BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18161
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1
Length = 170
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 109 IQIGSTDFTESDVKRIVTELGKE-YRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRL 167
+ +GST+ TE ++ LG+ +RG+ Y+L NCN FSNE+ + L G++IP ++ L
Sbjct: 74 VDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDL 133
Query: 168 AYFSSCVPFLQRCLP 182
PF Q P
Sbjct: 134 PSEVLSTPFGQALRP 148
>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862)
Length = 168
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 109 IQIGSTDFTESDVKRIVTELGKE-YRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRL 167
+ +G+T+ TE ++ LG+ +RG+ Y+L NCN FSNE+ + L G++IP ++ L
Sbjct: 72 VDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDL 131
Query: 168 AYFSSCVPFLQRCLP 182
PF Q P
Sbjct: 132 PSEVLSTPFGQALRP 146
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 33 EVYGVEYAYG-GHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTE 90
++Y + + G G+ + G+ R+S +D K+ ++ +E++++ + E+D+KR V E
Sbjct: 129 QLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYTKENLEVSGENVVEADLKRFVDE 187
>pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
Length = 388
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 87 IVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNH 146
+V L +E+RG YH+ ++ + TD +G+ Y GD + M
Sbjct: 30 MVAPLAREFRGSHYHMTHRATIVTRVHTD---------AGIIGEAYTGDEHETMFDIDRI 80
Query: 147 FSNELTKILCGQE 159
EL L GQ+
Sbjct: 81 IHEELAPTLIGQD 93
>pdb|2XWO|A Chain A, Siap R147e Mutant In Complex With Sialylamide
Length = 312
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L E+P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKL---EVPNAATNLAY 157
>pdb|2XWK|A Chain A, Siap R147a Mutant In Complex With Neu5ac
Length = 312
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L +P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKLA---VPNAATNLAY 157
>pdb|2XWI|A Chain A, Siap R147k Mutant In Complex With Neu5ac
Length = 308
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L ++P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKL---KVPNAATNLAY 157
>pdb|2XWV|A Chain A, Siap Complex
Length = 312
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L +P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKL---RVPNAATNLAY 157
>pdb|2CEX|A Chain A, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|B Chain B, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|C Chain C, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEX|D Chain D, Structure Of A Sialic Acid Binding Protein (Siap) In The
Presence Of The Sialic Acid Acid Analogue Neu5ac2en
pdb|2CEY|A Chain A, Apo Structure Of Siap
Length = 306
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L +P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKL---RVPNAATNLAY 157
>pdb|3B50|A Chain A, Structure Of H. Influenzae Sialic Acid Binding Protein
Bound To Neu5ac
Length = 310
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L +P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKL---RVPNAATNLAY 157
>pdb|2WYK|A Chain A, Siap In Complex With Neu5gc
Length = 308
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L +P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKL---RVPNAATNLAY 157
>pdb|2V4C|A Chain A, Structure Of Sialic Acid Binding Protein (Siap) In The
Presence Of Kdn
Length = 309
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L +P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKL---RVPNAATNLAY 157
>pdb|2XXK|A Chain A, Siap Complex
Length = 312
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
Query: 18 DYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77
DY G+ S E E + G IS + +LG+ A + ++ GS
Sbjct: 2 DYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSL 61
Query: 78 DFTESDVKRI------VTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRI-----VT 126
DFT ++ R Y Y++ K + T+F + +K++ VT
Sbjct: 62 DFTFAESARFQLFYPEAAVFALPYVISNYNVAQKA----LFDTEFGKDLIKKMDKDLGVT 117
Query: 127 ELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAY 169
L + Y G R N+ N ++ L +P LAY
Sbjct: 118 LLSQAYNGTRQTTSNRAINSIADMKGLKL---RVPDAATNLAY 157
>pdb|3TRK|A Chain A, Structure Of The Chikungunya Virus Nsp2 Protease
Length = 324
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 97 GDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDR 136
GD L+ G S+ I + + + +R++ LG+++R R
Sbjct: 243 GDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSR 282
>pdb|3U52|A Chain A, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|B Chain B, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 511
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 114 TDFTESDVKRIVTELGKEYRGDRYHLMNKNC 144
T FTE D +++ E+ G+RYH + C
Sbjct: 406 TIFTEKDAPTMLSHRQIEHEGERYHFCSDGC 436
>pdb|2INP|A Chain A, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|B Chain B, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 494
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 114 TDFTESDVKRIVTELGKEYRGDRYHLMNKNC 144
T FTE D +++ E+ G+RYH + C
Sbjct: 401 TIFTEKDAPTMLSHRQIEHEGERYHFCSDGC 431
>pdb|2WX9|A Chain A, Crystal Structure Of The Sialic Acid Binding Periplasmic
Protein Siap
pdb|2WYP|A Chain A, Crystal Structure Of Sialic Acid Binding Protein
pdb|2XA5|A Chain A, Structure Of Substrate Binding Protein Siap (A11n) In
Complex With Neu5ac
Length = 312
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 50 GIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRI------VTELGKEYRGDRYHLM 103
G IS + +LG+ A + ++ GS DFT ++ R Y Y++
Sbjct: 34 GKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFALPYVISNYNVA 93
Query: 104 NKGESIQIGSTDFTESDVKRI-----VTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQ 158
K + T+F + +K++ VT L + Y G R N+ N ++ L
Sbjct: 94 QKA----LFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKL--- 146
Query: 159 EIPGWVNRLAY 169
+P LAY
Sbjct: 147 RVPNAATNLAY 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,450,073
Number of Sequences: 62578
Number of extensions: 272417
Number of successful extensions: 724
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 25
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)