.6
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccc---cccCCccccc
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGEC 334 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~---~~~~Tig~~~ 334 (373)
..+|++++|++|+|||+|++++..+.|.. .+.||++.+|
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~ 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence 45899999999999999999999988765 4778887443
No 346
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.12 E-value=5.6e-05 Score=68.35 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=35.3
Q ss_pred ccceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...++++++|.+|+|||||+++++...+.....++.|.+.. .....+..++ ..+.|||++
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~------~~~~~~~~~~--~~i~liDTP 78 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRA------CTTGSRRWDK--CHVEVVDTP 78 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCS------CEEEEEEETT--EEEEEEECC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCcccc------EEEEEEEECC--cEEEEEECC
Confidence 34689999999999999999999987765433333332111 1112223344 567899976
No 347
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.11 E-value=8.5e-05 Score=67.61 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=42.5
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+++++|.+|+|||||++++++..+.....|++. +++....+..++. .+.|||++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~T--------v~~~~~~~~~~~~--~~~lvDtp 56 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVT--------VEKKTGEFLLGEH--LIEITDLP 56 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSS--------SEEEEEEEEETTE--EEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCce--------EEEEEEEEEECCe--EEEEEeCC
Confidence 4789999999999999999998876555556666 4555555666665 78899975
No 348
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.06 E-value=0.00013 Score=62.27 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=30.3
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCcccc
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~ 333 (373)
..+|++++|++++|||||+++++.+. ...+.+|.|.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t 58 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKT 58 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCc
Confidence 45799999999999999999999887 34566777733
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.05 E-value=2.4e-05 Score=67.20 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=25.2
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccc---cccCCcc
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIG 331 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~---~~~~Tig 331 (373)
..++++++|++|+|||||++++..+.|.. .+.||++
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~ 85 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA 85 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee
Confidence 35799999999999999999999887755 4666776
No 350
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.00 E-value=7.4e-05 Score=68.68 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=37.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCc-ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.+|++++|++|+|||||++++++.. +...| | |++ +..+...++. .+.++|||++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~-p--g~t--------v~~~~~~~~~-~~~l~l~Dtp 57 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNW-P--GVT--------VERKSGLVKK-NKDLEIQDLP 57 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS-S--CCC--------CSCEEEECTT-CTTEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC-C--CCc--------EEEEEEEEec-CCeEEEEECC
Confidence 4799999999999999999999765 44444 3 322 2223333454 6678999975
No 351
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.97 E-value=0.00017 Score=65.38 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=41.6
Q ss_pred cceEEEEEccCccccceeeEEeeeCc-ccccccCC-ccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQEST-IGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~-f~~~~~~T-ig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
..++++++|.+|+|||||+++++... |...+.++ +. .+.....+..++. .+.|||+.-
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t--------~~~~~~~~~~~~~--~i~iiDTpG 80 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLT--------KTCSKSQGSWGNR--EIVIIDTPD 80 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCC--------CSCEEEEEEETTE--EEEEEECCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcee--------eeeEEEEEEeCCC--EEEEEECcC
Confidence 45899999999999999999999876 66666665 44 2232234445554 578898763
No 352
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.93 E-value=0.00011 Score=63.88 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=22.3
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCcccc
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~ 333 (373)
..+++++|++|+|||||++++++..|...+.||.|..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~ 62 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc
Confidence 4689999999999999999999888777778888843
No 353
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.91 E-value=7.9e-05 Score=65.49 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=38.2
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeC-CeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRL-NNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~-~~~~~l~iw~~~ 362 (373)
.++++++|.+|+|||||+++++.+.+.....++.|.+.. . ....+. .....+.|||++
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~----~----~~~~~~~~~~~~~~l~Dtp 87 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH----I----NYFSVGPAAEPVAHLVDLP 87 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCC----E----EEEEESCTTSCSEEEEECC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccc----e----EEEEecCCCCCcEEEEcCC
Confidence 479999999999999999999988643333344442111 1 112223 344678899986
No 354
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.89 E-value=0.00018 Score=66.09 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=41.9
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
.++++++|.+|+|||||++++++..+...+.|++. ++.....+..++. .+.|||++
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t--------~~~~~~~~~~~~~--~~~liDtp 58 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT--------VERKEGQFSTTDH--QVTLVDLP 58 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSS--------SEEEEEEEECSSC--EEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCee--------EEEEEEEEEeCCC--ceEEEECc
Confidence 47999999999999999999998877655566665 4444455555554 46679975
No 355
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.87 E-value=0.00012 Score=68.19 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=32.5
Q ss_pred ccceEEEEEccCccccceeeEEeeeC-cccccc--------cCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRG-QFHEYQ--------ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM 364 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~-~f~~~~--------~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~ 364 (373)
+..++++++|++|+|||||++++... .|...+ .+|++ .++....+..++..+.|++||.+.+
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~--------~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ--------IEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC--------------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcce--------EeeEEEEecCCCcccCcchhhhhhh
Confidence 45689999999999999999996653 565544 23333 2221122234677889999999864
No 356
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.77 E-value=0.0003 Score=63.96 Aligned_cols=56 Identities=20% Similarity=0.119 Sum_probs=38.3
Q ss_pred cceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..++++++|.+++|||||+++++...+ ...+.+|.- +.....+..++. .+.|||++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~---------~~~~~~~~~~~~--~l~liDTp 92 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGL---------RPVMVSRTMGGF--TINIIDTP 92 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CC---------CCEEEEEEETTE--EEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcce---------eeEEEEEEECCe--eEEEEECC
Confidence 358999999999999999999998764 344444321 122233344554 88999975
No 357
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.65 E-value=0.00026 Score=64.66 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=38.6
Q ss_pred cceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..++++++|.+|+|||||+++++...+.. ..++.|.++. ...+.++.....+.|||++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~--------~~~~~~~~~~~~l~iiDTp 95 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPR--------PVMVSRSRAGFTLNIIDTP 95 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSS--------CEEEEEEETTEEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCccee--------eEEEEEeeCCeEEEEEECC
Confidence 35899999999999999999999876532 1223332222 1222334445679999975
No 358
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.65 E-value=0.00047 Score=68.34 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=32.1
Q ss_pred ceEEEEEccCccccceeeEEeeeCc--ccccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQ--FHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~--f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.+|++++|.+|+|||||+++++... +...+.+| . .++....+.++|. .+.|||++-
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gt-T--------~d~~~~~i~~~g~--~l~liDT~G 290 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGT-T--------RDYIEECFIHDKT--MFRLTDTAG 290 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---------------------------CEEEEETTE--EEEEEC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-e--------EEEEEEEEEECCe--EEEEEECCC
Confidence 4889999999999999999999875 34444433 3 4555566677774 689999874
No 359
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.59 E-value=0.00075 Score=65.88 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=36.4
Q ss_pred ccceEEEEEccCccccceeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
...++++++|..++|||||+++++...+. ....+.+. .+...+.+.+++.. .+.|||++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT--------~d~~~~~~~~~~~~-~l~liDTp 91 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT--------TDPVYKSMELHPIG-PVTLVDTP 91 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC---------------------CCCCEEEEEETTTE-EEEEEECS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCee--------eeeEEEEEEECCCC-eEEEEECc
Confidence 34689999999999999999999988773 22222233 33434555555542 78999986
No 360
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.58 E-value=0.0006 Score=62.19 Aligned_cols=52 Identities=12% Similarity=-0.054 Sum_probs=33.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCccc
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQER 102 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e~ 102 (373)
++++++|. |||||+|++.+...... ++|.+.....+.++. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 58888887 99999999998876544 555544333344433 478999999754
No 361
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.54 E-value=0.00054 Score=66.74 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=38.8
Q ss_pred cccceEEEEEccCccccceeeEEeeeCccc-ccc-------cCCccccccccceeeeecceeeeCCeEEEEEehhhHHH
Q psy18160 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQ-------ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMM 364 (373)
Q Consensus 294 ~~~~~k~~~iG~~~vGks~l~~~~~~~~f~-~~~-------~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~ 364 (373)
++..++++++|++|+|||||++.+++..+. ..+ .+|++ .++....+..++....+.+||.+.+
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~--------~~~i~~v~q~~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--------VEQSKVLIKEGGVQLLLTIVDTPGF 98 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE--------EEEEECC------CEEEEEEECC--
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee--------eeeEEEEEecCCcccceeeeechhh
Confidence 345689999999999999999999887663 222 34444 3433233344567789999999854
No 362
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.45 E-value=0.01 Score=54.21 Aligned_cols=22 Identities=0% Similarity=0.037 Sum_probs=18.3
Q ss_pred EEEEEEcC---ChhHHHHHhhhCcC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINVVF 69 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~~~ 69 (373)
+.++++|. |||||++.+++...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56888886 99999999997643
No 363
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.38 E-value=0.00046 Score=68.51 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=42.0
Q ss_pred eEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
+|++++|.+++|||||+++++...+ ...+..|. .|+....+.++|. .+.|||++-
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT---------~d~~~~~i~~~g~--~~~l~DTaG 300 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT---------RDVISEEIVIRGI--LFRIVDTAG 300 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS---------SCSCCEEEEETTE--EEEEEESSC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCee---------eeeEEEEEecCCe--EEEEEECCC
Confidence 7999999999999999999997753 45555443 3555566777775 478999873
No 364
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.37 E-value=0.0029 Score=58.26 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=33.0
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQE 101 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e 101 (373)
..++++++|. |||||+|++.+...... +.|.+.....+.++. .+.+|||||.-
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 4578899997 99999999998764443 445444333444443 47899999964
No 365
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.21 E-value=0.00057 Score=67.51 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=39.7
Q ss_pred ceEEEEEccCccccceeeEEeeeCcc--cccccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQF--HEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.+|++++|.+|+|||||+++++...+ ...+ |++. .++....+.++|.+ +.|||++-
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT--------~d~~~~~i~~~g~~--v~liDT~G 281 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTT--------RDVVESQLVVGGIP--VQVLDTAG 281 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCC--------HHHHHHEEEETTEE--EEECC---
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCee--------EEEEEEEEEECCEE--EEEEECCc
Confidence 47899999999999999999997654 3344 4444 45555666777754 58999875
No 366
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.02 E-value=0.00079 Score=64.26 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=37.6
Q ss_pred eEEEEEccCccccceeeEEeeeCccc-ccc-cCCccccccccceeeeecceeeeCCe---------------EEEEEehh
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFH-EYQ-ESTIGGECQSSHSISFSMPTKNRLNN---------------NVPITFVW 360 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~-~~~-~~Tig~~~~~~~~~~~~~~~~~v~~~---------------~~~l~iw~ 360 (373)
+++.++|.+++|||||+++++...+. ..| .+|++. + ...+.+++. +..++|||
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p--------~--~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvD 72 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP--------N--TGVVPMPDPRLDALAEIVKPERILPTTMEFVD 72 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC--------C--SSEEECCCHHHHHHHHHHCCSEEECCEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc--------e--EEEEecCCcccceeeeeecccceeeeEEEEEE
Confidence 68999999999999999999987643 233 235551 1 123444553 26899999
Q ss_pred hHHH
Q psy18160 361 VIMM 364 (373)
Q Consensus 361 ~~~~ 364 (373)
++-.
T Consensus 73 tpGl 76 (363)
T 1jal_A 73 IAGL 76 (363)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9744
No 367
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.88 E-value=0.00086 Score=64.71 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=34.3
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCe---------------EEEEEehhh
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNN---------------NVPITFVWV 361 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~---------------~~~l~iw~~ 361 (373)
.+++.++|.+|+|||||+++++...+.....|+.. ++.....+.+.+. ...++|||+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tT--------i~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCT--------IDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC---------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccc--------cCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 36899999999999999999998766433333333 2222234444443 346999999
Q ss_pred HHHH
Q psy18160 362 IMMI 365 (373)
Q Consensus 362 ~~~~ 365 (373)
+-+.
T Consensus 94 pGl~ 97 (396)
T 2ohf_A 94 AGLV 97 (396)
T ss_dssp CC--
T ss_pred CCcc
Confidence 8554
No 368
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.88 E-value=0.0016 Score=60.63 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=36.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccc-ccc-CCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHE-YQE-STIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~-~~~-~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+++++|.+|+|||||++++++..+.. ... .|.. +.. ..+ +.....++.|||++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr---------~~i-~~i-~~~~~~~l~l~DTp 63 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR---------KRL-RGI-LTEGRRQIVFVDTP 63 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC---------SCE-EEE-EEETTEEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee---------EEE-EEE-EEeCCcEEEEecCc
Confidence 4679999999999999999999887742 222 2322 111 111 22345788999986
No 369
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.67 E-value=0.0063 Score=59.51 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=53.5
Q ss_pred EEEEEEeCCCcccccc-----cch-hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160 90 IRFEIWDTAGQERYHT-----LAP-MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM 163 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~-----l~~-~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
+.+.|+||+|...... +.. .....+|.+++|.|.+....... ....+..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~---------------------- 237 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKE---------------------- 237 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHH----------------------
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHh----------------------
Confidence 5678999999533221 111 11235799999999876433222 2222222
Q ss_pred CCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q psy18160 164 APPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVN 214 (373)
Q Consensus 164 ~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~ 214 (373)
.-.+..||.||.|.... ...+.......+.|+..++. |++++
T Consensus 238 --~~~i~gVIlTKlD~~~~-----gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 238 --ATPIGSIIVTKLDGSAK-----GGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp --SCTTEEEEEECCSSCSS-----HHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred --hCCCeEEEEECCCCccc-----ccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 12245789999997542 33455566677888877775 55443
No 370
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.64 E-value=0.0018 Score=61.99 Aligned_cols=54 Identities=19% Similarity=0.036 Sum_probs=35.1
Q ss_pred eE-EEEEccCccccceeeEEeeeCcccc--cccCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 298 YK-LVLLGESAVGKSSLVLRFVRGQFHE--YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 298 ~k-~~~iG~~~vGks~l~~~~~~~~f~~--~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
++ ++++|.+|+|||||++++++..+.. ...+|+ |+....+.++|. .+.+||.+-
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~----------d~~~~~i~~~g~--~v~l~DT~G 235 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM----------SPKRYAIPINNR--KIMLVDTVG 235 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------C----------CSCEEEEEETTE--EEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCccccc----------CCEEEEEEECCE--EEEEEeCCC
Confidence 44 8899999999999999999876632 233443 344466777884 568899753
No 371
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.32 E-value=0.0035 Score=58.40 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.8
Q ss_pred cceEEEEEccCccccceeeEEeeeCccc
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQFH 323 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~f~ 323 (373)
..-++.++|.+|+|||||++++++..+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 4568999999999999999999988775
No 372
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.14 E-value=0.0049 Score=59.56 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.5
Q ss_pred eEEEEEccCccccceeeEEeeeCc
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQ 321 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~ 321 (373)
+|+.++|.+++|||||+++++...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 478999999999999999998765
No 373
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.05 E-value=0.0013 Score=65.24 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.8
Q ss_pred ccceEEEEEccCccccceeeEEeeeC
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRG 320 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~ 320 (373)
...+|++++|.+++|||||+++++..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999998754
No 374
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.92 E-value=0.0024 Score=58.60 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.6
Q ss_pred ceEEEEEccCccccceeeEEeeeCccc
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFH 323 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~ 323 (373)
..+++++|++++|||||++++++..|.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 468999999999999999999988874
No 375
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.84 E-value=0.0012 Score=65.26 Aligned_cols=94 Identities=10% Similarity=0.016 Sum_probs=55.7
Q ss_pred cEEEEEEcC---ChhHHHHHhhhCcCcCc--ceeeeEEEEEEEECCEEEEEEEEeCCCcc--cccccc--------hhhc
Q psy18160 47 CMAQIWLKD---RVDCMTQIVINVVFYPY--LFSAAFITQTVCLDDVTIRFEIWDTAGQE--RYHTLA--------PMYY 111 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~~~~~~~~--Tig~~~~~~~i~~~~~~v~l~i~Dt~G~e--~~~~l~--------~~~~ 111 (373)
...++++|- ||||+.+++...-.... |.+...........+......+||..|.+ +....+ ..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l 118 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL 118 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777775 99999999986532211 22111000000011122335689999973 233333 5567
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHHh
Q psy18160 112 RNAQAAIIVYDITNQDTFGRAKSWVKELQR 141 (373)
Q Consensus 112 ~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~ 141 (373)
..+++.++|+|.++. +++....|+..+..
T Consensus 119 ~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 119 SEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 678899999999987 56666777776655
No 376
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=94.79 E-value=0.011 Score=57.93 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=21.7
Q ss_pred ccceEEEEEccCccccceeeEEeee
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~ 319 (373)
...++++++|..++|||||+++++.
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHH
Confidence 3468999999999999999999843
No 377
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.78 E-value=0.0011 Score=66.50 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=42.0
Q ss_pred eEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeee-CCeEEEEEehhhH
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNR-LNNNVPITFVWVI 362 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v-~~~~~~l~iw~~~ 362 (373)
.+++++|.+++|||||++++....|...+.+++. .++....+.. ++. ++.|||+.
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT--------~~i~~~~v~~~~g~--~i~~iDTP 60 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGIT--------QHIGAFLVSLPSGE--KITFLDTP 60 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBC--------CCTTSCCBCSSCSS--CCBCEECS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCcee--------EEEeEEEEEeCCCC--EEEEEECC
Confidence 5789999999999999999999988888888888 3443333333 233 67889974
No 378
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.74 E-value=0.0088 Score=57.88 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=28.3
Q ss_pred cceEEEEEccCccccceeeEEee---eCcccccccC--Ccccccccc
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGECQSS 337 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~---~~~f~~~~~~--Tig~~~~~~ 337 (373)
..++++++|..++|||||++++. .+.+..++.+ |++..|...
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~ 53 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADC 53 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccc
Confidence 46899999999999999999997 3456666666 888655543
No 379
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.69 E-value=0.0074 Score=57.30 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=35.9
Q ss_pred ceEEEEEccCccccceeeEEeeeCccccc-c-cCCccccccccceeeeecceeeeCCeEEEEEehhhHH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEY-Q-ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIM 363 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~-~-~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~ 363 (373)
.++++++|.+|+|||||++++....+... + ..|.+ ... ..+..+ ...+.|||++-
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~--------~~~--~~~~~~--~~~~~l~Dt~G 223 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRG--------INV--GQFEDG--YFRYQIIDTPG 223 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSC--------EEE--EEEEET--TEEEEEEECTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeec--------eeE--EEEEec--CceEEEEeCCC
Confidence 46899999999999999999998765322 2 22332 111 122222 45789999763
No 380
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.67 E-value=0.025 Score=55.13 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=53.8
Q ss_pred EEEEEEeCCCccc--ccc-cch---hh--ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160 90 IRFEIWDTAGQER--YHT-LAP---MY--YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQ 161 (373)
Q Consensus 90 v~l~i~Dt~G~e~--~~~-l~~---~~--~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
+.+.|+||+|... ... +.. .. ....|.+++|.|......... ....+..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~-------------------- 236 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQ-------------------- 236 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHH--------------------
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhc--------------------
Confidence 4567999999643 111 111 11 125689999999876433222 2222222
Q ss_pred hcCCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q psy18160 162 RMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNV 213 (373)
Q Consensus 162 ~~~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI 213 (373)
.-.+..||.||.|... ....+.......+.|+..++. |+++
T Consensus 237 ----~~~~~gVIlTKlD~~a-----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 237 ----ASPIGSVIITKMDGTA-----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----HCSSEEEEEECGGGCS-----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----ccCCcEEEEecccccc-----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 1135678999999743 234566667778999888886 6555
No 381
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.48 E-value=0.0015 Score=62.51 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=38.9
Q ss_pred eEEEEEccCccccceeeEEeeeCcc-cc-----cccCCccccccccceeeeecceeeeCC-----eEEEEEehhhHHHHh
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQF-HE-----YQESTIGGECQSSHSISFSMPTKNRLN-----NNVPITFVWVIMMIF 366 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f-~~-----~~~~Tig~~~~~~~~~~~~~~~~~v~~-----~~~~l~iw~~~~~~~ 366 (373)
+++.++|.+|+|||||+++++.... .. ...|++|.......-+++..+.+..++ ....++|||++-.+-
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5789999999999999999886532 12 245666621000000001011111222 356899999985543
No 382
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.39 E-value=0.0043 Score=58.88 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=23.9
Q ss_pred eEEEEEccCccccceeeEEeeeCccc
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFH 323 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~ 323 (373)
.+++++|++++|||||++++++..|.
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 68999999999999999999988874
No 383
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.08 E-value=0.19 Score=48.94 Aligned_cols=84 Identities=19% Similarity=0.077 Sum_probs=49.1
Q ss_pred EEEEEEeCCCcccccc-cch---h--hccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhc
Q psy18160 90 IRFEIWDTAGQERYHT-LAP---M--YYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRM 163 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~-l~~---~--~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
+.+.|+||+|...... +.. . .+..+|.+++|.|.+.... .......+.
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----------------------- 234 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----------------------- 234 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH-----------------------
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh-----------------------
Confidence 4578999999653211 111 1 1236899999999865432 111122221
Q ss_pred CCCCC-e-EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q psy18160 164 APPNI-V-IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETS 206 (373)
Q Consensus 164 ~~~~~-p-iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evS 206 (373)
... | ..+|.||.|.... ...+..+....+.++..++
T Consensus 235 --~~~~~i~gvVlnK~D~~~~-----~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 235 --EAVGEIGSIIVTKLDGSAK-----GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp --TTSCSCEEEEEECSSSCST-----THHHHHHHHHSSCCEEEEC
T ss_pred --hcccCCeEEEEeCCCCccc-----hHHHHHHHHHHCCCEEEee
Confidence 123 4 8899999997432 2234456677788876665
No 384
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=93.99 E-value=0.018 Score=55.64 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=32.0
Q ss_pred ccceEEEEEccCccccceeeEEee---eCcccccccC--Ccccccccc
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGECQSS 337 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~---~~~f~~~~~~--Tig~~~~~~ 337 (373)
...++++++|..++|||||+++++ .+.+..++.+ |+...|...
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~ 55 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA 55 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeee
Confidence 346899999999999999999998 3456666666 888555533
No 385
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.97 E-value=0.01 Score=57.18 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=40.5
Q ss_pred ceEEEEEccCccccceeeEEeeeCcc-cccccCCccccccccceeeeecceeeeCCe---------------EEEEEehh
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIGGECQSSHSISFSMPTKNRLNN---------------NVPITFVW 360 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~---------------~~~l~iw~ 360 (373)
..++.++|.+|+|||||++.+++..+ .....|+.. ++.....+.+.|. ...+.+||
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tT--------i~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT--------IDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCC--------CCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCcee--------ecceeeeeeeCCcchhhhhhhcccccccCcceEEEe
Confidence 36889999999999999999998655 333333322 2333334445542 13689999
Q ss_pred hHHHHh
Q psy18160 361 VIMMIF 366 (373)
Q Consensus 361 ~~~~~~ 366 (373)
++-+.-
T Consensus 92 ~pGl~~ 97 (392)
T 1ni3_A 92 IAGLTK 97 (392)
T ss_dssp TGGGCC
T ss_pred cccccc
Confidence 986543
No 386
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=93.66 E-value=0.017 Score=57.25 Aligned_cols=54 Identities=24% Similarity=0.201 Sum_probs=33.0
Q ss_pred cceEEEEEccCccccceeeEEeeeCc-------cccccc--CCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQ-------FHEYQE--STIGGECQSSHSISFSMPTKNRLNNNVPITFVWV 361 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~-------f~~~~~--~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~ 361 (373)
..++++++|..++|||||+++++... +..++. .|+. .....+..++ ..+.|||.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~----------~~~~~~~~~~--~~i~iiDt 80 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID----------IGFSAFKLEN--YRITLVDA 80 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC------------------------------CCCEEEETT--EEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEe----------cceEEEEECC--EEEEEEEC
Confidence 45899999999999999999998665 333333 3444 2222333454 67899996
No 387
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=93.44 E-value=0.021 Score=53.98 Aligned_cols=57 Identities=16% Similarity=0.064 Sum_probs=37.6
Q ss_pred EEEEEccCccccceeeEEeeeCccc-ccc-cCCccccccccceeeeecceeeeCCeEEEEEehhhHHHHh
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFH-EYQ-ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIF 366 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~-~~~-~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~~~ 366 (373)
+++++|.+++|||||+++++...+. ..| .+|+. ..+ ..+.+++ ...+.|||+.-.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~--------p~~--g~v~~~~-~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV--------PNL--GMVETDD-GRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCC--------CCE--EEEECSS-SCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccC--------ceE--EEEEeCC-CceEEEecCCCCcc
Confidence 5789999999999999999876532 233 24443 111 2234444 24789999987654
No 388
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.77 E-value=0.02 Score=52.94 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.2
Q ss_pred eEEEEEccCccccceeeEEeeeCccc
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQFH 323 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f~ 323 (373)
.++.++|.+|+|||||++++++..+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~ 34 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKIS 34 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 57899999999999999999987663
No 389
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=92.52 E-value=0.01 Score=57.30 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=22.0
Q ss_pred cceEEEEEccCccccceeeEEeee
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~ 319 (373)
..++++++|..++|||||+++++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHh
Confidence 458999999999999999999986
No 390
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.52 E-value=0.087 Score=53.34 Aligned_cols=55 Identities=7% Similarity=-0.172 Sum_probs=33.4
Q ss_pred CcEEEEEEcC---ChhHHHHHhhhCcCc--Cc------ceeeeEEEEEEEE-CCEEEEEEEEeCCCccc
Q psy18160 46 DCMAQIWLKD---RVDCMTQIVINVVFY--PY------LFSAAFITQTVCL-DDVTIRFEIWDTAGQER 102 (373)
Q Consensus 46 ~~i~ivvlG~---GKTsLl~rl~~~~~~--~~------Tig~~~~~~~i~~-~~~~v~l~i~Dt~G~e~ 102 (373)
..+.++++|. |||||+|++++.... .. |.|.... ...+ ......+.++||+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence 4567788886 999999999988632 11 3332211 1111 11223578999999753
No 391
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=92.22 E-value=0.015 Score=59.32 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.5
Q ss_pred cceEEEEEccCccccceeeEEeeeC
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRG 320 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~ 320 (373)
..+|++++|.+++|||||+++++..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHh
Confidence 4689999999999999999999854
No 392
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=92.21 E-value=0.018 Score=57.72 Aligned_cols=59 Identities=10% Similarity=0.150 Sum_probs=35.8
Q ss_pred cceEEEEEccCccccceeeEEeeeC--ccc----------------c--cccCCccccccccceeeeecceeeeCCeEEE
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRG--QFH----------------E--YQESTIGGECQSSHSISFSMPTKNRLNNNVP 355 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~--~f~----------------~--~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~ 355 (373)
...+++++|.+++|||||+++++.. .+. . ....+.| +.+....+.++.....
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rG--------iTi~~~~~~~~~~~~~ 83 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRG--------ISITTSVMQFPYHDCL 83 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------------CCTTEEEEEETTEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCC--------cceeeeEEEEEECCeE
Confidence 3579999999999999999998852 220 0 1223445 3444444555556688
Q ss_pred EEehhhH
Q psy18160 356 ITFVWVI 362 (373)
Q Consensus 356 l~iw~~~ 362 (373)
+.|||++
T Consensus 84 i~liDTP 90 (529)
T 2h5e_A 84 VNLLDTP 90 (529)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999974
No 393
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=92.11 E-value=0.02 Score=59.14 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=38.8
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCc--cc---cccc---cceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI--GG---ECQS---SHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Ti--g~---~~~~---~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+++++|..++|||||+.+++...+......+| |. ++.. ...+.+..+...+....+.++|||.+
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp 82 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP 82 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence 4688999999999999999998544332222222 00 0000 00023333444455567899999964
No 394
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=92.00 E-value=0.022 Score=57.95 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.4
Q ss_pred ccceEEEEEccCccccceeeEEee
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~ 318 (373)
...++++++|..++|||||+++++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll 198 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIM 198 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHH
Confidence 346899999999999999999985
No 395
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=91.83 E-value=0.038 Score=56.18 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=29.9
Q ss_pred ceEEEEEccCccccceeeEEeeeC--ccc-----cc------ccCCccccccccceeeeecceeee-----CCeEEEEEe
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRG--QFH-----EY------QESTIGGECQSSHSISFSMPTKNR-----LNNNVPITF 358 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~--~f~-----~~------~~~Tig~~~~~~~~~~~~~~~~~v-----~~~~~~l~i 358 (373)
..+++++|..++|||||+.+++.. .+. .. ...+.| +.+..+.+.+ +|..+.++|
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerG--------iTi~~~~~~~~~~~~~g~~~~l~l 75 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERG--------ITIKAQSVTLDYKASDGETYQLNF 75 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC----------------------------------CEEEEEEECTTSCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhccc--------ceeeeeEEEEEEecCCCCeEEEEE
Confidence 468999999999999999998752 221 11 122345 2332233333 678899999
Q ss_pred hhhH
Q psy18160 359 VWVI 362 (373)
Q Consensus 359 w~~~ 362 (373)
||+.
T Consensus 76 iDTP 79 (599)
T 3cb4_D 76 IDTP 79 (599)
T ss_dssp EECC
T ss_pred EECC
Confidence 9964
No 396
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=91.59 E-value=0.013 Score=58.22 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=37.9
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
..+++++|..++|||||++++....+...+.+++. .+.....+..++. .+.|||+.
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT--------~~i~~~~v~~~~~--~i~~iDTP 59 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGIT--------QHIGAYHVETENG--MITFLDTP 59 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCC--------CCSSCCCCCTTSS--CCCEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCee--------EeEEEEEEEECCE--EEEEEECC
Confidence 35789999999999999999988777665554444 2222222333443 57889864
No 397
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=91.49 E-value=0.2 Score=50.91 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=17.4
Q ss_pred EEEEEcC---ChhHHHHHhhhCcCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVVFY 70 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~~~ 70 (373)
.++++|+ |||||++.+++-...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4888887 999999999987433
No 398
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=91.47 E-value=0.038 Score=58.52 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.9
Q ss_pred cceEEEEEccCccccceeeEEeeeC
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRG 320 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~ 320 (373)
...|++++|..++|||||+++++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998753
No 399
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=91.45 E-value=0.025 Score=54.59 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.5
Q ss_pred cceEEEEEccCccccceeeEEeeeC
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRG 320 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~ 320 (373)
..++++++|..++|||||+++++..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 4689999999999999999999864
No 400
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=91.29 E-value=0.012 Score=58.96 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=20.7
Q ss_pred cceEEEEEccCccccceeeEEee
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~ 318 (373)
...+++++|.+++|||||+++++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999999996
No 401
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=91.05 E-value=0.22 Score=48.69 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=35.4
Q ss_pred CCcEEEEEEcC---ChhHHHHHhhhC------------------cCcCc------ceeeeEEEEEEEE---CCEEEEEEE
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVINV------------------VFYPY------LFSAAFITQTVCL---DDVTIRFEI 94 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~~~------------------~~~~~------Tig~~~~~~~i~~---~~~~v~l~i 94 (373)
..+..+.|+|. |||+|+|++++. .|... |.|+-.....+.. ++..+.+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34566777776 999999999863 33322 4443222111111 445678999
Q ss_pred EeCCCcc
Q psy18160 95 WDTAGQE 101 (373)
Q Consensus 95 ~Dt~G~e 101 (373)
.||+|..
T Consensus 145 lDTeG~~ 151 (447)
T 3q5d_A 145 MDTQGTF 151 (447)
T ss_dssp EEEECCC
T ss_pred EcCCccc
Confidence 9999964
No 402
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=91.03 E-value=0.035 Score=54.60 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.3
Q ss_pred cceEEEEEccCccccceeeEEeeeC
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRG 320 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~ 320 (373)
..++++++|..++|||||+++++..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999853
No 403
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=90.96 E-value=0.036 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.6
Q ss_pred cceEEEEEccCccccceeeEEeeeCc
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRGQ 321 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~~ 321 (373)
..++++++|..++|||||+++++.+.
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 35899999999999999999998543
No 404
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=90.84 E-value=0.033 Score=60.42 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=36.2
Q ss_pred ccceEEEEEccCccccceeeEEeeeCc-------ccc-------cccCCccccccccceeeeecceeeeCCeEEEEEehh
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVRGQ-------FHE-------YQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVW 360 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~~~-------f~~-------~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~ 360 (373)
...++++++|..++|||||+++++... |.. ..+.+.| +.+....+.+++....+.|||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerG--------ITIdva~v~f~~~~~kI~IID 365 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG--------ITINTSHVEYDTPTRHYAHVD 365 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC-----------------------------CCSCEEEECSSCEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCc--------eeEEEEEEEEcCCCEEEEEEE
Confidence 346899999999999999999988631 111 2234666 333334445566678899999
Q ss_pred hH
Q psy18160 361 VI 362 (373)
Q Consensus 361 ~~ 362 (373)
++
T Consensus 366 TP 367 (1289)
T 3avx_A 366 CP 367 (1289)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 405
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=90.66 E-value=0.04 Score=57.03 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=22.0
Q ss_pred ccceEEEEEccCccccceeeEEeee
Q psy18160 295 ICQYKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 295 ~~~~k~~~iG~~~vGks~l~~~~~~ 319 (373)
....+++++|..++|||||+++++.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999983
No 406
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=90.37 E-value=0.025 Score=55.18 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.3
Q ss_pred cceEEEEEccCccccceeeEEeeeC
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVRG 320 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~~ 320 (373)
..++++++|..++|||||+++++.+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999864
No 407
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=90.31 E-value=0.038 Score=53.22 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.7
Q ss_pred ceEEEEEccCccccceeeEEeeeC
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRG 320 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~ 320 (373)
.+|++++|..++|||||+++++..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 489999999999999999999863
No 408
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.88 E-value=0.14 Score=47.11 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=29.5
Q ss_pred eeeEEeeeCccc-ccccCCccccccccceeeeecceeeeCCeEEEEEehhh
Q psy18160 312 SLVLRFVRGQFH-EYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWV 361 (373)
Q Consensus 312 ~l~~~~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~ 361 (373)
+++.||+.+.|. ..|.|||| ..|. ..+..++ +++|||+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG--------d~~~-~~~~~~~---~~~iwD~ 70 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG--------DRVE-YTPDETG---SGVIENV 70 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT--------CEEE-EECCCSS---SEEEEEE
T ss_pred cEEEEEEcccccccCCCCCCc--------cEEE-EEEcCCC---eEEEEEE
Confidence 799999999999 89999999 4443 3333333 7899997
No 409
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=89.70 E-value=0.043 Score=52.37 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=33.1
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCccccccccceeeeecceeeeCCeEEEEEehhhH
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVI 362 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~ 362 (373)
+++++|..++|||||+++++ .+..|+.. .+. .+ +....++.|||.+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~--------~~~--~~--~~~~~~i~iiDtP 68 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDI--------TMY--NN--DKEGRNMVFVDAH 68 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSS--------EEE--EE--CSSSSEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEe--------eEE--EE--ecCCeEEEEEECC
Confidence 88999999999999999998 45567762 221 12 2233458999975
No 410
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=89.03 E-value=0.077 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=18.8
Q ss_pred ceEEEEEccCccccceeeEEeee
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~ 319 (373)
..+++++|..++|||||+.+++.
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999875
No 411
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=88.98 E-value=0.046 Score=55.55 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=28.0
Q ss_pred ceEEEEEccCccccceeeEEeeeCccccc----ccCCccc
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEY----QESTIGG 332 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~----~~~Tig~ 332 (373)
..+++++|..++|||||+++++...+... ..+++|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~ 44 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA 44 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTE
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCe
Confidence 36899999999999999999987666442 3357773
No 412
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.88 E-value=0.69 Score=39.15 Aligned_cols=87 Identities=11% Similarity=0.001 Sum_probs=56.6
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.|+|+++.. .......+..+|.++++...+.. + ..+.++++.+.... ...++.+
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~-------------------~~~~~~~ 132 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQ-------------------AYSRKVE 132 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTS-------------------CGGGCCE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHH-------------------HhCCCCc
Confidence 557899998764 33445567789999999987644 4 66666666665511 0124667
Q ss_pred EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160 170 IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM 203 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~ 203 (373)
+.+|.|+.|-.. ....+..++.+.++.+++
T Consensus 133 ~~vv~N~~~~~~----~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 133 ARFLITRKIEMA----TMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp EEEEECSBCTTE----EEEHHHHHHHHHHTCCBC
T ss_pred EEEEEeccCCCc----hHHHHHHHHHHHcCCcee
Confidence 899999999532 223455666666676554
No 413
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=88.78 E-value=0.083 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.5
Q ss_pred cceEEEEEccCccccceeeEEeee
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~ 319 (373)
..++++++|..++|||||+++++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 458999999999999999999864
No 414
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.26 E-value=0.19 Score=46.70 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=41.6
Q ss_pred CCCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 164 APPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 164 ~~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
...++|+| |.+|.|.. .++..+.|++.+++++.++..+...+..+..+|...+.
T Consensus 77 l~~~~P~I-Iltrg~~~-------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~ 130 (314)
T 1ko7_A 77 CRPETPAI-IVTRDLEP-------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELA 130 (314)
T ss_dssp CCTTCCCE-EECTTCCC-------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred hcCCCCEE-EEeCCCCC-------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhc
Confidence 33455654 66777754 35678889999999999999999999998888877665
No 415
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.20 E-value=0.22 Score=46.64 Aligned_cols=90 Identities=10% Similarity=0.030 Sum_probs=51.7
Q ss_pred EEEEeCCCccccccc-chh---h--ccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCC
Q psy18160 92 FEIWDTAGQERYHTL-APM---Y--YRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAP 165 (373)
Q Consensus 92 l~i~Dt~G~e~~~~l-~~~---~--~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
+.+.||+|....... ... . .-..|-.+++.|..... ++.+.+..+.+
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~------------------------ 266 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNE------------------------ 266 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHH------------------------
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHH------------------------
Confidence 457899987433221 111 0 11478889999976543 33333333332
Q ss_pred CCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q psy18160 166 PNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNE 215 (373)
Q Consensus 166 ~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~ 215 (373)
.--.-+|+.||.|-.. ..-.+...+...+.|+..++ +|+++++
T Consensus 267 ~~~it~iilTKlD~~a-----~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 267 AVKIDGIILTKLDADA-----RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp HSCCCEEEEECGGGCS-----CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred hcCCCEEEEeCcCCcc-----chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 0113478889999532 23445667778899988777 6666654
No 416
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=87.87 E-value=0.31 Score=43.06 Aligned_cols=26 Identities=4% Similarity=-0.155 Sum_probs=17.8
Q ss_pred CCCcEEEEEEcC---ChhHHHHHhhhCcC
Q psy18160 44 QSDCMAQIWLKD---RVDCMTQIVINVVF 69 (373)
Q Consensus 44 ~~~~i~ivvlG~---GKTsLl~rl~~~~~ 69 (373)
+.+.+.+++-|+ |||.|++++++..-
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~~ 54 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCSS 54 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhcccc
Confidence 344444444455 89999999998853
No 417
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=87.83 E-value=0.071 Score=55.23 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=26.9
Q ss_pred ceEEEEEccCccccceeeEEeeeCcc-cccccCCc
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTI 330 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f-~~~~~~Ti 330 (373)
.++++++|.+++|||||++++++..+ .....|+.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 58999999999999999999997764 33344444
No 418
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=86.71 E-value=0.16 Score=48.52 Aligned_cols=58 Identities=17% Similarity=0.076 Sum_probs=38.2
Q ss_pred eEEEEEccCccccceeeEEeeeCc-ccccc-cCCccccccccceeeeecceeeeCCeEEEEEehhhHHHHhc
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQ-FHEYQ-ESTIGGECQSSHSISFSMPTKNRLNNNVPITFVWVIMMIFG 367 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~-f~~~~-~~Tig~~~~~~~~~~~~~~~~~v~~~~~~l~iw~~~~~~~~ 367 (373)
..+.++|.++||||||++++.... -...| ..|+. -....+.++|. +++|.|++-.+-|
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~----------~~~g~~~~~~~--~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLV----------TVPGVIRYKGA--KIQMLDLPGIIDG 132 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCC----------EEEEEEEETTE--EEEEEECGGGCCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceee----------eeeEEEEeCCc--EEEEEeCCCccCC
Confidence 578999999999999999988643 22333 33332 12244556665 4678898866543
No 419
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.64 E-value=0.062 Score=46.55 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=25.5
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig 331 (373)
..+++++|.+|+|||||+++++...+......++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~ 64 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML 64 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe
Confidence 36889999999999999999986543332233444
No 420
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=86.55 E-value=0.13 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.4
Q ss_pred EEEEEccCccccceeeEEeeeCcccc
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHE 324 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~ 324 (373)
+++++|++|+|||||++++++..|..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp 61 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLP 61 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCC
Confidence 78999999999999999999887733
No 421
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.38 E-value=1 Score=41.25 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=55.7
Q ss_pred EEEEEEeCCCccc--cc-ccch-----hhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhh
Q psy18160 90 IRFEIWDTAGQER--YH-TLAP-----MYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQ 161 (373)
Q Consensus 90 v~l~i~Dt~G~e~--~~-~l~~-----~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
+.+.|+||+|... .. .+.. .....+|.+++|.|..... +..+....+..
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-------------------- 237 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-------------------- 237 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------------------
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------------------
Confidence 4578999999765 21 1111 1234789999999986432 22222222221
Q ss_pred hcCCCCCe-EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q psy18160 162 RMAPPNIV-IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEI 216 (373)
Q Consensus 162 ~~~~~~~p-iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~l 216 (373)
..| ..+|.||.|... ....+..++...+.|+..++ .|++++++
T Consensus 238 -----~~~i~gvVlnk~D~~~-----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 238 -----ASKIGTIIITKMDGTA-----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -----TCTTEEEEEECGGGCT-----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred -----hCCCCEEEEeCCCCCc-----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 234 678999999643 23445667777888887776 56666543
No 422
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=85.26 E-value=0.22 Score=51.53 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=21.1
Q ss_pred cceEEEEEccCccccceeeEEeee
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~ 319 (373)
...+++++|..++|||||+.+++.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
No 423
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=84.53 E-value=0.18 Score=52.09 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.5
Q ss_pred cceEEEEEccCccccceeeEEeee
Q psy18160 296 CQYKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 296 ~~~k~~~iG~~~vGks~l~~~~~~ 319 (373)
...+++++|.+++|||||+++++.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999984
No 424
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=84.20 E-value=0.13 Score=47.23 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=23.0
Q ss_pred eEEEEEccCccccceeeEEeeeCcc
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQF 322 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f 322 (373)
.+++++|.+++|||||++++++..+
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 5799999999999999999998776
No 425
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=83.08 E-value=4.7 Score=34.45 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=55.3
Q ss_pred EEEEEEeCCCc-ccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 90 IRFEIWDTAGQ-ERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 90 v~l~i~Dt~G~-e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
+.+.|+|+++. .. ......+..+|.+|++...+ ..+...+.+.++.+.. .. +.
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~---------------------~~--~~ 121 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQK---------------------LG--NN 121 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHH---------------------TC--SS
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHh---------------------cc--CC
Confidence 45778999875 32 23455677899999999874 5667777777666655 11 45
Q ss_pred eEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160 169 VIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM 203 (373)
Q Consensus 169 piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~ 203 (373)
++.+|.|+.|-... ....+..+..++++.+++
T Consensus 122 ~~~vv~N~~~~~~~---~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 122 RFRILLTIIPPYPS---KDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp SEEEEECSBCCTTS---CHHHHHHHHHHHTTCCBC
T ss_pred CEEEEEEecCCccc---hHHHHHHHHHHHcCCchh
Confidence 68899999986430 113455555555666554
No 426
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=83.03 E-value=0.2 Score=48.47 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEEccCccccceeeEEeeeCc
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQ 321 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~ 321 (373)
.+.++|.+|+|||||++.+....
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 46899999999999999888653
No 427
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=81.72 E-value=11 Score=32.35 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=57.3
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.|+|+++.- .......+..+|.++++...+ ..+...+.++++.+.. ...+..+
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---------------------~~~~~~~ 174 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKE---------------------FEKPISR 174 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHT---------------------CSSCCSC
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHH---------------------hCCCccc
Confidence 457789997743 234455677899999999874 6777777777777765 2233456
Q ss_pred EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEE
Q psy18160 170 IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~ev 205 (373)
+.+|.|+.|-... ...+ .+.+.++.+++.+
T Consensus 175 ~~~v~N~~~~~~~---~~~~---~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 175 IEIILNRADTNSR---ITSD---EIEKVIGRPISKR 204 (245)
T ss_dssp EEEEEESTTSCTT---SCHH---HHHHHHTSCEEEE
T ss_pred eEEEEecCCCCCC---CCHH---HHHHHhCCCeEEE
Confidence 8899999985432 3333 3445567776654
No 428
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=80.52 E-value=0.21 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=20.2
Q ss_pred ceEEEEEccCccccceeeEEeee
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~ 319 (373)
.|++.++|++|+|||||++.+++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999987665
No 429
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=79.73 E-value=0.35 Score=48.57 Aligned_cols=27 Identities=15% Similarity=0.344 Sum_probs=24.4
Q ss_pred ceEEEEEccCccccceeeEEeeeCccc
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFH 323 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~ 323 (373)
..+++++|.+++|||||++++++..+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 478999999999999999999988773
No 430
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=78.57 E-value=2.8 Score=40.78 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=34.6
Q ss_pred cEEEEEEcC---ChhHHHHHhh------------------hCcCcCc------ceeeeEEEEEEEE---CCEEEEEEEEe
Q psy18160 47 CMAQIWLKD---RVDCMTQIVI------------------NVVFYPY------LFSAAFITQTVCL---DDVTIRFEIWD 96 (373)
Q Consensus 47 ~i~ivvlG~---GKTsLl~rl~------------------~~~~~~~------Tig~~~~~~~i~~---~~~~v~l~i~D 96 (373)
..-+.++|. |||+|+|.++ ...|... |.|+-.....+.+ ++..+.+-+.|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 444556665 9999999554 1234432 7776543333222 56778899999
Q ss_pred CCCcc
Q psy18160 97 TAGQE 101 (373)
Q Consensus 97 t~G~e 101 (373)
|.|..
T Consensus 147 TEG~~ 151 (457)
T 4ido_A 147 TQGTF 151 (457)
T ss_dssp ECCBT
T ss_pred ccCCC
Confidence 99864
No 431
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=78.02 E-value=22 Score=31.97 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=54.4
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.|+|+++.-... .....+..+|.+++|... +..+...+.++++.+... ....+.+
T Consensus 157 yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~--------------------~~~~~~~ 214 (307)
T 3end_A 157 TDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAK--------------------SKNYKVR 214 (307)
T ss_dssp CSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTT--------------------TTTCCCE
T ss_pred CCEEEEeCCCccchH-HHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHh--------------------hhcCCCc
Confidence 567789997643221 123456789999999876 466777777777766651 1124566
Q ss_pred EE-EEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q psy18160 170 IA-LAGNKADLPTSRRCVEYSEGEAYAEENGLLFME 204 (373)
Q Consensus 170 ii-lVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~e 204 (373)
++ +|.|+.+- + +...++.+.++.+++.
T Consensus 215 ~~gvV~N~~~~----~----~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 215 LAGCVANRSRA----T----DEVDRFCKETNFRRLA 242 (307)
T ss_dssp EEEEEEESCSC----C----HHHHHHHHHHTCCEEE
T ss_pred eEEEEEecCCc----H----HHHHHHHHHcCCCcee
Confidence 55 89999983 1 3455566667776553
No 432
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=76.93 E-value=7.3 Score=34.24 Aligned_cols=70 Identities=9% Similarity=0.062 Sum_probs=43.1
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.|+|+++.-. ......+..+|.+|++...+ ..+...+.++++.+.. +.....++.+
T Consensus 112 yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~------------------~~~~~~~~~~ 170 (257)
T 1wcv_1 112 YDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAE-YYALEGVAGLLATLEE------------------VRAGLNPRLR 170 (257)
T ss_dssp CSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESS-THHHHHHHHHHHHHHH------------------HHHHTCTTCE
T ss_pred CCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCc-hHHHHHHHHHHHHHHH------------------HHHHhCCCce
Confidence 4577899987532 22344566799999999975 4555555554444433 1111234667
Q ss_pred EE-EEEeCCCCC
Q psy18160 170 IA-LAGNKADLP 180 (373)
Q Consensus 170 ii-lVgnK~Dl~ 180 (373)
++ +|.|+.|-.
T Consensus 171 ~~gvv~N~~~~~ 182 (257)
T 1wcv_1 171 LLGILVTMYDGR 182 (257)
T ss_dssp EEEEEEESBCTT
T ss_pred EEEEEEEeECCC
Confidence 64 899999853
No 433
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.12 E-value=0.37 Score=40.49 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=17.9
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
.++++|++|+|||||++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999987654
No 434
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=73.41 E-value=0.8 Score=38.54 Aligned_cols=20 Identities=45% Similarity=0.838 Sum_probs=16.7
Q ss_pred EEEEEccCccccceeeEEee
Q psy18160 299 KLVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~ 318 (373)
++.++|++|+|||||+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999976444
No 435
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=72.48 E-value=0.87 Score=46.03 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred ceEEEEEccCccccceeeEEeeeCc
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQ 321 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~ 321 (373)
...++++|.+++|||+|+|++.+..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3678999999999999999998764
No 436
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=71.10 E-value=0.52 Score=40.23 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.5
Q ss_pred EEEEccCccccceeeEEeee
Q psy18160 300 LVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~~~ 319 (373)
++++|++|+||++|+.+++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999887763
No 437
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=70.72 E-value=0.59 Score=43.95 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.1
Q ss_pred eEEEEEccCccccceeeEEeee
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~ 319 (373)
..+.++|.+|+|||||+++++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6789999999999999998874
No 438
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=69.68 E-value=2.4 Score=35.55 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=16.6
Q ss_pred EEEEEcC---ChhHHHHHhhhCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVV 68 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~ 68 (373)
+++++|. |||||++.+++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 5778887 9999999998653
No 439
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=69.58 E-value=0.73 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=20.9
Q ss_pred eEEEEEccCccccceeeEEeeeCcc
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVRGQF 322 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~~~f 322 (373)
+++.++|++|+|||||++.+.+-.+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccc
Confidence 5689999999999999988776543
No 440
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=69.11 E-value=1.1 Score=42.27 Aligned_cols=43 Identities=5% Similarity=-0.248 Sum_probs=24.6
Q ss_pred CcccccccCCccccccccc-eeeeecceeeeCC----eEEEEEehhhH
Q psy18160 320 GQFHEYQESTIGGECQSSH-SISFSMPTKNRLN----NNVPITFVWVI 362 (373)
Q Consensus 320 ~~f~~~~~~Tig~~~~~~~-~~~~~~~~~~v~~----~~~~l~iw~~~ 362 (373)
.-|...|.||++..|+... ..-+......+++ ..++|+|||+|
T Consensus 144 ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDta 191 (354)
T 2xtz_A 144 RLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVG 191 (354)
T ss_dssp HHHSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEEC
T ss_pred HHhcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECC
Confidence 3467889999986665432 0111112334666 78999999986
No 441
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.02 E-value=0.61 Score=40.18 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=17.9
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
-++++|++|+|||+|++.++.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 468899999999999987763
No 442
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=68.07 E-value=1.2 Score=38.02 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=17.8
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
.++++|++|+|||||++.++.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999876654
No 443
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.46 E-value=1.2 Score=36.87 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=15.7
Q ss_pred EEEEccCccccceeeEEe
Q psy18160 300 LVLLGESAVGKSSLVLRF 317 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~ 317 (373)
+.++|++|+|||||+..+
T Consensus 12 ~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999999843
No 444
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.58 E-value=0.69 Score=38.93 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=16.5
Q ss_pred EEEEccCccccceeeEEee
Q psy18160 300 LVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~~ 318 (373)
++++|++|+||||++..+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEESSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999987665
No 445
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=65.94 E-value=3.4 Score=34.34 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=15.8
Q ss_pred EEEEEcC---ChhHHHHHhhhC
Q psy18160 49 AQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~ 67 (373)
.++++|. |||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5677776 999999999874
No 446
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=65.62 E-value=11 Score=33.29 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
.+.+.|+|+++.-....+....+..+|.+|++...+ ..+...+.+.++.+.. .+.
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~------------------------~~~ 182 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEE------------------------TNT 182 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHT------------------------TTC
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHh------------------------CCC
Confidence 356789999875321111111223689999998765 3455666666555544 244
Q ss_pred eEE-EEEeCCCCCC----CCccc-CHHHHHHHHHHcCCeEEE
Q psy18160 169 VIA-LAGNKADLPT----SRRCV-EYSEGEAYAEENGLLFME 204 (373)
Q Consensus 169 pii-lVgnK~Dl~~----~~~~v-~~~e~~~~~~~~~~~~~e 204 (373)
+++ +|.|+.|... ..... ..+...++.+.++.+++.
T Consensus 183 ~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 183 SVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEE
T ss_pred CEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEE
Confidence 555 9999987411 10111 112345566777877664
No 447
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=64.16 E-value=0.19 Score=49.38 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=25.0
Q ss_pred ceEEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig 331 (373)
.++++++|.+|+|||++..++...-+ ..+.+|.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~ 72 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTRE 72 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceE
Confidence 46899999999999999888765432 33445555
No 448
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=63.53 E-value=4.9 Score=33.31 Aligned_cols=19 Identities=5% Similarity=0.087 Sum_probs=15.8
Q ss_pred EEEEEcC---ChhHHHHHhhhC
Q psy18160 49 AQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~ 67 (373)
.++++|. |||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4667775 999999999876
No 449
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=62.89 E-value=4.1 Score=34.20 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=16.0
Q ss_pred EEEEEcC---ChhHHHHHhhhC
Q psy18160 49 AQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~ 67 (373)
.++++|+ |||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5677886 999999999875
No 450
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=62.86 E-value=0.95 Score=38.85 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=17.6
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
-++++|++|+|||+++..+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 367899999999999887664
No 451
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=62.76 E-value=3.8 Score=34.21 Aligned_cols=18 Identities=0% Similarity=-0.103 Sum_probs=15.0
Q ss_pred EEEEcC---ChhHHHHHhhhC
Q psy18160 50 QIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 50 ivvlG~---GKTsLl~rl~~~ 67 (373)
++++|+ |||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 567776 999999999864
No 452
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=62.40 E-value=1.7 Score=36.58 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=17.2
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
-+.++|++|+||||++..+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 368999999999999876553
No 453
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=62.24 E-value=17 Score=31.87 Aligned_cols=64 Identities=9% Similarity=-0.060 Sum_probs=44.1
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.|+|+++.- .......+..+|.+|++...+ ..+...+...++.+.. ...+.+
T Consensus 145 yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~----------------------~~~~~~ 199 (267)
T 3k9g_A 145 YDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRK----------------------LNLFLP 199 (267)
T ss_dssp CSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHT----------------------TTCCCC
T ss_pred CCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHH----------------------HhccCC
Confidence 457788998743 233455667799999999984 4566666666666655 123467
Q ss_pred EEEEEeCCC
Q psy18160 170 IALAGNKAD 178 (373)
Q Consensus 170 iilVgnK~D 178 (373)
+.+|.|+.+
T Consensus 200 ~~vv~N~~~ 208 (267)
T 3k9g_A 200 IFLIITRFK 208 (267)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEeccc
Confidence 789999994
No 454
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.15 E-value=4.7 Score=34.09 Aligned_cols=20 Identities=5% Similarity=-0.085 Sum_probs=16.3
Q ss_pred EEEEEEcC---ChhHHHHHhhhC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~ 67 (373)
..++++|+ |||||++.+.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46778886 999999999864
No 455
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=62.14 E-value=4 Score=34.59 Aligned_cols=19 Identities=0% Similarity=-0.048 Sum_probs=15.8
Q ss_pred EEEEEcC---ChhHHHHHhhhC
Q psy18160 49 AQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~ 67 (373)
.++++|. |||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4678886 999999999864
No 456
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=61.87 E-value=1.8 Score=37.70 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.4
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
-++++|++|+|||||+..+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999876553
No 457
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.66 E-value=1.8 Score=36.89 Aligned_cols=19 Identities=53% Similarity=0.623 Sum_probs=16.2
Q ss_pred EEEEccCccccceeeEEee
Q psy18160 300 LVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~~ 318 (373)
+.++|++|+|||||++.+.
T Consensus 23 ~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999987554
No 458
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=61.06 E-value=39 Score=28.67 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=51.8
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.|+|+++... ......+..+|.++++...+ ..+...+.+.++.+.. . ...+
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~---------------------~--~~~~ 165 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---------------------A--GLAI 165 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---------------------T--TCEE
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHh---------------------C--CCce
Confidence 3467889987532 33455678899999998864 5677777777666655 1 2245
Q ss_pred EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160 170 IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM 203 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~ 203 (373)
+.+|.|+.|-... . ...+ ++.+..+.+++
T Consensus 166 ~~vv~N~~~~~~~-~-~~~~---~~~~~~~~~~~ 194 (237)
T 1g3q_A 166 LGFVLNRYGRSDR-D-IPPE---AAEDVMEVPLL 194 (237)
T ss_dssp EEEEEEEETSCTT-C-CCHH---HHHHHHCSCEE
T ss_pred EEEEEecCCcccc-h-hHHH---HHHHHhCccce
Confidence 7789999986432 1 2222 33444566543
No 459
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=60.84 E-value=5.1 Score=34.29 Aligned_cols=20 Identities=0% Similarity=0.071 Sum_probs=16.2
Q ss_pred EEEEEEcC---ChhHHHHHhhhC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~ 67 (373)
-.++++|. |||||++++.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35677776 999999999865
No 460
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=60.70 E-value=1.3 Score=36.05 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.0
Q ss_pred EEEEEccCccccceeeEEee
Q psy18160 299 KLVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~ 318 (373)
.+++.|.+|+||||+...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999887654
No 461
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=60.70 E-value=2 Score=37.23 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=17.3
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
.+.++|++|+|||||+..+.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999876554
No 462
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=60.40 E-value=4.8 Score=34.24 Aligned_cols=20 Identities=0% Similarity=-0.134 Sum_probs=16.4
Q ss_pred EEEEEEcC---ChhHHHHHhhhC
Q psy18160 48 MAQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 48 i~ivvlG~---GKTsLl~rl~~~ 67 (373)
..++++|. |||||++.+.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46777886 999999998864
No 463
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=60.32 E-value=1.3 Score=37.81 Aligned_cols=18 Identities=44% Similarity=0.730 Sum_probs=0.0
Q ss_pred EEEEccCccccceeeEEe
Q psy18160 300 LVLLGESAVGKSSLVLRF 317 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~ 317 (373)
++++|.+|+|||++...+
T Consensus 15 i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
No 464
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=59.38 E-value=34 Score=29.70 Aligned_cols=83 Identities=10% Similarity=-0.008 Sum_probs=52.8
Q ss_pred EEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCe
Q psy18160 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIV 169 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 169 (373)
+.+.|+|+++... ......+..+|.+|++...+ ..+...+.+.++.+.. . ...+
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~---------------------~--~~~~ 164 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAER---------------------L--GTKV 164 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHH---------------------H--TCEE
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHh---------------------c--CCCe
Confidence 3467899986432 33445567899999998764 5667777777666655 1 1245
Q ss_pred EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160 170 IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM 203 (373)
Q Consensus 170 iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~ 203 (373)
+-+|.|+.|-... . ....++.+..+.+++
T Consensus 165 ~~vv~N~~~~~~~---~--~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 165 LGVVVNRITTLGI---E--MAKNEIEAILEAKVI 193 (263)
T ss_dssp EEEEEEEECTTTH---H--HHHHHHHHHTTSCEE
T ss_pred eEEEEccCCcccc---c--chHHHHHHHhCCCeE
Confidence 6789999985331 1 334555566676643
No 465
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=59.11 E-value=74 Score=27.48 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=51.3
Q ss_pred EEEEEEeCCCcccccccc-hhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 90 IRFEIWDTAGQERYHTLA-PMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 90 v~l~i~Dt~G~e~~~~l~-~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
+.+.|+|+++......+. ......+|.++++... +..+...+.++++.+... ....+.
T Consensus 116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~--------------------~~~~~~ 174 (269)
T 1cp2_A 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKY--------------------AKSGGV 174 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHH--------------------BTTBBC
T ss_pred CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHH--------------------HhcCCC
Confidence 446788998753222221 1112469999999886 456777776666665541 011244
Q ss_pred e-EEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEE
Q psy18160 169 V-IALAGNKADLPTSRRCVEYSEGEAYAEENGLLFM 203 (373)
Q Consensus 169 p-iilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~ 203 (373)
+ +-+|.|+.+.. ...+....+.+.++.+++
T Consensus 175 ~~~gvv~N~~~~~-----~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 175 RLGGIICNSRKVA-----NEYELLDAFAKELGSQLI 205 (269)
T ss_dssp EEEEEEEECCSSS-----CCHHHHHHHHHHHTCCEE
T ss_pred cEEEEEeecCCcc-----hhHHHHHHHHHHcCCccc
Confidence 5 46889998732 233445556666776654
No 466
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=59.09 E-value=2 Score=35.79 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.5
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
.++++|.+|+||||++..+..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999876644
No 467
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=59.04 E-value=5.4 Score=32.68 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=16.8
Q ss_pred EEEEEcC---ChhHHHHHhhhCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVV 68 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~ 68 (373)
.++++|+ |||||++.+++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 5677786 9999999999865
No 468
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=58.21 E-value=1.5 Score=37.41 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=17.6
Q ss_pred eEEEEEccCccccceeeEEee
Q psy18160 298 YKLVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~ 318 (373)
+++++.|.+|+||||+...+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999877663
No 469
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=57.50 E-value=5.2 Score=34.46 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=16.3
Q ss_pred EEEEEcC---ChhHHHHHhhhCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVV 68 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~ 68 (373)
.++++|. |||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 4677886 9999999998754
No 470
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.50 E-value=5.7 Score=33.71 Aligned_cols=20 Identities=0% Similarity=-0.034 Sum_probs=16.3
Q ss_pred EEEEEcC---ChhHHHHHhhhCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVV 68 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~ 68 (373)
.++++|. |||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 4677786 9999999998753
No 471
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=57.46 E-value=2.8 Score=35.74 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.7
Q ss_pred eEEEEEccCccccceeeEEe
Q psy18160 298 YKLVLLGESAVGKSSLVLRF 317 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~ 317 (373)
..+.++|++|+|||||+..+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46789999999999988544
No 472
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=57.25 E-value=1.6 Score=37.29 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=17.5
Q ss_pred eEEEEEccCccccceeeEEee
Q psy18160 298 YKLVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~ 318 (373)
+++++.|.+|+||||+...+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999877653
No 473
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=56.93 E-value=4 Score=37.13 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHcchhhccCCCCCCccccccCCCCCCCCCCcceeeeecccccceeecccCCCCCCCCCCCCCCC
Q psy18160 207 AKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANSNNSNSNGRGGRIQR 286 (373)
Q Consensus 207 ak~~~gI~~lf~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 286 (373)
++....+++++..|++.+...........
T Consensus 3 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~--------------------------------------------------- 31 (290)
T 1odf_A 3 DKSKTVLDYTIEFLDKYIPEWFETGNKCP--------------------------------------------------- 31 (290)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTTCCSC---------------------------------------------------
T ss_pred chhHhHHHHHHHHHHHHHHHhhhccCCCC---------------------------------------------------
Q ss_pred CCCcccccccceEEEEEccCccccceeeEEe
Q psy18160 287 PNDQTQAKICQYKLVLLGESAVGKSSLVLRF 317 (373)
Q Consensus 287 ~~~~~~~~~~~~k~~~iG~~~vGks~l~~~~ 317 (373)
..+.+.|.+|+||||++..+
T Consensus 32 -----------~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 32 -----------LFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp -----------EEEEEECCTTSSHHHHHHHH
T ss_pred -----------eEEEEECCCCCCHHHHHHHH
No 474
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=56.67 E-value=6 Score=34.29 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=16.3
Q ss_pred EEEEEcC---ChhHHHHHhhhCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVV 68 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~ 68 (373)
.++++|. |||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 5677776 9999999998754
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.56 E-value=2.9 Score=46.37 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEccCccccceeeEEeeeCcccccccCCcc
Q psy18160 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~~~f~~~~~~Tig 331 (373)
|+.++|++|+|||||+.-+.+ -|+|+-|
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G 1134 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER-----FYDTLGG 1134 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT-----SSCCSSS
T ss_pred EEEEECCCCChHHHHHHHHhc-----CccCCCC
Confidence 578999999999998764432 3556655
No 476
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=56.30 E-value=28 Score=29.69 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=42.8
Q ss_pred EEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCCeE
Q psy18160 91 RFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVI 170 (373)
Q Consensus 91 ~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 170 (373)
.+.|+|+++.-. ......+..+|.++++.+. +..++..+.++.+.+.. .. -..+
T Consensus 133 D~viiD~pp~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~---------------------~~--~~~~ 186 (254)
T 3kjh_A 133 EAVVMDMGAGIE--HLTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGD---------------------LG--IKKV 186 (254)
T ss_dssp SEEEEEECTTCT--TCCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHH---------------------HT--CSCE
T ss_pred CEEEEeCCCccc--HHHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHH---------------------cC--CccE
Confidence 467899987532 2455667889999999987 46677777666654444 11 1457
Q ss_pred EEEEeCCC
Q psy18160 171 ALAGNKAD 178 (373)
Q Consensus 171 ilVgnK~D 178 (373)
.+|.|+.+
T Consensus 187 ~~v~N~~~ 194 (254)
T 3kjh_A 187 RYVINKVR 194 (254)
T ss_dssp EEEEEEEC
T ss_pred EEEEeCCC
Confidence 88999998
No 477
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=56.27 E-value=2.6 Score=34.65 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.2
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
.+.++|+.|+|||+|+.-+.+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999876554
No 478
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=56.08 E-value=3.4 Score=33.81 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.5
Q ss_pred eEEEEEccCccccceeeEEe
Q psy18160 298 YKLVLLGESAVGKSSLVLRF 317 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~ 317 (373)
..++++|.+|+|||++...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999987654
No 479
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=55.79 E-value=2.7 Score=36.99 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=0.0
Q ss_pred EEEEccCccccceee
Q psy18160 300 LVLLGESAVGKSSLV 314 (373)
Q Consensus 300 ~~~iG~~~vGks~l~ 314 (373)
+.++|++|+|||||+
T Consensus 34 ~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 34 VSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
No 480
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=55.76 E-value=2 Score=40.29 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.5
Q ss_pred eEEEEEccCccccceeeEEeee
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~ 319 (373)
..++++|.+|+|||++++++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999988753
No 481
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=55.62 E-value=3.6 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.3
Q ss_pred eEEEEEccCccccceeeEEeee
Q psy18160 298 YKLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 298 ~k~~~iG~~~vGks~l~~~~~~ 319 (373)
.-+.++|..++|||+|+|++++
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhh
Confidence 4578999999999999999874
No 482
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=55.39 E-value=3.2 Score=35.97 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=0.0
Q ss_pred EEEEccCccccceee
Q psy18160 300 LVLLGESAVGKSSLV 314 (373)
Q Consensus 300 ~~~iG~~~vGks~l~ 314 (373)
+.++|++|+||||++
T Consensus 30 i~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEECSCC----CHH
T ss_pred EEEECCCCCCHHHHH
No 483
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=55.38 E-value=6 Score=33.57 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=15.7
Q ss_pred EEEEEcC---ChhHHHHHhhhC
Q psy18160 49 AQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~ 67 (373)
++++.|+ ||||+.++|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778887 999999999753
No 484
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=54.98 E-value=2.5 Score=34.96 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=0.0
Q ss_pred EEEEccCccccceee
Q psy18160 300 LVLLGESAVGKSSLV 314 (373)
Q Consensus 300 ~~~iG~~~vGks~l~ 314 (373)
+++.|++|+|||+|+
T Consensus 41 ~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLA 55 (180)
T ss_dssp EEECCSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 485
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=54.98 E-value=5.4 Score=36.80 Aligned_cols=53 Identities=6% Similarity=-0.100 Sum_probs=38.4
Q ss_pred CCCCeEEEEEeCCCCCCCCcccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHcc
Q psy18160 165 PPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLP 225 (373)
Q Consensus 165 ~~~~piilVgnK~Dl~~~~~~v~~~e~~~~~~~~~~~~~evSak~~~gI~~lf~~L~~~i~ 225 (373)
..++|.+|+..-.. ..++..+.|++.+++.+.+.-.+-.=+..+-..|...+.
T Consensus 81 ~~~iP~IIvtrg~~--------pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la 133 (312)
T 1knx_A 81 KLNPPAIILTKSFT--------DPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFA 133 (312)
T ss_dssp TTCCSCEEEETTTC--------CCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTC
T ss_pred CCCCCEEEEECCCC--------CCHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhh
Confidence 35788888876333 246788899999999998777666666666666666664
No 486
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=54.79 E-value=6.3 Score=32.80 Aligned_cols=18 Identities=0% Similarity=-0.062 Sum_probs=15.2
Q ss_pred EEEEEcC---ChhHHHHHhhh
Q psy18160 49 AQIWLKD---RVDCMTQIVIN 66 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~ 66 (373)
.+++.|. ||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 5777776 99999999986
No 487
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=54.71 E-value=6.2 Score=33.55 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=16.3
Q ss_pred EEEEEcC---ChhHHHHHhhhCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVV 68 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~ 68 (373)
.++++|. |||||++.+....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 5677776 9999999998763
No 488
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=54.63 E-value=3.4 Score=33.44 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=16.9
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
-+.++|++|+|||+|+.-+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999998865543
No 489
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=54.55 E-value=2.9 Score=34.85 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=0.0
Q ss_pred EEEEccCccccceee
Q psy18160 300 LVLLGESAVGKSSLV 314 (373)
Q Consensus 300 ~~~iG~~~vGks~l~ 314 (373)
++++|.+|+||||++
T Consensus 5 i~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 5 YIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
No 490
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=54.53 E-value=22 Score=30.73 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCcccccccchhhccCCcEEEEEEECCCHhhHHHHHHHHHHHHhhCCCCCCcccccchhHHhhhhcCCCCC
Q psy18160 89 TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNI 168 (373)
Q Consensus 89 ~v~l~i~Dt~G~e~~~~l~~~~~~~ad~iilv~D~~~~~Sf~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (373)
.+.+.|+|+++.- .......+..+|.++++.+. +..+...+.+++..+..... ......+..
T Consensus 113 ~yD~viiD~p~~~--~~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~---------------~~~~~~~~~ 174 (260)
T 3q9l_A 113 DFEFIVCDSPAGI--ETGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSR---------------RAENGEEPI 174 (260)
T ss_dssp TCSEEEEECCSSS--SHHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSH---------------HHHTTCSCC
T ss_pred CCCEEEEcCCCCC--CHHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhcc---------------ccccccCCc
Confidence 3567899998743 23455667789999999987 46677777777666654100 000111335
Q ss_pred eEEEEEeCCCC
Q psy18160 169 VIALAGNKADL 179 (373)
Q Consensus 169 piilVgnK~Dl 179 (373)
++.+|.|+.|-
T Consensus 175 ~~~~v~N~~~~ 185 (260)
T 3q9l_A 175 KEHLLLTRYNP 185 (260)
T ss_dssp EEEEEEEEECH
T ss_pred ceEEEEecCCc
Confidence 78899999884
No 491
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=54.42 E-value=6.4 Score=32.62 Aligned_cols=19 Identities=5% Similarity=-0.122 Sum_probs=15.8
Q ss_pred EEEEEcC---ChhHHHHHhhhC
Q psy18160 49 AQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~ 67 (373)
.+++.|+ ||||+++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5777886 999999999864
No 492
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=53.92 E-value=7.3 Score=31.39 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHcch
Q psy18160 199 GLLFMETSAKTAMNVNEIFVEIAKKLPK 226 (373)
Q Consensus 199 ~~~~~evSak~~~gI~~lf~~L~~~i~~ 226 (373)
...++.+.+ ++..++++.+.+...+..
T Consensus 140 ~~~~~~id~-~~~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 140 GLHTYSWDT-GQWSSDEIAKDIIFLVEL 166 (173)
T ss_dssp SSCEEEEET-TTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCCCHHHHHHHHHHHHhC
Confidence 334555554 235788888888877654
No 493
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=53.77 E-value=6.6 Score=33.34 Aligned_cols=19 Identities=0% Similarity=-0.038 Sum_probs=15.7
Q ss_pred EEEEEcC---ChhHHHHHhhhC
Q psy18160 49 AQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~ 67 (373)
++++.|+ ||||+.++|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788887 999999999753
No 494
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.61 E-value=7.1 Score=32.62 Aligned_cols=20 Identities=0% Similarity=-0.112 Sum_probs=16.5
Q ss_pred EEEEEcC---ChhHHHHHhhhCc
Q psy18160 49 AQIWLKD---RVDCMTQIVINVV 68 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~~ 68 (373)
.++++|. |||||++.+.+.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 5777776 9999999998764
No 495
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.35 E-value=3.1 Score=35.00 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=17.3
Q ss_pred EEEEEccCccccceeeEEeee
Q psy18160 299 KLVLLGESAVGKSSLVLRFVR 319 (373)
Q Consensus 299 k~~~iG~~~vGks~l~~~~~~ 319 (373)
.++++|.+|+||||++..+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999876543
No 496
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=53.18 E-value=1.7 Score=36.43 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=0.0
Q ss_pred EEEEccCccccceeeEEee
Q psy18160 300 LVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 300 ~~~iG~~~vGks~l~~~~~ 318 (373)
++++|.+|+|||+++.+++
T Consensus 9 i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
No 497
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=53.13 E-value=3.8 Score=33.01 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=0.0
Q ss_pred ceEEEEEccCcccccee
Q psy18160 297 QYKLVLLGESAVGKSSL 313 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l 313 (373)
.+-+++.|.+|+|||++
T Consensus 1 k~~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 1 IKVILITGMPGSGKSEF 17 (179)
T ss_dssp -CEEEEECCTTSCHHHH
T ss_pred CcEEEEECCCCCCHHHH
No 498
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=53.06 E-value=7.8 Score=35.93 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=17.2
Q ss_pred CCcEEEEEEcC---ChhHHHHHhh
Q psy18160 45 SDCMAQIWLKD---RVDCMTQIVI 65 (373)
Q Consensus 45 ~~~i~ivvlG~---GKTsLl~rl~ 65 (373)
...+|+++||. ||||++.++-
T Consensus 5 ~~~~klLlLG~geSGKSTi~KQmk 28 (327)
T 3ohm_A 5 RRELKLLLLGTGESGKSTFIKQMR 28 (327)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCccHHHHHHHHH
Confidence 35689999996 9999998753
No 499
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=53.02 E-value=10 Score=30.80 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=14.9
Q ss_pred EEEEEcC---ChhHHHHHhhhC
Q psy18160 49 AQIWLKD---RVDCMTQIVINV 67 (373)
Q Consensus 49 ~ivvlG~---GKTsLl~rl~~~ 67 (373)
.++++|. |||||++.+.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5667775 999999998753
No 500
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=52.80 E-value=3.7 Score=36.04 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.2
Q ss_pred ceEEEEEccCccccceeeEEee
Q psy18160 297 QYKLVLLGESAVGKSSLVLRFV 318 (373)
Q Consensus 297 ~~k~~~iG~~~vGks~l~~~~~ 318 (373)
...+++.|.+|+||||+++++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHH
Confidence 4667899999999999998886
Done!