RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18160
(373 letters)
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 225 bits (576), Expect = 2e-73
Identities = 84/153 (54%), Positives = 105/153 (68%), Gaps = 22/153 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF +QT+ ++D T++FEIWDTAGQERYH+LAPMYYR A AAIIV+D+TNQ
Sbjct: 47 AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ--------- 97
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
+F RAK WV+ELQ PN+V+ALAGNK+DL R V + + YA
Sbjct: 98 ------------ASFERAKKWVQELQAQGNPNMVMALAGNKSDL-LDARKVTAEDAQTYA 144
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ENGL FMETSAKTA NV EIF EIA++LP+ +
Sbjct: 145 QENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177
Score = 73.3 bits (181), Expect = 1e-15
Identities = 26/42 (61%), Positives = 29/42 (69%)
Query: 290 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K KLVLLG+ GKSSLVLRFV+ QF E+QESTIG
Sbjct: 5 AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG 46
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 223 bits (571), Expect = 2e-72
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 27/181 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
F+++T+ L+D T+R ++WDTAG ER+ +L P Y R++ A++VYDITN
Sbjct: 51 IDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNV--------- 101
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
++F + W+ +++ +++I L GNK DL +R V EGE A
Sbjct: 102 ------------NSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIEEGERKA 148
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQGGRRLVETAEAPKTSNC 250
+E ++F+ETSAK NV ++F +A LP E +L + E P +
Sbjct: 149 KELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGG 208
Query: 251 C 251
C
Sbjct: 209 C 209
Score = 71.2 bits (175), Expect = 1e-14
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 282 GRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
G + ++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 1 GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 50
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 222 bits (568), Expect = 3e-72
Identities = 68/153 (44%), Positives = 94/153 (61%), Gaps = 22/153 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A+F+T+TV + +F IWDTAGQER+H+LAPMYYR + AA+IVYDIT Q
Sbjct: 58 ASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQ--------- 108
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
D+F K WVKEL+ P NIV+A+AGNK DL + R V + + YA
Sbjct: 109 ------------DSFYTLKKWVKELKEHGPENIVMAIAGNKCDL-SDIREVPLKDAKEYA 155
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
E G + +ETSAK A+N+ E+F I++++P +
Sbjct: 156 ESIGAIVVETSAKNAINIEELFQGISRQIPPLD 188
Score = 75.3 bits (186), Expect = 3e-16
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
M +S++ + + G + I + K+ LLG++ VGKSS+V RFV+ F
Sbjct: 1 MGSSHHHHHHSSGLV------PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP 54
Query: 329 TIG 331
TIG
Sbjct: 55 TIG 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 221 bits (566), Expect = 3e-72
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 22/151 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A+F+T+TV + +F IWDTAG ER+ LAPMYYR + AAIIVYDIT +
Sbjct: 41 ASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE--------- 91
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
+TF K+WV+EL++ PP+IV+A+AGNK DL T R V + + YA
Sbjct: 92 ------------ETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL-TDVREVMERDAKDYA 138
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
+ +F+ETSAK A+N+NE+F+EI++++P
Sbjct: 139 DSIHAIFVETSAKNAININELFIEISRRIPS 169
Score = 75.2 bits (186), Expect = 2e-16
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ + + K+ LLG++ VGKSS++ RFV F TIG
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 220 bits (564), Expect = 6e-72
Identities = 98/151 (64%), Positives = 118/151 (78%), Gaps = 22/151 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQTVCLDD T++FEIWDTAGQERYH+LAPMYYR AQAAI+VYDITN+
Sbjct: 41 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE--------- 91
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
++F RAK+WVKELQR A PNIVIAL+GNKADL ++R V++ E ++YA
Sbjct: 92 ------------ESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYA 138
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
++N LLFMETSAKT+MNVNEIF+ IAKKLPK
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
Score = 74.5 bits (184), Expect = 3e-16
Identities = 35/38 (92%), Positives = 38/38 (100%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 217 bits (556), Expect = 1e-70
Identities = 53/153 (34%), Positives = 87/153 (56%), Gaps = 22/153 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
F+++T+ L+D T+R ++WDTAGQER+ +L P Y R++ A++VYDITN
Sbjct: 49 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNT--------- 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
++F + W+ +++ +++I L GNK DL + +R V EGE A
Sbjct: 100 ------------NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL-SDKRQVSTEEGERKA 146
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+E ++F+ETSAK NV ++F +A LP +
Sbjct: 147 KELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179
Score = 71.1 bits (175), Expect = 7e-15
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 288 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ + ++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 5 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 48
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 216 bits (554), Expect = 2e-70
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 22/151 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A+F+T+ + + + IWDTAGQER+H L P+YYR++ AI+VYDIT++
Sbjct: 41 ASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE--------- 91
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
D+F + K+WVKEL++M I + + GNK DL R V E E+YA
Sbjct: 92 ------------DSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQEAESYA 138
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
E G TSAK + E+F+++ K++ +
Sbjct: 139 ESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
Score = 70.2 bits (173), Expect = 1e-14
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
++ +K+VLLGE VGK+SLVLR+ +F++ +T+G
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 40
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 199 bits (509), Expect = 1e-63
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 76 AAFITQTVCLDD-VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
F + + L + + +IWD GQ + Y AQ ++VYDITN +F +
Sbjct: 41 LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED 100
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
W VK++ + ++AL GNK DL R ++ + +
Sbjct: 101 WYTV------------------VKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRF 141
Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230
+ENG SAKT +V F ++A ++ ++N
Sbjct: 142 CQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177
Score = 66.8 bits (164), Expect = 2e-13
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 296 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
Q K+V+LG+ A GK+SL F + F + + TIG
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG 40
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 198 bits (505), Expect = 2e-62
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 21/156 (13%)
Query: 76 AAFITQTVCLDDVTIRFEIW--DTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
+ V + D T+ E++ DTAG + Y Y+ AI+V+D+++ ++F K
Sbjct: 57 VEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK 116
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
+W + L+ P + L NK DLP R V +
Sbjct: 117 AWFELLKSARP------------------DRERPLRAVLVANKTDLPPQRHQVRLDMAQD 158
Query: 194 YAEENGLLFMETSAK-TAMNVNEIFVEIAKKLPKKE 228
+A N L F + SA + + F+ IA +
Sbjct: 159 WATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194
Score = 60.8 bits (148), Expect = 4e-11
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 279 GRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIG 331
+ + K+ ++GE+ VGKS+L+ F +F + T G
Sbjct: 2 AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG 56
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 195 bits (498), Expect = 2e-61
Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 22/151 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
+ I+F +WDTAGQE+ L +YY A AI+ +D+T++
Sbjct: 49 HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSR----------- 97
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
T WVKE Q + I + NK D+ +R+ + +
Sbjct: 98 ----------ITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK-NRQKISKKLVMEVLKG 146
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ E SAKTA N F+ +A+ +
Sbjct: 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177
Score = 67.7 bits (166), Expect = 2e-13
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 289 DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
+ + YK+ L+G+ VGK++ + R + G+F + +T+G
Sbjct: 3 GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 195 bits (496), Expect = 3e-61
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 25/178 (14%)
Query: 53 LKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYR 112
+K+ + IN + + I+F+IWDTAGQERY ++ P+YYR
Sbjct: 56 IKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYR 115
Query: 113 NAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIAL 172
A AI+V+DI+N +T RAK+WV +L+ N +I L
Sbjct: 116 GATCAIVVFDISNSNTLDRAKTWVNQLK-----------------------ISSNYIIIL 152
Query: 173 AGNKADLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230
NK D ++ V+ E + YA++N LLF++TSAKT N+ IF +A+++ K +N
Sbjct: 153 VANKIDK--NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208
Score = 65.2 bits (159), Expect = 1e-12
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 294 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
K YK VLLGES+VGKSS+VLR + FHE +TIG
Sbjct: 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGAS 43
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 193 bits (494), Expect = 4e-61
Identities = 55/150 (36%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+TV L ++ +IWDTAG ERY + YYR A A++V+D+T
Sbjct: 62 FSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKH----------- 110
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
T+ + W+KEL A IV+ L GNK+DL + R V E +AE
Sbjct: 111 ----------QTYAVVERWLKELYDHAEATIVVMLVGNKSDL-SQAREVPTEEARMFAEN 159
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
NGLLF+ETSA + NV F + K++ K
Sbjct: 160 NGLLFLETSALDSTNVELAFETVLKEIFAK 189
Score = 64.9 bits (159), Expect = 1e-12
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 272 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
S++ + + G + R ++ +K+VL+GES VGK++L+ RF R +F +TIG
Sbjct: 3 SSHHHHHHSSGLVPRGSEDYN---FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG 59
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 193 bits (492), Expect = 1e-60
Identities = 57/147 (38%), Positives = 77/147 (52%), Gaps = 22/147 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAG ERY + YYR A A++VYDI
Sbjct: 66 FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH----------- 114
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
T+ + W+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 115 ----------LTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEK 163
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL 224
NGL F+ETSA + NV F I ++
Sbjct: 164 NGLSFIETSALDSTNVEAAFQTILTEI 190
Score = 61.8 bits (151), Expect = 2e-11
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 63
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 193 bits (492), Expect = 1e-60
Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 31/179 (17%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+++ +D TI+ +IWDTAGQERY + YYR A A++VYDI
Sbjct: 42 FATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH----------- 90
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
T+ + W+KEL+ A NIVI L GNK+DL R V E A+AE+
Sbjct: 91 ----------LTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEK 139
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK---------EVNNGQGGRRLVETAEAPKT 247
N L F+ETSA + NV E F I ++ + ++ G +V+ + P T
Sbjct: 140 NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTT 198
Score = 61.9 bits (151), Expect = 2e-11
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 39
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 191 bits (488), Expect = 5e-60
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 23/182 (12%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
A F+T+ V +DD + +IWDTAGQER+ +L +YR A ++V+D+T +TF SW
Sbjct: 43 ADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
E A P P N + GNK DL +R+
Sbjct: 103 RDEFLIQASPR-----------------DPENFPFVVLGNKIDLE-NRQVATKRAQAWCY 144
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE-----VNNGQGGRRLVETAEAPKTSNC 250
+N + + ETSAK A+NV + F IA+ K+E N +L + A ++
Sbjct: 145 SKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAES 204
Query: 251 CN 252
C+
Sbjct: 205 CS 206
Score = 61.9 bits (151), Expect = 2e-11
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
T K K+++LG+S VGK+SL+ ++V +F ++TIG
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 42
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 190 bits (484), Expect = 7e-60
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 23/150 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ + + ++D +R +WDTAGQE + + YYR AQA ++V+ T++++F SW +
Sbjct: 42 FLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE 101
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ +I AL NK DL C++ E E A+
Sbjct: 102 KVVAEV----------------------GDIPTALVQNKIDL-LDDSCIKNEEAEGLAKR 138
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
L F TS K +NV+E+F +A+K +K
Sbjct: 139 LKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
Score = 62.5 bits (153), Expect = 5e-12
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 293 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K+V++G AVGKSS++ R+ +G F + + TIG
Sbjct: 1 GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG 39
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 189 bits (482), Expect = 3e-59
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 23/156 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + V +D I+ +IWDTAGQE + ++ YYR A A++VYDIT ++TF
Sbjct: 58 FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN------- 110
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ SW+++ ++ + N+VI L GNK+DL SRR V+ EGEA+A E
Sbjct: 111 --------HL------TSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFARE 155
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
+GL+FMETSAKTA NV E F+ AK++ +K + G
Sbjct: 156 HGLIFMETSAKTACNVEEAFINTAKEIYRK-IQQGL 190
Score = 60.7 bits (148), Expect = 4e-11
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 281 GGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ +K +++G++ VGKS L+L+F +F + TIG
Sbjct: 5 HHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG 55
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 188 bits (480), Expect = 4e-59
Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 22/149 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+ + + I+ +IWDTAGQER+ + YYR A A++VYDIT + T+
Sbjct: 52 FGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN------- 104
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ SW+ + + + PN VI L GNKADL ++R V Y E + +AEE
Sbjct: 105 --------HL------SSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEAKQFAEE 149
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
NGLLF+E SAKT NV + F+E AKK+ +
Sbjct: 150 NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
Score = 61.1 bits (149), Expect = 2e-11
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K +++G+ VGKS L+ +F +F TIG
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG 49
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 187 bits (478), Expect = 1e-58
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 23/156 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F ++ V + T++ +IWDTAGQER+ ++ YYR A A++VYDIT+++T+
Sbjct: 62 FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN------- 114
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ +W+ + + +A PNIV+ L GNK DL R V + E +A+E
Sbjct: 115 --------SL------AAWLTDARTLASPNIVVILCGNKKDL-DPEREVTFLEASRFAQE 159
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
N L+F+ETSA T NV E F++ A+ + ++++G+
Sbjct: 160 NELMFLETSALTGENVEEAFLKCARTI-LNKIDSGE 194
Score = 62.6 bits (153), Expect = 1e-11
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 272 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
S++ + + G + R + + +K +++G + GKS L+ +F+ +F + TIG
Sbjct: 3 SSHHHHHHSSGLVPRGSIWSD---FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG 59
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 186 bits (475), Expect = 5e-58
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ +TV ++ ++ +IWDTAGQER+ ++ YYR+A A I+ YDIT +++F
Sbjct: 63 FMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFR------- 115
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ W++E+++ A ++ L GNK DL RR V E ++E
Sbjct: 116 --------CL------PEWLREIEQYASNKVITVLVGNKIDLA-ERREVSQQRAEEFSEA 160
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+ ++ETSAK + NV ++F+++A +L +
Sbjct: 161 QDMYYLETSAKESDNVEKLFLDLACRLISE 190
Score = 60.7 bits (148), Expect = 4e-11
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 271 NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
S++ + + G + R + + +K+VL+G + VGK+ LV RF +G F Q +TI
Sbjct: 2 GSSHHHHHHSSGLVPRGSMEDYD--FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI 59
Query: 331 G 331
G
Sbjct: 60 G 60
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 185 bits (472), Expect = 7e-58
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 26/162 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F ++ + + ++ +IWDTAGQER+ ++ YYR A A++VYDIT+++T+
Sbjct: 47 FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN------- 99
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ +W+ + + +A NIVI L GNK DL + R V + E +A+E
Sbjct: 100 --------AL------TNWLTDARMLASQNIVIILCGNKKDL-DADREVTFLEASRFAQE 144
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAK----KLPKKEVNNGQGG 235
N L+F+ETSA T NV E FV+ A+ K+ E++ + G
Sbjct: 145 NELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMG 186
Score = 59.1 bits (144), Expect = 1e-10
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K +++G + GKS L+ +F+ +F + TIG
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG 44
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 185 bits (471), Expect = 2e-57
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 31/183 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV LD T++ +IWDTAGQER+ T+ YYR + IIVYD+T+Q++F
Sbjct: 45 FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN------- 97
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ K W++E+ R A ++ L GNK DL +R VEY + +A+
Sbjct: 98 --------GV------KMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADA 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK---------EVNNGQGGRRLVETAEAPKTS 248
N + F+ETSA + NV + F+ +A+++ + G ++ T
Sbjct: 143 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTG 202
Query: 249 NCC 251
CC
Sbjct: 203 GCC 205
Score = 57.7 bits (140), Expect = 6e-10
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 184 bits (468), Expect = 4e-57
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 26/155 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ +D ++WDTAGQER+ ++A Y+R A +++YD+T + +F
Sbjct: 65 FQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFL------- 117
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLP-----TSRRCVEYSEGE 192
NI + WV ++ A + I L GNKAD+ ++CV GE
Sbjct: 118 --------NI------REWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE 163
Query: 193 AYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
A G LF ETSAK N+ E + +A+++ K+
Sbjct: 164 KLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
Score = 63.8 bits (156), Expect = 3e-12
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
M +S++ + + G + R + ++ + YK+VL G++AVGKSS ++R + +F E +
Sbjct: 1 MGSSHHHHHHSSGL-VPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA 59
Query: 329 TIG 331
T+G
Sbjct: 60 TLG 62
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 184 bits (469), Expect = 6e-57
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 25/153 (16%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
+ I+F +WDTAGQE++ L YY AQ AII++D+T++ T+ +W
Sbjct: 50 VEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 109
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
++L R+ NI I L GNK D+ R+ + +
Sbjct: 110 HRDLVRVC----------------------ENIPIVLCGNKVDIK-DRKVKA--KSIVFH 144
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ L + + SAK+ N + F+ +A+KL
Sbjct: 145 RKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
Score = 64.3 bits (157), Expect = 4e-12
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 184 bits (468), Expect = 7e-57
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F T+T+ ++ I+ +IWDTAGQERY + YYR A A+IVYDI+
Sbjct: 50 FATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKS----------- 98
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ W+ EL+ A N+ + L GNK+DL R V E + +A+E
Sbjct: 99 ----------SSYENCNHWLSELRENADDNVAVGLIGNKSDL-AHLRAVPTEESKTFAQE 147
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
N LLF ETSA + NV++ F E+ + +K
Sbjct: 148 NQLLFTETSALNSENVDKAFEELINTIYQK 177
Score = 61.3 bits (149), Expect = 3e-11
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K+VL+G+S VGKS+L+ RF + +F+ +STIG
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG 47
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 182 bits (464), Expect = 2e-56
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F
Sbjct: 70 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN------- 122
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
N+ K W++E+ R A N+ L GNK DL T+++ V+Y+ + +A+
Sbjct: 123 --------NV------KQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADS 167
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 168 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 197
Score = 58.4 bits (142), Expect = 3e-10
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 67
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 182 bits (463), Expect = 2e-56
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD TI+ +IWDTAGQER+ T+ YYR A I+VYD+T+Q++F
Sbjct: 53 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN------- 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
N+ K W++E+ R A N+ L GNK DL T+++ V+Y+ + +A+
Sbjct: 106 --------NV------KQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADS 150
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F+ETSAK A NV + F+ +A ++ K+
Sbjct: 151 LGIPFLETSAKNATNVEQSFMTMAAEIKKR 180
Score = 58.8 bits (143), Expect = 2e-10
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 50
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 179 bits (457), Expect = 1e-55
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 19/155 (12%)
Query: 76 AAFITQTVCLD-DVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
A F+T+ V +D D ++WDTAGQER+ +L +YR A ++VYD+TN +F KS
Sbjct: 43 ADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS 102
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
W E A N +P + GNK D S++ V +
Sbjct: 103 WRDEFLVHANVN-----------------SPETFPFVILGNKIDAEESKKIVSEKSAQEL 145
Query: 195 AEENG-LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
A+ G + TSAK A+NV+ F EIA+ ++
Sbjct: 146 AKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180
Score = 59.9 bits (146), Expect = 5e-11
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K+++LG+S VGK+SL+ R+V ++ + ++TIG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG 42
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 180 bits (458), Expect = 1e-55
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ +D + IWDTAGQER+ TL P YYR AQ I+VYD+T +DTF + +W+
Sbjct: 52 FKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN 111
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
EL+ N +IV L GNK D R V+ +EG +A +
Sbjct: 112 ELETYCTRN--------------------DIVNMLVGNKIDK--ENREVDRNEGLKFARK 149
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+ +LF+E SAKT V F E+ +K+ +
Sbjct: 150 HSMLFIEASAKTCDGVQCAFEELVEKIIQT 179
Score = 59.2 bits (144), Expect = 1e-10
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K++++GES VGKSSL+LRF F +TIG
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG 49
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 178 bits (453), Expect = 8e-55
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 23/151 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ + ++ +IWDTAGQER+ T+ YYR+A AI+ YDIT + +F
Sbjct: 66 FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFL------- 118
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ W++++++ A NIV L GNK+DL + R V +E ++ AE
Sbjct: 119 --------SV------PHWIEDVRKYAGSNIVQLLIGNKSDL-SELREVSLAEAQSLAEH 163
Query: 198 NGLL-FMETSAKTAMNVNEIFVEIAKKLPKK 227
+L +ETSAK + NV E F+ +A +L +
Sbjct: 164 YDILCAIETSAKDSSNVEEAFLRVATELIMR 194
Score = 61.9 bits (151), Expect = 2e-11
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 272 SNNSNSNGRGGRIQRPNDQTQAKI-CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
S++ + + G + R + + +KLVL+G+++VGK+ +V RF G F E Q STI
Sbjct: 3 SSHHHHHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62
Query: 331 G 331
G
Sbjct: 63 G 63
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 176 bits (449), Expect = 4e-54
Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV ++ ++ ++WDTAGQER+ T+ YYR A I+VYD+T++ TF
Sbjct: 57 FKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT------- 109
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
NI K W K + A + L GNK+D+ R V +GEA A+E
Sbjct: 110 --------NI------KQWFKTVNEHANDEAQLLLVGNKSDM--ETRVVTADQGEALAKE 153
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKL-----PKKEVNNGQGGRRLVETAEAPKTSNCCN 252
G+ F+E+SAK NVNEIF +AK + K V G G + S+ N
Sbjct: 154 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSN 213
Score = 56.2 bits (136), Expect = 2e-09
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 54
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 175 bits (445), Expect = 7e-54
Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D V ++ ++WDTAGQER+ ++ YYR+A A +++YD+TN+ +F
Sbjct: 48 FRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD------- 100
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
NI ++W+ E+ A ++ + L GNK D R V+ +GE A+E
Sbjct: 101 --------NI------QAWLTEIHEYAQHDVALMLLGNKVDS-AHERVVKREDGEKLAKE 145
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
GL FMETSAKT +NV+ F IAK+L ++
Sbjct: 146 YGLPFMETSAKTGLNVDLAFTAIAKELKRR 175
Score = 52.2 bits (126), Expect = 3e-08
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQE-STIG 331
+K++L+G+S VGK+ L++RF G F ST+G
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG 45
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 175 bits (445), Expect = 7e-54
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 25/153 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYH-TLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
F + V +D I+ ++WDTAGQER+ ++ YYRN A + VYD+TN +F +W+
Sbjct: 57 FRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI 116
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAE 196
+E ++ N +I L GNK DL S V + +A+
Sbjct: 117 EECKQHLLAN--------------------DIPRILVGNKCDL-RSAIQVPTDLAQKFAD 155
Query: 197 ENGLLFMETSAKTAM---NVNEIFVEIAKKLPK 226
+ + ETSAK +V IF+ +A KL
Sbjct: 156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188
Score = 60.3 bits (147), Expect = 5e-11
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++++G+S VGK+ L RF G+F + E+TIG
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 54
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 172 bits (438), Expect = 5e-53
Identities = 75/154 (48%), Positives = 96/154 (62%), Gaps = 23/154 (14%)
Query: 76 AAFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSW 135
AAF+TQ V +++ T++FEIWDTAGQER+ +LAP YYRNAQAA++VYD+T
Sbjct: 38 AAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP--------- 88
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL--PTSRRCVEYSEGEA 193
+F +A+ WVKEL A +I+IAL GNK D R V EGE
Sbjct: 89 ------------QSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEK 136
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
AEE GLLF ETSAKT NVN++F+ I +K+P K
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
Score = 75.6 bits (186), Expect = 1e-16
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 295 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ KLVLLGE+AVGKSS+VLRFV F E +E TIG
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 173 bits (441), Expect = 5e-53
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ +D I+ +IWDTAG ERY T+ YYR A I++YDITN+++F
Sbjct: 45 FKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFN------- 97
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ + W +++ + N + L GNK D+ R V G A+
Sbjct: 98 --------AV------QDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADH 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK----------EVNNGQGGRRLVETAEAPK 246
G F E SAK +NV + F + + +K V + G +L + P
Sbjct: 143 LGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPH 201
Score = 55.7 bits (135), Expect = 2e-09
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++++G S+VGK+S + R+ F ST+G
Sbjct: 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 42
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 173 bits (440), Expect = 6e-53
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV D I+ +IWDTAGQERY T+ YYR A +++YDI NQ++F
Sbjct: 59 FKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFA------- 111
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ + W +++ + N + L GNK DL R V +G A++
Sbjct: 112 --------AV------QDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADD 156
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G F E SAK +NV ++F + + +K
Sbjct: 157 LGFEFFEASAKENINVKQVFERLVDVICEK 186
Score = 56.1 bits (136), Expect = 1e-09
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G S+VGK+S + R+ F ST+G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG 56
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 172 bits (439), Expect = 6e-53
Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 26/161 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +T+ LD I+ +IWDTAGQER+ T+ YYR A ++VYDITN+ +F
Sbjct: 45 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD------- 97
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
NI ++W++ ++ A ++ + GNK D+ +R V GE A +
Sbjct: 98 --------NI------RNWIRNIEEHASADVEKMILGNKCDVN-DKRQVSKERGEKLALD 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAK----KLPKKEVNNGQG 234
G+ FMETSAK +NV F +A+ K+ K G
Sbjct: 143 YGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAAG 183
Score = 55.7 bits (135), Expect = 2e-09
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+L+G+S VGK+ ++ RF F+ STIG
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 42
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 172 bits (439), Expect = 7e-53
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 22/154 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV + ++ +IWDTAGQERY T+ YYR A I++YDITN+++F
Sbjct: 60 FKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN------- 112
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
+ + W +++ + N + L GNK D+ R V +G+ AE+
Sbjct: 113 --------AV------QDWATQIKTYSWDNAQVILVGNKCDM-EEERVVPTEKGQLLAEQ 157
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
G F E SAK ++V + F + + K ++
Sbjct: 158 LGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191
Score = 56.1 bits (136), Expect = 2e-09
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+++G S+VGK+S + R+ F ST+G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG 57
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 172 bits (438), Expect = 7e-53
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F+ + + +D + +IWDTAGQER+ +L +YR + ++ + + + +F +W K
Sbjct: 44 FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 103
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E A P + + GNK D+ S R V E +A+ +
Sbjct: 104 EFIYYADVK-----------------EPESFPFVILGNKIDI--SERQVSTEEAQAWCRD 144
Query: 198 NG-LLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
NG + ETSAK A NV F E +++ E
Sbjct: 145 NGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
Score = 59.1 bits (144), Expect = 1e-10
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++LLG+ VGKSSL+ R+V +F TIG
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG 41
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 171 bits (437), Expect = 7e-53
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 23/154 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV ++ ++ +IWDTAGQER+ T+ YYR A I+VYDIT++ TF
Sbjct: 40 FKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFT------- 92
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
NI K W K + A + L GNK+D+ R V +GEA A+E
Sbjct: 93 --------NI------KQWFKTVNEHANDEAQLLLVGNKSDM--ETRVVTADQGEALAKE 136
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
G+ F+E+SAK NVNEIF +AK + +K +N
Sbjct: 137 LGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
Score = 55.6 bits (135), Expect = 1e-09
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 172 bits (438), Expect = 8e-53
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV ++ ++ +IWDTAGQER+ T+ YYR I+VYD+T+ ++F K W+
Sbjct: 46 FKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLH 105
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
E+ + ++ L GNK D R+ VE + +A +
Sbjct: 106 EINQNC----------------------DDVCRILVGNKNDD-PERKVVETEDAYKFAGQ 142
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
G+ ETSAK +NV E+F I + + + + +N
Sbjct: 143 MGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176
Score = 56.0 bits (136), Expect = 1e-09
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KL+++G+S VGKSSL+LRF F +TIG
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 169 bits (430), Expect = 2e-51
Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 23/151 (15%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F +TV L IR +IWDTAGQER++++ YYR+A+ I+VYDIT ++TF
Sbjct: 63 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFD------- 115
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ W+K + + A + + L GNK D + R + +GE +A++
Sbjct: 116 --------DL------PKWMKMIDKYASEDAELLLVGNKLDCE-TDREITRQQGEKFAQQ 160
Query: 198 -NGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
G+ F E SAK NV+EIF+++ + KK
Sbjct: 161 ITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
Score = 57.2 bits (139), Expect = 5e-10
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 272 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
S++ + + G + R + + + +++++G VGK+SL+ RF F E +ST+G
Sbjct: 3 SSHHHHHHSSGLVPRGSPRPAD--FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG 60
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 165 bits (420), Expect = 1e-49
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
Query: 78 FITQTVCLDD----------VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
F + V + + ++WDTAGQER+ +L ++R+A ++++D+T+Q
Sbjct: 62 FREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ 121
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187
+F ++W+ +LQ A N I L GNKADL +R V
Sbjct: 122 SFLNVRNWMSQLQANAYCE--------------------NPDIVLIGNKADL-PDQREVN 160
Query: 188 YSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+ A++ G+ + ETSA T NV + + + K+
Sbjct: 161 ERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Score = 56.2 bits (136), Expect = 2e-09
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 271 NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
S++ + + G + R + KL+ LG+S VGK++ + R+ +F+ +T+
Sbjct: 2 GSSHHHHHHSSGLVPRGSGDYDY---LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 58
Query: 331 G 331
G
Sbjct: 59 G 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 163 bits (414), Expect = 4e-49
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 31/160 (19%)
Query: 78 FITQTVCLDDV----------TIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQD 127
F + V I ++WDTAG ER+ +L ++R+A ++++D+TN+
Sbjct: 48 FREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQ 107
Query: 128 TFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVE 187
+F ++W+ +LQ A N I L GNK+DL +R V+
Sbjct: 108 SFLNVRNWISQLQMHAY--------------------SENPDIVLCGNKSDL-EDQRAVK 146
Query: 188 YSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
E AE+ G+ + ETSA N++ + + K+
Sbjct: 147 EEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186
Score = 56.1 bits (136), Expect = 1e-09
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K + LG+S VGK+S++ ++ G+F+ +T+G
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG 45
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 161 bits (411), Expect = 1e-48
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
++ V L + DTAGQ+ Y L + ++VY +T+ +F +S ++L
Sbjct: 62 SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL 121
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+ + L GNKADL + R V+ EG+ AE G
Sbjct: 122 HEG--------------------HGKTRVPVVLVGNKADL-SPEREVQAVEGKKLAESWG 160
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGR 236
FME+SA+ IF ++ +++ + E + GQ R
Sbjct: 161 ATFMESSARENQLTQGIFTKVIQEIARVENSYGQERR 197
Score = 64.2 bits (157), Expect = 3e-12
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 269 MANSNNSNSNGRGGRIQRPN--DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 326
M + ++ +S R N Q + K+V+LG VGK+SL +FV G+F E
Sbjct: 1 MHHHHHHSS-------GRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY 53
Query: 327 ESTIG 331
+ T+
Sbjct: 54 DPTVE 58
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 158 bits (403), Expect = 1e-47
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
T+ + ++ ++ DTAGQ+ Y Y + I+VY +T+ +F K +L
Sbjct: 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
M + I I L GNK DL R + Y EG+A AE
Sbjct: 104 LDM--------------------VGKVQIPIMLVGNKKDLH-MERVISYEEGKALAESWN 142
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQG 234
F+E+SAK ++F I + K + QG
Sbjct: 143 AAFLESSAKENQTAVDVFRRIILEAEKMDGACSQG 177
Score = 61.4 bits (150), Expect = 2e-11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE 40
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 153 bits (389), Expect = 1e-45
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V LD ++ +I DTAGQE Y + Y+R+ + + V+ IT ++F + +++
Sbjct: 56 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 115
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
R+ N+ L GNK+DL +R V E + AE+
Sbjct: 116 LRV--------------------KEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWN 154
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
+ ++ETSAKT NV+++F ++ +++ +++ +
Sbjct: 155 VNYVETSAKTRANVDKVFFDLMREIRARKMED 186
Score = 61.8 bits (151), Expect = 1e-11
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 287 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 8 GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 52
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 152 bits (387), Expect = 4e-45
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 21/172 (12%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
Q + D +I DT G ++ + + A I+V+ +T++ + K +
Sbjct: 46 RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLI 105
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
++ + + +I + L GNK D ++R V+ E +A A+E
Sbjct: 106 VQI-------------------KGSVEDIPVMLVGNKCDE--TQREVDTREAQAVAQEWK 144
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC 251
FMETSAK NV E+F E+ ++ ++ G+R + + C
Sbjct: 145 CAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKC 196
Score = 58.0 bits (141), Expect = 3e-10
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
Y++V+ G VGKSSLVLRFV+G F + TI
Sbjct: 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE 42
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 151 bits (384), Expect = 6e-45
Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 26/153 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPM---YYRNAQAAIIVYDITNQDTFGRAKS 134
+ + +D + ++D Q + + A +IV+ +T++ +F +
Sbjct: 39 TYERRIMVDKEEVTLIVYDIWEQGDAG--GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
+ L+ + ++ + L GNK+DL SR V EG
Sbjct: 97 TLLRLRA---------------GR-----PHHDLPVILVGNKSDLARSRE-VSLEEGRHL 135
Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
A +ETSA N E+F +++ +
Sbjct: 136 AGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
Score = 58.7 bits (143), Expect = 1e-10
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++L+GES VGKS+L F Q E
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 150 bits (381), Expect = 4e-44
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 26/157 (16%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPM---YYRNAQAAIIVYDITNQDTFGRAKS 134
+ + +D + ++D Q + + A +IV+ +T++ +F +
Sbjct: 60 TYERRIMVDKEEVTLVVYDIWEQGDAG--GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
+ L+ + ++ + L GNK+DL SR V EG
Sbjct: 118 TLLRLRA---------------GR-----PHHDLPVILVGNKSDLARSRE-VSLEEGRHL 156
Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
A +ETSA N E+F +++ + N
Sbjct: 157 AGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193
Score = 60.7 bits (148), Expect = 5e-11
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
M + ++ +S Q D +K++L+GES VGKS+L F Q E
Sbjct: 1 MHHHHHHSSGRENLYFQGQKD------GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEP 54
Query: 329 TIGGE 333
+
Sbjct: 55 ENPED 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 150 bits (380), Expect = 4e-44
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+DD + EI DTAGQE + R + ++VYDIT++ +F L
Sbjct: 66 RHQATIDDEVVSMEILDTAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+ P N+ + L GNKADL R V EGE A E
Sbjct: 125 DEIK--------------------KPKNVTLILVGNKADL-DHSRQVSTEEGEKLATELA 163
Query: 200 LLFMETSAKTA-MNVNEIFVEIAKKLPKKEV 229
F E SA T N+ EIF E+ +++ ++ +
Sbjct: 164 CAFYECSACTGEGNITEIFYELCREVRRRRM 194
Score = 65.7 bits (161), Expect = 7e-13
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 273 NNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
++ +S+G + Q+ AK + KL + G + VGKS+LV+RF+ +F + T+
Sbjct: 4 HHHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 149 bits (378), Expect = 4e-44
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 21/148 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+++ +D ++D Q+ L A +IVY +T++ +F +A +L
Sbjct: 39 DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL 98
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+R ++ I L GNK+DL R V EG A A
Sbjct: 99 RRAR--------------------QTDDVPIILVGNKSDL-VRSREVSVDEGRACAVVFD 137
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227
F+ETSA NV +F + +++ +
Sbjct: 138 CKFIETSAALHHNVQALFEGVVRQIRLR 165
Score = 53.3 bits (129), Expect = 8e-09
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
YK++LLG VGKS+L F + G
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAG 35
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 150 bits (380), Expect = 7e-44
Identities = 42/174 (24%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V LD ++ +I DTAGQE Y + Y+R+ + + V+ IT ++F + +++
Sbjct: 52 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 111
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
R+ N+ L GNK+DL R+ V E + AE+
Sbjct: 112 LRVK--------------------EDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQWN 150
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNG--QGGRRLVETAEAPKTSNCC 251
+ ++ETSAKT NV+++F ++ +++ +++ + + G++ ++ CC
Sbjct: 151 VNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCC 204
Score = 58.4 bits (142), Expect = 3e-10
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 288 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 48
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 147 bits (373), Expect = 3e-43
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 23/157 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPM--YYRNAQAAIIVYDITNQDTFGRAKSW 135
+T+ +D + DT E+ + A +IVY I ++ +F A
Sbjct: 40 VYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL 99
Query: 136 VKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYA 195
+L+R ++ I L GNKADL R V EG A A
Sbjct: 100 RIQLRR---------------TH-----QADHVPIILVGNKADLARCRE-VSVEEGRACA 138
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNG 232
F+ETSA NV E+F + ++L + ++
Sbjct: 139 VVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDSA 175
Score = 54.5 bits (132), Expect = 4e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
Y++VLLG+ VGK+SL F Q + E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 147 bits (374), Expect = 3e-43
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 21/152 (13%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
T+ +D + R +I DTAGQE + + Y R ++V+ I ++ +F ++
Sbjct: 47 TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI 106
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
R+ + + L GNKADL S+R V SE A+ +
Sbjct: 107 LRVK--------------------DRDDFPVVLVGNKADLE-SQRQVPRSEASAFGASHH 145
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
+ + E SAK +NV+E F ++ + + K +
Sbjct: 146 VAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177
Score = 58.3 bits (142), Expect = 2e-10
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+KLV++G VGKS+L ++F++ F + TI
Sbjct: 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE 43
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 146 bits (372), Expect = 3e-43
Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 21/148 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V LD ++ +I DTAGQE Y + Y+R+ + + V+ IT ++F + +++
Sbjct: 42 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 101
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
R+ N+ L GNK+DL +R V E + A++
Sbjct: 102 LRV--------------------KEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWN 140
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKK 227
+ ++ETSAKT NV+++F ++ +++ +
Sbjct: 141 VNYVETSAKTRANVDKVFFDLMREIRAR 168
Score = 58.3 bits (142), Expect = 2e-10
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+K++++G VGKS+L L+F+ +F E E T
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 146 bits (372), Expect = 4e-43
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 20/151 (13%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
Q + D +I DT G ++ + + A I+VY IT++ + K +++
Sbjct: 41 RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQI 100
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+ + +I I L GNK D + R V+ SE EA A
Sbjct: 101 CEI-------------------KGDVESIPIMLVGNKCDE-SPSREVQSSEAEALARTWK 140
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVN 230
FMETSAK NV E+F E+ ++ V+
Sbjct: 141 CAFMETSAKLNHNVKELFQELLNLEKRRTVS 171
Score = 59.4 bits (145), Expect = 7e-11
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
Y++ + G VGKSSLVLRFV+G F E T+
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 37
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 145 bits (368), Expect = 1e-42
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 78 FITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVK 137
F + + +D EI DTAG E++ ++ +Y +N Q I+VY + NQ +F K
Sbjct: 39 FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRD 98
Query: 138 ELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE 197
++ R+ + + L GNK DL S R V SEG A AEE
Sbjct: 99 QIIRVK--------------------RYEKVPVILVGNKVDLE-SEREVSSSEGRALAEE 137
Query: 198 NGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
G FMETSAK+ V+E+F EI +++
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQMNY 166
Score = 59.4 bits (145), Expect = 6e-11
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+YK+V+LG VGKS+L ++FV G F E + TI
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE 37
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 142 bits (361), Expect = 3e-41
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D T +I DTAGQE Y + Y R + + V+ I N +F + +++
Sbjct: 42 RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI 101
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+R+ ++ + L GNK DLP+ R V+ + + A G
Sbjct: 102 KRVK--------------------DSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYG 139
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC 251
+ F+ETSAKT V++ F + +++ K + + G++ + K+ C
Sbjct: 140 IPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKK-----KKKKSKTKC 186
Score = 58.4 bits (142), Expect = 2e-10
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE 38
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 142 bits (359), Expect = 4e-41
Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 23/153 (15%)
Query: 77 AFITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWV 136
+ + +D T I + AG + A A I V+ + ++++F
Sbjct: 41 EQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLH 95
Query: 137 KELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY-A 195
+L + + + ++ +S R V + A A
Sbjct: 96 GQLSSLRGEGRGGL----------------ALALVGTQDRISA-SSPRVVGDARARALXA 138
Query: 196 EENGLLFMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ + ET A +NV+ +F E+A+K+
Sbjct: 139 DMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171
Score = 63.8 bits (156), Expect = 2e-12
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 332
+ I + +L +LG++ GKSSL+ RF+ G + E T
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE 41
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 141 bits (358), Expect = 6e-41
Identities = 20/164 (12%), Positives = 51/164 (31%), Gaps = 31/164 (18%)
Query: 78 FITQTVCLDD---VTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+ + D + +WD AG+E +++ P + + VYD++
Sbjct: 41 VKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAE----- 95
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR--RCVEYSEGE 192
K W+ ++ A + VI L G D+ + + +
Sbjct: 96 ---------------VDAMKPWLFNIKARASSSPVI-LVGTHLDVSDEKQRKACMSKITK 139
Query: 193 AYAEENGL-----LFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
+ G + + + + ++ I + ++ +
Sbjct: 140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKIRD 183
Score = 55.4 bits (134), Expect = 2e-09
Identities = 9/37 (24%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEY--QESTIG 331
+ KL+++G + GK++L+ + ++ + + Q +T+G
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVG 38
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 140 bits (355), Expect = 1e-40
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 22/147 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D T +I DTAGQE Y + Y R + + V+ I N +F + +++
Sbjct: 41 RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+R+ ++ + L GNK+DL R VE + + A G
Sbjct: 101 KRVK--------------------DSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYG 138
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPK 226
+ ++ETSAKT V + F + +++ +
Sbjct: 139 IPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 59.4 bits (145), Expect = 6e-11
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE 37
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 141 bits (357), Expect = 2e-40
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 78 FITQTVCLDDVTIRFE---IWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+T+ +D + +W+ G+ + + A +IVY IT++ +F +A
Sbjct: 75 TYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQVGDAYLIVYSITDRASFEKASE 132
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
+L+R + +I I L GNK+DL R V SEG A
Sbjct: 133 LRIQLRR---------------AR-----QTEDIPIILVGNKSDL-VRCREVSVSEGRAC 171
Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
A F+ETSA NV E+F I +++ + + +
Sbjct: 172 AVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210
Score = 49.6 bits (119), Expect = 3e-07
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGE 333
Y++VL+GE VGKS+L F + + GE
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE 73
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 139 bits (354), Expect = 2e-40
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ +D+ ++ DTAGQE + + Y R +IVY +T++ +F + + +
Sbjct: 56 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
R+ + + L NK DL R+ V +G+ A +
Sbjct: 116 LRVKDRE--------------------SFPMILVANKVDLMHLRK-VTRDQGKEMATKYN 154
Query: 200 LLFMETSAKTA-MNVNEIFVEIAKKLPKK 227
+ ++ETSAK +NV++ F ++ + + ++
Sbjct: 155 IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
Score = 57.6 bits (140), Expect = 4e-10
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
YKLV++G+ VGKS+L ++F + F + + TI
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE 52
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 148 bits (375), Expect = 3e-40
Identities = 21/148 (14%), Positives = 39/148 (26%), Gaps = 26/148 (17%)
Query: 86 DDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPP 145
+ F WD GQE H + + +++ D T W++ +++
Sbjct: 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG-- 148
Query: 146 NIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFMET 205
+ + NK D S +E + F
Sbjct: 149 --------------------GKSPVIVVMNKIDENPSYN-IEQKKINERFPAIENRFHRI 187
Query: 206 SAKTAMNVNEIFVEIAKKLPKKEVNNGQ 233
S K V I + + + G
Sbjct: 188 SCKNGDGVESIAKSLKSAVLHPDSIYGT 215
Score = 55.4 bits (133), Expect = 1e-08
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 285 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSM 344
R + + + K+ L+G+ GK+SL+ + + F + T G + + +
Sbjct: 29 ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88
Query: 345 PTKNRLNNNVPITF-VW 360
+ + F W
Sbjct: 89 LEND--DELKECLFHFW 103
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 139 bits (353), Expect = 3e-40
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 78 FITQTVCLDDVT---IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKS 134
+T+ +D + I ++W+ G+ + + A +IVY IT++ +F +A
Sbjct: 44 TYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQVGDAYLIVYSITDRASFEKASE 101
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAY 194
+L+R + +I I L GNK+DL R V SEG A
Sbjct: 102 LRIQLRR---------------AR-----QTEDIPIILVGNKSDL-VRXREVSVSEGRAX 140
Query: 195 AEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRR 237
A F+ETSA NV E+F I +++ + + + RR
Sbjct: 141 AVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERR 183
Score = 52.7 bits (127), Expect = 2e-08
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIG 331
Y++VL+GE VGKS+L F + +G
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLG 41
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 138 bits (351), Expect = 7e-40
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D T +I DTAGQE Y + Y R + + V+ I N +F + +++
Sbjct: 59 RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI 118
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
+R+ + ++ + L GNK DLPT R V+ + A+ G
Sbjct: 119 KRVKDSD--------------------DVPMVLVGNKCDLPT--RTVDTKQAHELAKSYG 156
Query: 200 LLFMETSAKTAMNVNEIFVEIAKKLPKKEVNN 231
+ F+ETSAKT V + F + +++ + +
Sbjct: 157 IPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
Score = 59.1 bits (144), Expect = 1e-10
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
M + ++ +S Q +YKLV++G VGKS+L ++ ++ F + +
Sbjct: 1 MHHHHHHSSGRENLYFQGMT--------EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP 52
Query: 329 TIG 331
TI
Sbjct: 53 TIE 55
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 135 bits (341), Expect = 2e-38
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 21/149 (14%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ +D + + DTA + Y A A ++VY + ++ +F + S+++ L
Sbjct: 59 SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELL 117
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENG 199
AK +I L GNK D+ R V +EG A A G
Sbjct: 118 AL----------HAKE--------TQRSIPALLLGNKLDM-AQYRQVTKAEGVALAGRFG 158
Query: 200 LLFMETSAKTAM-NVNEIFVEIAKKLPKK 227
LF E SA +V +F E ++ ++
Sbjct: 159 CLFFEVSACLDFEHVQHVFHEAVREARRE 187
Score = 59.9 bits (146), Expect = 7e-11
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
M + ++ +S Q P + L +LG GKS+L ++F+ +F +
Sbjct: 1 MHHHHHHSSGRENLYFQGPLE--------VNLAILGRRGAGKSALTVKFLTKRFISEYDP 52
Query: 329 TIG 331
+
Sbjct: 53 NLE 55
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 133 bits (338), Expect = 6e-38
Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 27/151 (17%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ + +D + I D G + A + V+ + ++ +F ++ L
Sbjct: 57 KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRL 111
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-PTSRRCVEYSEGEAYAEEN 198
+ + + L G + + + R ++ S + +
Sbjct: 112 CSFRNAS--------------------EVPMVLVGTQDAISAANPRVIDDSRARKLSTDL 151
Query: 199 GLL-FMETSAKTAMNVNEIFVEIAKKLPKKE 228
+ ET A +NV +F ++A+K+
Sbjct: 152 KRCTYYETCATYGLNVERVFQDVAQKVVALR 182
Score = 53.7 bits (130), Expect = 9e-09
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 285 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
R N Q + K+ ++G + GKS+LV R++ G + + + G
Sbjct: 10 GRENLYFQGP--ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 132 bits (334), Expect = 1e-37
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D EI DTAG E++ + +Y +N Q +VY IT Q TF + +++
Sbjct: 41 RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI 100
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-N 198
R VK ++ + L GNK DL R V +G+ A +
Sbjct: 101 LR---------------VK-----DTEDVPMILVGNKCDL-EDERVVGKEQGQNLARQWC 139
Query: 199 GLLFMETSAKTAMNVNEIFVEIAK 222
F+E+SAK+ +NVNEIF ++ +
Sbjct: 140 NCAFLESSAKSKINVNEIFYDLVR 163
Score = 57.9 bits (141), Expect = 3e-10
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE 37
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 106 bits (267), Expect = 1e-27
Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 23/143 (16%)
Query: 82 TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQR 141
+ + +WDTAGQE Y L P+ Y ++ ++ + + N+ +F +
Sbjct: 63 VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTK------ 116
Query: 142 MAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-RCVEYSEGEAYAEENGL 200
W E++ L G K DL V EG+ ++ G
Sbjct: 117 --------------WEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161
Query: 201 L-FMETSAKTAMNVNEIFVEIAK 222
+ ++E S+ + +NE+F +
Sbjct: 162 VAYIEASSVAKIGLNEVFEKSVD 184
Score = 44.6 bits (106), Expect = 1e-05
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 275 SNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
SN+ + + + K+V++G+ AVGK+ L+L F +G+ T+
Sbjct: 1 SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF 57
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 103 bits (259), Expect = 3e-26
Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 34/180 (18%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ V +D + +WDTAGQE Y L P+ YR A ++ + + ++ ++
Sbjct: 47 SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASY---------- 96
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-------RCVEYSEGE 192
N+ W+ EL+R A PN+ I L G K DL + + ++GE
Sbjct: 97 -----ENVLKK-----WMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGE 145
Query: 193 AYAEENGLL-FMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGGRRLVETAEAPKTSNCC 251
++ G ++E S+KT NV +F K V + + + + S C
Sbjct: 146 ELRKQIGAAAYIECSSKTQQNVKAVFDTAI-----KVVLQPPRRKEVPRRRKNHRRSGCS 200
Score = 38.9 bits (91), Expect = 0.001
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 298 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
K V +G+ AVGK+ +++ + +F T+
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV 42
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 102 bits (256), Expect = 3e-26
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 31/148 (20%)
Query: 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
++ T+ +WDTAGQE Y+ L P+ YR A I+ + + ++ ++
Sbjct: 51 VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKK--------- 101
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL---------PTSRRCVEYSEGEAYA 195
W+ EL+ A P + I L G K DL + +GE
Sbjct: 102 -----------WIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149
Query: 196 EENGLL-FMETSAKTAMNVNEIFVEIAK 222
+ G ++E S+K+ NV +F +
Sbjct: 150 KLIGAPAYIECSSKSQENVKGVFDAAIR 177
Score = 39.3 bits (92), Expect = 6e-04
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 331
+ + K V +G+ AVGK+ L++ + F T+
Sbjct: 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF 42
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 100 bits (252), Expect = 3e-25
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
+ + + IWDTAGQ+ Y L P++Y +A ++ +D+T+ ++F
Sbjct: 75 LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSF------------- 121
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEG 191
NI W E+ + I + G K DL V Y G
Sbjct: 122 --DNI-----FNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
+ A G + ++E SA+ NV+ +F E A+
Sbjct: 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
Score = 41.7 bits (98), Expect = 1e-04
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 285 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
++ + K+VL+G+ GK+SL++ F G F E T+
Sbjct: 22 SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 99.8 bits (249), Expect = 5e-25
Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 33/150 (22%)
Query: 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
+D + +WDTAGQE Y L P+ Y + ++ + I + D+
Sbjct: 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK--------- 118
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
W E++ PN+ I L GNK DL + V EG
Sbjct: 119 -----------WTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166
Query: 194 YAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
A ++E SAKT V E+F +
Sbjct: 167 MANRISAFGYLECSAKTKEGVREVFEMATR 196
Score = 40.5 bits (95), Expect = 3e-04
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
M +S++ + + G P A I + KLV++G+ A GK+ L++ F + QF E
Sbjct: 1 MGSSHHHHHHSSG---LVPRGSHMAAI-RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP 56
Query: 329 TI 330
T+
Sbjct: 57 TV 58
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 99.1 bits (247), Expect = 9e-25
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 33/152 (21%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D + +WDTAGQE Y L P+ Y +I + + + +F ++
Sbjct: 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK------- 123
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR-----------RCVEYSEG 191
W E++ PN I L G K DL + + Y +G
Sbjct: 124 -------------WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
A A+E G + ++E SA T + +F E +
Sbjct: 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 269 MANSNNSNSNGRGGRIQRPN--DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 326
M +S++ + + G + R + + + K V++G+ AVGK+ L++ + F
Sbjct: 1 MGSSHHHHHHS-SGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY 59
Query: 327 ESTI 330
T+
Sbjct: 60 IPTV 63
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 97.9 bits (244), Expect = 3e-24
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 33/155 (21%)
Query: 80 TQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKEL 139
+ +D + +WDTAGQE Y L P+ Y + ++ + + + D+
Sbjct: 63 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEK---- 118
Query: 140 QRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEY 188
WV E++ PN+ I L NK DL + V
Sbjct: 119 ----------------WVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRT 161
Query: 189 SEGEAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
+G A A ++E SAKT V E+F +
Sbjct: 162 DDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196
Score = 43.6 bits (103), Expect = 3e-05
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 274 NSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+ +S+G + Q+ + KLV++G+ A GK+ L++ F + +F E T+
Sbjct: 5 HHHSSGVDLGTENLYFQSMIRK---KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 94.8 bits (236), Expect = 4e-23
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 36/161 (22%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D +R ++ DTAGQ+ + L P+ Y N ++ + + + +F
Sbjct: 61 VSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEK------- 113
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEG 191
WV E++ P I L G ++DL + V
Sbjct: 114 -------------WVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIF---VEIAKKLPKKE 228
+ AEE ++E SA T N+ E+F + + +
Sbjct: 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQ 200
Score = 42.0 bits (99), Expect = 9e-05
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 291 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
A+ K VL+G+ AVGK+SLV+ + + T
Sbjct: 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA 53
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 93.7 bits (233), Expect = 6e-23
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 33/152 (21%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D + +WDTAGQE Y L P+ Y ++I + + + +F ++
Sbjct: 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK------- 98
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEG 191
W E++ PN I L G K DL + Y +G
Sbjct: 99 -------------WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 144
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
A A+E G + ++E SA T + +F E +
Sbjct: 145 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
Score = 37.4 bits (87), Expect = 0.003
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
K V++G+ AVGK+ L++ + F T+
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 91.7 bits (228), Expect = 6e-22
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 34/146 (23%)
Query: 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
+D I +WDT+G Y + P+ Y ++ A +I +DI+ +T
Sbjct: 71 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK--------- 121
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
W E+Q PN + L G K+DL + V Y +G
Sbjct: 122 -----------WKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169
Query: 194 YAEENGLL-FMETSAKTAMN-VNEIF 217
A++ G ++E SA + N V +IF
Sbjct: 170 MAKQIGAATYIECSALQSENSVRDIF 195
Score = 42.4 bits (100), Expect = 8e-05
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 269 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 328
++ ++ +S+G R + K K+V++G+S GK++L+ F + F E
Sbjct: 3 SSHHHHHHSSGLVPRGSHMDPNQNVKC---KIVVVGDSQCGKTALLHVFAKDCFPENYVP 59
Query: 329 TI 330
T+
Sbjct: 60 TV 61
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 90.5 bits (225), Expect = 9e-22
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 34/151 (22%)
Query: 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
+D I +WDT+G Y + P+ Y ++ A +I +DI+ +T
Sbjct: 50 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK--------- 100
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
W E+Q PN + L G K+DL + V Y +G
Sbjct: 101 -----------WKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148
Query: 194 YAEENGLL-FMETSAKTAMN-VNEIFVEIAK 222
A++ G ++E SA + N V +IF
Sbjct: 149 MAKQIGAATYIECSALQSENSVRDIFHVATL 179
Score = 40.8 bits (96), Expect = 2e-04
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 297 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+ K+V++G+S GK++L+ F + F E T+
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 88.3 bits (219), Expect = 6e-21
Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 33/150 (22%)
Query: 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
+ ++DTAGQE Y L P+ Y +I + + N +F K
Sbjct: 61 VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEE--------- 111
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
WV EL+ A PN+ L G + DL + + +G+
Sbjct: 112 -----------WVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159
Query: 194 YAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
A+E G ++E SA T + +F E
Sbjct: 160 LAKEIGACCYVECSALTQKGLKTVFDEAII 189
Score = 42.1 bits (99), Expect = 9e-05
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 278 NGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
+ GR + + K V++G+ AVGK+ L++ + F E T+
Sbjct: 2 SPGAGRSSMAHGPGALML---KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 88.4 bits (219), Expect = 1e-20
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 41/163 (25%)
Query: 85 LDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
++ + +WDT+G Y + P+ Y ++ A ++ +DI+ +T A
Sbjct: 70 TEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKK--------- 120
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEGEA 193
W E+ P+ + L G K DL + + Y +G A
Sbjct: 121 -----------WRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168
Query: 194 YAEENGLL-FMETSAKTAM-NVNEIFVEIA-------KKLPKK 227
A++ G ++E SA T+ +++ IF + LP+K
Sbjct: 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLPQK 211
Score = 42.9 bits (101), Expect = 5e-05
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 277 SNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 330
S+GR + Q + + KLVL+G+ GK++++ + + E T+
Sbjct: 8 SSGRENLYFQGRA-PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 60
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 84.3 bits (208), Expect = 8e-19
Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 28/167 (16%)
Query: 86 DDVTIRFEIW-------DTAGQERYHTLAPMYYRNAQAAIIVY----DITNQDTFGRAKS 134
D V + I D Q T Y + A A + D G +
Sbjct: 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQD 150
Query: 135 WVKELQRMAPPNID--------------TFGRAKSWVKELQRMAPP-NIVIALAGNKADL 179
+ ++ +D F +V L I + K D
Sbjct: 151 FEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE 210
Query: 180 PTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPK 226
R + + A +++N L +ETSA++ +NV+ F + + + K
Sbjct: 211 -GVERYIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLVQLIDK 255
Score = 35.0 bits (80), Expect = 0.027
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 304 GESAVGKSSLVLRFVRGQFHEYQESTI--------GGECQSSHSISFSMPTKNRLNNNVP 355
G+ +GKS L RFVR E+ GG ++ + L + V
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94
Query: 356 ITFVWVIMMIF 366
V F
Sbjct: 95 CKMHIVEQTEF 105
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 85.0 bits (210), Expect = 1e-18
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 83 VCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRM 142
V +D + +WDTAG E Y L P+ Y +I + + + +F
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF------------- 242
Query: 143 APPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-----------PTSRRCVEYSEG 191
++ RAK W E++ PN I L G K DL + Y +G
Sbjct: 243 --HHV----RAK-WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294
Query: 192 EAYAEENGLL-FMETSAKTAMNVNEIFVEIAK 222
A A+E G + ++E SA T + +F E +
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 65.2 bits (159), Expect = 1e-12
Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 21/154 (13%)
Query: 77 AFITQTVCLDDVT---IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAK 133
F + + +V RF ++ GQ Y+ + R + V D A+
Sbjct: 58 FFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAE 117
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEA 193
S + ++ + ++ I + NK DLP +
Sbjct: 118 SM-RNMRENL---------------AEYGLTLDDVPIVIQVNKRDLPDALPVEMVR--AV 159
Query: 194 YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKK 227
E +E A V E E+++ + +
Sbjct: 160 VDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 53.0 bits (128), Expect = 1e-08
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 22/142 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++ +WD GQ YY + A I V D T++D A KEL M
Sbjct: 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLM------- 111
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
LQ + + + NK D P + E S+ ++ + +SA
Sbjct: 112 ----------LQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 161
Query: 208 KTAMNVNEIFVEIAKKLPKKEV 229
+ E + + ++++
Sbjct: 162 IKGEGITEGLDWLIDVIKEEQL 183
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 51.9 bits (125), Expect = 4e-08
Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ F ++D +GQ RY L YY+ QA I V D +++ AK +EL +
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK---EELDTLL------ 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
+ I I NK DL + V+ S+ ++ + A
Sbjct: 118 ---------NHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDA 168
Query: 208 KTAMNVNE 215
+ E
Sbjct: 169 IKGEGLQE 176
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 50.3 bits (121), Expect = 9e-08
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 22/140 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L Y++N Q I V D +++ A+ +EL RM
Sbjct: 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRM------- 93
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
L + V+ + NK DLP + E ++ G T A
Sbjct: 94 ----------LAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 143
Query: 208 KTAMNVNEIFVEIAKKLPKK 227
+ + E ++ +L +
Sbjct: 144 TSGDGLYEGLDWLSNQLRNQ 163
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 50.3 bits (121), Expect = 1e-07
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I FE+WD GQ Y+ + A I V D T++D G AK EL +
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLD----- 117
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
EL+ ++ + NK DLP + E +E G + +++S+
Sbjct: 118 -------EDELR-----KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS 165
Query: 208 KTAMNVNEIFVEIAKKLPKKEVN 230
KT + E + ++L ++ +
Sbjct: 166 KTGDGLVEGMDWLVERLREQGLG 188
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 49.9 bits (120), Expect = 2e-07
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 22/141 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++F++WD G YY N A I V D ++D G +K EL M
Sbjct: 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK---SELVAMLE----- 102
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
+EL+ ++ + NK D+ + E + G ++ +TSA
Sbjct: 103 -------EEELR-----KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSA 150
Query: 208 KTAMNVNEIFVEIAKKLPKKE 228
++E + + L ++
Sbjct: 151 TKGTGLDEAMEWLVETLKSRQ 171
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 49.9 bits (120), Expect = 2e-07
Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 22/140 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
RF +WD GQE + YY N + I+V D T+++ + +EL +M
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLA----- 111
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
++L+ + + NK D+ E S+ +++ A
Sbjct: 112 -------HEDLR-----KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159
Query: 208 KTAMNVNEIFVEIAKKLPKK 227
T + + + +L +
Sbjct: 160 LTGEGLCQGLEWMMSRLKIR 179
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 50.0 bits (120), Expect = 2e-07
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L Y++N Q I V D +++ + ELQ+M
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESA---DELQKMLQ----- 124
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
EL+ + V+ + NK D+P + E ++ G + T A
Sbjct: 125 -------EDELR-----DAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCA 172
Query: 208 KTAMNVNEIFVEIAKKLPKK 227
+ + ++ +L K+
Sbjct: 173 TQGTGLYDGLDWLSHELSKR 192
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 49.6 bits (118), Expect = 3e-07
Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 41/180 (22%)
Query: 65 INVVFYPYLFS-AAFITQTVCLDDVTIR------FEIWDTAGQERYHTLAP---MYYRNA 114
VVF+ + F+ T + I F+IWD GQ + M +R
Sbjct: 37 QKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96
Query: 115 QAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAG 174
A I V D + + R V + ++ P
Sbjct: 97 GALIYVIDAQDDYM-------------------EALTRLHITVSKAYKVNPDMNFEVFI- 136
Query: 175 NKADLPTSRRCVEYSE----------GEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKL 224
+K D + +E +A E+ L F TS ++ E F ++ +KL
Sbjct: 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKVVQKL 195
Score = 30.7 bits (69), Expect = 0.55
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 299 KLVLLGESAVGKSSLVLRFVRGQFHEYQ-------ESTIGGE---CQSSHSISFSM 344
+++L+G GKSS+ FH+ EST +S ++F +
Sbjct: 22 RILLMGLRRSGKSSIQKVV----FHKMSPNETLFLESTNKIYKDDISNSSFVNFQI 73
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 48.8 bits (117), Expect = 4e-07
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 22/140 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ IWD GQ+ + Y+ + I V D ++ + +ELQ +
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ---RELQSLLV----- 113
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
+ L + + NK DLP + C E + SA
Sbjct: 114 -------EERLA-----GATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161
Query: 208 KTAMNVNEIFVEIAKKLPKK 227
T ++ + + +
Sbjct: 162 VTGEDLLPGIDWLLDDISSR 181
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 48.4 bits (116), Expect = 5e-07
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 22/140 (15%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ +WD GQ + Y+ N I V D ++ F +EL +
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG---QELTELLE----- 111
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
++L + + + NK DL T+ E +E + SA
Sbjct: 112 -------EEKLS-----CVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159
Query: 208 KTAMNVNEIFVEIAKKLPKK 227
T V + + K + K
Sbjct: 160 LTGEGVQDGMNWVCKNVNAK 179
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 48.0 bits (115), Expect = 7e-07
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 22/128 (17%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
RF +WD GQE + YY N + I+V D T+++ + +EL +M
Sbjct: 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLA----- 116
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE--GEAYAEENGLLFMETSA 207
++L+ + + NK D+ E S+ +++ A
Sbjct: 117 -------HEDLR-----KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 164
Query: 208 KTAMNVNE 215
T + +
Sbjct: 165 LTGEGLCQ 172
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 47.9 bits (115), Expect = 8e-07
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ ++WD GQ R+ ++ Y R A + + D +Q+ +K EL +
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNL------- 116
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
L + I + + GNK DLP + E E
Sbjct: 117 ----------LDKPQLQGIPVLVLGNKRDLPGALDEKELIE 147
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 47.2 bits (112), Expect = 4e-06
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I F +WD GQ++ L Y++N Q I V D +++ A+ +EL RM
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRM------- 258
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
L + V+ + NK DLP + E ++
Sbjct: 259 ----------LAEDELRDAVLLVFANKQDLPNAMNAAEITD 289
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 45.7 bits (109), Expect = 5e-06
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
+ F +D G + + Y + + D + + +K +EL + +
Sbjct: 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESK---EELDSLM--TDE- 122
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+ N+ I + GNK D P + E
Sbjct: 123 ---------TIA-----NVPILILGNKIDRPEAISEERLRE 149
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 46.4 bits (110), Expect = 9e-06
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
++F +WD GQ++ L YY Q I V D ++D A+ +EL R+
Sbjct: 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRI------- 415
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+ + + ++ A NK DLP + + E E
Sbjct: 416 -------INDREMRDAIILIFA---NKQDLPDAMKPHEIQE 446
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 44.5 bits (106), Expect = 1e-05
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 20/101 (19%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDT 149
I+F +D G + L Y+ + + D + + F A+ EL + NI
Sbjct: 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR---VELDALF--NIA- 120
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
EL+ ++ + GNK D P + E
Sbjct: 121 ---------ELK-----DVPFVILGNKIDAPNAVSEAELRS 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 43.6 bits (103), Expect = 2e-05
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 22/99 (22%)
Query: 90 IRFEIWDTAGQERYHTLAPMYYRNAQAAI--IVYDI---TNQDTFGRAKSWVKELQRMAP 144
+ D G + Y + + +++ + + + L +
Sbjct: 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA---EFLVDI-- 145
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSR 183
+ + I I +A NK++L T+R
Sbjct: 146 ------------LSITESSCENGIDILIACNKSELFTAR 172
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 44.2 bits (104), Expect = 4e-05
Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 33/148 (22%)
Query: 90 IRFEIWDTAGQERY-----HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAP 144
+ +WD GQ+ + ++ Q I V+D+ + + +K+++
Sbjct: 52 MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTE-------VLKDIEIF-- 102
Query: 145 PNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL-PTSRRCVEYSEGEAYAEE------ 197
+K+L++ + P+ I + +K DL +R + E
Sbjct: 103 ---------AKALKQLRKYS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152
Query: 198 -NGLLFMETSAKTAMNVNEIFVEIAKKL 224
L+ TS ++ + + +I L
Sbjct: 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSL 179
Score = 30.0 bits (67), Expect = 1.1
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 299 KLVLLGESAVGKSSLV-LRFVRGQFHE--YQESTIGGE---CQSSHSISFSM 344
KL+L+G S GKSS+ + F + +TI E + +++ ++
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNL 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 4e-05
Identities = 51/430 (11%), Positives = 117/430 (27%), Gaps = 147/430 (34%)
Query: 1 YVLIHGT--CG-STLQTIEYALTVRVLKLKTQIPKG-NWFSMMSGKRQSDCMAQIW-LKD 55
VLI G G + + K++ ++ W ++ + + + L
Sbjct: 152 NVLIDGVLGSGKTWVA----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 56 RVDCM-TQIVINVVFYPYLFSAA------FITQTV---CL---DDVTIRFEIWD------ 96
++D T + + + CL +V + W+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSC 266
Query: 97 -----TAGQERYHTLAPMYYRNAQAAIIVYDIT---NQDTFGRAKS------WV------ 136
T R+ + + +A I+ + T + ++
Sbjct: 267 KILLTT----RFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 137 --KELQRMAPPNIDTFG--------RAKSW----VKELQRMAPPNIVIALAGNKADLPTS 182
+E+ P + +W +L +I + N +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT------IIESSLNVLEPAEY 371
Query: 183 RRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIF--------VE-IAKKLPKKEVNNGQ 233
R+ + + + +F SA + + V + KL K
Sbjct: 372 RKM--F---DRLS-----VFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------ 414
Query: 234 GGRRLVETAEAPKTSNCCNTQFVQCKYKSSIHILTMANSNNSNSNGRGGRIQRPNDQT-- 291
LVE + PK + SI + + +++ N+
Sbjct: 415 ---SLVE--KQPK------------ESTISIPSIYLEL-----------KVKLENEYALH 446
Query: 292 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGECQSSHSISFSMPTKNRLN 351
++ + Y + L+ ++ F+ + IG H + P + L
Sbjct: 447 RSIVDHYNI----PKTFDSDDLIPPYLDQYFYSH----IG-----HHLKNIEHPERMTLF 493
Query: 352 NNVPITFVWV 361
V + F ++
Sbjct: 494 RMVFLDFRFL 503
Score = 40.2 bits (93), Expect = 0.001
Identities = 45/350 (12%), Positives = 89/350 (25%), Gaps = 103/350 (29%)
Query: 70 YPYLFSAAFITQTVCLDDVTIRFEIWDTAGQ-ERYHTLAPMYYRNAQAAIIVYDITNQDT 128
Y +L S I+ E + Y Y + Q Y+++
Sbjct: 91 YKFLMSP-------------IKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQP 136
Query: 129 FGRAKSWVKELQRMAPPNIDTFGRA---KSWV-------KELQRMAPPNIV-IALAGNKA 177
+ + + + EL+ N+ G K+WV ++Q I +
Sbjct: 137 YLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------- 187
Query: 178 DLPTSRRCVEYSEGEAYAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEVNNGQGG-R 236
+ C +L M ++ N K +++ Q R
Sbjct: 188 ---NLKNC---------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 237 RLVETAEAPKT----SNCCNTQ----F-VQCKYKSSIHIL-TMANSNNSNSNGRGGRIQR 286
RL+++ N N + F + CK IL T ++
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK------ILLTTRFKQVTDFLSAATTTHI 289
Query: 287 PNDQTQ------------AKICQYKLVLLGESAVGKSSLVLRFVRGQFHE-------YQE 327
D K + L + + L + + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 328 STIGGECQSSHSISFSM----PTKNR--------LNNNVPIT-----FVW 360
+ + I S+ P + R + I +W
Sbjct: 350 VNCD---KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Score = 38.7 bits (89), Expect = 0.004
Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 47/197 (23%)
Query: 186 VEYSEGEA-YAEENGLLFMETSAKTAMNVNEIFVEIAKKLPKKEV-------NNGQGGRR 237
+++ GE Y ++ L E + + ++ L K+E+ + G R
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 238 LVETAEAPKTSNCCNTQFV----QCKYK---SSIHILTMANS-------------NNSNS 277
L T + + +FV + YK S I S N N
Sbjct: 67 LFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 278 NGRGGRIQRPNDQTQAKICQYKL------VLLGESAVGKSSLVLRFVRGQFHEYQES--- 328
+ R + + +L ++ G GK+ + L ++ Q
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDF 182
Query: 329 -----TIGGECQSSHSI 340
+ C S ++
Sbjct: 183 KIFWLNL-KNCNSPETV 198
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 43.2 bits (102), Expect = 5e-05
Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 22/117 (18%)
Query: 79 ITQTVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAI--IVYDI---TNQDTFGRAK 133
D + D G + Y + + +++ + +
Sbjct: 44 QEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA 103
Query: 134 SWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+ L + + + I I +A NK++L T+R + +
Sbjct: 104 ---EFLVDI--------------LSITESSCENGIDILIACNKSELFTARPPSKIKD 143
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 40.1 bits (94), Expect = 4e-04
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 90 IRFEIWDTAGQERY-HTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNID 148
+ D G E L + +A+A + V D + + + L ++
Sbjct: 54 NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLI---- 107
Query: 149 TFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
+ +P ++ NK D+ ++ +
Sbjct: 108 --------DSMALKNSPSLLIAC---NKQDIAMAKSAKLIQQ 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 5e-04
Identities = 46/271 (16%), Positives = 85/271 (31%), Gaps = 100/271 (36%)
Query: 39 MSGK---RQSDCMAQIWLKDRVDCMTQIVINVVFYPYLFSAAFITQTVCLDD---VTIRF 92
M G + S +W +R D + Y FS I V +++ +TI F
Sbjct: 1631 M-GMDLYKTSKAAQDVW--NRADNHFKDT-------YGFS---ILDIV-INNPVNLTIHF 1676
Query: 93 EIWDTAGQERYHTLAPMYYRNAQAAII----VYDITNQD----TFGRAKSWVKEL----- 139
G+ + M + + ++ N+ TF K L
Sbjct: 1677 G--GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG---LLSATQF 1731
Query: 140 -QRMAPPNIDTFGRAKSWVKELQR--MAPPNIVIA---LAGNKADLPTSRRCVEYSEGEA 193
Q P + +A ++L+ + P + A L G EY+ A
Sbjct: 1732 TQ----PALTLMEKAA--FEDLKSKGLIPADATFAGHSL-G------------EYA---A 1769
Query: 194 YAEENGLLFMETSAKTAMNVNE--IFVEIAKKLPKKEVNNGQGG---------------- 235
A ++ +E+ + V + +++A +P+ E+ G
Sbjct: 1770 LASLADVMSIESLVEV---VFYRGMTMQVA--VPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 236 --RRLVETAEAPKTS--------NCCNTQFV 256
+ +VE +T N N Q+V
Sbjct: 1825 ALQYVVERV-GKRTGWLVEIVNYNVENQQYV 1854
Score = 40.4 bits (94), Expect = 0.001
Identities = 57/418 (13%), Positives = 104/418 (24%), Gaps = 168/418 (40%)
Query: 73 LFSAA------FITQ-------TVCLDDVTIRFEIWDTAGQERYHTLAPMYYRNAQAAII 119
LF A + ++ +R +++ T YH L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEE--LR-DLYQT-----YHVLV------------ 184
Query: 120 VYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRA---KSWVKELQRMAPPNIVIALAGNK 176
D + + EL R F + W++ P +
Sbjct: 185 ------GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-TPDKDYLLSI--- 234
Query: 177 ADLPTS---------------RRCVEYSEGEAYAEENGLLFME----TSAKTAM-NVNEI 216
P S + + ++ GE + G T+ A + E
Sbjct: 235 ---PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 217 FVEIAKK--------------------LP----KKEVNNGQGG-------RRLVETAEAP 245
F +K LP + + N +G L +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-TQEQVQ 350
Query: 246 KTSNCCNTQFVQCKYKSSIHILTMANSNNS-------------NSNGRGGRIQRPNDQTQ 292
N N+ + I ++ N + N R + DQ++
Sbjct: 351 DYVNKTNSHLPA---GKQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 293 AKICQYKLVLLGESAVGKSSLVLRF--VRGQFH-EYQESTIGGECQ--SSHSISFS---- 343
+ KL RF V FH + +++SF+
Sbjct: 407 IPFSERKLK-----------FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 344 -MP---TKN----R-LNNNVP------ITFV---W----------VIMMIFGCGNVPG 373
+P T + R L+ ++ I + W ++ FG G G
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--DFGPGGASG 511
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 40.4 bits (94), Expect = 6e-04
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 25/105 (23%)
Query: 80 TQTVCLDDVT--IRFEIWDTAGQERYHTLA---PMYYRNAQAAIIVYDITNQDTFGRAKS 134
T L+ + I + + GQ Y + +++ A + V D ++
Sbjct: 34 TSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEY------- 86
Query: 135 WVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADL 179
I+ ++ ++ P+I I + +K D
Sbjct: 87 ------------INAITNLAMIIEYAYKVN-PSINIEVLIHKVDG 118
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 36.2 bits (84), Expect = 0.017
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEE-NGLLFMETSAKTAMNVN 214
V + M P +V+ NK D+ + E + E + SA +
Sbjct: 132 VVNLFKEMEIPFVVVV---NKIDVLGE----KAEELKGLYESRYEAKVLLVSALQKKGFD 184
Query: 215 EIFVEIAKKLPKKE 228
+I I++ LP E
Sbjct: 185 DIGKTISEILPGDE 198
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 33.0 bits (76), Expect = 0.090
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 160 LQRMAPPNIVIALAGNKAD-LPTSRRCVE-YSEG-EAYAEENGLLFMETSAKTAMNVNEI 216
L+ + P IV NK D + + + +E E E +F+ SAK N+ +
Sbjct: 118 LRELDIPTIVAV---NKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL 174
Query: 217 FVEIAKKLPKKE 228
I + + +++
Sbjct: 175 KNRIFEVIRERQ 186
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 32.3 bits (73), Expect = 0.19
Identities = 8/96 (8%), Positives = 16/96 (16%), Gaps = 16/96 (16%)
Query: 95 WDTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAK 154
+ I V + + M P + GR
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDE-FSHIMAMTDPAFGSSGRP- 164
Query: 155 SWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
++ L+ C +
Sbjct: 165 --------------LLVLSCISQGDVKRMPCFYLAH 186
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 30.5 bits (70), Expect = 0.73
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADL--PTSRRCVEYSEGEAYAEENGLLFMETSA 207
V + + I L GNK D Y E AE M SA
Sbjct: 100 PTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAE----PRM-LSA 154
Query: 208 KTAMNVNEIFVEIAKKLP 225
V E+ ++ +P
Sbjct: 155 LDERQVAELKADLLALMP 172
>3qva_A Transthyretin-like protein; transthyretin-related protein,
5-hydroxyisourate hydrolase,; HET: PO4; 1.75A
{Klebsiella pneumoniae subsp}
Length = 116
Score = 29.4 bits (66), Expect = 0.76
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 85 LDDVTIRFEIWDTAGQERYH 104
I F I + A ++ +H
Sbjct: 82 FTRAQIDFVIGE-AAEDHFH 100
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 29.8 bits (68), Expect = 0.78
Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 48/149 (32%)
Query: 79 ITQTVCLDDVTIRFEIWDTAGQ------------ERYHTLAPMYYRNAQAAIIVYDITNQ 126
+ + + +D + + I DTAG ER + A + + D T
Sbjct: 43 LREHIHIDGMPLHI-I-DTAGLREASDEVERIGIER--AWQEI--EQADRVLFMVDGTTT 96
Query: 127 DTFGRAKSWVKELQRMAPPNIDTFGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCV 186
D A+ W + + R+ P V+ NKAD+
Sbjct: 97 DAVDPAEIWPEFIARLPAKL-------------------PITVVR---NKADIT------ 128
Query: 187 EYSEGEAYAEENGLLFMETSAKTAMNVNE 215
E +E NG + SA+T V+
Sbjct: 129 --GETLGMSEVNGHALIRLSARTGEGVDV 155
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 30.1 bits (67), Expect = 1.2
Identities = 8/95 (8%), Positives = 16/95 (16%), Gaps = 16/95 (16%)
Query: 96 DTAGQERYHTLAPMYYRNAQAAIIVYDITNQDTFGRAKSWVKELQRMAPPNIDTFGRAKS 155
+ I V + + M P + GR
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDE-FSHIMAMTDPAFGSSGRP-- 249
Query: 156 WVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSE 190
++ L+ C +
Sbjct: 250 -------------LLVLSCISQGDVKRMPCFYLAH 271
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown
functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A
2gpz_A
Length = 114
Score = 27.9 bits (62), Expect = 2.5
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 2/20 (10%)
Query: 85 LDDVTIRFEIWDTAGQERYH 104
++ + F I E YH
Sbjct: 81 FPEIPVEFHINKV--NEHYH 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.9 bits (64), Expect = 2.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 300 LVLLGESAVGKSSLVLRFVRGQFHEY 325
+LLG VGKSSL+ F+ +
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERPGIL 59
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics; HET: MLY MSE; 1.80A {Haemophilus
ducreyi} SCOP: d.145.1.4
Length = 86
Score = 27.1 bits (61), Expect = 2.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 85 LDDVTIRFEIWDTAGQERYHTLA 107
L+DV I E Y T+
Sbjct: 19 LEDVMRALNIHTFPRDENYETIG 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 28.6 bits (65), Expect = 3.7
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 160 LQRMAPPNIVIALAGNKADLPTSRRCV-----EYSEGEAYAEENGLLFMETSAKTAMNVN 214
L ++ + LA NK D + + + + + + SA+T +NV+
Sbjct: 109 LNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLD----IVP-ISAETGLNVD 163
Query: 215 EIFVEIAKKLP 225
I + K LP
Sbjct: 164 TIAAIVRKHLP 174
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 28.4 bits (63), Expect = 4.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 299 KLVLLGESAVGKSSLV 314
++++G+ VGKSS V
Sbjct: 41 TILVMGKGGVGKSSTV 56
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.4 bits (64), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 301 VLLGESAVGKSSLV 314
+ G+S VGKSSL+
Sbjct: 219 IFAGQSGVGKSSLL 232
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.9 bits (62), Expect = 5.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 299 KLVLLGESAVGKSSLV 314
+++LG+ VGKSS V
Sbjct: 38 TVLVLGKGGVGKSSTV 53
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.9 bits (63), Expect = 5.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 301 VLLGESAVGKSSLV 314
V G+S VGKSSL+
Sbjct: 177 VFAGQSGVGKSSLL 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 27.9 bits (63), Expect = 5.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 301 VLLGESAVGKSSLV 314
+ G S VGKSSL+
Sbjct: 173 TMAGLSGVGKSSLL 186
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 27.8 bits (63), Expect = 5.8
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 150 FGRAKSWVKELQRMAPPNIVIALAGNKADLPTSRRCVEYSEGEAYAEENGLLFME---TS 206
+ + + + P N + + NK D + V + E S
Sbjct: 106 WRPRDEEIYQ-NFIKPLNKPVIVVINKIDKIGPAKNVL--PLIDEIHKKHPELTEIVPIS 162
Query: 207 AKTAMNVNEIFVEIAKKLP 225
A N++E+ I K LP
Sbjct: 163 ALKGANLDELVKTILKYLP 181
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.5 bits (62), Expect = 6.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 301 VLLGESAVGKSSLV 314
+L G S VGKSS++
Sbjct: 169 ILAGPSGVGKSSIL 182
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 27.8 bits (63), Expect = 6.4
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 175 NKADLPTSRRCVEYSEGEAYAEE----NGLLFME---TSAKTAMNVNEIFVEIAKKLP 225
NK DLP + + E AEE G+ + SAKT + V ++ + + +P
Sbjct: 131 NKIDLPAA-------DPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 27.8 bits (63), Expect = 7.3
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 175 NKADLPTSRRCVEYSEGEAYAEE----NGLLFME---TSAKTAMNVNEIFVEIAKKLP 225
NK DLP++ + + ++ GL E SAK + + EI I ++P
Sbjct: 133 NKIDLPSA-------DVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center
for structural genomics, JCSG, protein structure INI
PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima}
SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Length = 378
Score = 27.5 bits (62), Expect = 7.9
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 16/52 (30%)
Query: 195 AEENGLLF----METSAKTAMNVNEI------------FVEIAKKLPKKEVN 230
++ +ET K +N EI ++ K LP +
Sbjct: 49 VKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKMVKVLPDEITE 100
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 26.9 bits (59), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 300 LVLLGESAVGKSSLVLRFVR 319
+++ G+S VGKS L V+
Sbjct: 37 VLITGDSGVGKSETALELVQ 56
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 27.3 bits (61), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 153 AKSWVKELQRMAPPNIVIALA 173
AK ++ELQ+ P+I+IA
Sbjct: 171 AKLVIQELQQTEKPDIIIAAT 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.402
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,508,820
Number of extensions: 310934
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 221
Length of query: 373
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 278
Effective length of database: 4,049,298
Effective search space: 1125704844
Effective search space used: 1125704844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)