RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18161
         (209 letters)



>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Klebsiella pneumoniae [TaxId: 573]}
          Length = 519

 Score = 32.7 bits (74), Expect = 0.026
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 15/90 (16%)

Query: 68  FRESIQIGSTDFTESDV--------KRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTES 119
           F+E I   S   TE              +      Y+ +   +     +  IG       
Sbjct: 105 FKEPIACVSDSMTEDAAVFGGNNNMNLGLQNASALYKPEIIAVSTTCMAEVIG------D 158

Query: 120 DVKRIVTELGKEY-RGDRYHLMNKNCNHFS 148
           D++  +    K+        + + +   F 
Sbjct: 159 DLQAFIANAKKDGFVDSSIAVPHAHTPSFI 188


>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Clostridium pasteurianum [TaxId: 1501]}
          Length = 457

 Score = 30.1 bits (67), Expect = 0.17
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 14/73 (19%)

Query: 68  FRESIQIGSTDFTESDV--------KRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTES 119
           F+E     ++ FTE           K  V  +   Y  D   +     S  +G       
Sbjct: 59  FKEPAMASTSSFTEGASVFGGGSNIKTAVKNIFSLYNPDIIAVHTTCLSETLG------D 112

Query: 120 DVKRIVTELGKEY 132
           D+   ++++    
Sbjct: 113 DLPTYISQMEDAG 125


>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Azotobacter vinelandii [TaxId: 354]}
          Length = 522

 Score = 25.8 bits (56), Expect = 4.1
 Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 15/90 (16%)

Query: 68  FRESIQIGSTDFTESDV--------KRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTES 119
           FRE +   S   TE           K  +      Y+ D   +     +  IG       
Sbjct: 106 FREPVSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIG------D 159

Query: 120 DVKRIVTELGKEY-RGDRYHLMNKNCNHFS 148
           D+   +    KE    D + +   +   F 
Sbjct: 160 DLNAFINNSKKEGFIPDEFPVPFAHTPSFV 189


>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
           {Escherichia coli [TaxId: 562]}
          Length = 320

 Score = 24.7 bits (53), Expect = 9.0
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 11/87 (12%)

Query: 29  HSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIV 88
             G+EV G+   Y G          +      +L ++++  + I  G T    +      
Sbjct: 30  TEGLEVMGIYDGYLG----------LYEDRMVQL-DRYSVSDMINRGGTFLGSARFPEFR 78

Query: 89  TELGKEYRGDRYHLMNKGESIQIGSTD 115
            E  +    +          + IG   
Sbjct: 79  DENIRAVAIENLKKRGIDALVVIGGDG 105


>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 279

 Score = 24.5 bits (53), Expect = 9.3
 Identities = 6/39 (15%), Positives = 11/39 (28%)

Query: 29 HSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFA 67
            GI V  +E      +   +  F         + +  A
Sbjct: 35 IPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILA 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 798,511
Number of extensions: 36628
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 10
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)