Query psy18161
Match_columns 209
No_of_seqs 112 out of 451
Neff 4.6
Searched_HMMs 29240
Date Sat Aug 17 00:09:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 1.2E-49 4.1E-54 331.4 9.3 134 4-183 7-147 (168)
2 2lkt_A Retinoic acid receptor 93.1 0.022 7.6E-07 43.5 0.7 30 119-151 91-120 (125)
3 4dot_A Group XVI phospholipase 92.8 0.039 1.3E-06 44.3 1.7 32 121-152 89-121 (140)
4 4dpz_X HRAS-like suppressor 2; 92.5 0.031 1.1E-06 44.6 0.8 18 135-152 104-121 (137)
5 1rpq_W Peptide E131; receptor- 36.7 9.5 0.00032 22.1 0.5 14 143-156 2-15 (26)
6 1whz_A Hypothetical protein; a 29.6 1E+02 0.0035 20.5 5.0 51 79-129 5-61 (70)
7 1xs0_A Inhibitor of vertebrate 19.8 54 0.0018 26.0 2.2 27 147-176 15-41 (136)
8 3i5g_C Myosin catalytic light 19.8 1.2E+02 0.0042 22.6 4.3 14 149-162 143-156 (159)
9 3gxh_A Putative phosphatase (D 18.7 85 0.0029 23.8 3.2 32 109-143 73-104 (157)
10 2wuj_A Septum site-determining 17.6 24 0.00081 23.6 -0.3 18 115-132 19-36 (57)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=1.2e-49 Score=331.44 Aligned_cols=134 Identities=34% Similarity=0.591 Sum_probs=122.2
Q ss_pred cCEEEEEEeCCC-cchhhh--hcCc---eeeeeeEEEeCeEEeecCCcCCCCCeEeecCCCccccCCcceeEEEEEeCCc
Q psy18161 4 EPILLNVYDMLW-TNDYTS--TLGL---GVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST 77 (209)
Q Consensus 4 ~~V~LnVYDL~~-~n~~~~--~lG~---Gi~HTgVeV~g~Ey~FGg~~~~~sGI~~~~P~~~~~~G~~~~fresi~lG~t 77 (209)
.+|+||||||++ +|+.++ ++|+ |||||||||||+||+||+ +||++++|+.. ++| .||++|.||.|
T Consensus 7 ~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~-~~g---~~resi~lG~T 77 (168)
T 2wp7_A 7 YPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGT-LLG---PPDSVVDVGNT 77 (168)
T ss_dssp EEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCS-TTC---SCSEEEEEEEE
T ss_pred cEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcC-CCC---CeEEEEECCCc
Confidence 459999999998 567664 6897 999999999999999996 59999999864 444 56999999999
Q ss_pred ccChhHHHHHHHhhccccccccccccCCcceeeeccccCCHHHHHHHHHHhccC-CCCCCccccccccChhHHHHHHHhc
Q psy18161 78 DFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKE-YRGDRYHLMNKNCNHFSNELTKILC 156 (209)
Q Consensus 78 ~~t~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~~~-~~g~~Y~LL~~NCNHFs~~l~~~L~ 156 (209)
++++++|+ ++|++|+++ |++++||||+||||||||++|++|+
T Consensus 78 ~~~~~~~~-------------------------------------~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~ 120 (168)
T 2wp7_A 78 EVTEEIFL-------------------------------------EYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLT 120 (168)
T ss_dssp CCCHHHHH-------------------------------------HHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHH
T ss_pred cCCHHHHH-------------------------------------HHHHHhhhccCCcccCchhhhccchhHHHHHHHhc
Confidence 99998888 999999998 9999999999999999999999999
Q ss_pred CCCCChHHHhhhhhhhccccccccCCC
Q psy18161 157 GQEIPGWVNRLAYFSSCVPFLQRCLPK 183 (209)
Q Consensus 157 gk~iP~~Inrla~~~~~~p~~~~~~P~ 183 (209)
||+||+||||+|+.++++|++|++.|.
T Consensus 121 gk~IP~wInrl~~~vl~tp~G~~l~~~ 147 (168)
T 2wp7_A 121 GRKIPSYITDLPSEVLSTPFGQALRPF 147 (168)
T ss_dssp SCCCCHHHHTHHHHHHTSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999999999998774
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=93.10 E-value=0.022 Score=43.54 Aligned_cols=30 Identities=23% Similarity=0.636 Sum_probs=20.6
Q ss_pred HHHHHHHHHhccCCCCCCccccccccChhHHHH
Q psy18161 119 SDVKRIVTELGKEYRGDRYHLMNKNCNHFSNEL 151 (209)
Q Consensus 119 ~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs~~l 151 (209)
+-+++....+.+++ .|||+.+||=||+..+
T Consensus 91 ~iv~rA~~~lg~~~---~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 91 VIISSAKEMVGQKM---KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp HHHHHHHHHTTCEE---CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC---CcCCCccCHHHHHhhh
Confidence 33445544555444 6999999999998653
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=92.80 E-value=0.039 Score=44.27 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=21.2
Q ss_pred HHHHHHHhccCCC-CCCccccccccChhHHHHH
Q psy18161 121 VKRIVTELGKEYR-GDRYHLMNKNCNHFSNELT 152 (209)
Q Consensus 121 v~~il~~l~~~~~-g~~Y~LL~~NCNHFs~~l~ 152 (209)
.++++++.+..-. -..|+||.+||-||+..+.
T Consensus 89 ~~~iv~rA~~~lG~e~~Y~ll~nNCEHFvt~cr 121 (140)
T 4dot_A 89 CSKIIQRAEELVGQEVLYKLTSENCEHFVNELR 121 (140)
T ss_dssp HHHHHHHHHHTTTCBCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccccChHHHHHHHh
Confidence 3444544432222 2699999999999997754
No 4
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=92.53 E-value=0.031 Score=44.64 Aligned_cols=18 Identities=44% Similarity=0.809 Sum_probs=10.8
Q ss_pred CCccccccccChhHHHHH
Q psy18161 135 DRYHLMNKNCNHFSNELT 152 (209)
Q Consensus 135 ~~Y~LL~~NCNHFs~~l~ 152 (209)
..|+|+.+||-||+..+.
T Consensus 104 ~~Y~ll~nNCEHFvt~cr 121 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHLR 121 (137)
T ss_dssp EC-----CHHHHHHHHHH
T ss_pred cccCcCccChHHHHHHHh
Confidence 489999999999998764
No 5
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=36.73 E-value=9.5 Score=22.05 Aligned_cols=14 Identities=50% Similarity=0.982 Sum_probs=10.3
Q ss_pred ccChhHHHHHHHhc
Q psy18161 143 NCNHFSNELTKILC 156 (209)
Q Consensus 143 NCNHFs~~l~~~L~ 156 (209)
.|+||+-++--.|+
T Consensus 2 qcphfcyeldyelc 15 (26)
T 1rpq_W 2 QCPHFCYELDYELC 15 (26)
T ss_dssp CCCTHHHHSSSCCS
T ss_pred CCCeeeeecCcccC
Confidence 59999988755443
No 6
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=29.59 E-value=1e+02 Score=20.51 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=37.8
Q ss_pred cChhHHHHHHHhhcccc---ccccccccCCc-c--eeeeccccCCHHHHHHHHHHhc
Q psy18161 79 FTESDVKRIVTELGKEY---RGDRYHLMNKG-E--SIQIGSTDFTESDVKRIVTELG 129 (209)
Q Consensus 79 ~t~~ev~~~~~~l~~~~---~~~~~~~~~~~-~--~~~~g~t~~~~~~v~~il~~l~ 129 (209)
++..|+.++++++|-++ +||+..+.++. . +++.-.-++....++.|+.++.
T Consensus 5 ~~~~elik~L~~~G~~~~r~~GSH~~~~~~~~~~~~vP~h~~ei~~g~lk~Ilkqag 61 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVERMAKGGHRLYTHPDGRIVVVPFHSGELPKGTFKRILRDAG 61 (70)
T ss_dssp CCHHHHHHHHHHTTCEEEEEETTEEEEECTTSCEEEEECSSSSCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCEEeCCCCCCceEecCCCCeeEecCCcCcCCHHHHHHHHHHcC
Confidence 45678999999999765 58998887542 2 2443333899999999999774
No 7
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=19.80 E-value=54 Score=26.01 Aligned_cols=27 Identities=19% Similarity=0.541 Sum_probs=20.2
Q ss_pred hHHHHHHHhcCCCCChHHHhhhhhhhcccc
Q psy18161 147 FSNELTKILCGQEIPGWVNRLAYFSSCVPF 176 (209)
Q Consensus 147 Fs~~l~~~L~gk~iP~~Inrla~~~~~~p~ 176 (209)
|..++-+.+.+.++|+||.++ |.+.|+
T Consensus 15 yr~aw~~mvk~~~LP~Wv~~~---GtssP~ 41 (136)
T 1xs0_A 15 TKAAFNQMVQGHKLPAWVMKG---GTYTPA 41 (136)
T ss_dssp THHHHHHHHTTSCCCHHHHHT---CEEEEE
T ss_pred HHHHHHHHHhcCCCcHHHHcC---CCCCCC
Confidence 445666677788999999997 666664
No 8
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=19.79 E-value=1.2e+02 Score=22.57 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=10.5
Q ss_pred HHHHHHhcCCCCCh
Q psy18161 149 NELTKILCGQEIPG 162 (209)
Q Consensus 149 ~~l~~~L~gk~iP~ 162 (209)
++|++.++..++|.
T Consensus 143 ~EF~~~m~~~p~pd 156 (159)
T 3i5g_C 143 EDLMKKVMAGPFPD 156 (159)
T ss_dssp HHHHHHHHHCSCCC
T ss_pred HHHHHHHHCCCCCC
Confidence 57788887777775
No 9
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=18.75 E-value=85 Score=23.80 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=24.8
Q ss_pred eeeccccCCHHHHHHHHHHhccCCCCCCccccccc
Q psy18161 109 IQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKN 143 (209)
Q Consensus 109 ~~~g~t~~~~~~v~~il~~l~~~~~g~~Y~LL~~N 143 (209)
++++.++.+.++++++++.+.+.|.+ |+|-||
T Consensus 73 i~~Dv~~~~~~~v~~~~~~i~~~~G~---dVLVnn 104 (157)
T 3gxh_A 73 IPVDWQNPKVEDVEAFFAAMDQHKGK---DVLVHC 104 (157)
T ss_dssp CCCCTTSCCHHHHHHHHHHHHHTTTS---CEEEEC
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCC---CEEEEC
Confidence 55667777889999999999888743 777655
No 10
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=17.60 E-value=24 Score=23.61 Aligned_cols=18 Identities=22% Similarity=0.671 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHhccCC
Q psy18161 115 DFTESDVKRIVTELGKEY 132 (209)
Q Consensus 115 ~~~~~~v~~il~~l~~~~ 132 (209)
.-+..+|+++|+.+..+|
T Consensus 19 GY~~~EVD~FLd~v~~~~ 36 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDY 36 (57)
T ss_dssp EEEHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 355778888888876543
Done!