Query psy18161
Match_columns 209
No_of_seqs 112 out of 451
Neff 4.6
Searched_HMMs 13730
Date Sat Aug 17 00:09:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18161.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/18161hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlpa1 d.41.2.2 (A:1-149) Nic 34.8 3.4 0.00025 31.0 -0.3 39 121-159 53-92 (149)
2 d1whza_ d.50.3.2 (A:) Hypothet 31.0 43 0.0032 21.3 5.0 50 80-129 6-61 (70)
3 d2adca2 d.58.7.1 (A:444-531) P 14.2 70 0.0051 20.0 3.2 28 102-129 6-35 (88)
4 d1wrka1 a.39.1.5 (A:4-85) Trop 13.7 1.1E+02 0.0083 19.1 4.2 32 79-131 33-64 (82)
5 d1o57a2 c.61.1.1 (A:75-276) Pu 11.7 98 0.0071 23.2 3.9 74 81-156 3-79 (202)
6 d1yira2 d.41.2.2 (A:4-144) Nic 11.1 21 0.0015 26.1 -0.4 38 122-160 56-94 (141)
7 d1f1ea_ a.22.1.2 (A:) Archaeal 10.7 33 0.0024 25.0 0.6 68 75-154 51-119 (151)
8 d2fhfa1 b.1.18.2 (A:288-402) P 9.5 52 0.0038 22.3 1.3 39 4-42 29-73 (115)
9 d2ih2a2 d.287.1.1 (A:244-413) 9.1 40 0.0029 25.7 0.5 37 96-139 110-152 (170)
10 d1x9ba_ a.10.2.1 (A:) Hypothet 8.9 47 0.0034 20.6 0.8 15 82-96 26-40 (53)
No 1
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.84 E-value=3.4 Score=31.05 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=33.3
Q ss_pred HHHHHHHhcc-CCCCCCccccccccChhHHHHHHHhcCCC
Q psy18161 121 VKRIVTELGK-EYRGDRYHLMNKNCNHFSNELTKILCGQE 159 (209)
Q Consensus 121 v~~il~~l~~-~~~g~~Y~LL~~NCNHFs~~l~~~L~gk~ 159 (209)
+++.|+-|+. +|+.+..+-|..+|++|.+++..+|-+-+
T Consensus 53 l~~~i~~l~~lrFt~eel~yL~~~~~~~~~~fl~~L~~~r 92 (149)
T d1vlpa1 53 LKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSN 92 (149)
T ss_dssp HHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHcCCCCCHHHHHHHHhCC
Confidence 4477888875 89999999999999999999999997643
No 2
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=31.04 E-value=43 Score=21.35 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=38.0
Q ss_pred ChhHHHHHHHhhcccc---ccccccccCCcc---eeeeccccCCHHHHHHHHHHhc
Q psy18161 80 TESDVKRIVTELGKEY---RGDRYHLMNKGE---SIQIGSTDFTESDVKRIVTELG 129 (209)
Q Consensus 80 t~~ev~~~~~~l~~~~---~~~~~~~~~~~~---~~~~g~t~~~~~~v~~il~~l~ 129 (209)
...|+.++.+++|=.+ +||+..+.++.. +++...-++.+..++.|+.+..
T Consensus 6 k~kelik~L~~~Gf~~~rqkGSH~~~~~~~~~~~~v~~~~kei~~gtl~~Ilkqag 61 (70)
T d1whza_ 6 RPEEVARKLRRLGFVERMAKGGHRLYTHPDGRIVVVPFHSGELPKGTFKRILRDAG 61 (70)
T ss_dssp CHHHHHHHHHHTTCEEEEEETTEEEEECTTSCEEEEECSSSSCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCcEEeccCCceeEEEcCCCCEEEcCCCCCccCHHHHHHHHHHhC
Confidence 4468888999999666 788888876532 3556656899999999998664
No 3
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.21 E-value=70 Score=20.01 Aligned_cols=28 Identities=14% Similarity=0.410 Sum_probs=22.3
Q ss_pred ccCCcceeeec--cccCCHHHHHHHHHHhc
Q psy18161 102 LMNKGESIQIG--STDFTESDVKRIVTELG 129 (209)
Q Consensus 102 ~~~~~~~~~~g--~t~~~~~~v~~il~~l~ 129 (209)
+.||..++++| ..+.++++++++.....
T Consensus 6 ~~pPs~tL~V~NLp~~~te~~l~~~F~~~G 35 (88)
T d2adca2 6 IFPPSATLHLSNIPPSVSEEDLKVLFSSNG 35 (88)
T ss_dssp CCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHhhccC
Confidence 45777888888 66699999999988764
No 4
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=13.69 E-value=1.1e+02 Score=19.14 Aligned_cols=32 Identities=13% Similarity=0.458 Sum_probs=22.2
Q ss_pred cChhHHHHHHHhhccccccccccccCCcceeeeccccCCHHHHHHHHHHhccC
Q psy18161 79 FTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKE 131 (209)
Q Consensus 79 ~t~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~~~ 131 (209)
++..|+.++.++||.. .+++++++++.++-.+
T Consensus 33 I~~~el~~~l~~lg~~---------------------~t~~el~~~i~~~D~d 64 (82)
T d1wrka1 33 ISTKELGKVMRMLGQN---------------------PTPEELQEMIDEVDED 64 (82)
T ss_dssp BCHHHHHHHHHHTTCC---------------------CCHHHHHHHHHTTCTT
T ss_pred EeHHHHHHHHHHcCCC---------------------CCHHHHHHHHHHhCCC
Confidence 5667777777777663 3677888888876543
No 5
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.75 E-value=98 Score=23.20 Aligned_cols=74 Identities=8% Similarity=0.088 Sum_probs=49.3
Q ss_pred hhHHHHHHHhhccccccccccccCCcceeeeccccCCHHHHHHHHHHhccCCCCCCcccc---ccccChhHHHHHHHhc
Q psy18161 81 ESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLM---NKNCNHFSNELTKILC 156 (209)
Q Consensus 81 ~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~~~~~g~~Y~LL---~~NCNHFs~~l~~~L~ 156 (209)
+.|.+.+.|+|++.++-.... .+.-.+.+-..-.+++.++.+.+.+.+.|.....|.+ ..----++.+++..|.
T Consensus 3 ~~~~~~~~~~l~~~l~~~~~~--lpg~yid~~~ll~~P~~l~~i~~~la~~~~~~~iD~Vvgi~~~Gi~lA~~lA~~L~ 79 (202)
T d1o57a2 3 QAEAEEFVQTLGQSLANPERI--LPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLN 79 (202)
T ss_dssp HHHHHHHHHHHHHHHTCGGGE--ETTTEECCTTTTTCHHHHHHHHHHHHHHTTTSCCSEEEEETTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCcc--CCCCeEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEeccCcchhhHHHHHHhh
Confidence 457778889998877532222 2233455556667888999999999998888777754 2233356666776663
No 6
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.05 E-value=21 Score=26.13 Aligned_cols=38 Identities=5% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHHhcc-CCCCCCccccccccChhHHHHHHHhcCCCC
Q psy18161 122 KRIVTELGK-EYRGDRYHLMNKNCNHFSNELTKILCGQEI 160 (209)
Q Consensus 122 ~~il~~l~~-~~~g~~Y~LL~~NCNHFs~~l~~~L~gk~i 160 (209)
++.|+.|+. +|+.+.-+.|+ +|+.|.+++..+|-+-+.
T Consensus 56 ~~~i~~l~~lrFt~eei~yL~-~~~~f~~~fldyL~~frf 94 (141)
T d1yira2 56 REQLEYLAGLAISDEQLAFLE-RIPFLAPDFIRFLGLFRF 94 (141)
T ss_dssp HHHHHHHHHCCCCHHHHHHHH-TSTTSCHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCCHHHHHHHH-cCCCCCHHHHHHHHhCCC
Confidence 366777764 88889999885 699999999999987554
No 7
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=10.66 E-value=33 Score=24.99 Aligned_cols=68 Identities=25% Similarity=0.280 Sum_probs=47.4
Q ss_pred CCcccChhHHHHHHHhhccccccccccccCCcceeeeccccCCHHHHHHHHHHhc-cCCCCCCccccccccChhHHHHHH
Q psy18161 75 GSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELG-KEYRGDRYHLMNKNCNHFSNELTK 153 (209)
Q Consensus 75 G~t~~t~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~-~~~~g~~Y~LL~~NCNHFs~~l~~ 153 (209)
|...++.++|+.++..+|.+=.-++ ...-++...|++|+..-. .+...+.+.+|+.=|..|..++++
T Consensus 51 ~rKTi~~edi~~a~~~~~~~~~~~~------------~~~~fp~a~IkRi~k~~g~~ris~dA~~~l~~~~E~fi~~l~~ 118 (151)
T d1f1ea_ 51 GKKTLMEEHLKALADVLMVEGVEDY------------DGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGE 118 (151)
T ss_dssp TCSEECHHHHHHHHHHHTCTTSTTC------------CSCCCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccccccccc------------ccCccCHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888877766653221111 123388999999999765 467788899999888888888776
Q ss_pred H
Q psy18161 154 I 154 (209)
Q Consensus 154 ~ 154 (209)
.
T Consensus 119 ~ 119 (151)
T d1f1ea_ 119 K 119 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}
Probab=9.46 E-value=52 Score=22.31 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=22.7
Q ss_pred cCEEEEEEeCCCcchhh----hhcCceeeeeeEE--EeCeEEeec
Q psy18161 4 EPILLNVYDMLWTNDYT----STLGLGVFHSGIE--VYGVEYAYG 42 (209)
Q Consensus 4 ~~V~LnVYDL~~~n~~~----~~lG~Gi~HTgVe--V~g~Ey~FG 42 (209)
..|.|.+||=....... ..-.-|+||.-|. ..|..|.|-
T Consensus 29 ~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G~~Y~y~ 73 (115)
T d2fhfa1 29 QQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAFYRYA 73 (115)
T ss_dssp SEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCEEEEE
T ss_pred CEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCCCEEEEE
Confidence 46899999864321111 1113489999886 345556553
No 9
>d2ih2a2 d.287.1.1 (A:244-413) DNA methylase TaqI, C-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=9.09 E-value=40 Score=25.72 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=20.6
Q ss_pred ccccccccCCcceeeeccccCCHHHHHHHHHH------hccCCCCCCccc
Q psy18161 96 RGDRYHLMNKGESIQIGSTDFTESDVKRIVTE------LGKEYRGDRYHL 139 (209)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~------l~~~~~g~~Y~L 139 (209)
+|| |||+++.-+ ++++++|-++|++ +++-|+.=.|||
T Consensus 110 ree-fHLlpKe~v------dl~~~eVV~~LNSe~iqryvk~lyRd~~~HL 152 (170)
T d2ih2a2 110 REE-FHLLPKEGV------RLDPSSLVQWLNSEAMQKHVRTLYRDFVPHL 152 (170)
T ss_dssp SSS-EEEEECTTE------EECHHHHHHHHTSHHHHHHHHHHHTTSSSSC
T ss_pred ccc-eeecccccC------CcCHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Confidence 777 777777632 5566665555542 123444445665
No 10
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354, soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=8.93 E-value=47 Score=20.63 Aligned_cols=15 Identities=33% Similarity=0.795 Sum_probs=12.0
Q ss_pred hHHHHHHHhhccccc
Q psy18161 82 SDVKRIVTELGKEYR 96 (209)
Q Consensus 82 ~ev~~~~~~l~~~~~ 96 (209)
+|+++++-+|||.|+
T Consensus 26 ~ELE~la~kLGk~Y~ 40 (53)
T d1x9ba_ 26 NELEALAVRLGKSYR 40 (53)
T ss_dssp HHHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHhHHHH
Confidence 578888999999763
Done!