Query psy18161
Match_columns 209
No_of_seqs 112 out of 451
Neff 4.6
Searched_HMMs 46136
Date Sat Aug 17 00:08:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324|consensus 100.0 7.5E-51 1.6E-55 349.5 12.9 154 2-197 12-166 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 1.1E-47 2.4E-52 313.7 8.7 142 4-185 1-151 (151)
3 PF04970 LRAT: Lecithin retino 91.8 0.058 1.3E-06 42.2 0.4 31 118-151 89-119 (125)
4 PF05608 DUF778: Protein of un 81.9 1.4 3E-05 36.4 2.9 41 116-156 74-114 (136)
5 PF09601 DUF2459: Protein of u 64.8 8.4 0.00018 32.5 3.6 42 115-157 97-161 (173)
6 KOG0324|consensus 60.6 3.5 7.6E-05 36.5 0.6 19 89-107 95-113 (214)
7 TIGR03544 DivI1A_domain DivIVA 55.9 15 0.00033 22.9 2.8 18 115-132 17-34 (34)
8 KOG3150|consensus 55.4 13 0.00029 31.9 3.1 42 117-158 91-132 (182)
9 PF13387 DUF4105: Domain of un 48.2 25 0.00054 29.1 3.7 55 107-161 96-154 (176)
10 PF12419 DUF3670: SNF2 Helicas 44.9 53 0.0012 26.4 5.1 53 64-130 69-123 (141)
11 PF08405 Calici_PP_N: Viral po 39.0 1.1E+02 0.0023 29.1 6.6 46 129-187 78-125 (358)
12 KOG2979|consensus 32.5 23 0.0005 32.3 1.2 76 118-204 167-251 (262)
13 KOG2673|consensus 29.7 31 0.00066 34.0 1.6 38 148-194 186-225 (485)
14 cd02998 PDI_a_ERp38 PDIa famil 29.6 22 0.00048 25.2 0.5 44 121-164 36-80 (105)
15 PF04046 PSP: PSP; InterPro: 28.0 69 0.0015 22.1 2.7 26 147-172 5-32 (48)
16 PF13964 Kelch_6: Kelch motif 27.2 56 0.0012 20.9 2.1 20 27-46 3-22 (50)
17 PF08672 APC2: Anaphase promot 25.4 13 0.00028 26.4 -1.3 42 98-139 15-60 (60)
18 PF07646 Kelch_2: Kelch motif; 24.7 75 0.0016 20.4 2.4 17 28-44 4-20 (49)
19 PF10138 vWA-TerF-like: vWA fo 24.2 62 0.0013 28.3 2.4 51 116-167 117-194 (200)
20 PF11931 DUF3449: Domain of un 24.0 26 0.00056 30.6 0.0 20 157-176 85-104 (196)
21 PF15643 Tox-PL-2: Papain fold 22.1 54 0.0012 25.9 1.5 45 119-170 3-47 (100)
22 PF04412 DUF521: Protein of un 21.4 92 0.002 29.9 3.1 44 115-159 269-316 (400)
23 PF10870 DUF2729: Protein of u 20.9 40 0.00087 23.7 0.5 14 133-146 33-46 (53)
No 1
>KOG0324|consensus
Probab=100.00 E-value=7.5e-51 Score=349.51 Aligned_cols=154 Identities=56% Similarity=0.954 Sum_probs=139.3
Q ss_pred CCcCEEEEEEeCCCcchhhhhcCceeeeeeEEEeCeEEeecCCcCCCCCeEeecCCCccccCCcceeEEEEEeCCcccCh
Q psy18161 2 AREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTE 81 (209)
Q Consensus 2 ~~~~V~LnVYDL~~~n~~~~~lG~Gi~HTgVeV~g~Ey~FGg~~~~~sGI~~~~P~~~~~~G~~~~fresi~lG~t~~t~ 81 (209)
++.+|+|||||+.++|.++.++|+|||||||||+|+||+||+|+++.+|||.++|+++. .++||++|.||.|++++
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~----~f~fr~sI~lG~Td~~~ 87 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCP----EFTFRKSILLGSTDLTE 87 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCC----CCceeEEEEecCCCCCH
Confidence 36789999999999999999999999999999999999999999999999999999874 48999999999999999
Q ss_pred hHHHHHHHhhccccccccccccCCcceeeeccccCCHHHHHHHHHHhccCCCCCCccccccccChhHHHHHHHhcCCCCC
Q psy18161 82 SDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIP 161 (209)
Q Consensus 82 ~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs~~l~~~L~gk~iP 161 (209)
++|+ +||++|+++|+|++||||.|||||||+++|++|+||+||
T Consensus 88 ~~v~-------------------------------------~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP 130 (214)
T KOG0324|consen 88 DDVR-------------------------------------RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIP 130 (214)
T ss_pred HHHH-------------------------------------HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCcc
Confidence 9998 999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhhccccccccCC-CCcCCchhhhccccc
Q psy18161 162 GWVNRLAYFSSCVPFLQRCLP-KEWLTPDALTQSINY 197 (209)
Q Consensus 162 ~~Inrla~~~~~~p~~~~~~P-~~~~~~~~~~~~~~~ 197 (209)
+||||||++++++++ ++++| +.++++-...++...
T Consensus 131 ~winrLa~~~~~~~~-~~~~p~~~~~t~~~~~~~~~~ 166 (214)
T KOG0324|consen 131 SWVNRLARAGLCSLC-NCLLPMLQNLTPVVLASSVVE 166 (214)
T ss_pred HHHHHHHHHhhhhHH-hhcchhhhcCCcccccccccc
Confidence 999999999999777 34444 446776665555444
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=1.1e-47 Score=313.66 Aligned_cols=142 Identities=47% Similarity=0.884 Sum_probs=108.1
Q ss_pred cCEEEEEEeCCCcch------hhhhcCc---eeeeeeEEEeCeEEeecCCcCCCCCeEeecCCCccccCCcceeEEEEEe
Q psy18161 4 EPILLNVYDMLWTND------YTSTLGL---GVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQI 74 (209)
Q Consensus 4 ~~V~LnVYDL~~~n~------~~~~lG~---Gi~HTgVeV~g~Ey~FGg~~~~~sGI~~~~P~~~~~~G~~~~fresi~l 74 (209)
.+|+||||||++.|+ ....+|. |||||||||+|+||+||+++.+.+||++++|+.. . +.++|+++|.|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~-~--~~~~~~~~i~l 77 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHT-S--PGGTPRESIEL 77 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-S-T--T--S-SEEEEE
T ss_pred CeEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCC-C--CCcceEEEEeC
Confidence 379999999997665 4567998 9999999999999999999988899999999972 2 34578999999
Q ss_pred CCcccChhHHHHHHHhhccccccccccccCCcceeeeccccCCHHHHHHHHHHhccCCCCCCccccccccChhHHHHHHH
Q psy18161 75 GSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKI 154 (209)
Q Consensus 75 G~t~~t~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs~~l~~~ 154 (209)
|.|.++.++|+ ++|++|+++|++++||||+|||||||++||++
T Consensus 78 G~T~~~~~~~~-------------------------------------~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~ 120 (151)
T PF05903_consen 78 GETTLSEEEFE-------------------------------------EILRSLSREFTGDSYHLLNRNCNHFSDALCQF 120 (151)
T ss_dssp EEE---HHHHH-------------------------------------HHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHH
T ss_pred CCccCCHHHHH-------------------------------------HHHHHHHhhccCCcchhhhhhhhHHHHHHHHH
Confidence 99999998888 99999999999999999999999999999999
Q ss_pred hcCCCCChHHHhhhhhhhccccccccCCCCc
Q psy18161 155 LCGQEIPGWVNRLAYFSSCVPFLQRCLPKEW 185 (209)
Q Consensus 155 L~gk~iP~~Inrla~~~~~~p~~~~~~P~~~ 185 (209)
|+|++||+||||+|+.++++|++++++|+.|
T Consensus 121 L~g~~iP~~i~~~a~~~~~~p~~~~l~p~~~ 151 (151)
T PF05903_consen 121 LTGKPIPSWINRLARIALSSPFGQMLLPMLW 151 (151)
T ss_dssp HHS----HHHHTHHHHHHTSHHHHHHCC---
T ss_pred hCCCCCCHHHHhhhHHhcccchhhhhCcCCC
Confidence 9999999999999999999999999999987
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=91.81 E-value=0.058 Score=42.16 Aligned_cols=31 Identities=42% Similarity=0.752 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccCCCCCCccccccccChhHHHH
Q psy18161 118 ESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNEL 151 (209)
Q Consensus 118 ~~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs~~l 151 (209)
++-+++....|.+++ .|||+.+||=||+...
T Consensus 89 ~~iv~rA~~~lg~~~---~Y~l~~nNCEhFa~~c 119 (125)
T PF04970_consen 89 EEIVERAESRLGKEF---EYNLLFNNCEHFATWC 119 (125)
T ss_dssp HHHHHHHHHTTT-EE---SS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---ccCCCcCCHHHHHHHH
Confidence 334444444444444 8999999999998653
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=81.91 E-value=1.4 Score=36.37 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHhccCCCCCCccccccccChhHHHHHHHhc
Q psy18161 116 FTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILC 156 (209)
Q Consensus 116 ~~~~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs~~l~~~L~ 156 (209)
.+.++.++.|++-.++|....|||+..||.+|-....+.|.
T Consensus 74 ~~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 74 GGAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred ccHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 36677888888888999999999999999999988777764
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=64.79 E-value=8.4 Score=32.55 Aligned_cols=42 Identities=24% Similarity=0.490 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHhccCCCCC-----------------------CccccccccChhHHHHHHHhcC
Q psy18161 115 DFTESDVKRIVTELGKEYRGD-----------------------RYHLMNKNCNHFSNELTKILCG 157 (209)
Q Consensus 115 ~~~~~~v~~il~~l~~~~~g~-----------------------~Y~LL~~NCNHFs~~l~~~L~g 157 (209)
.+++.+++++++.++..|.-+ +|+|+ ++||+-+++..++..-
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG~ 161 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAGL 161 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcCC
Confidence 377788888888776655543 56654 7999999988887643
No 6
>KOG0324|consensus
Probab=60.59 E-value=3.5 Score=36.50 Aligned_cols=19 Identities=53% Similarity=0.973 Sum_probs=16.2
Q ss_pred HhhccccccccccccCCcc
Q psy18161 89 TELGKEYRGDRYHLMNKGE 107 (209)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~ 107 (209)
++||++|+|+.||||.+..
T Consensus 95 e~L~~ey~G~~YhL~~kNC 113 (214)
T KOG0324|consen 95 EELSEEYRGNSYHLLTKNC 113 (214)
T ss_pred HHHHhhcCCceehhhhhcc
Confidence 4789999999999998744
No 7
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=55.91 E-value=15 Score=22.93 Aligned_cols=18 Identities=6% Similarity=0.390 Sum_probs=13.9
Q ss_pred cCCHHHHHHHHHHhccCC
Q psy18161 115 DFTESDVKRIVTELGKEY 132 (209)
Q Consensus 115 ~~~~~~v~~il~~l~~~~ 132 (209)
.-+.++|+++|+++.+++
T Consensus 17 GY~~~eVD~fLd~v~~~~ 34 (34)
T TIGR03544 17 GYDAAEVDAFLDRVADDL 34 (34)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 356889999999887653
No 8
>KOG3150|consensus
Probab=55.44 E-value=13 Score=31.90 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhccCCCCCCccccccccChhHHHHHHHhcCC
Q psy18161 117 TESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQ 158 (209)
Q Consensus 117 ~~~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs~~l~~~L~gk 158 (209)
++...++.+++-+++|.-.+|||+.-||..|-.-...+|.=+
T Consensus 91 g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~ 132 (182)
T KOG3150|consen 91 GARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYG 132 (182)
T ss_pred CCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcC
Confidence 566788999999999999999999999998876666666433
No 9
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=48.19 E-value=25 Score=29.12 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=42.1
Q ss_pred ceeeeccccCCHHHHHHHHHHhcc----CCCCCCccccccccChhHHHHHHHhcCCCCC
Q psy18161 107 ESIQIGSTDFTESDVKRIVTELGK----EYRGDRYHLMNKNCNHFSNELTKILCGQEIP 161 (209)
Q Consensus 107 ~~~~~g~t~~~~~~v~~il~~l~~----~~~g~~Y~LL~~NCNHFs~~l~~~L~gk~iP 161 (209)
+.++.=..+++.++.++++..+.+ .-+.-.||.+..||=.-.-++.....++.+|
T Consensus 96 R~v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~ 154 (176)
T PF13387_consen 96 RDVWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLP 154 (176)
T ss_pred CcEEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCee
Confidence 445555678999999999997753 2255699999999998888888877765444
No 10
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=44.90 E-value=53 Score=26.44 Aligned_cols=53 Identities=15% Similarity=0.387 Sum_probs=40.5
Q ss_pred CcceeEEEEEeCCcccChhHHHHHHHhhccccccccccccCCcceeeec--cccCCHHHHHHHHHHhcc
Q psy18161 64 EQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIG--STDFTESDVKRIVTELGK 130 (209)
Q Consensus 64 ~~~~fresi~lG~t~~t~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g--~t~~~~~~v~~il~~l~~ 130 (209)
....|+=++.+|+..+|++||++++++ ++..+.+. -...++.+++++++.+++
T Consensus 69 ~l~~f~W~lalGd~~Ls~eEf~~L~~~--------------~~~LV~~rg~WV~ld~~~l~~~~~~~~~ 123 (141)
T PF12419_consen 69 QLLDFDWELALGDEELSEEEFEQLVEQ--------------KRPLVRFRGRWVELDPEELRRALAFLEK 123 (141)
T ss_pred HHhcceEEEEECCEECCHHHHHHHHHc--------------CCCeEEECCEEEEECHHHHHHHHHHHHh
Confidence 456889999999999999999988754 23334443 345889999999998875
No 11
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=38.98 E-value=1.1e+02 Score=29.08 Aligned_cols=46 Identities=28% Similarity=0.736 Sum_probs=29.1
Q ss_pred ccCCCCCCccccccccChhHHHHHHHhcCCCCCh-HHHhhhhhhhccccccccCC-CCcCC
Q psy18161 129 GKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPG-WVNRLAYFSSCVPFLQRCLP-KEWLT 187 (209)
Q Consensus 129 ~~~~~g~~Y~LL~~NCNHFs~~l~~~L~gk~iP~-~Inrla~~~~~~p~~~~~~P-~~~~~ 187 (209)
.+.| -|..+..||=||| |+-| .+++ |++| ..+..+.||. .| |.|-.
T Consensus 78 ge~~---PY~a~~nNCy~fc---c~vl---~L~D~wl~r-r~v~r~~~F~---~P~QdWn~ 125 (358)
T PF08405_consen 78 GEKF---PYAAFTNNCYTFC---CWVL---GLNDSWLKR-RLVSRTGPFY---HPYQDWNR 125 (358)
T ss_pred CCCC---CchhhccchHHHh---Hhhc---CCChHHHhh-ccccccCCCC---CCCCcccc
Confidence 4677 6999999999999 7755 3444 4444 3333356664 45 33643
No 12
>KOG2979|consensus
Probab=32.52 E-value=23 Score=32.29 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhccCCCCCCcc--ccccccChhHH--HHHHHhcCCCCChHHHhhhhhhhccccccc-----cCCCCcCCc
Q psy18161 118 ESDVKRIVTELGKEYRGDRYH--LMNKNCNHFSN--ELTKILCGQEIPGWVNRLAYFSSCVPFLQR-----CLPKEWLTP 188 (209)
Q Consensus 118 ~~~v~~il~~l~~~~~g~~Y~--LL~~NCNHFs~--~l~~~L~gk~iP~~Inrla~~~~~~p~~~~-----~~P~~~~~~ 188 (209)
+..+..-+-++++-|+--.|- +++++||||=+ ..-++|++ ..+.-.|..++ ..|...+++
T Consensus 167 e~~i~~e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~-----------~~~i~CPv~gC~~~~~~~~~~l~~d 235 (262)
T KOG2979|consen 167 EELIGQEVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCD-----------EITIRCPVLGCENPYYIQPGHLDED 235 (262)
T ss_pred HHHhhhhhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhcc-----------CceeecccccCCccccccccccCch
Confidence 334444455566666643332 78999999974 34445544 12223333322 245566677
Q ss_pred hhhhccccccCCCCCC
Q psy18161 189 DALTQSINYSMSSDTS 204 (209)
Q Consensus 189 ~~~~~~~~~~~~~~~~ 204 (209)
..+++-|.++|++.-+
T Consensus 236 ~el~~kIr~~qe~~~~ 251 (262)
T KOG2979|consen 236 KELQQKIRQSQEPAIP 251 (262)
T ss_pred HHHHHHHHHhcccccc
Confidence 6889999999998654
No 13
>KOG2673|consensus
Probab=29.72 E-value=31 Score=33.97 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=28.5
Q ss_pred HHHHHHH--hcCCCCChHHHhhhhhhhccccccccCCCCcCCchhhhcc
Q psy18161 148 SNELTKI--LCGQEIPGWVNRLAYFSSCVPFLQRCLPKEWLTPDALTQS 194 (209)
Q Consensus 148 s~~l~~~--L~gk~iP~~Inrla~~~~~~p~~~~~~P~~~~~~~~~~~~ 194 (209)
+..+-.+ |.+..||.|++|+-.+| -|.+||.+..|+.+
T Consensus 186 S~~~R~al~l~~~d~P~~~yRMR~lG---------YPPg~L~~s~~e~s 225 (485)
T KOG2673|consen 186 SGNTRSALGLSPGDPPEWKYRMRRLG---------YPPGYLRKSDMEVS 225 (485)
T ss_pred chhHHHhhcCCCCCchHHHHHHhhcc---------CCchhhhhhhcccc
Confidence 3444444 45678999999999888 39999999888543
No 14
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=29.55 E-value=22 Score=25.19 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHhccCCCC-CCccccccccChhHHHHHHHhcCCCCChHH
Q psy18161 121 VKRIVTELGKEYRG-DRYHLMNKNCNHFSNELTKILCGQEIPGWV 164 (209)
Q Consensus 121 v~~il~~l~~~~~g-~~Y~LL~~NCNHFs~~l~~~L~gk~iP~~I 164 (209)
+...+.++.+++.. ..+.++.=||+....++|+.+....+|..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 36 LAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred hChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 44666666666653 468888999999778889999888888765
No 15
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=27.99 E-value=69 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=20.3
Q ss_pred hHHHHHHHhc--CCCCChHHHhhhhhhh
Q psy18161 147 FSNELTKILC--GQEIPGWVNRLAYFSS 172 (209)
Q Consensus 147 Fs~~l~~~L~--gk~iP~~Inrla~~~~ 172 (209)
.|++|-++|. ...+|.||.|+..+|.
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G~ 32 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLGY 32 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcCC
Confidence 4678888875 3569999999998764
No 16
>PF13964 Kelch_6: Kelch motif
Probab=27.19 E-value=56 Score=20.91 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.6
Q ss_pred eeeeeEEEeCeEEeecCCcC
Q psy18161 27 VFHSGIEVYGVEYAYGGHQY 46 (209)
Q Consensus 27 i~HTgVeV~g~Ey~FGg~~~ 46 (209)
..|+.+.+.|+=|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36888999999999998643
No 17
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=25.37 E-value=13 Score=26.38 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=23.5
Q ss_pred ccccccCCcceeeeccccCCHHHHHHHHHHhcc----CCCCCCccc
Q psy18161 98 DRYHLMNKGESIQIGSTDFTESDVKRIVTELGK----EYRGDRYHL 139 (209)
Q Consensus 98 ~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~~----~~~g~~Y~L 139 (209)
||.|.|-......-+..+.|.++++++|+++-+ ++.+..|-|
T Consensus 15 ~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~lv~e~~L~~~~G~YkL 60 (60)
T PF08672_consen 15 DRIHSMLKMFPKDPGGYDISLEELQEFLDRLVEEGKLECSGGSYKL 60 (60)
T ss_dssp HHHHHHHHHH-GGG--TT--HHHHHHHHHHHHHTTSEE--TTEEEE
T ss_pred HHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHCCcEEecCCEEeC
Confidence 344555555533336778999999999998852 567777754
No 18
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=24.73 E-value=75 Score=20.39 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=15.3
Q ss_pred eeeeEEEeCeEEeecCC
Q psy18161 28 FHSGIEVYGVEYAYGGH 44 (209)
Q Consensus 28 ~HTgVeV~g~Ey~FGg~ 44 (209)
-|+.+++.++=|-|||.
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 48999999999999986
No 19
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=24.20 E-value=62 Score=28.32 Aligned_cols=51 Identities=18% Similarity=0.453 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhcc-----C---CCCCCccccc----------cccChhH---------HHHHHHhcCCCCChHHHhh
Q psy18161 116 FTESDVKRIVTELGK-----E---YRGDRYHLMN----------KNCNHFS---------NELTKILCGQEIPGWVNRL 167 (209)
Q Consensus 116 ~~~~~v~~il~~l~~-----~---~~g~~Y~LL~----------~NCNHFs---------~~l~~~L~gk~iP~~Inrl 167 (209)
-++.++.++|.+-+. + +-.+.|..|+ -||+.|+ ++|-..|+ ..+|.|+..+
T Consensus 117 ~~~~~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL-~Efp~Wl~~a 194 (200)
T PF10138_consen 117 DDRRAIEKLIREASDEPIFWQFVGIGDSNFGFLEKLDDLAGRVVDNAGFFAIDDIDELSDEELYDRLL-AEFPDWLKAA 194 (200)
T ss_pred cchHHHHHHHHhccCCCeeEEEEEecCCcchHHHHhhccCCcccCCcCeEecCCcccCCHHHHHHHHH-HHHHHHHHHH
Confidence 355666666665542 1 2335566554 3999997 56888888 8999999643
No 20
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=24.01 E-value=26 Score=30.62 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=0.0
Q ss_pred CCCCChHHHhhhhhhhcccc
Q psy18161 157 GQEIPGWVNRLAYFSSCVPF 176 (209)
Q Consensus 157 gk~iP~~Inrla~~~~~~p~ 176 (209)
||+||-|+-.|.-+...++|
T Consensus 85 GkPIPyWLYKLhGL~~ey~C 104 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKC 104 (196)
T ss_dssp --------------------
T ss_pred CCcccHHHHHHhCCCCeeee
Confidence 69999999999988887766
No 21
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=22.15 E-value=54 Score=25.92 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=35.7
Q ss_pred HHHHHHHHHhccCCCCCCccccccccChhHHHHHHHhcCCCCChHHHhhhhh
Q psy18161 119 SDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYF 170 (209)
Q Consensus 119 ~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs~~l~~~L~gk~iP~~Inrla~~ 170 (209)
+++...|..+..+|. ---|--|++++.++|.-+.||+-+.++-.-
T Consensus 3 ~~~~Q~I~~I~~~f~-------~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 3 AEVRQQIGKIASRFK-------IFQCVECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred HHHHHHHHHhhcccC-------ceehHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 455677777777763 346999999999999999999998877543
No 22
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=21.41 E-value=92 Score=29.88 Aligned_cols=44 Identities=25% Similarity=0.552 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHhccCCCCCCccccccccChhH----HHHHHHhcCCC
Q psy18161 115 DFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFS----NELTKILCGQE 159 (209)
Q Consensus 115 ~~~~~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs----~~l~~~L~gk~ 159 (209)
.++.+++++..+++. .-..+.-|++.=-|+||| .++++.|-|++
T Consensus 269 ~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 269 TITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRK 316 (400)
T ss_pred EeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 377888888888886 667788999999999999 55677777765
No 23
>PF10870 DUF2729: Protein of unknown function (DUF2729); InterPro: IPR022621 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf72; it is a family of uncharacterised viral proteins. This Alphabaculovirus family of proteins has no known function.
Probab=20.95 E-value=40 Score=23.68 Aligned_cols=14 Identities=57% Similarity=1.073 Sum_probs=12.6
Q ss_pred CCCCccccccccCh
Q psy18161 133 RGDRYHLMNKNCNH 146 (209)
Q Consensus 133 ~g~~Y~LL~~NCNH 146 (209)
.|++|--+++|||-
T Consensus 33 ~gdrY~q~NNNCNF 46 (53)
T PF10870_consen 33 GGDRYYQINNNCNF 46 (53)
T ss_pred CCceEEEEcCCccE
Confidence 69999999999993
Done!