RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18163
(1028 letters)
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 579 bits (1495), Expect = 0.0
Identities = 215/297 (72%), Positives = 254/297 (85%), Gaps = 4/297 (1%)
Query: 358 CRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLK 417
CRSV+E++ LNRIEEGTYGVVYRA+DK+T EIVALK+LKMEKEKEGFPITSLREIN LLK
Sbjct: 1 CRSVDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLK 60
Query: 418 AQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
QHPNIVTV+E+VVGSN+DKI++VM+YVEHD+KSLMETM KQ F+ EVKCLM QLL+
Sbjct: 61 LQHPNIVTVKEVVVGSNLDKIYMVMEYVEHDLKSLMETM---KQPFLQSEVKCLMLQLLS 117
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
VAHLHDNWILHRDLKTSNLLL++RGILK+ DFGLAREYGSPLK YT +VVTLWYR+PEL
Sbjct: 118 GVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPEL 177
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKL 597
LLG KEYST IDMWSVGCIFAE L +PLF GKS+++QL++IFK +GTP EKIWPGFS+L
Sbjct: 178 LLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSEL 237
Query: 598 PAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
P +K TF +YP L+ K L++ G+DLL + LTYDP RI+A++AL+H YF
Sbjct: 238 PGAKKKTFTKYPY-NQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF 293
Score = 83.4 bits (207), Expect = 2e-17
Identities = 27/34 (79%), Positives = 32/34 (94%)
Query: 749 CRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
CRSV+E++ LNRIEEGTYGVVYRA+DK+T EIVA
Sbjct: 1 CRSVDEYEKLNRIEEGTYGVVYRARDKKTGEIVA 34
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 449 bits (1158), Expect = e-151
Identities = 178/313 (56%), Positives = 222/313 (70%), Gaps = 6/313 (1%)
Query: 358 CRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLK 417
CRSV EF+ LNRI EGTYG+VYRA+D + EIVALK+++M+ E++G PI+SLREI LL
Sbjct: 3 CRSVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLN 62
Query: 418 AQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
+HPNIV ++E+VVG ++D IF+VM+Y E D+ SL++ M F +VKCLM QLL
Sbjct: 63 LRHPNIVELKEVVVGKHLDSIFLVMEYCEQDLASLLDNM---PTPFSESQVKCLMLQLLR 119
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
+ +LH+N+I+HRDLK SNLLL+ +G LK+ DFGLAR YG P K TP VVTLWYR+PEL
Sbjct: 120 GLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPEL 179
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKL 597
LLGC Y+T IDMW+VGCI AE L +PL GKS++EQL I + +GTPNE IWPGFS L
Sbjct: 180 LLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDL 239
Query: 598 PAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSES 657
P V K T + P LK K L+E G LL L YDP R TA+EAL YF E
Sbjct: 240 PLVGKFTLPKQP-YNNLKHKF--PWLSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEK 296
Query: 658 PLPIDPAMFPTWP 670
PLP +P M PT+P
Sbjct: 297 PLPCEPEMMPTFP 309
Score = 66.6 bits (163), Expect = 1e-11
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 749 CRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
CRSV EF+ LNRI EGTYG+VYRA+D + EIVA
Sbjct: 3 CRSVTEFEKLNRIGEGTYGIVYRARDTTSGEIVA 36
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 428 bits (1104), Expect = e-143
Identities = 138/291 (47%), Positives = 200/291 (68%), Gaps = 9/291 (3%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
++ L ++ EGTYGVVY+A+DK+T EIVALK+++++ E+EG P T+LREI+ L + +HPNI
Sbjct: 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNI 60
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
V + +++ K+++V +Y + D+K ++ P +K +M QLL +A+ H
Sbjct: 61 VKLLDVIHTER--KLYLVFEYCDMDLKKYLDKRPGP---LSPNLIKSIMYQLLRGLAYCH 115
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
+ ILHRDLK N+L++ G+LK+ DFGLAR +G PL+ YT VVTLWYR+PE+LLG K
Sbjct: 116 SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKH 175
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKM 603
YST +D+WSVGCIFAE + +PLF G S+++QL +IF+ +GTP E+ WPG +KLP K
Sbjct: 176 YSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLP-DYKP 234
Query: 604 TFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
TF ++P L+ + L G DLL K L Y+P RI+A EAL+H YF
Sbjct: 235 TFPKFPPK-DLEKVL--PRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF 282
Score = 54.0 bits (131), Expect = 1e-07
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ L ++ EGTYGVVY+A+DK+T EIVA
Sbjct: 1 YEKLEKLGEGTYGVVYKARDKKTGEIVA 28
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 376 bits (968), Expect = e-123
Identities = 137/293 (46%), Positives = 195/293 (66%), Gaps = 8/293 (2%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
++ + +I EGTYG VY+A++K+T E+VALK+++ME EKEGFPIT++REI L K +HPNI
Sbjct: 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNI 60
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
V ++EIV I++V +Y++HD+ L+ S + F ++KC M+QLL + +LH
Sbjct: 61 VRLKEIVTSKGKGSIYMVFEYMDHDLTGLL---DSPEVKFTESQIKCYMKQLLEGLQYLH 117
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKH-YTPIVVTLWYRSPELLLGCK 542
N ILHRD+K SN+L+++ G+LK+ DFGLAR Y YT V+TLWYR PELLLG
Sbjct: 118 SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGAT 177
Query: 543 EYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQK 602
Y +DMWSVGCI AE +P+F G ++LEQL +IF+ G+P ++ WPG SKLP +
Sbjct: 178 RYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFEN 237
Query: 603 MTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ + Y L+ ++ DLL K LT DP RI+AD+AL+H+YF
Sbjct: 238 LKPKKPYKRR--LREFF-KHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF 287
Score = 42.5 bits (101), Expect = 7e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ + +I EGTYG VY+A++K+T E+VA
Sbjct: 1 YEKIAQIGEGTYGQVYKARNKKTGELVA 28
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 351 bits (903), Expect = e-113
Identities = 131/300 (43%), Positives = 183/300 (61%), Gaps = 15/300 (5%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKMEKEKE---GFPITSLREINTLLKAQHPNIVTVRE 428
EGTY VVY+A+DK T IVA+K++K+ + KE G T+LREI L + +HPNI+ + +
Sbjct: 10 EGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLD 69
Query: 429 I-VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWI 487
+ SN I +V +++E D++ ++ + K V P ++K M L + +LH NWI
Sbjct: 70 VFGHKSN---INLVFEFMETDLEKVI---KDKSIVLTPADIKSYMLMTLRGLEYLHSNWI 123
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTP 547
LHRDLK +NLL++ G+LK+ DFGLAR +GSP + T VVT WYR+PELL G + Y
Sbjct: 124 LHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVG 183
Query: 548 IDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTFAE 607
+DMWSVGCIFAE L P G SD++QL +IF+ +GTP E+ WPG + LP + E
Sbjct: 184 VDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLP-----DYVE 238
Query: 608 YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSESPLPIDPAMFP 667
+ K ++ DLL + LT +P RITA +AL H YFS P P P+ P
Sbjct: 239 FKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPAPTPPSQLP 298
Score = 41.4 bits (98), Expect = 0.001
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 763 EGTYGVVYRAKDKRTDEIVAPCKSGNGKFW 792
EGTY VVY+A+DK T IVA K G+
Sbjct: 10 EGTYAVVYKARDKETGRIVAIKKIKLGERK 39
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 329 bits (846), Expect = e-105
Identities = 140/291 (48%), Positives = 198/291 (68%), Gaps = 8/291 (2%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
++ + +I EGTYGVVY+A+DK T EIVALK++++E E EG P T++REI+ L + HPNI
Sbjct: 1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNI 60
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
V + ++V N K+++V ++++ D+K M++ S P +K + QLL +A+ H
Sbjct: 61 VRLLDVVHSEN--KLYLVFEFLDLDLKKYMDS--SPLTGLDPPLIKSYLYQLLQGIAYCH 116
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
+ +LHRDLK NLL+ G LK+ DFGLAR +G P++ YT VVTLWYR+PE+LLG ++
Sbjct: 117 SHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQ 176
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKM 603
YSTP+D+WS+GCIFAE + PLF G S+++QL RIF+T+GTP+E +WPG + LP K
Sbjct: 177 YSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDY-KP 235
Query: 604 TFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
TF ++ L V L E G DLL K L YDP RI+A AL+H YF
Sbjct: 236 TFPKWAR-QDLSKVVPN--LDEDGLDLLSKMLVYDPAKRISAKAALQHPYF 283
Score = 47.3 bits (113), Expect = 2e-05
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ + +I EGTYGVVY+A+DK T EIVA
Sbjct: 1 YQKVEKIGEGTYGVVYKARDKLTGEIVA 28
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 318 bits (818), Expect = e-100
Identities = 133/317 (41%), Positives = 191/317 (60%), Gaps = 25/317 (7%)
Query: 356 QGCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTL 415
GC + +++ L ++ EGT+G VY+A+ +T +VALK++ M EK+GFPIT+LREI L
Sbjct: 2 YGCSKLRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKIL 61
Query: 416 LKAQHPNIVTVREIVV------GSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVK 469
K +HPN+V + ++ V +++V Y++HD+ L+E K ++K
Sbjct: 62 KKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVK---LTESQIK 118
Query: 470 CLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY----------GSP 519
C M QLL + +LH+N ILHRD+K +N+L+ ++GILK+ DFGLAR Y G
Sbjct: 119 CYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGG 178
Query: 520 LKH-YTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSR 578
YT +VVT WYR PELLLG + Y+T +D+W +GC+FAE P+ GKSD++QL
Sbjct: 179 GTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHL 238
Query: 579 IFKTMGTPNEKIWPGFSKLPAVQ-KMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTY 637
IFK GTP E+ WPG+ LP + +F YP L+ + L G DLL K L+
Sbjct: 239 IFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRT--LEERFGK--LGPEGLDLLSKLLSL 294
Query: 638 DPVTRITADEALRHDYF 654
DP R+TA +AL H YF
Sbjct: 295 DPYKRLTASDALEHPYF 311
Score = 38.1 bits (89), Expect = 0.019
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 747 QGCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
GC + +++ L ++ EGT+G VY+A+ +T +VA
Sbjct: 2 YGCSKLRDYEILGKLGEGTFGEVYKARQIKTGRVVA 37
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 316 bits (813), Expect = e-100
Identities = 133/291 (45%), Positives = 191/291 (65%), Gaps = 8/291 (2%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
++ L +I EGTYGVVY+A+DK T EIVA+K++K+ E EG P T+LREI L + HPNI
Sbjct: 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNI 60
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
+ + + V +++V ++++ D L + ++ +++ +K + QLL +A H
Sbjct: 61 IKLLD-VFRHK-GDLYLVFEFMDTD---LYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH 115
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
+ ILHRDLK NLL++ G+LK+ DFGLAR +GSP++ YT VVT WYR+PELLLG K
Sbjct: 116 SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKG 175
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKM 603
YSTP+D+WSVGCIFAE L PLF GKS+++QL +IF+T+GTP+ ++WP F+ L K
Sbjct: 176 YSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKF 235
Query: 604 TFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+F + + L + DLL + L YDP RITA++AL H YF
Sbjct: 236 SFPKKAGM-PLPKLF--PNASPQALDLLSQMLHYDPHKRITAEQALAHPYF 283
Score = 43.9 bits (104), Expect = 2e-04
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVAPCKSGNGKFWLENFPSR-IRTYHLQVESELNH 813
++ L +I EGTYGVVY+A+DK T EIVA K +F E P +R +++ ELNH
Sbjct: 1 YQKLGKIGEGTYGVVYKARDKLTGEIVA-IKKIKLRFESEGIPKTALR--EIKLLKELNH 57
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 312 bits (801), Expect = 1e-98
Identities = 128/294 (43%), Positives = 185/294 (62%), Gaps = 11/294 (3%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPN 422
+K L RI EG +G+V++AKD+ T E VALK++ + + + G P +LREI L QHP
Sbjct: 1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPY 60
Query: 423 IVTVREIV-VGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
+V + ++ GS +VM+Y+ D L E +R +++ +VK M+ LL VA+
Sbjct: 61 VVKLLDVFPHGSGF---VLVMEYMPSD---LSEVLRDEERPLPEAQVKSYMRMLLKGVAY 114
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSP-LKHYTPIVVTLWYRSPELLLG 540
+H N I+HRDLK +NLL+S G+LK+ DFGLAR + + Y+ V T WYR+PELL G
Sbjct: 115 MHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYG 174
Query: 541 CKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAV 600
++Y +D+W+VGCIFAE L PLF G++D+EQL+ +F+T+GTPNE+ WPG + LP
Sbjct: 175 ARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDY 234
Query: 601 QKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
K+TF E + L+ + + DLL L YDP R++A EALRH YF
Sbjct: 235 NKITFPESKPI-PLEEIFPDA--SPEALDLLKGLLVYDPSKRLSAAEALRHPYF 285
Score = 37.7 bits (88), Expect = 0.024
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 754 EFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+K L RI EG +G+V++AKD+ T E VA
Sbjct: 1 RYKILGRIGEGAHGIVFKAKDRETGETVA 29
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 300 bits (771), Expect = 2e-94
Identities = 127/292 (43%), Positives = 200/292 (68%), Gaps = 7/292 (2%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPN 422
++ + +I EGTYGVVY+ ++K+T +IVA+K++++E E+EG P T++REI+ L + QHPN
Sbjct: 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPN 60
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
IV ++++++ + +++++ +++ D+K ++++ + + VK + Q+L +
Sbjct: 61 IVCLQDVLMQES--RLYLIFEFLSMDLKKYLDSLPKGQYM-DAELVKSYLYQILQGILFC 117
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCK 542
H +LHRDLK NLL+ ++G++K+ DFGLAR +G P++ YT VVTLWYR+PE+LLG
Sbjct: 118 HSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSP 177
Query: 543 EYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQK 602
YSTP+D+WS+G IFAE +PLF G S+++QL RIF+ +GTP E +WPG + LP K
Sbjct: 178 RYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDY-K 236
Query: 603 MTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
TF ++ G L++ V L E G DLL K L YDP RI+A +AL H YF
Sbjct: 237 NTFPKWKK-GSLRSAVKN--LDEDGLDLLEKMLIYDPAKRISAKKALNHPYF 285
Score = 40.5 bits (95), Expect = 0.003
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 754 EFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ + +I EGTYGVVY+ ++K+T +IVA
Sbjct: 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVA 29
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 296 bits (761), Expect = 7e-93
Identities = 128/298 (42%), Positives = 182/298 (61%), Gaps = 18/298 (6%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLK----AQ 419
++ L I EG YG VY+A+D T VALK++++ +EG P+++LREI LLK +
Sbjct: 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREI-ALLKQLESFE 59
Query: 420 HPNIVTVREIVVGSNMD---KIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
HPNIV + ++ G D K+ +V ++V+ D+ + + + K P +K LM+QLL
Sbjct: 60 HPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLS--KCPKPGLPPETIKDLMRQLL 117
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
V LH + I+HRDLK N+L++ G +K+ DFGLAR Y + T +VVTLWYR+PE
Sbjct: 118 RGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMA-LTSVVVTLWYRAPE 176
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSK 596
+LL Y+TP+DMWSVGCIFAE PLF G S+ +QL +IF +G P+E+ WP
Sbjct: 177 VLLQS-SYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVS 235
Query: 597 LPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
LP + +F Y K+ V + E G DLL K LT++P RI+A EAL+H YF
Sbjct: 236 LP---RSSFPSYT-PRSFKSFVPE--ICEEGLDLLKKMLTFNPHKRISAFEALQHPYF 287
Score = 41.1 bits (97), Expect = 0.002
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ L I EG YG VY+A+D T VA
Sbjct: 1 YEELAEIGEGAYGTVYKARDLNTGRFVA 28
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 296 bits (759), Expect = 9e-93
Identities = 130/291 (44%), Positives = 193/291 (66%), Gaps = 8/291 (2%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
F+ + +I EGTYGVVY+A++K T E+VALK+++++ E EG P T++REI+ L + HPNI
Sbjct: 2 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 61
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
V + +++ +K+++V +++ D+K M+ + +P +K + QLL +A H
Sbjct: 62 VKLLDVI--HTENKLYLVFEFLHQDLKKFMDAS-PLSGIPLP-LIKSYLFQLLQGLAFCH 117
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
+ +LHRDLK NLL++ G +K+ DFGLAR +G P++ YT VVTLWYR+PE+LLGCK
Sbjct: 118 SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKY 177
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKM 603
YST +D+WS+GCIFAE + LF G S+++QL RIF+T+GTP+E +WPG + LP K
Sbjct: 178 YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDY-KP 236
Query: 604 TFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+F ++ V L E G DLL + L YDP RI+A AL H +F
Sbjct: 237 SFPKWA-RQDFSKVV--PPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF 284
Score = 43.6 bits (103), Expect = 3e-04
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
F+ + +I EGTYGVVY+A++K T E+VA
Sbjct: 2 FQKVEKIGEGTYGVVYKARNKLTGEVVA 29
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 293 bits (753), Expect = 3e-91
Identities = 130/315 (41%), Positives = 189/315 (60%), Gaps = 24/315 (7%)
Query: 364 FKCLNRIEEGTYGVVYRAKDK--RTDEIVALKRLKMEKEK-EGFPITSLREINTLLKAQH 420
++ I GTYG VY+AK K + + A+K+ K +KE+ G ++ REI L + +H
Sbjct: 2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH 61
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIP-GEVKCLMQQLLNAV 479
N+V++ E+ + ++++ DY EHD+ +++ R K+V IP VK L+ Q+LN V
Sbjct: 62 ENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGV 121
Query: 480 AHLHDNWILHRDLKTSNLLL----SHRGILKVGDFGLAREYGSPLK---HYTPIVVTLWY 532
+LH NW+LHRDLK +N+L+ RG++K+GD GLAR + +PLK P+VVT+WY
Sbjct: 122 HYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWY 181
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSD---------LEQLSRIFKTM 583
R+PELLLG + Y+ ID+W++GCIFAE L +EP+F G+ +QL RIF+ +
Sbjct: 182 RAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVL 241
Query: 584 GTPNEKIWPGFSKLP---AVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDP 639
GTP EK WP K+P + K + YP+ K G+DLL K L YDP
Sbjct: 242 GTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDP 301
Query: 640 VTRITADEALRHDYF 654
RITA+EAL H YF
Sbjct: 302 TKRITAEEALEHPYF 316
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 287 bits (736), Expect = 3e-89
Identities = 133/297 (44%), Positives = 202/297 (68%), Gaps = 9/297 (3%)
Query: 361 VEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQH 420
+++++ + +I EGTYGVVY+A+D+ T+E +ALK++++E+E EG P T++REI+ L + QH
Sbjct: 1 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH 60
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
NIV ++++V + ++++V +Y++ D+K M++ S P +K + Q+L +A
Sbjct: 61 GNIVRLQDVV--HSEKRLYLVFEYLDLDLKKHMDS--SPDFAKNPRLIKTYLYQILRGIA 116
Query: 481 HLHDNWILHRDLKTSNLLLSHR-GILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+ H + +LHRDLK NLL+ R LK+ DFGLAR +G P++ +T VVTLWYR+PE+LL
Sbjct: 117 YCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILL 176
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPA 599
G + YSTP+D+WSVGCIFAE + +PLF G S++++L +IF+ +GTPNE+ WPG + LP
Sbjct: 177 GSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPD 236
Query: 600 VQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSE 656
K F ++P L T V L G DLL K L DP RITA AL H+YF +
Sbjct: 237 Y-KSAFPKWPPK-DLATVVPT--LEPAGVDLLSKMLRLDPSKRITARAALEHEYFKD 289
Score = 42.9 bits (101), Expect = 5e-04
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 752 VEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+++++ + +I EGTYGVVY+A+D+ T+E +A
Sbjct: 1 MDQYEKVEKIGEGTYGVVYKARDRVTNETIA 31
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 288 bits (738), Expect = 3e-89
Identities = 128/309 (41%), Positives = 181/309 (58%), Gaps = 18/309 (5%)
Query: 358 CRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLK 417
C V +++ L +I +GT+G V++A+ K+T +IVALK++ ME EKEGFPIT+LREI L
Sbjct: 8 CDEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQL 67
Query: 418 AQHPNIVTVREI----VVGSNMDK--IFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCL 471
+H N+V + EI N K ++V ++ EHD+ L+ K F E+K +
Sbjct: 68 LKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVK---FTLSEIKKV 124
Query: 472 MQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLK----HYTPIV 527
M+ LLN + ++H N ILHRD+K +N+L++ GILK+ DFGLAR + YT V
Sbjct: 125 MKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRV 184
Query: 528 VTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPN 587
VTLWYR PELLLG ++Y PIDMW GCI AE P+ G ++ QL+ I + G+
Sbjct: 185 VTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSIT 244
Query: 588 EKIWPGFSKLPAVQKMTFAEYPNVG--GLKTKVAGSILTELGYDLLCKFLTYDPVTRITA 645
++WPG KL +KM E P +K ++ + DL+ K L DP RI A
Sbjct: 245 PEVWPGVDKLELFKKM---ELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDA 301
Query: 646 DEALRHDYF 654
D AL HD+F
Sbjct: 302 DTALNHDFF 310
Score = 39.3 bits (92), Expect = 0.008
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 749 CRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
C V +++ L +I +GT+G V++A+ K+T +IVA
Sbjct: 8 CDEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVA 41
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 284 bits (728), Expect = 3e-88
Identities = 130/290 (44%), Positives = 177/290 (61%), Gaps = 12/290 (4%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
L +I EGTYG V++AK++ T EIVALKR++++ + EG P ++LREI L + +H NIV +
Sbjct: 5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRL 64
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNW 486
+++ K+ +V +Y + D+K ++ P VK M QLL +A H +
Sbjct: 65 YDVLHSDK--KLTLVFEYCDQDLKKYFDSCNGDID---PEIVKSFMFQLLKGLAFCHSHN 119
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
+LHRDLK NLL++ G LK+ DFGLAR +G P++ Y+ VVTLWYR P++L G K YST
Sbjct: 120 VLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYST 179
Query: 547 PIDMWSVGCIFAEFL-CMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTF 605
IDMWS GCIFAE PLF G +QL RIF+ +GTP E+ WPG SKLP +
Sbjct: 180 SIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLP-----DY 234
Query: 606 AEYPNVGGLKTKVA-GSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
YP + V L G DLL L +PV RI+A+EAL+H YF
Sbjct: 235 KPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF 284
Score = 39.7 bits (93), Expect = 0.005
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 758 LNRIEEGTYGVVYRAKDKRTDEIVA 782
L +I EGTYG V++AK++ T EIVA
Sbjct: 5 LEKIGEGTYGTVFKAKNRETHEIVA 29
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 275 bits (706), Expect = 2e-85
Identities = 102/292 (34%), Positives = 156/292 (53%), Gaps = 39/292 (13%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
++ L ++ EG++G VY A+DK+T ++VA+K +K +K K+ LREI L K +HPNI
Sbjct: 1 YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKK-DRERILREIKILKKLKHPNI 59
Query: 424 VTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
V + ++ + DK+++VM+Y E D+ L++ K+ E + ++Q+L+A+ +L
Sbjct: 60 VRLYDVFE--DEDKLYLVMEYCEGGDLFDLLK----KRGRLSEDEARFYLRQILSALEYL 113
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCK 542
H I+HRDLK N+LL G +K+ DFGLAR+ K T V T Y +PE+LLG K
Sbjct: 114 HSKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTT-FVGTPEYMAPEVLLG-K 171
Query: 543 EYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQK 602
Y +D+WS+G I E L +P F G +QL +FK +G P P +
Sbjct: 172 GYGKAVDIWSLGVILYELLTGKPPFPGD---DQLLELFKKIGKPKPPFPPPEWDIS---- 224
Query: 603 MTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
DL+ K L DP R+TA+EAL+H +F
Sbjct: 225 ----------------------PEAKDLIRKLLVKDPEKRLTAEEALQHPFF 254
Score = 41.7 bits (99), Expect = 0.001
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ L ++ EG++G VY A+DK+T ++VA
Sbjct: 1 YEILEKLGEGSFGKVYLARDKKTGKLVA 28
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 276 bits (707), Expect = 4e-85
Identities = 132/299 (44%), Positives = 188/299 (62%), Gaps = 11/299 (3%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLK-AQH 420
+ ++ L +I EGTYG VY+A+DK T ++VALK+ ++E ++EG P T+LREI+ L ++
Sbjct: 1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSES 60
Query: 421 PNIVTVREIV-VGSNMDK--IFIVMDYVEHDMKSLMETMRSKKQVFIPGE-VKCLMQQLL 476
IV + ++ V K +++V +Y++ D+K M++ +P + +K M QLL
Sbjct: 61 IYIVRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLL 120
Query: 477 NAVAHLHDNWILHRDLKTSNLLL-SHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSP 535
VAH H + ++HRDLK NLL+ +G+LK+ D GL R + P+K YT +VTLWYR+P
Sbjct: 121 KGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAP 180
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFS 595
E+LLG YSTP+D+WSVGCIFAE +PLF G S+L+QL IFK +GTP E++WPG S
Sbjct: 181 EVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVS 240
Query: 596 KLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
KL + E+P A L+ G DLL K L YDP RI+A AL H YF
Sbjct: 241 KL-----RDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPYF 294
Score = 38.6 bits (90), Expect = 0.013
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+ ++ L +I EGTYG VY+A+DK T ++VA
Sbjct: 1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVA 30
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 273 bits (699), Expect = 4e-84
Identities = 126/291 (43%), Positives = 184/291 (63%), Gaps = 8/291 (2%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
FK L ++ EGTY VY+ +++ T EIVALK + ++ E EG P T++REI+ + + +H NI
Sbjct: 2 FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAE-EGTPSTAIREISLMKELKHENI 60
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
V + +++ +K+ +V +Y++ D+K M+T + P VK QLL +A H
Sbjct: 61 VRLHDVI--HTENKLMLVFEYMDKDLKKYMDT-HGVRGALDPNTVKSFTYQLLKGIAFCH 117
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
+N +LHRDLK NLL++ RG LK+ DFGLAR +G P+ ++ VVTLWYR+P++LLG +
Sbjct: 118 ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRT 177
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKM 603
YST ID+WSVGCI AE + PLF G ++ +QL +IF+ MGTP E WPG S+LP +
Sbjct: 178 YSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKP- 236
Query: 604 TFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
TF YP + LG DLL + L +P RI+A +AL+H +F
Sbjct: 237 TFPRYPPQ---DLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF 284
Score = 33.2 bits (76), Expect = 0.62
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
FK L ++ EGTY VY+ +++ T EIVA
Sbjct: 2 FKQLEKLGEGTYATVYKGRNRTTGEIVA 29
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 270 bits (692), Expect = 2e-82
Identities = 125/328 (38%), Positives = 187/328 (57%), Gaps = 37/328 (11%)
Query: 366 CLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKE------------GFPITSLREIN 413
+ EGTYG V +A D T +IVA+K++K+ + G T+LRE+
Sbjct: 13 KGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELK 72
Query: 414 TLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ 473
+ + +H NI+ + ++ V D I +VMD + D+K +++ +K +VKC++
Sbjct: 73 IMNEIKHENIMGLVDVYV--EGDFINLVMDIMASDLKKVVD----RKIRLTESQVKCILL 126
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPL------------- 520
Q+LN + LH + +HRDL +N+ ++ +GI K+ DFGLAR YG P
Sbjct: 127 QILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQR 186
Query: 521 -KHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
+ T VVTLWYR+PELL+G ++Y +DMWSVGCIFAE L +PLF G+++++QL RI
Sbjct: 187 REEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRI 246
Query: 580 FKTMGTPNEKIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDP 639
F+ +GTPNE WP KLP + T + + LKT ++ DLL L +P
Sbjct: 247 FELLGTPNEDNWPQAKKLPLYTEFTPRKPKD---LKTIF--PNASDDAIDLLQSLLKLNP 301
Query: 640 VTRITADEALRHDYFSESPLPIDPAMFP 667
+ RI+A EAL+H+YF PLP DP+ P
Sbjct: 302 LERISAKEALKHEYFKSDPLPCDPSQLP 329
Score = 35.5 bits (82), Expect = 0.12
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 757 CLNRIEEGTYGVVYRAKDKRTDEIVAPCKSGNGKFWLENFPSRIRTY------------H 804
+ EGTYG V +A D T +IVA K + + N ++ R
Sbjct: 13 KGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIE--ISNDVTKDRQLVGMCGIHFTTLRE 70
Query: 805 LQVESELNH 813
L++ +E+ H
Sbjct: 71 LKIMNEIKH 79
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 266 bits (682), Expect = 1e-81
Identities = 124/301 (41%), Positives = 177/301 (58%), Gaps = 20/301 (6%)
Query: 361 VEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQH 420
+E +K L+++ EG+Y VY+ + K T ++VALK +++E E EG P T++RE + L +H
Sbjct: 4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHE-EGAPFTAIREASLLKDLKH 62
Query: 421 PNIVTVREIVVGSNMDKIF-IVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
NIVT+ +I+ + K +V +Y++ D+K M+ V+ + QLL +
Sbjct: 63 ANIVTLHDII---HTKKTLTLVFEYLDTDLKQYMDDCGGGLS---MHNVRLFLFQLLRGL 116
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
A+ H +LHRDLK NLL+S RG LK+ DFGLAR P K Y+ VVTLWYR P++LL
Sbjct: 117 AYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLL 176
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSD-LEQLSRIFKTMGTPNEKIWPGFSKLP 598
G EYST +DMW VGCIF E PLF G +D +QL +IF+ +GTP E+ WPG S P
Sbjct: 177 GSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNP 236
Query: 599 AVQKMTFAEYPNVGGLKTKVAGSILTELGY-----DLLCKFLTYDPVTRITADEALRHDY 653
+ +F YP + + L +L KFL Y+P RI+A EA++H Y
Sbjct: 237 EFKPYSFPFYPP------RPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPY 290
Query: 654 F 654
F
Sbjct: 291 F 291
Score = 33.1 bits (76), Expect = 0.70
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 752 VEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+E +K L+++ EG+Y VY+ + K T ++VA
Sbjct: 4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVA 34
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 259 bits (665), Expect = 2e-79
Identities = 100/291 (34%), Positives = 147/291 (50%), Gaps = 31/291 (10%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
++ L ++ G++G VY+AK K T +IVA+K LK EK T+ REI L + HPNI
Sbjct: 1 YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNI 60
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
V + + D +++VM+Y E L + + E K + Q+L + +LH
Sbjct: 61 VRLIDAFEDK--DHLYLVMEYCEG--GDLFDYLSRGG-PLSEDEAKKIALQILRGLEYLH 115
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
N I+HRDLK N+LL G++K+ DFGLA++ T V T WY +PE+LLG
Sbjct: 116 SNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNG 175
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKM 603
Y +D+WS+G I E L +P F+G++ L+QL I + +G P E P +S
Sbjct: 176 YGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGS----- 230
Query: 604 TFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
E DL+ K L DP R TA+E L+H +F
Sbjct: 231 ---------------------EEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260
Score = 34.2 bits (79), Expect = 0.27
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ L ++ G++G VY+AK K T +IVA
Sbjct: 1 YELLRKLGSGSFGTVYKAKHKGTGKIVA 28
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 259 bits (664), Expect = 6e-79
Identities = 126/310 (40%), Positives = 176/310 (56%), Gaps = 23/310 (7%)
Query: 357 GCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLL 416
G R V++F + +I EGTYG VY+A+DK T E+VALK+++++ EKEGFPIT++REI L
Sbjct: 2 GKRCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILR 61
Query: 417 KAQHPNIVTVREIVVGSNMDKI------------FIVMDYVEHDMKSLMETMRSKKQVFI 464
+ H NIV ++EIV DK ++V +Y++HD+ L+E S F
Sbjct: 62 QLNHRNIVNLKEIVT----DKQDALDFKKDKGAFYLVFEYMDHDLMGLLE---SGLVHFS 114
Query: 465 PGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKH-Y 523
+K M+QLL + + H LHRD+K SN+LL+++G +K+ DFGLAR Y S Y
Sbjct: 115 EDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPY 174
Query: 524 TPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTM 583
T V+TLWYR PELLLG + Y ID+WS GCI E +P+F +L QL I +
Sbjct: 175 TNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLC 234
Query: 584 GTPNEKIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRI 643
G+P +WP KLP M + + + S + DLL LT DP R
Sbjct: 235 GSPCPAVWPDVIKLPYFNTMKPKKQYR---RRLREEFSFIPTPALDLLDHMLTLDPSKRC 291
Query: 644 TADEALRHDY 653
TA+EAL +
Sbjct: 292 TAEEALNSPW 301
Score = 46.7 bits (111), Expect = 3e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 748 GCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
G R V++F + +I EGTYG VY+A+DK T E+VA
Sbjct: 2 GKRCVDKFDIIGQIGEGTYGQVYKARDKDTGELVA 36
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 258 bits (661), Expect = 5e-78
Identities = 105/301 (34%), Positives = 158/301 (52%), Gaps = 34/301 (11%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKA-QHPNIVTVREIVV 431
G YGVV A DKRT VA+K++ + LREI LL+ +H NI+ + +I+
Sbjct: 11 GAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREI-KLLRHLRHENIIGLLDILR 69
Query: 432 ---GSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWIL 488
+ + ++IV + +E D+ ++++ Q ++ + Q+L + +LH ++
Sbjct: 70 PPSPEDFNDVYIVTELMETDLHKVIKS----PQPLTDDHIQYFLYQILRGLKYLHSANVI 125
Query: 489 HRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHY---TPIVVTLWYRSPELLLGCKEYS 545
HRDLK SN+L++ LK+ DFGLAR T VVT WYR+PELLL Y+
Sbjct: 126 HRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYT 185
Query: 546 TPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSK--------- 596
ID+WSVGCIFAE L +PLF G+ ++QL+ I + +GTP+E+ +
Sbjct: 186 KAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKS 245
Query: 597 LPAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFS 655
LP K ++ +P + DLL K L +DP RITADEAL H Y +
Sbjct: 246 LPKKPKKPLSKLFPGA------------SPEAIDLLEKMLVFDPKKRITADEALAHPYLA 293
Query: 656 E 656
+
Sbjct: 294 Q 294
Score = 32.9 bits (76), Expect = 0.93
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 764 GTYGVVYRAKDKRTDEIVA 782
G YGVV A DKRT VA
Sbjct: 11 GAYGVVCSAVDKRTGRKVA 29
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 252 bits (647), Expect = 1e-76
Identities = 110/294 (37%), Positives = 173/294 (58%), Gaps = 14/294 (4%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQ-HPN 422
+K + ++ +GT+G VY A++K T E+VA+K++K +K +LRE+ +L K HPN
Sbjct: 1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMK-KKFYSWEECMNLREVKSLRKLNEHPN 59
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
IV ++E+ + D+++ V +Y+E ++ LM K + F ++ ++ Q+L +AH+
Sbjct: 60 IVKLKEVFREN--DELYFVFEYMEGNLYQLM--KDRKGKPFSESVIRSIIYQILQGLAHI 115
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGS--PLKHYTPIVVTLWYRSPELLLG 540
H + HRDLK NLL+S ++K+ DFGLARE S P YT V T WYR+PE+LL
Sbjct: 116 HKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP---YTDYVSTRWYRAPEILLR 172
Query: 541 CKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAV 600
YS+P+D+W++GCI AE + PLF G S+++QL +I +GTP ++ WP KL
Sbjct: 173 STSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKL--A 230
Query: 601 QKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
K+ F ++ + E DL+ L +DP R TA +AL+H YF
Sbjct: 231 SKLGFRFPQFAPTSLHQLIPNASPEA-IDLIKDMLRWDPKKRPTASQALQHPYF 283
Score = 35.6 bits (83), Expect = 0.11
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+K + ++ +GT+G VY A++K T E+VA
Sbjct: 1 YKVIKQLGDGTFGSVYLARNKETGELVA 28
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 246 bits (629), Expect = 4e-74
Identities = 110/294 (37%), Positives = 161/294 (54%), Gaps = 7/294 (2%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+++ L + EG YGVV + ++K T EIVA+K+ K ++ E T+LRE+ L + +H
Sbjct: 1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHE 60
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
NIV ++E ++++V +YVE + L+E P V+ + QLL A+A+
Sbjct: 61 NIVNLKEAFRRKG--RLYLVFEYVERTLLELLEASPGGLP---PDAVRSYIWQLLQAIAY 115
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-GSPLKHYTPIVVTLWYRSPELLLG 540
H + I+HRD+K N+L+S G+LK+ DFG AR P T V T WYR+PELL+G
Sbjct: 116 CHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVG 175
Query: 541 CKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAV 600
Y P+D+W++GCI AE L EPLF G SD++QL I K +G FS P
Sbjct: 176 DTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRF 235
Query: 601 QKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ F E L+ + G ++ D L L DP R+T DE L+H YF
Sbjct: 236 AGVAFPEPSQPESLERRYPG-KVSSPALDFLKACLRMDPKERLTCDELLQHPYF 288
Score = 38.5 bits (90), Expect = 0.014
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+++ L + EG YGVV + ++K T EIVA
Sbjct: 1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVA 30
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 229 bits (585), Expect = 4e-68
Identities = 119/295 (40%), Positives = 176/295 (59%), Gaps = 11/295 (3%)
Query: 361 VEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQH 420
+E + L+++ EGTY V++ + K T+ +VALK +++E E EG P T++RE++ L +H
Sbjct: 4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKNLKH 62
Query: 421 PNIVTVREIVVGSNMDK-IFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
NIVT+ +I+ + ++ + +V +Y++ D+K ++ + + VK M QLL +
Sbjct: 63 ANIVTLHDII---HTERCLTLVFEYLDSDLKQYLDNCGNLMSMH---NVKIFMFQLLRGL 116
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
++ H ILHRDLK NLL++ +G LK+ DFGLAR P K Y+ VVTLWYR P++LL
Sbjct: 117 SYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLL 176
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPA 599
G EYSTPIDMW VGCI E P+F G + E+L IF+ +GTP E+ WPG +
Sbjct: 177 GSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEE 236
Query: 600 VQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ F +Y L L G DLL L Y+ +RI+A+ ALRH YF
Sbjct: 237 FRSYLFPQY-RAQPLINHAPR--LDTDGIDLLSSLLLYETKSRISAEAALRHSYF 288
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 223 bits (569), Expect = 1e-65
Identities = 125/299 (41%), Positives = 181/299 (60%), Gaps = 11/299 (3%)
Query: 357 GCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLL 416
G +E + L ++ EGTY V++ + K T+ +VALK +++E E EG P T++RE++ L
Sbjct: 1 GFGKMETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLK 59
Query: 417 KAQHPNIVTVREIVVGSNMDK-IFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQL 475
+H NIVT+ +IV + DK + +V +Y++ D+K M+ + + VK + Q+
Sbjct: 60 DLKHANIVTLHDIV---HTDKSLTLVFEYLDKDLKQYMDDCGNIMSMH---NVKIFLYQI 113
Query: 476 LNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSP 535
L +A+ H +LHRDLK NLL++ RG LK+ DFGLAR P K Y+ VVTLWYR P
Sbjct: 114 LRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPP 173
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFS 595
++LLG EYST IDMW VGCIF E PLF G + ++L IF+ +GTP E+ WPG S
Sbjct: 174 DVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGIS 233
Query: 596 KLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ F +Y + A + TE G +LL KFL Y+ RI+A+EA++H YF
Sbjct: 234 SNDEFKNYNFPKYKPQPLINH--APRLDTE-GIELLTKFLQYESKKRISAEEAMKHAYF 289
Score = 29.6 bits (66), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 748 GCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
G +E + L ++ EGTY V++ + K T+ +VA
Sbjct: 1 GFGKMETYIKLEKLGEGTYATVFKGRSKLTENLVA 35
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 222 bits (567), Expect = 1e-65
Identities = 118/293 (40%), Positives = 174/293 (59%), Gaps = 26/293 (8%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKA----QHPNIVTVRE 428
G YG VY+A+D + VALK ++++ ++G P++++RE+ LLK HPNIV + +
Sbjct: 11 GAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREV-ALLKRLEAFDHPNIVRLMD 69
Query: 429 IVVGSNMD---KIFIVMDYVEHDMKSLMETMRSKKQVFIPG----EVKCLMQQLLNAVAH 481
+ S D K+ +V ++V+ D+++ ++ +V PG +K LM+Q L +
Sbjct: 70 VCATSRTDRETKVTLVFEHVDQDLRTYLD------KVPPPGLPAETIKDLMRQFLRGLDF 123
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGC 541
LH N I+HRDLK N+L++ G +K+ DFGLAR Y + TP+VVTLWYR+PE+LL
Sbjct: 124 LHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMA-LTPVVVTLWYRAPEVLLQ- 181
Query: 542 KEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQ 601
Y+TP+DMWSVGCIFAE +PLF G S+ +QL +IF +G P E WP LP
Sbjct: 182 STYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLP--- 238
Query: 602 KMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ F+ P V I E G LL + LT++P RI+A AL+H +F
Sbjct: 239 RGAFS--PRGPRPVQSVVPEI-EESGAQLLLEMLTFNPHKRISAFRALQHPFF 288
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 220 bits (562), Expect = 1e-64
Identities = 119/300 (39%), Positives = 174/300 (58%), Gaps = 9/300 (3%)
Query: 357 GCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLL 416
G +E + L+++ EGTY VY+ + K TD +VALK +++E E EG P T++RE++ L
Sbjct: 1 GFGKLETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLK 59
Query: 417 KAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
+H NIVT+ +I+ + +V +Y++ D+K ++ + + VK + QLL
Sbjct: 60 DLKHANIVTLHDII--HTEKSLTLVFEYLDKDLKQYLDDCGNSINMH---NVKLFLFQLL 114
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
+ + H +LHRDLK NLL++ RG LK+ DFGLAR P K Y+ VVTLWYR P+
Sbjct: 115 RGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPD 174
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSK 596
+LLG +YST IDMW VGCIF E PLF G + EQL IF+ +GTP E+ WPG
Sbjct: 175 ILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPG--- 231
Query: 597 LPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSE 656
+ + ++ YP L G +LL K L ++ RI+A+EA++H YF
Sbjct: 232 ILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHC 291
Score = 31.9 bits (72), Expect = 1.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 748 GCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
G +E + L+++ EGTY VY+ + K TD +VA
Sbjct: 1 GFGKLETYIKLDKLGEGTYATVYKGRSKLTDNLVA 35
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 212 bits (541), Expect = 6e-62
Identities = 113/291 (38%), Positives = 163/291 (56%), Gaps = 12/291 (4%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
L ++ EG+Y VY+ + ++VALK + M+ E EG P T++RE + L +H NIV +
Sbjct: 10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTE-EGVPFTAIREASLLKGLKHANIVLL 68
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNW 486
+I+ + + V +Y+ D L + M P V+ M QLL +A++H
Sbjct: 69 HDII--HTKETLTFVFEYMHTD---LAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQH 123
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
ILHRDLK NLL+S+ G LK+ DFGLAR P + Y+ VVTLWYR P++LLG +YS+
Sbjct: 124 ILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSS 183
Query: 547 PIDMWSVGCIFAEFLCMEPLFTGKSD-LEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTF 605
+D+W GCIF E L +P F G SD EQL +I+ +G P E WPG SKLP + F
Sbjct: 184 ALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWF 243
Query: 606 --AEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ + + +++ E DL + L P RI+A +AL H YF
Sbjct: 244 LPCKPQQLRVVWKRLSRPPKAE---DLASQMLMMFPKDRISAQDALLHPYF 291
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 210 bits (537), Expect = 1e-60
Identities = 107/320 (33%), Positives = 165/320 (51%), Gaps = 55/320 (17%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGF-----------PITSLREI 412
++ L ++ +G YG+V++A D+RT E+VALK K + F I L+E+
Sbjct: 9 YEILQKLGKGAYGIVWKAIDRRTKEVVALK-----KIFDAFRNATDAQRTFREIMFLQEL 63
Query: 413 NTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLM 472
HPNIV + ++ N I++V +Y+E D+ +++ + + + +M
Sbjct: 64 G-----DHPNIVKLLNVIKAENDKDIYLVFEYMETDLHAVI-----RANILEDVHKRYIM 113
Query: 473 QQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-------EYGSPLKHYTP 525
QLL A+ ++H ++HRDLK SN+LL+ +K+ DFGLAR +P+ T
Sbjct: 114 YQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPV--LTD 171
Query: 526 IVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGT 585
V T WYR+PE+LLG Y+ +DMWSVGCI E L +PLF G S L QL +I + +G
Sbjct: 172 YVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGP 231
Query: 586 PN----EKIWPGF-----SKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLT 636
P+ E I F LP+ + E L ++ DLL K L
Sbjct: 232 PSAEDIESIKSPFAATMLDSLPSRPRKPLDEL-----LPKASDDAL------DLLKKLLV 280
Query: 637 YDPVTRITADEALRHDYFSE 656
++P R+TA+EAL H Y ++
Sbjct: 281 FNPNKRLTAEEALEHPYVAQ 300
Score = 37.9 bits (89), Expect = 0.025
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ L ++ +G YG+V++A D+RT E+VA
Sbjct: 9 YEILQKLGKGAYGIVWKAIDRRTKEVVA 36
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 208 bits (531), Expect = 2e-60
Identities = 121/303 (39%), Positives = 169/303 (55%), Gaps = 18/303 (5%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+ ++ L ++ EG+Y VY+ K K ++VALK +++++E EG P T++RE + L +H
Sbjct: 5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEE-EGTPFTAIREASLLKGLKHA 63
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
NIV + +I+ + + +V +YV D L + M P VK + QLL +++
Sbjct: 64 NIVLLHDII--HTKETLTLVFEYVHTD---LCQYMDKHPGGLHPENVKLFLFQLLRGLSY 118
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGC 541
+H +ILHRDLK NLL+S G LK+ DFGLAR P Y+ VVTLWYR P++LLG
Sbjct: 119 IHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGS 178
Query: 542 KEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLE-QLSRIFKTMGTPNEKIWPGFSKLPAV 600
EYST +DMW VGCIF E + F G D++ QL RIF +GTPNE WPG LP
Sbjct: 179 TEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHF 238
Query: 601 QKMTFAEYPNVGGLKTKVAGSILTELGY-----DLLCKFLTYDPVTRITADEALRHDYFS 655
+ F Y K +L Y DL K L P R++A AL H+YFS
Sbjct: 239 KPERFTLY------SPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFS 292
Query: 656 ESP 658
+ P
Sbjct: 293 DLP 295
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 205 bits (525), Expect = 7e-60
Identities = 107/293 (36%), Positives = 167/293 (56%), Gaps = 13/293 (4%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLK-AQHPN 422
+K L +I EGT+ V +A+ ++T + A+K +K + K + +LREI L + + HPN
Sbjct: 1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMK-KHFKSLEQVNNLREIQALRRLSPHPN 59
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
I+ + E++ ++ +V + + DM +L E ++ +K+ VK M QLL ++ H+
Sbjct: 60 ILRLIEVLFDRKTGRLALVFELM--DM-NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHM 116
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLARE-YGSPLKHYTPIVVTLWYRSPELLLGC 541
H N I HRD+K N+L+ ILK+ DFG R Y P YT + T WYR+PE LL
Sbjct: 117 HRNGIFHRDIKPENILI-KDDILKLADFGSCRGIYSKP--PYTEYISTRWYRAPECLLTD 173
Query: 542 KEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQ 601
Y +D+W+VGC+F E L + PLF G ++L+Q+++I +GTP+ ++ F K +
Sbjct: 174 GYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKS---R 230
Query: 602 KMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
M + +P+ G + + G DLL K L YDP RITA +ALRH YF
Sbjct: 231 HMNYN-FPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPYF 282
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 207 bits (530), Expect = 9e-60
Identities = 114/336 (33%), Positives = 166/336 (49%), Gaps = 45/336 (13%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
++ L+ I EG YG+V A K T VA+K++ E + F +LREI L + +H
Sbjct: 5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKIS-PFEHQTFCQRTLREIKILRRFKHE 63
Query: 422 NIVTVREIVVGSN---MDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
NI+ + +I+ + + ++IV + +E D+ L++T Q ++ + Q+L
Sbjct: 64 NIIGILDIIRPPSFESFNDVYIVQELMETDLYKLIKT-----QHLSNDHIQYFLYQILRG 118
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHY---TPIVVTLWYRSP 535
+ ++H +LHRDLK SNLLL+ LK+ DFGLAR H T V T WYR+P
Sbjct: 119 LKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAP 178
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP--------- 586
E++L K Y+ ID+WSVGCI AE L PLF GK L QL+ I +GTP
Sbjct: 179 EIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCII 238
Query: 587 NEKIWPGFSKLPAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITA 645
+ + LP K+ + + +PN DLL K LT++P RIT
Sbjct: 239 SLRARNYIKSLPFKPKVPWNKLFPNA------------DPKALDLLDKMLTFNPHKRITV 286
Query: 646 DEALRHDY-----------FSESPLPIDPAMFPTWP 670
+EAL H Y +E P P D +F P
Sbjct: 287 EEALAHPYLEQYHDPSDEPVAEEPFPFDFELFDDLP 322
Score = 30.7 bits (70), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++ L+ I EG YG+V A K T VA
Sbjct: 5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVA 34
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 206 bits (525), Expect = 4e-59
Identities = 110/317 (34%), Positives = 170/317 (53%), Gaps = 21/317 (6%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+K + I G YGVV A D R+ + VA+K++ + +LRE+ L +H
Sbjct: 5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHD 64
Query: 422 NIVTVREIVV--GSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
NI+ +R+I+ G++ +++VMD +E D+ ++ + Q ++ + QLL +
Sbjct: 65 NIIAIRDILRPPGADFKDVYVVMDLMESDLHHIIHS----DQPLTEEHIRYFLYQLLRGL 120
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-GSPLKH---YTPIVVTLWYRSP 535
++H ++HRDLK SNLL++ L++GDFG+AR SP +H T V T WYR+P
Sbjct: 121 KYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAP 180
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFS 595
ELLL EY+T IDMWSVGCIFAE L LF GK+ + QL I +G+P+E++
Sbjct: 181 ELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEV----- 235
Query: 596 KLPAVQKMTFAEYPNVGGLKTKVAGSIL----TELGYDLLCKFLTYDPVTRITADEALRH 651
L + +Y K V S + + DLL + L +DP RIT ++AL+H
Sbjct: 236 -LNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH 294
Query: 652 DYFSESPLPID-PAMFP 667
+ ++ P D P P
Sbjct: 295 PFLAQYHDPDDEPTCPP 311
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 202 bits (515), Expect = 4e-58
Identities = 117/314 (37%), Positives = 183/314 (58%), Gaps = 32/314 (10%)
Query: 369 RIEEGTYGVVYRAK--DKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
++ GTYG VY+AK D + D ALK++ E G +++ REI L + +HPN++++
Sbjct: 8 KVGRGTYGHVYKAKRKDGKDDRDYALKQI----EGTGISMSACREIALLRELKHPNVISL 63
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRS----KKQVFIP-GEVKCLMQQLLNAVAH 481
+++ + K++++ DY EHD+ +++ R+ KK V +P G VK L+ Q+L+ + +
Sbjct: 64 QKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHY 123
Query: 482 LHDNWILHRDLKTSNLLL----SHRGILKVGDFGLAREYGSPLK---HYTPIVVTLWYRS 534
LH NW+LHRDLK +N+L+ RG +K+ D G AR + SPLK P+VVT WYR+
Sbjct: 124 LHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA 183
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSD---------LEQLSRIFKTMGT 585
PELLLG + Y+ ID+W++GCIFAE L EP+F + + +QL RIF MG
Sbjct: 184 PELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGF 243
Query: 586 PNEKIWPGFSKLPA----VQKMTFAEYPNVGGLKTKVAGSILTE-LGYDLLCKFLTYDPV 640
P +K W K+P ++ Y N +K + + + LL K LT DP+
Sbjct: 244 PADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPI 303
Query: 641 TRITADEALRHDYF 654
RIT+++A++ YF
Sbjct: 304 KRITSEQAMQDPYF 317
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 202 bits (516), Expect = 7e-58
Identities = 112/299 (37%), Positives = 158/299 (52%), Gaps = 29/299 (9%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREI 429
I G YG+V AK+ T+E VA+K++ + +LREI L H N++ +++I
Sbjct: 13 IGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDI 72
Query: 430 VVGSNMDK---IFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNW 486
+ + + ++IV + ++ D L + +RS Q + + QLL + ++H
Sbjct: 73 MPPPHREAFNDVYIVYELMDTD---LHQIIRSS-QTLSDDHCQYFLYQLLRGLKYIHSAN 128
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
+LHRDLK SNLLL+ LK+ DFGLAR T VVT WYR+PELLL C EY+T
Sbjct: 129 VLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTT 188
Query: 547 PIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP---------NEKIWPGFSKL 597
ID+WSVGCIFAE L +PLF GK + QL I + +G+P NEK L
Sbjct: 189 AIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSL 248
Query: 598 PAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFS 655
P + +FA +P+ L DLL K L +DP RIT +EAL H Y +
Sbjct: 249 PYTPRQSFARLFPHA------------NPLAIDLLEKMLVFDPSKRITVEEALAHPYLA 295
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 200 bits (509), Expect = 1e-57
Identities = 116/300 (38%), Positives = 180/300 (60%), Gaps = 17/300 (5%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKD-KRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQ- 419
++++C+ I EG YG V++A+D K VALKR++++ +EG P++++RE+ L +
Sbjct: 1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET 60
Query: 420 --HPNIVTVREIVVGSNMD---KIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQ 474
HPN+V + ++ S D K+ +V ++V+ D+ + ++ + + +K +M Q
Sbjct: 61 FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLD--KVPEPGVPTETIKDMMFQ 118
Query: 475 LLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRS 534
LL + LH + ++HRDLK N+L++ G +K+ DFGLAR Y S T +VVTLWYR+
Sbjct: 119 LLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY-SFQMALTSVVVTLWYRA 177
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGF 594
PE+LL Y+TP+D+WSVGCIFAE +PLF G SD++QL +I +G P E+ WP
Sbjct: 178 PEVLLQ-SSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRD 236
Query: 595 SKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
LP + F ++ V + ELG DLL K LT++P RI+A AL H YF
Sbjct: 237 VALP---RQAFHSKS-AQPIEKFVTD--IDELGKDLLLKCLTFNPAKRISAYSALSHPYF 290
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 195 bits (497), Expect = 1e-55
Identities = 118/322 (36%), Positives = 182/322 (56%), Gaps = 48/322 (14%)
Query: 369 RIEEGTYGVVYRA--KDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
++ GTYG VY+A KD + ++ ALK++ E G +++ REI L + +HPN++ +
Sbjct: 8 KVGRGTYGHVYKAKRKDGKDEKEYALKQI----EGTGISMSACREIALLRELKHPNVIAL 63
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGE-----VKCLMQQLLNAVAH 481
+++ + + K++++ DY EHD+ +++ R+ K P + VK L+ Q+L+ + +
Sbjct: 64 QKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHY 123
Query: 482 LHDNWILHRDLKTSNLLL----SHRGILKVGDFGLAREYGSPLK---HYTPIVVTLWYRS 534
LH NW+LHRDLK +N+L+ RG +K+ D G AR + SPLK P+VVT WYR+
Sbjct: 124 LHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA 183
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSD---------LEQLSRIFKTMGT 585
PELLLG + Y+ ID+W++GCIFAE L EP+F + + +QL RIF MG
Sbjct: 184 PELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGF 243
Query: 586 PNEKIWPGFSKLPAVQKMTFAEYPNVGG--LKTKVAGSILTELG-----------YDLLC 632
P +K W K+P EYP + +T A S L + + LL
Sbjct: 244 PADKDWEDIRKMP--------EYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQ 295
Query: 633 KFLTYDPVTRITADEALRHDYF 654
K LT DP RIT+++AL+ YF
Sbjct: 296 KLLTMDPTKRITSEQALQDPYF 317
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 191 bits (486), Expect = 2e-54
Identities = 102/301 (33%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKR-LKMEKEKEGFPITSLREINTLLKAQH 420
E+++ L + EG+YG+V + K K T +IVA+K+ L+ E +K I ++REI L + +H
Sbjct: 1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKI-AMREIRMLKQLRH 59
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLME-------TMRSKKQVFIPGEVKCLMQ 473
N+V + E V ++++V ++V+H + +E R +K +F
Sbjct: 60 ENLVNLIE--VFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLF---------- 107
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYR 533
Q+L + H + I+HRD+K N+L+S G++K+ DFG AR +P + YT V T WYR
Sbjct: 108 QILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYR 167
Query: 534 SPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPG 593
+PELL+G +Y +D+W+VGC+ E L EPLF G SD++QL I K +G +
Sbjct: 168 APELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEI 227
Query: 594 FSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDY 653
F K P M E + L+ + L+ L DL + L DP R ++ + L H++
Sbjct: 228 FQKNPLFAGMRLPEVKEIEPLEKRFPK--LSGLVLDLAKQCLRIDPDDRPSSSQLLHHEF 285
Query: 654 F 654
F
Sbjct: 286 F 286
Score = 30.8 bits (70), Expect = 3.2
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
E+++ L + EG+YG+V + K K T +IVA
Sbjct: 1 EKYENLGLVGEGSYGMVMKCKHKETGQIVA 30
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 184 bits (470), Expect = 3e-52
Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 19/299 (6%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPIT---SLREINTLLKA 418
E+++ L++I EG+YGVV++ +++ T +IVA+K+ +E E + P+ +LREI L +
Sbjct: 1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKF-VESEDD--PVIKKIALREIRMLKQL 57
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
+HPN+V + E V K+ +V +Y +H +++ + + +K ++ Q L A
Sbjct: 58 KHPNLVNLIE--VFRRKRKLHLVFEYCDH---TVLNELEKNPRGVPEHLIKKIIWQTLQA 112
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL 538
V H + +HRD+K N+L++ +G +K+ DFG AR P YT V T WYR+PELL
Sbjct: 113 VNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELL 172
Query: 539 LGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGT---PNEKIWPGFS 595
+G +Y P+D+W++GC+FAE L +PL+ GKSD++QL I KT+G +++I FS
Sbjct: 173 VGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQI---FS 229
Query: 596 KLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ ++ E L++K L L L DP R++ +E L H YF
Sbjct: 230 TNQFFKGLSIPEPETREPLESKFPNISSPAL--SFLKGCLQMDPTERLSCEELLEHPYF 286
Score = 36.6 bits (85), Expect = 0.052
Identities = 13/30 (43%), Positives = 25/30 (83%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
E+++ L++I EG+YGVV++ +++ T +IVA
Sbjct: 1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVA 30
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 182 bits (463), Expect = 3e-52
Identities = 70/192 (36%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREI 429
+ EG +G VY A+DK+T + VA+K +K E LREI L K HPNIV + +
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLNHPNIVKLYGV 59
Query: 430 VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILH 489
+ + +++VM+Y E SL + ++ + E+ ++ Q+L + +LH N I+H
Sbjct: 60 F--EDENHLYLVMEYCEG--GSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIH 115
Query: 490 RDLKTSNLLLSHR-GILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPI 548
RDLK N+LL G +K+ DFGL++ S IV T Y +PE+LLG YS
Sbjct: 116 RDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKS 175
Query: 549 DMWSVGCIFAEF 560
D+WS+G I E
Sbjct: 176 DIWSLGVILYEL 187
Score = 33.7 bits (78), Expect = 0.35
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 761 IEEGTYGVVYRAKDKRTDEIVA 782
+ EG +G VY A+DK+T + VA
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVA 22
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 178 bits (454), Expect = 1e-49
Identities = 102/314 (32%), Positives = 162/314 (51%), Gaps = 39/314 (12%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRT--DEIVALKRLKMEKEKEGFPITSLREINTLLK--AQ 419
++ + + +G YG+V A++ T +E VA+K++ K+ +LRE+ LL+
Sbjct: 2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALREL-KLLRHFRG 60
Query: 420 HPNIVTV--REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
H NI + +IV N +++++ + +E D+ ++ RS Q + + Q+L
Sbjct: 61 HKNITCLYDMDIVFPGNFNELYLYEELMEADLHQII---RSG-QPLTDAHFQSFIYQILC 116
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLK-----HYTPIVVTLWY 532
+ ++H +LHRDLK NLL++ LK+ DFGLAR + S T V T WY
Sbjct: 117 GLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGF-SENPGENAGFMTEYVATRWY 175
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNE---- 588
R+PE++L + Y+ ID+WSVGCI AE L +P+F GK ++QL++I + +GTP+E
Sbjct: 176 RAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLS 235
Query: 589 -----KIWPGFSKLPAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTR 642
K LP + K F +PN L DLL K L +DP R
Sbjct: 236 RIGSPKAQNYIRSLPNIPKKPFESIFPNA------------NPLALDLLEKLLAFDPTKR 283
Query: 643 ITADEALRHDYFSE 656
I+ +EAL H Y +
Sbjct: 284 ISVEEALEHPYLAI 297
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 177 bits (449), Expect = 1e-49
Identities = 111/294 (37%), Positives = 162/294 (55%), Gaps = 10/294 (3%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPN 422
+F+ L + EG YGVV + + K T EIVA+K+ K +E E T+LRE+ L + N
Sbjct: 2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN 61
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
IV ++E K+++V +YVE +M L+E M + P +V+ + QL+ A+
Sbjct: 62 IVELKEAF--RRRGKLYLVFEYVEKNMLELLEEMPNGV---PPEKVRSYIYQLIKAIHWC 116
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLK-HYTPIVVTLWYRSPELLLGC 541
H N I+HRD+K NLL+SH +LK+ DFG AR +YT V T WYRSPELLLG
Sbjct: 117 HKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGA 176
Query: 542 KEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGT-PNEKIWPGFSKLPAV 600
Y +DMWSVGCI E +PLF G+S+++QL I K +G P E++ +S P
Sbjct: 177 P-YGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSN-PRF 234
Query: 601 QKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ F + L+ + G IL+ + DL+ L +P R ++ L H F
Sbjct: 235 HGLRFPAVNHPQSLERRYLG-ILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF 287
Score = 30.4 bits (68), Expect = 4.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 754 EFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+F+ L + EG YGVV + + K T EIVA
Sbjct: 2 KFEVLGVVGEGAYGVVLKCRHKETKEIVA 30
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 176 bits (448), Expect = 1e-48
Identities = 105/319 (32%), Positives = 162/319 (50%), Gaps = 52/319 (16%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVG 432
G+ G+V+ A D D+ VA+K++ + + +LREI + + H NIV V E++
Sbjct: 16 GSNGLVFSAVDSDCDKRVAVKKIVLTDPQS--VKHALREIKIIRRLDHDNIVKVYEVLGP 73
Query: 433 SN------------MDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGE-VKCLMQQLLNAV 479
S ++ ++IV +Y+E D+ +++E Q + E + M QLL +
Sbjct: 74 SGSDLTEDVGSLTELNSVYIVQEYMETDLANVLE------QGPLSEEHARLFMYQLLRGL 127
Query: 480 AHLHDNWILHRDLKTSNLLLSHRG-ILKVGDFGLAR----EYGSPLKHYTPIVVTLWYRS 534
++H +LHRDLK +N+ ++ +LK+GDFGLAR Y S + + +VT WYRS
Sbjct: 128 KYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHY-SHKGYLSEGLVTKWYRS 186
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGF 594
P LLL Y+ IDMW+ GCIFAE L +PLF G +LEQ+ I ++
Sbjct: 187 PRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILES------------ 234
Query: 595 SKLPAVQKMTFAEYPNVGGLKTKVAGSI----LTEL-------GYDLLCKFLTYDPVTRI 643
+P V++ E NV + G L +L D L + LT++P+ R+
Sbjct: 235 --VPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRL 292
Query: 644 TADEALRHDYFSESPLPID 662
TA+EAL H Y S P D
Sbjct: 293 TAEEALMHPYMSCYSCPFD 311
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 174 bits (444), Expect = 4e-48
Identities = 99/309 (32%), Positives = 151/309 (48%), Gaps = 32/309 (10%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
L+ + G YG V A D +T VA+K+L + + RE+ L H N++ +
Sbjct: 20 LSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGL 79
Query: 427 REI----VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
++ + +++V + D+ +++ K Q ++ L+ Q+L + ++
Sbjct: 80 LDVFTPASSLEDFQDVYLVTHLMGADLNNIV-----KCQKLSDDHIQFLVYQILRGLKYI 134
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCK 542
H I+HRDLK SN+ ++ LK+ DFGLAR + Y V T WYR+PE++L
Sbjct: 135 HSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWM 191
Query: 543 EYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFS------- 595
Y+ +D+WSVGCI AE L + LF G ++QL RI +GTP+E++ S
Sbjct: 192 HYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNY 251
Query: 596 --KLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDY 653
LP + K F E +G+ L DLL K L DP RITA EAL H Y
Sbjct: 252 IQSLPQMPKKDFKEV---------FSGA--NPLAIDLLEKMLVLDPDKRITAAEALAHPY 300
Query: 654 FSESPLPID 662
+E P D
Sbjct: 301 LAEYHDPED 309
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 167 bits (425), Expect = 2e-46
Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 15/232 (6%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKM----EKEKEGFPITSLREINTLLKAQHPNIVT 425
I +G++G VY + K ++ LK + + EKE+E +L E+ L K HPNI+
Sbjct: 8 IGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKERE----DALNEVKILKKLNHPNIIK 63
Query: 426 VREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHD 484
E K+ IVM+Y + D+ ++ + + + F ++ QL A+ +LH
Sbjct: 64 YYESFEEK--GKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS 121
Query: 485 NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEY 544
ILHRD+K N+ L+ G++K+GDFG+++ S + +V T +Y SPEL K Y
Sbjct: 122 RKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQN-KPY 180
Query: 545 STPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSK 596
+ D+WS+GC+ E ++ F G++ L +L K + I +S
Sbjct: 181 NYKSDIWSLGCVLYELCTLKHPFEGEN-LLEL--ALKILKGQYPPIPSQYSS 229
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 170 bits (433), Expect = 2e-46
Identities = 101/307 (32%), Positives = 154/307 (50%), Gaps = 41/307 (13%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITS----LREINTLLKAQHPNIVTVRE 428
G +GVV+ D R + VALK KM + + S RE+ L +H N+++ +
Sbjct: 11 GAFGVVWSVTDPRDGKRVALK--KMPNVFQN--LVSCKRVFRELKMLCFFKHDNVLSALD 66
Query: 429 IVVGSNMD---KIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
I+ ++D +I++V + ++ D+ ++ Q VK + Q+L + +LH
Sbjct: 67 ILQPPHIDPFEEIYVVTELMQSDLHKII----VSPQPLSSDHVKVFLYQILRGLKYLHSA 122
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAR-EYGSPLKHYTPIVVTLWYRSPELLLGCKEY 544
ILHRD+K NLL++ +LK+ DFGLAR E KH T VVT +YR+PE+L+G + Y
Sbjct: 123 GILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHY 182
Query: 545 STPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPN------------EKIWP 592
++ +D+WSVGCIFAE L LF +S ++QL I +GTP+ I
Sbjct: 183 TSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILR 242
Query: 593 GFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHD 652
G K P++ + T LLC+ L +DP RI+A +AL H
Sbjct: 243 GPHKPPSLPVLYTLSSQA-------------THEAVHLLCRMLVFDPDKRISAADALAHP 289
Query: 653 YFSESPL 659
Y E L
Sbjct: 290 YLDEGRL 296
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 164 bits (417), Expect = 1e-44
Identities = 103/306 (33%), Positives = 163/306 (53%), Gaps = 28/306 (9%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+ ++ L ++ G YG V A D+RT VA+K+L + E F + RE+ L +H
Sbjct: 15 DRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHE 74
Query: 422 NIVTVREIVVG-SNMDKI---FIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
N++ + ++ ++D+ ++VM ++ D+ LM+ + + ++ L+ Q+L
Sbjct: 75 NVIGLLDVFTPDLSLDRFHDFYLVMPFMGTDLGKLMKHEKLSED-----RIQFLVYQMLK 129
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
+ ++H I+HRDLK NL ++ LK+ DFGLAR+ S + Y VVT WYR+PE+
Sbjct: 130 GLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGY---VVTRWYRAPEV 186
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKL 597
+L Y+ +D+WSVGCI AE L +PLF G L+QL I K GTP+++
Sbjct: 187 ILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEF------- 239
Query: 598 PAVQKMTFAEYPN----VGGLKTKVAGSILTE---LGYDLLCKFLTYDPVTRITADEALR 650
VQK+ + N + + K S+L L ++L K L D +RITA EAL
Sbjct: 240 --VQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA 297
Query: 651 HDYFSE 656
H YF E
Sbjct: 298 HPYFEE 303
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 163 bits (414), Expect = 3e-44
Identities = 106/309 (34%), Positives = 157/309 (50%), Gaps = 35/309 (11%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E + L ++ G YG V A DKRT E VA+K+L + E F + RE+ L QH
Sbjct: 15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHE 74
Query: 422 NIVTVREI----VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
N++ + ++ V G ++VM Y++ D++ +M S+ +V + L+ Q+L
Sbjct: 75 NVIGLLDVFTSAVSGDEFQDFYLVMPYMQTDLQKIMGHPLSEDKV------QYLVYQMLC 128
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
+ ++H I+HRDLK NL ++ LK+ DFGLAR + + Y VVT WYR+PE+
Sbjct: 129 GLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGY---VVTRWYRAPEV 185
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP--------NEK 589
+L Y+ +D+WSVGCI AE L + LF GK L+QL++I K G P +K
Sbjct: 186 ILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDK 245
Query: 590 IWPGFSK-LPAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADE 647
+ K LP + F+ +P + DLL K L D R+TA E
Sbjct: 246 AAKSYIKSLPKYPRKDFSTLFPKA------------SPQAVDLLEKMLELDVDKRLTATE 293
Query: 648 ALRHDYFSE 656
AL H YF
Sbjct: 294 ALEHPYFDS 302
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 158 bits (401), Expect = 2e-43
Identities = 92/298 (30%), Positives = 149/298 (50%), Gaps = 52/298 (17%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPN 422
F+ L +I +G +G VY+A+ KRT + VA+K +K+E +++ I + EI L K +HPN
Sbjct: 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKI--INEIQILKKCKHPN 58
Query: 423 IVTVREIVVGSNM--DKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
IV GS + D+++IVM++ SL + ++S Q ++ + ++LL +
Sbjct: 59 IVKYY----GSYLKKDELWIVMEFC--SGGSLKDLLKSTNQTLTESQIAYVCKELLKGLE 112
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLG 540
+LH N I+HRD+K +N+LL+ G +K+ DFGL+ + S K +V T ++ +PE++ G
Sbjct: 113 YLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQ-LSDTKARNTMVGTPYWMAPEVING 171
Query: 541 CKEYSTPIDMWSVGCIFAEFLCMEPLFTGK---SDLEQLSRIFKTM--GTPNEKIWPGFS 595
K Y D+WS+G E L GK S+L + +FK G P
Sbjct: 172 -KPYDYKADIWSLGITAIE------LAEGKPPYSELPPMKALFKIATNGPP--------- 215
Query: 596 KLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDY 653
GL+ S E D L K L +P R TA++ L+H +
Sbjct: 216 -----------------GLRNPEKWS--DEF-KDFLKKCLQKNPEKRPTAEQLLKHPF 253
Score = 36.8 bits (86), Expect = 0.040
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 754 EFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
F+ L +I +G +G VY+A+ KRT + VA
Sbjct: 1 LFEILEKIGKGGFGEVYKARHKRTGKEVA 29
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 158 bits (401), Expect = 2e-42
Identities = 106/313 (33%), Positives = 153/313 (48%), Gaps = 43/313 (13%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
+K I +G+YGVV A D T E VA+K++ E LREI L +HP+I
Sbjct: 2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDI 61
Query: 424 VTVREIVVGSN---MDKIFIVMDYVEHDMKSLMET----MRSKKQVFIPGEVKCLMQQLL 476
V ++ I++ + I++V + +E D+ +++ Q F + QLL
Sbjct: 62 VEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFF--------LYQLL 113
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY---GSPLKHYTPIVVTLWYR 533
A+ ++H + HRDLK N+L + LK+ DFGLAR +T V T WYR
Sbjct: 114 RALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYR 173
Query: 534 SPELLLGC--KEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP----- 586
+PEL G +Y+ ID+WS+GCIFAE L +PLF GK+ + QL I +GTP
Sbjct: 174 APELC-GSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETI 232
Query: 587 ----NEKIWPGFSKLPAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVT 641
NEK S + Q + F++ +PN L LL + L +DP
Sbjct: 233 SRVRNEKARRYLSSMRKKQPVPFSQKFPNA------------DPLALRLLERLLAFDPKD 280
Query: 642 RITADEALRHDYF 654
R TA+EAL YF
Sbjct: 281 RPTAEEALADPYF 293
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 153 bits (389), Expect = 5e-41
Identities = 95/306 (31%), Positives = 154/306 (50%), Gaps = 31/306 (10%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
L + G +G+V A+D+ T + VA+K++ + RE+ L +H NI+++
Sbjct: 15 LQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISL 74
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNW 486
+I + S ++ I+ V + + D+ L+ + +KQ ++ + Q+L + ++H
Sbjct: 75 SDIFI-SPLEDIYFVTELLGTDLHRLLTSRPLEKQF-----IQYFLYQILRGLKYVHSAG 128
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
++HRDLK SN+L++ LK+ DFGLAR T V T +YR+PE++L ++Y
Sbjct: 129 VVHRDLKPSNILINENCDLKICDFGLARIQDP---QMTGYVSTRYYRAPEIMLTWQKYDV 185
Query: 547 PIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFS---------KL 597
+D+WS GCIFAE L +PLF GK + Q S I +GTP + + L
Sbjct: 186 EVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSL 245
Query: 598 PAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSE 656
P + + F+E + N DLL K L +DP RI+A EAL H Y +
Sbjct: 246 PKREPVPFSEKFKNA------------DPSAIDLLEKMLVFDPQKRISAAEALAHPYLAP 293
Query: 657 SPLPID 662
P D
Sbjct: 294 YHDPTD 299
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 152 bits (385), Expect = 3e-40
Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 42/315 (13%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEG-FPITSLREINTLLKAQHP 421
++ L ++ EG++G VY A+D++ +VALK L + E + LREI L HP
Sbjct: 1 SYRILRKLGEGSFGEVYLARDRK---LVALKVLAKKLESKSKEVERFLREIQILASLNHP 57
Query: 422 -NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
NIV + + +++VM+YV+ + +K E ++ Q+L+A+
Sbjct: 58 PNIVKLYDFFQDEG--SLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALE 115
Query: 481 HLHDNWILHRDLKTSNLLLSHRG-ILKVGDFGLAREYGSPLKH------YTPIVVTLWYR 533
+LH I+HRD+K N+LL G ++K+ DFGLA+ P + V T Y
Sbjct: 116 YLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYM 175
Query: 534 SPELLLGCKE--YSTPIDMWSVGCIFAEFLCMEPLF---TGKSDLEQLSRIFKTMGTPNE 588
+PE+LLG S+ D+WS+G E L P F S Q +I + TP+
Sbjct: 176 APEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPS- 234
Query: 589 KIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEA 648
+ P+ L +K A DLL K L DP R+++
Sbjct: 235 --------------LASPLSPSNPELISKAA--------SDLLKKLLAKDPKNRLSSSSD 272
Query: 649 LRHDYFSESPLPIDP 663
L HD + L
Sbjct: 273 LSHDLLAHLKLKESD 287
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 146 bits (370), Expect = 4e-39
Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 50/298 (16%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSL-REINTLLKAQHP 421
E+ + G++G VY A DK T E++A+K +++ + E + +L REI L QHP
Sbjct: 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEE-LEALEREIRILSSLQHP 59
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
NIV + + I ++YV SL ++ K ++ +Q+L +A+
Sbjct: 60 NIVRYYGSERDEEKNTLNIFLEYV--SGGSL-SSLLKKFGKLPEPVIRKYTRQILEGLAY 116
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHY--TPIVVTLWYRSPELLL 539
LH N I+HRD+K +N+L+ G++K+ DFG A+ G + T ++ +PE++
Sbjct: 117 LHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIR 176
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPA 599
G +EY D+WS+GC E + TGK W A
Sbjct: 177 G-EEYGRAADIWSLGCTVIE------MATGK------------------PPWSELGNPMA 211
Query: 600 VQKMTFAEYPNVGGLKTKVAGSI------LTELGYDLLCKFLTYDPVTRITADEALRH 651
K +G L+E D L K L DP R TADE L+H
Sbjct: 212 A------------LYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQH 257
Score = 31.8 bits (73), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 754 EFKCLNRIEEGTYGVVYRAKDKRTDEIVAPCKS 786
E+ + G++G VY A DK T E++A KS
Sbjct: 1 EWTRGELLGRGSFGSVYLALDKDTGELMA-VKS 32
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 145 bits (367), Expect = 5e-38
Identities = 98/305 (32%), Positives = 157/305 (51%), Gaps = 14/305 (4%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E ++ L + G YG V A D R + VA+K+L + + RE+ L +H
Sbjct: 15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHE 74
Query: 422 NIVTVREIVV----GSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
N++ + ++ N +++++V + + D+ +++ K Q V+ L+ QLL
Sbjct: 75 NVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIV-----KCQKLSDEHVQFLIYQLLR 129
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
+ ++H I+HRDLK SN+ ++ L++ DFGLAR+ + Y V T WYR+PE+
Sbjct: 130 GLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGY---VATRWYRAPEI 186
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKL 597
+L Y+ +D+WSVGCI AE L + LF G ++QL RI + +GTP+ ++ S
Sbjct: 187 MLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSE 246
Query: 598 PAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSES 657
A + + + LK G+ L DLL K L D RI+A EAL H YFS+
Sbjct: 247 HARKYIQSLPHMPQQDLKKIFRGA--NPLAIDLLEKMLVLDSDKRISASEALAHPYFSQY 304
Query: 658 PLPID 662
P D
Sbjct: 305 HDPED 309
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 143 bits (362), Expect = 3e-37
Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 44/312 (14%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
L I G G+V A D T + VA+K+L + + RE+ + H NI+ +
Sbjct: 21 LKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGL 80
Query: 427 REIVVG----SNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
+ +++VM+ ++ ++ +++ +++ L+ Q+L + HL
Sbjct: 81 LNVFTPQKSLEEFQDVYLVMELMDANLCQVIQMDLDHERM------SYLLYQMLCGIKHL 134
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCK 542
H I+HRDLK SN+++ LK+ DFGLAR G+ TP VVT +YR+PE++LG
Sbjct: 135 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM-MTPYVVTRYYRAPEVILGMG 193
Query: 543 EYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKL----- 597
Y +D+WSVGCI E + LF G ++Q ++I + +GTP+++ S+L
Sbjct: 194 -YKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEF---MSRLQPTVR 249
Query: 598 ------PAVQKMTF----------AEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVT 641
P +F + + LK A DLL K L DP
Sbjct: 250 NYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQA--------RDLLSKMLVIDPEK 301
Query: 642 RITADEALRHDY 653
RI+ D+AL+H Y
Sbjct: 302 RISVDDALQHPY 313
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 140 bits (355), Expect = 2e-36
Identities = 100/310 (32%), Positives = 150/310 (48%), Gaps = 24/310 (7%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E ++ L+ + G YG V A D +T VA+K+L + + RE+ L +H
Sbjct: 17 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 76
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
N++ + ++ + + F + V H M + + + K Q V+ L+ Q+L + +
Sbjct: 77 NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNI-VKCQKLTDDHVQFLIYQILRGLKY 135
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGC 541
+H I+HRDLK SNL ++ LK+ DFGLAR + Y V T WYR+PE++L
Sbjct: 136 IHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNW 192
Query: 542 KEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFS------ 595
Y+ +D+WSVGCI AE L LF G ++QL I + +GTP ++ S
Sbjct: 193 MHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARN 252
Query: 596 ---KLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHD 652
L + KM FA +G L DLL K L D RITA +AL H
Sbjct: 253 YIQSLTQMPKMNFANV-FIGA----------NPLAVDLLEKMLVLDSDKRITAAQALAHA 301
Query: 653 YFSESPLPID 662
YF++ P D
Sbjct: 302 YFAQYHDPDD 311
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 136 bits (345), Expect = 7e-36
Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 17/228 (7%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL---KM-EKEKEGFPITSLREINTLLKA 418
+++ L I +G++G V + + K +I+ K + M EKEK+ + S E+N L +
Sbjct: 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQ--QLVS--EVNILREL 56
Query: 419 QHPNIVT-VREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
+HPNIV I+ SN ++IVM+Y E D+ L++ + +++ + ++ QLL
Sbjct: 57 KHPNIVRYYDRIIDRSN-QTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLL 115
Query: 477 NAVAHLH-----DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLW 531
A+ H N +LHRDLK +N+ L +K+GDFGLA+ G V T +
Sbjct: 116 LALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPY 175
Query: 532 YRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
Y SPE L Y D+WS+GC+ E + P FT ++ L+ S+I
Sbjct: 176 YMSPEQLNH-MSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKI 222
Score = 29.5 bits (67), Expect = 7.4
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 754 EFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+++ L I +G++G V + + K +I+
Sbjct: 1 DYEVLETIGKGSFGTVRKVRRKSDGKILV 29
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 138 bits (348), Expect = 9e-35
Identities = 107/378 (28%), Positives = 177/378 (46%), Gaps = 41/378 (10%)
Query: 292 DEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEKDTLPPY 351
DE+ N E + + K + D +E ER + + D+D + I+ + + P
Sbjct: 7 DEDINIYEEKNHKANKGGSGKFEMNDKKLDEEERSHNNNAGEDEDEEKMIDNDINRSPN- 65
Query: 352 LPAIQGCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLRE 411
+ +K N I G++GVVY A T E VA+K++ + P RE
Sbjct: 66 ----------KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD------PQYKNRE 109
Query: 412 INTLLKAQHPNIVTVREI----VVGSNMDKIF--IVMDYVEHDMKSLMETMRSKKQVFIP 465
+ + H NI+ +++ N IF +VM+++ + M+
Sbjct: 110 LLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPL 169
Query: 466 GEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRG-ILKVGDFGLAREYGSPLKHYT 524
VK QL A+A++H +I HRDLK NLL+ LK+ DFG A+ + + +
Sbjct: 170 FLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVS 229
Query: 525 PIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMG 584
I + +YR+PEL+LG Y+T ID+WS+GCI AE + P+F+G+S ++QL RI + +G
Sbjct: 230 YIC-SRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLG 288
Query: 585 TPNEK----IWPGFS--KLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYD 638
TP E + P ++ K P V+ KV + + + +FL Y+
Sbjct: 289 TPTEDQLKEMNPNYADIKFPDVKPKDL----------KKVFPKGTPDDAINFISQFLKYE 338
Query: 639 PVTRITADEALRHDYFSE 656
P+ R+ EAL +F +
Sbjct: 339 PLKRLNPIEALADPFFDD 356
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 132 bits (333), Expect = 2e-33
Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 21/308 (6%)
Query: 361 VEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQH 420
++ ++ L I G G+V A D D VA+K+L + + + RE+ + H
Sbjct: 16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNH 75
Query: 421 PNIVTVREIVVGSN----MDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
NI+++ + +++VM+ ++ ++ +++ +++ L+ Q+L
Sbjct: 76 KNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQMELDHERM------SYLLYQML 129
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
+ HLH I+HRDLK SN+++ LK+ DFGLAR G+ TP VVT +YR+PE
Sbjct: 130 CGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM-MTPYVVTRYYRAPE 188
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP----NEKIWP 592
++LG Y +D+WSVGCI E + + LF G+ ++Q +++ + +GTP +K+ P
Sbjct: 189 VILGMG-YKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQP 247
Query: 593 GFSKL----PAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADE 647
P +TF + +P+ + DLL K L DP RI+ DE
Sbjct: 248 TVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDE 307
Query: 648 ALRHDYFS 655
AL+H Y +
Sbjct: 308 ALQHPYIN 315
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 127 bits (322), Expect = 7e-33
Identities = 76/298 (25%), Positives = 125/298 (41%), Gaps = 67/298 (22%)
Query: 373 GTYGVVYRAKDKRTDEIVALK-----RLKMEKEKEGFPITSLREINTLLKAQHPNIVTVR 427
G++G V + K T ++ A+K ++ KE E +L E N L + HP IV
Sbjct: 4 GSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVE----HTLTERNILSRINHPFIV--- 56
Query: 428 EIVVGSNM-------DKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
+ +K+++V++Y ++ S + SK+ F + +++ A+
Sbjct: 57 ------KLHYAFQTEEKLYLVLEYAPGGELFSHL----SKEGRFSEERARFYAAEIVLAL 106
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+LH I++RDLK N+LL G +K+ DFGLA+E S T Y +PE+LL
Sbjct: 107 EYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLL 166
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPA 599
G K Y +D WS+G + E L +P F D +++
Sbjct: 167 G-KGYGKAVDWWSLGVLLYEMLTGKPPFYA-EDRKEIYEKILKD---------------- 208
Query: 600 VQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRIT---ADEALRHDYF 654
+ F E+ L+ DL+ L DP R+ A+E H +F
Sbjct: 209 --PLRFPEF--------------LSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF 250
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 129 bits (325), Expect = 3e-32
Identities = 93/324 (28%), Positives = 156/324 (48%), Gaps = 29/324 (8%)
Query: 361 VEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQH 420
++ ++ L I G G+V A D + VA+K+L + + + RE+ + H
Sbjct: 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNH 82
Query: 421 PNIVTVREIVVGSN----MDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
NI+ + + ++IVM+ ++ ++ +++ +++ L+ Q+L
Sbjct: 83 KNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERM------SYLLYQML 136
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
+ HLH I+HRDLK SN+++ LK+ DFGLAR G+ TP VVT +YR+PE
Sbjct: 137 CGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM-MTPYVVTRYYRAPE 195
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP----NEKIWP 592
++LG Y +D+WSVGCI E + LF G ++Q +++ + +GTP +K+ P
Sbjct: 196 VILGMG-YKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQP 254
Query: 593 G----FSKLPAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADE 647
P +F + +P+V + DLL K L D RI+ DE
Sbjct: 255 TVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDE 314
Query: 648 ALRHDYF--------SESPLPIDP 663
AL+H Y +E+P P P
Sbjct: 315 ALQHPYINVWYDPSEAEAPPPKIP 338
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 128 bits (323), Expect = 4e-32
Identities = 88/308 (28%), Positives = 149/308 (48%), Gaps = 21/308 (6%)
Query: 361 VEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQH 420
++ ++ L I G G+V A D VA+K+L + + + RE+ L H
Sbjct: 20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNH 79
Query: 421 PNIVTVREIVVGSN----MDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
NI+++ + +++VM+ ++ ++ ++ +++ L+ Q+L
Sbjct: 80 KNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHMELDHERM------SYLLYQML 133
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
+ HLH I+HRDLK SN+++ LK+ DFGLAR + TP VVT +YR+PE
Sbjct: 134 CGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFM-MTPYVVTRYYRAPE 192
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSK 596
++LG Y +D+WSVGCI E + +F G ++Q +++ + +GTP+ +
Sbjct: 193 VILGMG-YKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQP 251
Query: 597 L--------PAVQKMTFAE-YPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADE 647
P ++F E +P+ + T DLL K L DP RI+ DE
Sbjct: 252 TVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDE 311
Query: 648 ALRHDYFS 655
ALRH Y +
Sbjct: 312 ALRHPYIT 319
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 125 bits (315), Expect = 8e-32
Identities = 92/301 (30%), Positives = 139/301 (46%), Gaps = 53/301 (17%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRL-KMEKEKEGFPITSLREINTLLKAQHPNIVTVRE 428
I +G YG V+ AK K T +I A+K + K + ++ L E + L +AQ P +V +
Sbjct: 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYY 60
Query: 429 IVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWI 487
G +++VM+Y+ D+ SL+E + S + + +++ A+ +LH N I
Sbjct: 61 SFQGKK--NLYLVMEYLPGGDLASLLENVGS----LDEDVARIYIAEIVLALEYLHSNGI 114
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLARE--------YGSPLKHYTPIVVTLWYRSPELLL 539
+HRDLK N+L+ G LK+ DFGL++ K IV T Y +PE++L
Sbjct: 115 IHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVIL 174
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKI-WPGFSKLP 598
G + +S +D WS+GCI EFL P F G++ E IF N KI WP
Sbjct: 175 G-QGHSKTVDWWSLGCILYEFLVGIPPFHGETPEE----IF--QNILNGKIEWP------ 221
Query: 599 AVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITA---DEALRHDYFS 655
E V + A DL+ K L DP R+ A +E H +F
Sbjct: 222 --------EDVEV----SDEA--------IDLISKLLVPDPEKRLGAKSIEEIKNHPFFK 261
Query: 656 E 656
Sbjct: 262 G 262
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 124 bits (312), Expect = 1e-31
Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 14/220 (6%)
Query: 372 EGTYG--VVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREI 429
+G +G +YR + D +V K + + + E +L EI L QHPNI+
Sbjct: 10 KGAFGEATLYRRTED--DSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAY--- 64
Query: 430 VVGSNMDK--IFIVMDYVEHDMKSLMETM-RSKKQVFIPGEVKCLMQQLLNAVAHLHDNW 486
MD + I M+Y + +L + + R K Q+F V + Q+++AV+++H
Sbjct: 65 -YNHFMDDNTLLIEMEYA--NGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAG 121
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
ILHRD+KT N+ L+ G++K+GDFG+++ GS +V T +Y SPEL G +Y+
Sbjct: 122 ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQG-VKYNF 180
Query: 547 PIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP 586
D+W++GC+ E L ++ F + L + +I + TP
Sbjct: 181 KSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTP 220
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 125 bits (315), Expect = 2e-31
Identities = 80/306 (26%), Positives = 138/306 (45%), Gaps = 51/306 (16%)
Query: 356 QGCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTL 415
+G E +K L +I EG G VY+A D+ T + VA+K++++ K+ + I EI +
Sbjct: 14 EGDPR-ELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIIN---EILIM 69
Query: 416 LKAQHPNIVTVREIVVGS--NMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ 473
+HPNIV S D++++VM+Y+ D SL + + ++ + +
Sbjct: 70 KDCKHPNIVDY----YDSYLVGDELWVVMEYM--DGGSLTDIITQNFVRMNEPQIAYVCR 123
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYR 533
++L + +LH ++HRD+K+ N+LLS G +K+ DFG A + +V T ++
Sbjct: 124 EVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWM 183
Query: 534 SPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPG 593
+PE++ K+Y +D+WS+G + E EP + + L L I T G P
Sbjct: 184 APEVIKR-KDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLI-TTKGIP------- 234
Query: 594 FSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKF----LTYDPVTRITADEAL 649
L +K + F L DP R +A+E L
Sbjct: 235 --PLKNPEKWS------------------------PEFKDFLNKCLVKDPEKRPSAEELL 268
Query: 650 RHDYFS 655
+H +
Sbjct: 269 QHPFLK 274
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 121 bits (305), Expect = 1e-30
Identities = 81/288 (28%), Positives = 137/288 (47%), Gaps = 44/288 (15%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREI 429
I G +GVVY+ + T + VA+K++ +EK KE + ++EI+ L +HPNIV
Sbjct: 8 IGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGS 67
Query: 430 VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILH 489
+ S D ++I+++Y E+ SL + K F V + Q+L +A+LH+ ++H
Sbjct: 68 IETS--DSLYIILEYAEN--GSL-RQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIH 122
Query: 490 RDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPID 549
RD+K +N+L + G++K+ DFG+A + K +V T ++ +PE++ ST D
Sbjct: 123 RDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEM-SGASTASD 181
Query: 550 MWSVGCIFAEFLCMEPLFTGK---SDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTFA 606
+WS+GC E L TG DL ++ +F+ + + + G S
Sbjct: 182 IWSLGCTVIE------LLTGNPPYYDLNPMAALFRIVQDDHPPLPEGISPE--------- 226
Query: 607 EYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
LK D L + DP R TA + L+H +
Sbjct: 227 -------LK-------------DFLMQCFQKDPNLRPTAKQLLKHPWI 254
Score = 30.3 bits (69), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 761 IEEGTYGVVYRAKDKRTDEIVA 782
I G +GVVY+ + T + VA
Sbjct: 8 IGRGAFGVVYKGLNLETGDFVA 29
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 119 bits (301), Expect = 5e-30
Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 10/202 (4%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+ + + + +G+ GVVY+ + K T +I ALK++ + E F LRE+ TL + P
Sbjct: 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHV-DGDEEFRKQLLRELKTLRSCESP 59
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEV-KCLMQQLLNAVA 480
+V I IV++Y+ D SL + + KK IP V + +Q+L +
Sbjct: 60 YVVKCYGAFYKEGE--ISIVLEYM--DGGSLADLL--KKVGKIPEPVLAYIARQILKGLD 113
Query: 481 HLH-DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+LH I+HRD+K SNLL++ +G +K+ DFG+++ + L V T+ Y SPE +
Sbjct: 114 YLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQ 173
Query: 540 GCKEYSTPIDMWSVGCIFAEFL 561
G + YS D+WS+G E
Sbjct: 174 G-ESYSYAADIWSLGLTLLECA 194
Score = 31.4 bits (72), Expect = 2.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+ + + + +G+ GVVY+ + K T +I A
Sbjct: 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYA 30
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 119 bits (301), Expect = 1e-29
Identities = 79/328 (24%), Positives = 123/328 (37%), Gaps = 83/328 (25%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL------KMEKEKEGFPITSLREINTL 415
++FK I EG++ V AK+K T++ A+K L K +K K E L
Sbjct: 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKY-----VKIEKEVL 55
Query: 416 LK-AQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCL-- 471
+ HP I+ + + + ++ V++Y + ++ + S + KC
Sbjct: 56 TRLNGHPGII--KLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSL-------DEKCTRF 106
Query: 472 -MQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKH------YT 524
++L A+ +LH I+HRDLK N+LL +K+ DFG A+ T
Sbjct: 107 YAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDAT 166
Query: 525 PI--------------VVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGK 570
I V T Y SPELL D+W++GCI + L +P F G
Sbjct: 167 NIDSQIEKNRRRFASFVGTAEYVSPELLNEKP-AGKSSDLWALGCIIYQMLTGKPPFRGS 225
Query: 571 SDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDL 630
++ +I K P F P + DL
Sbjct: 226 NEYLTFQKILKL----EYSFPPNFP--PDAK---------------------------DL 252
Query: 631 LCKFLTYDPVTRITA----DEALRHDYF 654
+ K L DP R+ DE H +F
Sbjct: 253 IEKLLVLDPQDRLGVNEGYDELKAHPFF 280
Score = 29.9 bits (68), Expect = 7.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
++FK I EG++ V AK+K T++ A
Sbjct: 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYA 30
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 116 bits (293), Expect = 4e-29
Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 18/239 (7%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKME----KEKEGFPITSLREINTLLKAQ 419
++ + +I EG++G +Y AK K E +K + + KEKE S +E+ L K +
Sbjct: 2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEA----SKKEVILLAKMK 57
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQV-FIPGEVKCLMQQLLNA 478
HPNIVT + ++FIVM+Y D LM+ + ++ V F ++ Q+
Sbjct: 58 HPNIVTFFASFQENG--RLFIVMEYC--DGGDLMKRINRQRGVLFSEDQILSWFVQISLG 113
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRG-ILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
+ H+HD ILHRD+K+ N+ LS G + K+GDFG+AR+ ++ V T +Y SPE+
Sbjct: 114 LKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEI 173
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSK 596
+ Y+ D+WS+GC+ E ++ F G + L QL + K I P FS+
Sbjct: 174 CQN-RPYNNKTDIWSLGCVLYELCTLKHPFEGNN-LHQL--VLKICQGYFAPISPNFSR 228
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 115 bits (291), Expect = 4e-28
Identities = 84/302 (27%), Positives = 141/302 (46%), Gaps = 43/302 (14%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQ 419
+F+ L ++ +G YG V+ AK K T EIVALKR+K + K E + + R+I L +
Sbjct: 2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDI--LTTTK 59
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
+V + + + + +++ M+YV D ++L+ + + + M ++ A
Sbjct: 60 SEWLV--KLLYAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSE----DHARFYMAEMFEA 113
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL 538
V LH+ +HRDLK N L+ G +K+ DFGL++ + + +V + Y +PE+L
Sbjct: 114 VDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGI---VTYANSVVGSPDYMAPEVL 170
Query: 539 LGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLP 598
G K Y +D WS+GC+ EFLC P F+G + E N K W + P
Sbjct: 171 RG-KGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWE---------NLKYWKETLQRP 220
Query: 599 AVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALR-HDYFSES 657
F L++ +DL+ K + DP R + E ++ H +F E
Sbjct: 221 VYDDPRFN----------------LSDEAWDLITKLIN-DPSRRFGSLEDIKNHPFFKEV 263
Query: 658 PL 659
Sbjct: 264 DW 265
Score = 34.7 bits (80), Expect = 0.23
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 754 EFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+F+ L ++ +G YG V+ AK K T EIVA
Sbjct: 2 DFQILTQVGQGGYGQVFLAKKKDTGEIVA 30
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 113 bits (284), Expect = 6e-28
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 10/200 (5%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVG 432
G +G+V+ + K ++V +K++ +E+ + + + E L HPNI+ E +
Sbjct: 11 GAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFL- 69
Query: 433 SNMDK-IFIVMDYVEHDMKSLMETMRSKKQVFIPGE-VKCLMQQLLNAVAHLHDNWILHR 490
DK + IVM+Y +L E ++ + + + + Q+L A+ H+H ILHR
Sbjct: 70 --EDKALMIVMEYAPGG--TLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHR 125
Query: 491 DLKTSNLLLS-HRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPID 549
DLKT N+LL H+ ++K+GDFG+++ S K YT +V T Y SPEL G K Y+ D
Sbjct: 126 DLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYT-VVGTPCYISPELCEG-KPYNQKSD 183
Query: 550 MWSVGCIFAEFLCMEPLFTG 569
+W++GC+ E ++ F
Sbjct: 184 IWALGCVLYELASLKRAFEA 203
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 110 bits (278), Expect = 5e-27
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 17/238 (7%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKM----EKEKEGFPITSLREINTLLKAQ 419
FK L ++ +G+YG VY+ K ++ ALK + + +KE+E ++ EI L
Sbjct: 2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKERE----DAVNEIRILASVN 57
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
HPNI++ +E + N K+ IVM+Y D+ + + K+++ E+ + QLL
Sbjct: 58 HPNIISYKEAFLDGN--KLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRG 115
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL 538
+ LH+ ILHRDLK++N+LL ++K+GD G+++ + T I T Y +PE+
Sbjct: 116 LQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMA-KTQI-GTPHYMAPEVW 173
Query: 539 LGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSK 596
G + YS D+WS+GC+ E P F +S ++ L +K I P +S+
Sbjct: 174 KG-RPYSYKSDIWSLGCLLYEMATFAPPFEARS-MQDLR--YKVQRGKYPPIPPIYSQ 227
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 110 bits (278), Expect = 6e-27
Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 56/299 (18%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
N+I GT+G VY A + T E++A+K ++++ E+ L +HPN+V
Sbjct: 5 GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKY 64
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ---QLLNAVAHLH 483
+ V + +K++I M+Y +L E + + I E + QLL +A+LH
Sbjct: 65 YGVEV--HREKVYIFMEYCSGG--TLEELLEHGR---ILDE-HVIRVYTLQLLEGLAYLH 116
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLA-------REYGSPLKHY--TPIVVTLWYRS 534
+ I+HRD+K +N+ L H G++K+GDFG A G ++ TP Y +
Sbjct: 117 SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPA-----YMA 171
Query: 535 PELLLG--CKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWP 592
PE++ G K + D+WS+GC+ E + TGK +L F+ M
Sbjct: 172 PEVITGGKGKGHGRAADIWSLGCVVLE------MATGKRPWSELDNEFQIM--------- 216
Query: 593 GFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRH 651
+ A K + L+ G D L + L DP R TA E L+H
Sbjct: 217 --FHVGAGHKPPIPDSLQ------------LSPEGKDFLDRCLESDPKKRPTASELLQH 261
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 109 bits (276), Expect = 1e-26
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 35/209 (16%)
Query: 368 NRIEEGTYGVVYRAKDKR---TDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQHP 421
++ EG +G VY+ K K VA+K LK E+E++ F L+E + K HP
Sbjct: 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDF----LKEARVMKKLGHP 56
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCL-MQQLL---- 476
N+V + + + +++V++Y+E L++ +R + VF E L ++ LL
Sbjct: 57 NVVRLLGVCTEE--EPLYLVLEYMEG--GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAI 112
Query: 477 ---NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT-------PI 526
+ +L +HRDL N L+ ++K+ DFGL+R +Y PI
Sbjct: 113 QIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSR-DVYDDDYYRKKTGGKLPI 171
Query: 527 VVTLWYRSPELLLGCKEYSTPIDMWSVGC 555
W +PE L +++ D+WS G
Sbjct: 172 ---RWM-APESLKD-GIFTSKSDVWSFGV 195
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 109 bits (275), Expect = 1e-26
Identities = 56/196 (28%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSL-REINTLLKAQH 420
E F L ++ EG+YG VY+A K T ++VA+K + +E++ + + +EI+ L +
Sbjct: 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-----LQEIIKEISILKQCDS 57
Query: 421 PNIVTVREIVVGSNM--DKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
P IV GS ++IVM+Y S+ + M+ + E+ ++ Q L
Sbjct: 58 PYIVKY----YGSYFKNTDLWIVMEYC--GAGSVSDIMKITNKTLTEEEIAAILYQTLKG 111
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL 538
+ +LH N +HRD+K N+LL+ G K+ DFG++ + + ++ T ++ +PE++
Sbjct: 112 LEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVI 171
Query: 539 LGCKEYSTPIDMWSVG 554
Y+ D+WS+G
Sbjct: 172 QEIG-YNNKADIWSLG 186
Score = 30.7 bits (70), Expect = 3.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
E F L ++ EG+YG VY+A K T ++VA
Sbjct: 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVA 32
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 109 bits (275), Expect = 1e-26
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 35/228 (15%)
Query: 372 EGTYGVVYRAK----DKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQHPNIV 424
EG +G VY+ + T+ VA+K LK E+E+E F L E + + K HPNIV
Sbjct: 9 EGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEF----LEEASIMKKLSHPNIV 64
Query: 425 TVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
+ + + ++IV +Y+ D+ + R + ++ + Q+ + +L
Sbjct: 65 RLLGVCTQG--EPLYIVTEYMPGGDLLDFL---RKHGEKLTLKDLLQMALQIAKGMEYLE 119
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAR------EYGSPLKHYTPIVVTLWYRSPEL 537
+HRDL N L++ ++K+ DFGL+R Y PI W +PE
Sbjct: 120 SKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPI---KWM-APES 175
Query: 538 LLGCKEYSTPIDMWSVGC----IFAEFLCMEPLFTGKSDLEQLSRIFK 581
L K +++ D+WS G IF L +P + G S+ E L +
Sbjct: 176 LKDGK-FTSKSDVWSFGVLLWEIFT--LGEQP-YPGMSNEEVLELLED 219
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 107 bits (270), Expect = 7e-26
Identities = 59/212 (27%), Positives = 112/212 (52%), Gaps = 13/212 (6%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKM-----EKEKEGFPITSLREINTLLKA 418
FK +I +G + VVY+A +VALK++++ K ++ L+EI+ L +
Sbjct: 4 FKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQ----DCLKEIDLLKQL 59
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
HPN++ + +N + IV++ + D+ +++ + +K++ + QL +
Sbjct: 60 DHPNVIKYLASFIENNE--LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCS 117
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
A+ H+H I+HRD+K +N+ ++ G++K+GD GL R + S +V T +Y SPE
Sbjct: 118 ALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPER 177
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTG 569
+ Y+ D+WS+GC+ E ++ F G
Sbjct: 178 IHE-NGYNFKSDIWSLGCLLYEMAALQSPFYG 208
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 107 bits (270), Expect = 7e-26
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 365 KCLNRIEEGTYGVVYRAK----DKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLK 417
++ EG +G VY+ + VA+K LK E++ E F LRE + K
Sbjct: 2 TLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEF----LREARIMRK 57
Query: 418 AQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLM-QQL 475
HPNIV + + V + + + IVM+Y+ D+ + R + + Q+
Sbjct: 58 LDHPNIV--KLLGVCTEEEPLMIVMEYMPGGDLLDYL---RKNRPKELSLSDLLSFALQI 112
Query: 476 LNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTL---WY 532
+ +L +HRDL N L+ ++K+ DFGL+R+ +Y L W
Sbjct: 113 ARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRD-LYDDDYYKVKGGKLPIRWM 171
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFT 568
+PE L K +++ D+WS G L E +FT
Sbjct: 172 -APESLKEGK-FTSKSDVWSFGV-----LLWE-IFT 199
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 107 bits (270), Expect = 8e-26
Identities = 63/202 (31%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E+++ + RI GTYG VY+A+D T E+VA+K +K+E + F I +EI+ L + +HP
Sbjct: 3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLE-PGDDFEIIQ-QEISMLKECRHP 60
Query: 422 NIVTVREIVVGS--NMDKIFIVMDYVE----HDMKSLMETMRSKKQV-FIPGEVKCLMQQ 474
NIV GS DK++IVM+Y D+ + S+ Q+ ++ C ++
Sbjct: 61 NIVA----YFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYV-----C--RE 109
Query: 475 LLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRS 534
L +A+LH+ +HRD+K +N+LL+ G +K+ DFG++ + + + + T ++ +
Sbjct: 110 TLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMA 169
Query: 535 PELLLGCKE--YSTPIDMWSVG 554
PE+ ++ Y D+W++G
Sbjct: 170 PEVAAVERKGGYDGKCDIWALG 191
Score = 43.1 bits (102), Expect = 3e-04
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
E+++ + RI GTYG VY+A+D T E+VA
Sbjct: 3 EDYELIQRIGSGTYGDVYKARDIATGELVA 32
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 107 bits (268), Expect = 1e-25
Identities = 79/302 (26%), Positives = 132/302 (43%), Gaps = 74/302 (24%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKM--EKEKEGFPITSL-REINTLLKAQHPNIV-- 424
+ G++G VY + + A+K + + + + + L +EI L K QHPNIV
Sbjct: 8 LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67
Query: 425 --TVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
T RE D ++I ++ V SL + ++ K F ++ +Q+L + +L
Sbjct: 68 LGTERE------EDNLYIFLELVP--GGSLAKLLK-KYGSFPEPVIRLYTRQILLGLEYL 118
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY----------GSPLKHYTPIVVTLWY 532
HD +HRD+K +N+L+ G++K+ DFG+A++ GSP ++
Sbjct: 119 HDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSP-----------YW 167
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGK---SDLEQLSRIFKTMGTPNEK 589
+PE++ Y D+WS+GC E + TGK S LE ++ +FK +
Sbjct: 168 MAPEVIAQQGGYGLAADIWSLGCTVLE------MATGKPPWSQLEGVAAVFKIGRSKE-- 219
Query: 590 IWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEAL 649
LP + P+ L++ D + K L DP R TA E L
Sbjct: 220 -------LPPI--------PDH-----------LSDEAKDFILKCLQRDPSLRPTAAELL 253
Query: 650 RH 651
H
Sbjct: 254 EH 255
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 106 bits (268), Expect = 1e-25
Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 45/223 (20%)
Query: 365 KCLNRIEEGTYGVVYRAK----DKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLK 417
++ EG +G VY+ K + VA+K LK E++ E F LRE + K
Sbjct: 2 TLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEF----LREARIMRK 57
Query: 418 AQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
HPN+V + + V + + ++IVM+Y+E D+ S + R + ++ Q+
Sbjct: 58 LDHPNVV--KLLGVCTEEEPLYIVMEYMEGGDLLSYL---RKNRPKLSLSDLLSFALQIA 112
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGS-----------PLKHYTP 525
+ +L +HRDL N L+ ++K+ DFGL+R+ P++
Sbjct: 113 RGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIR---- 168
Query: 526 IVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFT 568
W +PE L K +++ D+WS G L E +FT
Sbjct: 169 -----WM-APESLKEGK-FTSKSDVWSFGV-----LLWE-IFT 198
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 106 bits (265), Expect = 2e-25
Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 7/210 (3%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPN 422
++ L + EG++G + +D+ A+K +++ K S +E L K +HPN
Sbjct: 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVE-DSRKEAVLLAKMKHPN 59
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKK-QVFIPGEVKCLMQQLLNAVAH 481
IV +E ++IVM+Y D LM+ ++ ++ ++F + Q+ V H
Sbjct: 60 IVAFKESFEADG--HLYIVMEYC--DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQH 115
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGC 541
+H+ +LHRD+K+ N+ L+ G +K+GDFG AR SP + V T +Y PE+
Sbjct: 116 IHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENM 175
Query: 542 KEYSTPIDMWSVGCIFAEFLCMEPLFTGKS 571
Y+ D+WS+GCI E ++ F S
Sbjct: 176 P-YNNKSDIWSLGCILYELCTLKHPFQANS 204
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 105 bits (263), Expect = 4e-25
Identities = 78/294 (26%), Positives = 123/294 (41%), Gaps = 44/294 (14%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
L I +G +G VY AK + T + A+K LK +T+++ ++ Q +
Sbjct: 1 LKPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVA 60
Query: 427 REIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGE-VKCLMQQLLNAVAHLHD 484
+ + D +++VM+Y+ D SL++T+ +P + K + +++ V LH
Sbjct: 61 KLYYSFQSKDYLYLVMEYLNGGDCASLIKTLG-----GLPEDWAKQYIAEVVLGVEDLHQ 115
Query: 485 NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEY 544
I+HRD+K NLL+ G LK+ DFGL+R K V T Y +PE +LG
Sbjct: 116 RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKK----FVGTPDYLAPETILG-VGD 170
Query: 545 STPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMT 604
D WS+GC+ EFL P F ++ I WP K
Sbjct: 171 DKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILS-----RRINWPEEVK-------E 218
Query: 605 FAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITAD---EALRHDYFS 655
F + A DL+ + L DP R+ A+ E H +F
Sbjct: 219 FC---------SPEA--------VDLINRLLCMDPAKRLGANGYQEIKSHPFFK 255
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 105 bits (263), Expect = 7e-25
Identities = 60/201 (29%), Positives = 110/201 (54%), Gaps = 25/201 (12%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLR-EINTLLK-AQHPNIVTV- 426
I EGTYG VY+A+ K+T ++VA+K + + +++E ++ E N L K + HPNI T
Sbjct: 14 IGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEE----EEIKEEYNILRKYSNHPNIATFY 69
Query: 427 ---REIVVGSNMDKIFIVMDYVEH----DM-KSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
+ N D++++VM+ D+ K L + + K+ +I ++++ L
Sbjct: 70 GAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWI----AYILRETLRG 125
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL 538
+A+LH+N ++HRD+K N+LL+ +K+ DFG++ + S L + T ++ +PE++
Sbjct: 126 LAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVI 185
Query: 539 LGCKEYSTP-----IDMWSVG 554
C E D+WS+G
Sbjct: 186 A-CDEQPDASYDARSDVWSLG 205
Score = 35.7 bits (83), Expect = 0.084
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 761 IEEGTYGVVYRAKDKRTDEIVA 782
I EGTYG VY+A+ K+T ++VA
Sbjct: 14 IGEGTYGKVYKARHKKTGQLVA 35
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 104 bits (260), Expect = 1e-24
Identities = 60/202 (29%), Positives = 105/202 (51%), Gaps = 6/202 (2%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
+ +I EG++G K K + +K + + K S +E+ L +HPNIV
Sbjct: 5 VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQY 64
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIP-GEVKCLMQQLLNAVAHLHDN 485
+E + ++IVMDY E L + + +++ V P ++ Q+ A+ H+HD
Sbjct: 65 QESFEENG--NLYIVMDYCEGG--DLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR 120
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYS 545
ILHRD+K+ N+ L+ G +K+GDFG+AR S ++ + T +Y SPE+ + Y+
Sbjct: 121 KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICEN-RPYN 179
Query: 546 TPIDMWSVGCIFAEFLCMEPLF 567
D+W++GC+ E ++ F
Sbjct: 180 NKSDIWALGCVLYEMCTLKHAF 201
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 103 bits (258), Expect = 3e-24
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 11/222 (4%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKE-GFPITSLREINTLLKAQHPNIVTVREIVV 431
G +G V K K + ALK +K E G E L + HP IV +
Sbjct: 4 GGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFK 63
Query: 432 GSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRD 491
I+++M+Y L +R + F + + ++ A +LH+ I++RD
Sbjct: 64 DKK--YIYMLMEYC--LGGELWTILRDRGL-FDEYTARFYIACVVLAFEYLHNRGIIYRD 118
Query: 492 LKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMW 551
LK NLLL G +K+ DFG A++ S K +T T Y +PE++L K Y +D W
Sbjct: 119 LKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWT-FCGTPEYVAPEIILN-KGYDFSVDYW 176
Query: 552 SVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKI-WP 592
S+G + E L P F D + + I+ + N K+ +P
Sbjct: 177 SLGILLYELLTGRPPFGE-DDEDPM-EIYNDILKGNGKLEFP 216
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 103 bits (258), Expect = 3e-24
Identities = 85/300 (28%), Positives = 141/300 (47%), Gaps = 53/300 (17%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKM-------EKEKEGFPITSLR-EINTLLKAQHP 421
I +GTYG VY A + T E++A+K++++ ++ + +LR EI TL H
Sbjct: 9 IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
NIV IF ++YV S+ +R+ + F V+ +Q+L +A+
Sbjct: 69 NIVQYLGFETTEEYLSIF--LEYVPGG--SIGSCLRTYGR-FEEQLVRFFTEQVLEGLAY 123
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE----YGSPLKHYTPIVVTLWYRSPEL 537
LH ILHRDLK NLL+ GI K+ DFG++++ Y + + ++++ +PE+
Sbjct: 124 LHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDN--DQNMSMQGSVFWMAPEV 181
Query: 538 L-LGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGK---SDLEQLSRIFKTMGTPNEKIWPG 593
+ + YS +D+WS+GC+ E +F G+ SD E ++ +FK +G
Sbjct: 182 IHSYSQGYSAKVDIWSLGCVVLE------MFAGRRPWSDEEAIAAMFK-LGNK------- 227
Query: 594 FSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDY 653
P + P+V + VA L C T +P R TA E L+H +
Sbjct: 228 -RSAPPIP-------PDVSMNLSPVALDFLNA------C--FTINPDNRPTARELLQHPF 271
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 102 bits (256), Expect = 6e-24
Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 40/300 (13%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
++++ + I G VVY A +E VA+KR+ +EK + +E+ + + HP
Sbjct: 1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVD-ELRKEVQAMSQCNHP 59
Query: 422 NIVTVR-EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSK--KQVFIPGEVKCLMQQLLNA 478
N+V VVG D++++VM Y+ SL++ M+S + + +++++L
Sbjct: 60 NVVKYYTSFVVG---DELWLVMPYLSGG--SLLDIMKSSYPRGGLDEAIIATVLKEVLKG 114
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFG----LAREYGSPLKHYTPIVVTLWYRS 534
+ +LH N +HRD+K N+LL G +K+ DFG LA K V T + +
Sbjct: 115 LEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMA 174
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGF 594
PE++ Y D+WS G E L TG +
Sbjct: 175 PEVMEQVHGYDFKADIWSFGITAIE------LATGA---------------------APY 207
Query: 595 SKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
SK P ++ + + L+T ++ ++ L DP R TA+E L+H +F
Sbjct: 208 SKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF 267
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 99.2 bits (248), Expect = 6e-23
Identities = 59/206 (28%), Positives = 111/206 (53%), Gaps = 12/206 (5%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSL-REINTLLKAQH 420
E F L I +G++G VY+A DKRT+++VA+K + +E+ ++ I + +EI L + +
Sbjct: 1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAED--EIEDIQQEIQFLSQCRS 58
Query: 421 PNIVTVRE-IVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
P I + GS + +I+M+Y S ++ ++ K + +++++L +
Sbjct: 59 PYITKYYGSFLKGSKL---WIIMEYC--GGGSCLDLLKPGK--LDETYIAFILREVLLGL 111
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+LH+ +HRD+K +N+LLS G +K+ DFG++ + S + V T ++ +PE++
Sbjct: 112 EYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIK 171
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEP 565
Y D+WS+G E EP
Sbjct: 172 -QSGYDEKADIWSLGITAIELAKGEP 196
Score = 38.4 bits (90), Expect = 0.013
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
E F L I +G++G VY+A DKRT+++VA
Sbjct: 1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVA 30
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 98.7 bits (246), Expect = 8e-23
Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 11/204 (5%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPN 422
+F+ LN+I +G++GVV++ K + A+K++ + K ++ E L K
Sbjct: 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
I+ E + K+ IVM+Y E+ D+ L++ R + +V Q+L +AH
Sbjct: 61 IIRYYESFLDKG--KLNIVMEYAENGDLHKLLKMQR--GRPLPEDQVWRFFIQILLGLAH 116
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGC 541
LH ILHRD+K+ NL L +K+GD G+A+ IV T +Y SPEL C
Sbjct: 117 LHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPEL---C 173
Query: 542 --KEYSTPIDMWSVGCIFAEFLCM 563
K Y+ D+W++G + E C
Sbjct: 174 EDKPYNEKSDVWALGVVLYE-CCT 196
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 98.1 bits (244), Expect = 1e-22
Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 8/215 (3%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFP---ITSLREINTLLKAQHPNIVT 425
R+ +G++G VY KDK+ LK LK E P + + +E L K HP IV
Sbjct: 7 RLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVK 66
Query: 426 VREIVVGSNMDKIFIVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHD 484
+ D I+ +Y E D+ +E ++ + +V QLL V ++H
Sbjct: 67 FHASFL--ERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ 124
Query: 485 NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEY 544
ILHRDLK N+ L +LK+GDFG++R T T +Y SPE L + Y
Sbjct: 125 RRILHRDLKAKNIFLK-NNLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEAL-KHQGY 182
Query: 545 STPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
+ D+WS+GCI E C+ F G++ L + RI
Sbjct: 183 DSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRI 217
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 97.9 bits (244), Expect = 3e-22
Identities = 75/302 (24%), Positives = 138/302 (45%), Gaps = 45/302 (14%)
Query: 368 NRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIV-TV 426
+I EG+ G+V A DK T VA+K++ + K++ + E+ + QHPNIV
Sbjct: 25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELL--FNEVVIMRDYQHPNIVEMY 82
Query: 427 REIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
+VG D++++VM+++E + ++ R ++ ++ + +L A++ LH
Sbjct: 83 SSYLVG---DELWVVMEFLEGGALTDIVTHTRMNEE-----QIATVCLAVLKALSFLHAQ 134
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYS 545
++HRD+K+ ++LL+ G +K+ DFG + + +V T ++ +PE ++ Y
Sbjct: 135 GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPE-VISRLPYG 193
Query: 546 TPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTF 605
T +D+WS+G + E + EP + + L+ + RI + P K
Sbjct: 194 TEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRI-RDNLPPKLK---------------- 236
Query: 606 AEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSESPLP--IDP 663
L L + L DP R TA E L H + +++ P I P
Sbjct: 237 ---------NLHKVSPRLRS----FLDRMLVRDPAQRATAAELLNHPFLAKAGPPSSIVP 283
Query: 664 AM 665
M
Sbjct: 284 LM 285
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 96.0 bits (239), Expect = 9e-22
Identities = 66/243 (27%), Positives = 126/243 (51%), Gaps = 19/243 (7%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDE-IVALKRL--------KMEKEKEGFPITSLREIN 413
E+ L + G +G VY+ + K + ++ALK + K ++E++ + E+
Sbjct: 1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEV- 59
Query: 414 TLLKAQ--HPNIVTVREIVVGSNMDKIFIVMDYVE-HDMKSLMETMRSKKQVFIPGEVKC 470
T++K Q HPNIV + + + D+++IVMD +E + +++ KKQ F +
Sbjct: 60 TIIKEQLRHPNIVRYYKTFLEN--DRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWN 117
Query: 471 LMQQLLNAVAHLH-DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVT 529
+ Q++ A+ +LH + I+HRDL +N++L + + DFGLA++ P T +V T
Sbjct: 118 IFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQ-PESKLTSVVGT 176
Query: 530 LWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP-NE 588
+ Y PE++ + Y D+W+ GCI + ++P F + L ++I + + P E
Sbjct: 177 ILYSCPEIVKN-EPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLPE 235
Query: 589 KIW 591
++
Sbjct: 236 GMY 238
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 93.7 bits (233), Expect = 6e-21
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 32/216 (14%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKE--------KEGFPITSLREINTL 415
++ L I G YG VYR K T +VALK + ++ +E ++ LR+
Sbjct: 3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQ---- 58
Query: 416 LKAQHPNIVTVREIVVGSNMD--KIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKC-- 470
+Q PNI GS + +++I+M+Y E +++LM+ P K
Sbjct: 59 --SQPPNITKYY----GSYLKGPRLWIIMEYAEGGSVRTLMKAG--------PIAEKYIS 104
Query: 471 -LMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVT 529
+++++L A+ ++H ++HRD+K +N+L+++ G +K+ DFG+A + V T
Sbjct: 105 VIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGT 164
Query: 530 LWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEP 565
++ +PE++ K Y T D+WS+G E P
Sbjct: 165 PYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNP 200
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 92.8 bits (231), Expect = 1e-20
Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 24/229 (10%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKME-KEKEGFPITSLREINTLLKAQH 420
++ + L + G GVV + + T +I+A+K +++E E I LRE++ L K
Sbjct: 1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQI--LRELDILHKCNS 58
Query: 421 PNIVTVREIVVGS--NMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEV-KCLMQQLLN 477
P IV G+ N I I M+Y+ D SL + ++ + IP + + +L
Sbjct: 59 PYIVGF----YGAFYNNGDISICMEYM--DGGSLDKILKEVQGR-IPERILGKIAVAVLK 111
Query: 478 AVAHLHDNW-ILHRDLKTSNLLLSHRGILKVGDFGLAREY-GSPLKHYTPIVVTLWYRSP 535
+ +LH+ I+HRD+K SN+L++ RG +K+ DFG++ + S K + V T Y +P
Sbjct: 112 GLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTF---VGTSSYMAP 168
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAE-----FLCMEPLFTGKSDLEQLSRI 579
E + G YS D+WS+G E F E L I
Sbjct: 169 ERIQGND-YSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYI 216
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 92.9 bits (231), Expect = 1e-20
Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 46/292 (15%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKR--LKMEKEKEGFPITSLREINTLLKAQHPNIVTVREI 429
+G +G VY+A+ K T A K ++ E+E E F + EI+ L + +HPNIV + E
Sbjct: 15 DGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDF----MVEIDILSECKHPNIVGLYE- 69
Query: 430 VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILH 489
+K++I++++ D +L M ++ +++ + +Q+L A+ LH + ++H
Sbjct: 70 -AYFYENKLWILIEFC--DGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIH 126
Query: 490 RDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE-----Y 544
RDLK N+LL+ G +K+ DFG++ + S L+ + T ++ +PE++ C+ Y
Sbjct: 127 RDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVA-CETFKDNPY 185
Query: 545 STPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMT 604
D+WS+G E MEP +L + + K + K
Sbjct: 186 DYKADIWSLGITLIELAQMEP---PHHELNPMRVLLK------------------ILK-- 222
Query: 605 FAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSE 656
+E P T S + D L L DP R TA E L+H + S+
Sbjct: 223 -SEPP------TLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSD 267
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 92.3 bits (229), Expect = 1e-20
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 5/202 (2%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREI 429
+ +G+YG V + + + +K+L + + +E L + +HPNIV RE
Sbjct: 8 VGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRES 67
Query: 430 VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIP-GEVKCLMQQLLNAVAHLHDNWIL 488
G + ++IVM + E L ++ +K +P +V Q+ A+ +LH+ IL
Sbjct: 68 WEGED-GLLYIVMGFCEGG--DLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHIL 124
Query: 489 HRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPI 548
HRDLKT N+ L+ I+KVGD G+AR + + ++ T +Y SPEL K Y+
Sbjct: 125 HRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSN-KPYNYKS 183
Query: 549 DMWSVGCIFAEFLCMEPLFTGK 570
D+W++GC E ++ F K
Sbjct: 184 DVWALGCCVYEMATLKHAFNAK 205
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 92.6 bits (231), Expect = 2e-20
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 28/216 (12%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLR-------EINT 414
++F+ + + G++G V + K + + ALK L K I L+ E
Sbjct: 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAK------IVKLKQVEHVLNEKRI 54
Query: 415 LLKAQHPNIVTVREIVVGSNMD--KIFIVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCL 471
L +HP +V + GS D +++VM+YV ++ S + K F +
Sbjct: 55 LQSIRHPFLVNL----YGSFQDDSNLYLVMEYVPGGELFSHLR----KSGRFPEPVARFY 106
Query: 472 MQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLW 531
Q++ A+ +LH I++RDLK NLLL G +K+ DFG A+ + YT + T
Sbjct: 107 AAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKG--RTYT-LCGTPE 163
Query: 532 YRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLF 567
Y +PE++L K Y +D W++G + E L P F
Sbjct: 164 YLAPEIIL-SKGYGKAVDWWALGILIYEMLAGYPPF 198
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 92.7 bits (231), Expect = 5e-20
Identities = 73/329 (22%), Positives = 129/329 (39%), Gaps = 75/329 (22%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTLLK 417
++F+ + I G +G V+ +DK T ++ A+K L+ +++ + R+I L
Sbjct: 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAE-RDI--LAD 57
Query: 418 AQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
A P IV + + + +++VM+Y+ D+ +L+ +K VF + + +L+
Sbjct: 58 ADSPWIV--KLYYSFQDEEHLYLVMEYMPGGDLMNLL----IRKDVFPEETARFYIAELV 111
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGS------------------ 518
A+ +H +HRD+K N+L+ G +K+ DFGL ++
Sbjct: 112 LALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRD 171
Query: 519 -PLKHYTP----------IVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLF 567
L V T Y +PE+L G Y D WS+G I E L P F
Sbjct: 172 NVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRG-TPYGLECDWWSLGVILYEMLYGFPPF 230
Query: 568 TGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELG 627
+ E ++I W + P ++
Sbjct: 231 YSDTLQETYNKIIN---------WKESLRFPPDPP--------------------VSPEA 261
Query: 628 YDLLCKFLTYDPVTRIT-ADEALRHDYFS 655
DL+C+ L DP R+ +E H +F
Sbjct: 262 IDLICRLLC-DPEDRLGSFEEIKSHPFFK 289
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 89.9 bits (223), Expect = 1e-19
Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 44/247 (17%)
Query: 365 KCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKE-----KEGFPITSLR-EINTLLKA 418
K L + G +G VY D T +A+K++ + + KE + +L EI L
Sbjct: 8 KLLGQ---GAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKE---VNALECEIQLLKNL 61
Query: 419 QHPNIVTVREIVVGSNMD--KIFIVMDY-----VEHDMKS---LMETMRSKKQVFIPGEV 468
QH IV G D + I M+Y V+ +K+ L ET+ K
Sbjct: 62 QHERIVQY----YGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRK--------- 108
Query: 469 KCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT---P 525
+Q+L V +LH N I+HRD+K +N+L G +K+GDFG ++ + T
Sbjct: 109 --YTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKS 166
Query: 526 IVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGT 585
+ T ++ SPE++ G + Y D+WSVGC E L +P + ++ E ++ IFK
Sbjct: 167 VTGTPYWMSPEVISG-EGYGRKADVWSVGCTVVEMLTEKPPW---AEFEAMAAIFKIATQ 222
Query: 586 PNEKIWP 592
P P
Sbjct: 223 PTNPQLP 229
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 89.7 bits (222), Expect = 1e-19
Identities = 60/217 (27%), Positives = 113/217 (52%), Gaps = 6/217 (2%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKM-EKEKEGFPITSLREINTLLKAQHP 421
F+ +I G + VYRA + VALK++++ E ++EI+ L + HP
Sbjct: 3 NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHP 62
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
N++ + + N ++ IV++ + D+ +++ + +K++ V QL +AV
Sbjct: 63 NVIKYLDSFIEDN--ELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVE 120
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLG 540
H+H ++HRD+K +N+ ++ G++K+GD GL R + S +V T +Y SPE +
Sbjct: 121 HMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE 180
Query: 541 CKEYSTPIDMWSVGCIFAEFLCME-PLFTGKSDLEQL 576
Y+ D+WS+GC+ E ++ P + K +L L
Sbjct: 181 -NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSL 216
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 88.4 bits (219), Expect = 3e-19
Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 10/200 (5%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVV 431
+GTYG+VY A+D T +A+K + + P+ EI +H NIV
Sbjct: 18 KGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPL--HEEIALHSYLKHRNIVQYLGSDS 75
Query: 432 GSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGE--VKCLMQQLLNAVAHLHDNWILH 489
+ KIF M+ V SL +RSK E + +Q+L + +LHDN I+H
Sbjct: 76 ENGFFKIF--MEQVPGG--SLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVH 131
Query: 490 RDLKTSNLLL-SHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL-LGCKEYSTP 547
RD+K N+L+ ++ G++K+ DFG ++ TL Y +PE++ G + Y P
Sbjct: 132 RDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAP 191
Query: 548 IDMWSVGCIFAEFLCMEPLF 567
D+WS+GC E +P F
Sbjct: 192 ADIWSLGCTIVEMATGKPPF 211
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 88.8 bits (220), Expect = 4e-19
Identities = 68/233 (29%), Positives = 124/233 (53%), Gaps = 16/233 (6%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVT- 425
+I +G G VY A D T + VA+K++ ++++ + I + EI + + +HPNIV
Sbjct: 24 FEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELI--INEILVMRENKHPNIVNY 81
Query: 426 VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
+ +VG D++++VM+Y+ SL + + + G++ + ++ L A+ LH N
Sbjct: 82 LDSYLVG---DELWVVMEYLAGG--SLTDVV--TETCMDEGQIAAVCRECLQALEFLHSN 134
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYS 545
++HRD+K+ N+LL G +K+ DFG + + +V T ++ +PE++ K Y
Sbjct: 135 QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR-KAYG 193
Query: 546 TPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPN----EKIWPGF 594
+D+WS+G + E + EP + ++ L L I T GTP EK+ F
Sbjct: 194 PKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLI-ATNGTPELQNPEKLSAIF 245
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 88.2 bits (218), Expect = 4e-19
Identities = 59/221 (26%), Positives = 113/221 (51%), Gaps = 12/221 (5%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTLLKAQ 419
F+ +I G + VYRA VALK+++ M+ + ++EI+ L +
Sbjct: 4 FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARA---DCIKEIDLLKQLN 60
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
HPN++ + N ++ IV++ + D+ +++ + +K++ V QL +A
Sbjct: 61 HPNVIKYYASFIEDN--ELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSA 118
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL 538
+ H+H ++HRD+K +N+ ++ G++K+GD GL R + S +V T +Y SPE +
Sbjct: 119 LEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERI 178
Query: 539 LGCKEYSTPIDMWSVGCIFAEFLCME-PLFTGKSDLEQLSR 578
Y+ D+WS+GC+ E ++ P + K +L L +
Sbjct: 179 HE-NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCK 218
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 89.0 bits (220), Expect = 4e-19
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 12/205 (5%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSL-REINTLLKAQHPN 422
F L I G++G VY A+D R E+VA+K++ ++ + +E+ L K +HPN
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
+ R + + ++VM+Y L+E + Q E+ + L +A+L
Sbjct: 77 TIQYRGCYLREHT--AWLVMEYCLGSASDLLEVHKKPLQEV---EIAAVTHGALQGLAYL 131
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCK 542
H + ++HRD+K N+LLS G++K+GDFG A S + V T ++ +PE++L
Sbjct: 132 HSHNMIHRDVKAGNILLSEPGLVKLGDFGSA----SIMAPANXFVGTPYWMAPEVILAMD 187
Query: 543 E--YSTPIDMWSVGCIFAEFLCMEP 565
E Y +D+WS+G E +P
Sbjct: 188 EGQYDGKVDVWSLGITCIELAERKP 212
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 87.4 bits (216), Expect = 7e-19
Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 29/216 (13%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E+F+ + RI GTYG VY+A++ T E+ A+K +K+E E F + +EI + +H
Sbjct: 9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP-GEDFAVVQ-QEIIMMKDCKHS 66
Query: 422 NIVTVREIVVGSNM--DKIFIVMDY--------VEHDMKSLMETMRSKKQVFIPGEVKCL 471
NIV GS + DK++I M++ + H L E+ ++ +
Sbjct: 67 NIVAY----FGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSES-----------QIAYV 111
Query: 472 MQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLW 531
++ L + +LH +HRD+K +N+LL+ G +K+ DFG++ + + + + T +
Sbjct: 112 SRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPY 171
Query: 532 YRSPELLLGCKE--YSTPIDMWSVGCIFAEFLCMEP 565
+ +PE+ ++ Y+ D+W+VG E ++P
Sbjct: 172 WMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQP 207
Score = 33.1 bits (75), Expect = 0.59
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
E+F+ + RI GTYG VY+A++ T E+ A
Sbjct: 9 EDFELIQRIGSGTYGDVYKARNVNTGELAA 38
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 87.5 bits (216), Expect = 1e-18
Identities = 64/226 (28%), Positives = 123/226 (54%), Gaps = 12/226 (5%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+++ +I +G G VY A D T + VA+K++ ++++ + I + EI + + ++P
Sbjct: 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELI--INEILVMRENKNP 76
Query: 422 NIVT-VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
NIV + +VG D++++VM+Y+ SL + + + G++ + ++ L A+
Sbjct: 77 NIVNYLDSYLVG---DELWVVMEYLAGG--SLTDVV--TETCMDEGQIAAVCRECLQALD 129
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLG 540
LH N ++HRD+K+ N+LL G +K+ DFG + + +V T ++ +PE++
Sbjct: 130 FLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR 189
Query: 541 CKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP 586
K Y +D+WS+G + E + EP + ++ L L I T GTP
Sbjct: 190 -KAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLI-ATNGTP 233
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 86.6 bits (215), Expect = 1e-18
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 16/235 (6%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITS-LREINTLLKAQHPN 422
F+ L I +G +G V + + T ++ A+K + +K E + + L E L + HP
Sbjct: 2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPF 61
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMR---SKKQVFIPGEVKCLMQQLLNAV 479
+V + + + +++V+D + L +R S+K F +VK + +++ A+
Sbjct: 62 LVNLWYSF--QDEENMYLVVDLL------LGGDLRYHLSQKVKFSEEQVKFWICEIVLAL 113
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+LH I+HRD+K N+LL +G + + DF +A + +P T T Y +PE+L
Sbjct: 114 EYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKV-TPDTLTTSTSGTPGYMAPEVLC 172
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDL--EQLSRIFKTMGTPNEKIWP 592
+ YS +D WS+G E L + + G S +Q+ +T W
Sbjct: 173 R-QGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWS 226
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 87.5 bits (216), Expect = 1e-18
Identities = 63/226 (27%), Positives = 123/226 (54%), Gaps = 12/226 (5%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+++ +I +G G VY A D T + VA++++ ++++ + I + EI + + ++P
Sbjct: 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELI--INEILVMRENKNP 77
Query: 422 NIVT-VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
NIV + +VG D++++VM+Y+ SL + + + G++ + ++ L A+
Sbjct: 78 NIVNYLDSYLVG---DELWVVMEYLAGG--SLTDVV--TETCMDEGQIAAVCRECLQALE 130
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLG 540
LH N ++HRD+K+ N+LL G +K+ DFG + + +V T ++ +PE++
Sbjct: 131 FLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR 190
Query: 541 CKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTP 586
K Y +D+WS+G + E + EP + ++ L L I T GTP
Sbjct: 191 -KAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLI-ATNGTP 234
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 86.0 bits (213), Expect = 2e-18
Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 36/232 (15%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRL-------KMEKEKEGFPITSLREINTLLKAQHPN 422
I G++G VY + + E++A+K++ + K REI L + QH N
Sbjct: 8 IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67
Query: 423 IVTVREIVVGSNMDK--IFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
IV +GS++D + I ++YV + + + F V+ ++Q+L +
Sbjct: 68 IVQY----LGSSLDADHLNIFLEYVP---GGSVAALLNNYGAFEETLVRNFVRQILKGLN 120
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY------GSPLKHYTPIVVTLWYRS 534
+LH+ I+HRD+K +N+L+ ++G +K+ DFG++++ + ++++ +
Sbjct: 121 YLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMA 180
Query: 535 PELLLGCKE--YSTPIDMWSVGCIFAEFLCMEPLFTGK---SDLEQLSRIFK 581
PE++ K+ Y+ D+WS+GC+ E + TGK D QL IFK
Sbjct: 181 PEVV---KQTSYTRKADIWSLGCLVVE------MLTGKHPFPDCTQLQAIFK 223
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 86.7 bits (214), Expect = 2e-18
Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVT-VR 427
+I +G G V+ A D T + VA+K++ ++K+ + I + EI + + ++PNIV +
Sbjct: 26 KIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELI--INEILVMKELKNPNIVNFLD 83
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWI 487
+VG D++F+VM+Y+ SL + + + ++ + ++ L A+ LH N +
Sbjct: 84 SFLVG---DELFVVMEYLAGG--SLTDVV--TETCMDEAQIAAVCRECLQALEFLHANQV 136
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTP 547
+HRD+K+ N+LL G +K+ DFG + + +V T ++ +PE++ K Y
Sbjct: 137 IHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR-KAYGPK 195
Query: 548 IDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPN----EKIWPGF 594
+D+WS+G + E + EP + ++ L L I T GTP EK+ P F
Sbjct: 196 VDIWSLGIMAIEMVEGEPPYLNENPLRALYLI-ATNGTPELQNPEKLSPIF 245
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 86.8 bits (215), Expect = 2e-18
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 20/201 (9%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL----KMEKEKEGFPITSLREINTLLKAQ 419
F L I G++G VY A+D RT+E+VA+K++ K EK ++E+ L + +
Sbjct: 17 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQ---DIIKEVRFLQQLR 73
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
HPN + + + + ++VM+Y ++E + Q E+ + L +
Sbjct: 74 HPNTIEYKGCYLREHT--AWLVMEYCLGSASDILEVHKKPLQEV---EIAAICHGALQGL 128
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
A+LH + +HRD+K N+LL+ G +K+ DFG A SP + V T ++ +PE++L
Sbjct: 129 AYLHSHERIHRDIKAGNILLTEPGTVKLADFGSA-SLVSPANSF---VGTPYWMAPEVIL 184
Query: 540 GCKE--YSTPIDMWSVG--CI 556
E Y +D+WS+G CI
Sbjct: 185 AMDEGQYDGKVDVWSLGITCI 205
Score = 33.2 bits (76), Expect = 0.64
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVAPCK-SGNGK 790
F L I G++G VY A+D RT+E+VA K S +GK
Sbjct: 17 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGK 53
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 86.3 bits (213), Expect = 4e-18
Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 12/205 (5%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSL-REINTLLKAQHPN 422
F L I G++G VY A+D RT+E+VA+K++ ++ + +E+ L + +HPN
Sbjct: 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN 86
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
+ + + + ++VM+Y L+E + Q E+ + L +A+L
Sbjct: 87 SIEYKGCYLREHT--AWLVMEYCLGSASDLLEVHKKPLQEV---EIAAITHGALQGLAYL 141
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCK 542
H + ++HRD+K N+LL+ G +K+ DFG A SP + V T ++ +PE++L
Sbjct: 142 HSHNMIHRDIKAGNILLTEPGQVKLADFGSA-SIASPANSF---VGTPYWMAPEVILAMD 197
Query: 543 E--YSTPIDMWSVGCIFAEFLCMEP 565
E Y +D+WS+G E +P
Sbjct: 198 EGQYDGKVDVWSLGITCIELAERKP 222
Score = 30.4 bits (68), Expect = 4.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 755 FKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
F L I G++G VY A+D RT+E+VA
Sbjct: 27 FTDLREIGHGSFGAVYFARDVRTNEVVA 54
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 84.9 bits (210), Expect = 5e-18
Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEK----EKEGFPITSLREINTLLKAQHPNIVTVRE 428
G + Y+A+D +T ++A+K++ + E+E +EI + + HP+I+ +
Sbjct: 11 GAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLG 70
Query: 429 IVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWIL 488
+ +F+ E + + SK F + +QLL +++LH+N I+
Sbjct: 71 ATCEDSHFNLFV-----EWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQII 125
Query: 489 HRDLKTSNLLLSHRG-ILKVGDFGLAREYGSPL----KHYTPIVVTLWYRSPELLLGCKE 543
HRD+K +NLL+ G L++ DFG A + + ++ T+ + +PE+L G ++
Sbjct: 126 HRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRG-EQ 184
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFK 581
Y D+WSVGC+ E +P + + L+ IFK
Sbjct: 185 YGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFK 222
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 84.7 bits (209), Expect = 8e-18
Identities = 78/302 (25%), Positives = 148/302 (49%), Gaps = 47/302 (15%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV-R 427
+I EG+ G+V A K + ++VA+K++ + K++ + E+ + QH N+V +
Sbjct: 27 KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELL--FNEVVIMRDYQHENVVEMYN 84
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKS--LMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
+VG D++++VM+++E + + T +++Q+ CL +L A++ LH
Sbjct: 85 SYLVG---DELWVVMEFLEGGALTDIVTHTRMNEEQI----AAVCL--AVLKALSVLHAQ 135
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYS 545
++HRD+K+ ++LL+H G +K+ DFG + + +V T ++ +PEL+ Y
Sbjct: 136 GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLP-YG 194
Query: 546 TPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTF 605
+D+WS+G + E + EP + + L K M + + P KL + K++
Sbjct: 195 PEVDIWSLGIMVIEMVDGEPPYFNEPPL-------KAMKMIRDNLPP---KLKNLHKVS- 243
Query: 606 AEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSES--PLPIDP 663
P++ G L + L DP R TA E L+H + +++ P I P
Sbjct: 244 ---PSLKG----------------FLDRLLVRDPAQRATAAELLKHPFLAKAGPPSCIVP 284
Query: 664 AM 665
M
Sbjct: 285 LM 286
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 84.0 bits (208), Expect = 1e-17
Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 17/200 (8%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E+ L+R+ EG G V + + K T I ALK + LRE+ + P
Sbjct: 1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTI-TTDPNPDLQKQILRELEINKSCKSP 59
Query: 422 NIVTVREIVVGSNMDK----IFIVMDYVEHDMKSLMETM-RSKKQVFIPGE--VKCLMQQ 474
IV G+ +D+ I I M+Y E SL + KK+ GE + + +
Sbjct: 60 YIVKY----YGAFLDESSSSIGIAMEYCEG--GSLDSIYKKVKKRGGRIGEKVLGKIAES 113
Query: 475 LLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRS 534
+L +++LH I+HRD+K SN+LL+ +G +K+ DFG++ E + L T +Y +
Sbjct: 114 VLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA--GTFTGTSFYMA 171
Query: 535 PELLLGCKEYSTPIDMWSVG 554
PE + G K YS D+WS+G
Sbjct: 172 PERIQG-KPYSITSDVWSLG 190
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 83.9 bits (207), Expect = 1e-17
Identities = 58/212 (27%), Positives = 113/212 (53%), Gaps = 17/212 (8%)
Query: 362 EEF-KCLNRIEEGTYGVVYRAKDKRTDEIVALKRL--KMEKEKEGFPITSLREINTLLKA 418
EEF + + + +G +G VY+A++K T + A K + K E+E E + + EI+ L
Sbjct: 4 EEFWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMV----EIDILASC 59
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
HPNIV + + N ++I++++ ++ M ++ +++ + +Q L A
Sbjct: 60 DHPNIVKLLDAFYYEN--NLWILIEFCAGG--AVDAVMLELERPLTEPQIRVVCKQTLEA 115
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL 538
+ +LH+N I+HRDLK N+L + G +K+ DFG++ + ++ + T ++ +PE++
Sbjct: 116 LNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVV 175
Query: 539 LGC-----KEYSTPIDMWSVGCIFAEFLCMEP 565
+ C + Y D+WS+G E +EP
Sbjct: 176 M-CETSKDRPYDYKADVWSLGITLIEMAQIEP 206
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 83.5 bits (206), Expect = 2e-17
Identities = 67/294 (22%), Positives = 143/294 (48%), Gaps = 43/294 (14%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV-R 427
+I EG+ G+V A++K + VA+K + + K++ + E+ + QH N+V + +
Sbjct: 28 KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELL--FNEVVIMRDYQHQNVVEMYK 85
Query: 428 EIVVGSNMDKIFIVMDYVEHD-MKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNW 486
+VG ++++++M++++ + ++ R ++ ++ + + +L A+ +LH
Sbjct: 86 SYLVG---EELWVLMEFLQGGALTDIVSQTRLNEE-----QIATVCESVLQALCYLHSQG 137
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
++HRD+K+ ++LL+ G +K+ DFG + + +V T ++ +PE ++ Y T
Sbjct: 138 VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPE-VISRTPYGT 196
Query: 547 PIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTFA 606
+D+WS+G + E + EP + S ++ + R+ +P K+ K+ V +
Sbjct: 197 EVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRL---RDSPPPKL-KNAHKISPVLR---- 248
Query: 607 EYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYFSESPLP 660
D L + LT +P R TA E L H + ++ LP
Sbjct: 249 ----------------------DFLERMLTREPQERATAQELLDHPFLLQTGLP 280
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 81.6 bits (201), Expect = 8e-17
Identities = 75/294 (25%), Positives = 135/294 (45%), Gaps = 44/294 (14%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E F L RI +G++G V++ D RT ++VA+K + +E+ ++ +EI L + P
Sbjct: 4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQ-QEITVLSQCDSP 62
Query: 422 NIVTVREIVVGSNM--DKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
+ GS + K++I+M+Y+ S ++ +R+ F ++ +++++L +
Sbjct: 63 YVTKY----YGSYLKGTKLWIIMEYLGGG--SALDLLRAGP--FDEFQIATMLKEILKGL 114
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+LH +HRD+K +N+LLS +G +K+ DFG+A + V T ++ +PE++
Sbjct: 115 DYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQ 174
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPA 599
Y + D+WS+G E EP SD+ + +F + FSK
Sbjct: 175 Q-SAYDSKADIWSLGITAIELAKGEP---PNSDMHPMRVLFLIPKNNPPTLTGEFSK--- 227
Query: 600 VQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDY 653
F E+ + C L DP R TA E L+H +
Sbjct: 228 ----PFKEFIDA--------------------C--LNKDPSFRPTAKELLKHKF 255
Score = 29.6 bits (66), Expect = 7.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
E F L RI +G++G V++ D RT ++VA
Sbjct: 4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVA 33
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 82.0 bits (202), Expect = 1e-16
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 12/207 (5%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITS-LREINTLLKAQH 420
E F L+ I G++G VY A + T+E+VA+K++ ++ ++E+ L + +H
Sbjct: 21 EIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKH 80
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
PN + + + + ++VM+Y L+E + Q E+ + L +A
Sbjct: 81 PNTIEYKGCYLKEHT--AWLVMEYCLGSASDLLEVHKKPLQEV---EIAAITHGALQGLA 135
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLG 540
+LH + ++HRD+K N+LL+ G +K+ DFG A SP + V T ++ +PE++L
Sbjct: 136 YLHSHNMIHRDIKAGNILLTEPGQVKLADFGSA-SKSSPANSF---VGTPYWMAPEVILA 191
Query: 541 CKE--YSTPIDMWSVGCIFAEFLCMEP 565
E Y +D+WS+G E +P
Sbjct: 192 MDEGQYDGKVDVWSLGITCIELAERKP 218
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 81.2 bits (200), Expect = 1e-16
Identities = 57/214 (26%), Positives = 118/214 (55%), Gaps = 15/214 (7%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV-R 427
+I EG+ G+V A +K T + VA+K++ + K++ + E+ + H N+V +
Sbjct: 29 KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELL--FNEVVIMRDYHHENVVDMYN 86
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKS--LMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
+VG D++++VM+++E + + T +++Q+ CL +L A+++LH+
Sbjct: 87 SYLVG---DELWVVMEFLEGGALTDIVTHTRMNEEQI----ATVCL--SVLRALSYLHNQ 137
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYS 545
++HRD+K+ ++LL+ G +K+ DFG + + +V T ++ +PE++ Y
Sbjct: 138 GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLP-YG 196
Query: 546 TPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
T +D+WS+G + E + EP + + L+ + RI
Sbjct: 197 TEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRI 230
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 80.5 bits (199), Expect = 2e-16
Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 28/233 (12%)
Query: 365 KCLNRIEEGTYGVVYRAK----DKRTDEIVALKRLKMEKEKEGFPITSL-REINTLLKAQ 419
K + ++ EG +G V + T E VA+K L E + REI L
Sbjct: 7 KFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLN--HSGEEQHRSDFEREIEILRTLD 64
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
H NIV + + + ++M+Y+ SL + ++ + + Q+ +
Sbjct: 65 HENIVKYKGVCEKPGGRSLRLIMEYLPSG--SLRDYLQRHRDQINLKRLLLFSSQICKGM 122
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT-------PIVVTLWY 532
+L +HRDL N+L+ ++K+ DFGLA+ +Y PI WY
Sbjct: 123 DYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPI---FWY 179
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFT-GKSDLEQLSRIFKTMG 584
+PE L K S D+WS G E LFT G + + +G
Sbjct: 180 -APECLRTSKFSSAS-DVWSFGVTLYE------LFTYGDPSQSPPAEFLRMIG 224
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 82.6 bits (204), Expect = 3e-16
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVG 432
G G V AK E A+K + ME E + E+ LL +IV E
Sbjct: 43 GATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAK 102
Query: 433 S------NMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
N+ I +V+DY D++ +++ + F E L Q+L AV H+H
Sbjct: 103 KDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK 162
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVV---------TLWYRSPE 536
++HRD+K++N+LL G++K+GDFG + K Y V T +Y +PE
Sbjct: 163 HMIHRDIKSANILLCSNGLVKLGDFGFS-------KMYAATVSDDVGRTFCGTPYYVAPE 215
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKS 571
+ YS DM+S+G + E L ++ F G++
Sbjct: 216 IWRRKP-YSKKADMFSLGVLLYELLTLKRPFDGEN 249
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 80.6 bits (199), Expect = 3e-16
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKME---KEKEGFPITSLREINTLLK-AQHPNIVT 425
I +G++G V AK K + A+K L+ + K+KE I + R N LLK +HP +V
Sbjct: 3 IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAER--NVLLKNVKHPFLVG 60
Query: 426 VREIVVGSNMDKIFIVMDYVE--------HDMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
+ DK++ V+DYV +S E R++ F E+
Sbjct: 61 LHYSF--QTADKLYFVLDYVNGGELFFHLQRERSFPEP-RAR---FYAAEIAS------- 107
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
A+ +LH I++RDLK N+LL +G + + DFGL +E K + T Y +PE+
Sbjct: 108 ALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEV 167
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
L + Y +D W +G + E L P F + E I
Sbjct: 168 LRK-QPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNI 208
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 79.4 bits (196), Expect = 3e-16
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 27/227 (11%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKE----KEGFPITSLREINTLLKA 418
E L + G +GVV+ K + ++ +KM +E ++ F + E ++K
Sbjct: 5 ELTFLKELGSGQFGVVHLGKWRGKIDVA----IKMIREGAMSEDDF----IEEAKVMMKL 56
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
HPN+V + + + IFIV +Y+ + L+ +R +K + + + A
Sbjct: 57 SHPNLVQLYGVC--TKQRPIFIVTEYMANG--CLLNYLRERKGKLGTEWLLDMCSDVCEA 112
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYR 533
+ +L N +HRDL N L+ ++KV DFGLAR +Y S P+ +
Sbjct: 113 MEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVK----WA 168
Query: 534 SPELLLGCKEYSTPIDMWSVGCIFAE-FLCMEPLFTGKSDLEQLSRI 579
PE+ + +S+ D+WS G + E F + + S+ E + +
Sbjct: 169 PPEVFDYSR-FSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESV 214
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 78.9 bits (194), Expect = 6e-16
Identities = 58/216 (26%), Positives = 110/216 (50%), Gaps = 29/216 (13%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+++ + R+ GTYG VY+A++ T E+ A+K +K+E + F + +EI + + +H
Sbjct: 9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLE-PGDDFSLIQ-QEIFMVKECKHC 66
Query: 422 NIVTVREIVVGSNM--DKIFIVMDY--------VEHDMKSLMETMRSKKQVFIPGEVKCL 471
NIV GS + +K++I M+Y + H L E ++ +
Sbjct: 67 NIVAY----FGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSEL-----------QIAYV 111
Query: 472 MQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLW 531
++ L +A+LH +HRD+K +N+LL+ G +K+ DFG+A + + + + T +
Sbjct: 112 CRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPY 171
Query: 532 YRSPELLLGCKE--YSTPIDMWSVGCIFAEFLCMEP 565
+ +PE+ K Y+ D+W+VG E ++P
Sbjct: 172 WMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQP 207
Score = 30.4 bits (68), Expect = 5.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
+++ + R+ GTYG VY+A++ T E+ A
Sbjct: 9 HDYELIQRVGSGTYGDVYKARNLHTGELAA 38
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 78.5 bits (194), Expect = 7e-16
Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 25/204 (12%)
Query: 370 IEEGTYGVVYRA---KDKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQHPNI 423
I G +G V R + + VA+K LK +K++ F L E + + + HPNI
Sbjct: 12 IGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDF----LTEASIMGQFDHPNI 67
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
+ + +V S + I+ +Y+E+ SL + +R F G++ +++ + + + +L
Sbjct: 68 IRLEGVVTKSR--PVMIITEYMENG--SLDKFLRENDGKFTVGQLVGMLRGIASGMKYLS 123
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT------PIVVTLWYRSPEL 537
+ +HRDL N+L++ + KV DFGL+R YT PI T +PE
Sbjct: 124 EMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWT----APE- 178
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFL 561
+ +++++ D+WS G + E +
Sbjct: 179 AIAYRKFTSASDVWSFGIVMWEVM 202
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 77.8 bits (191), Expect = 2e-15
Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 16/211 (7%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL--KMEKEKEGFPITSLREINTLLKAQ 419
E ++ + + +G +G VY+AK+K T + A K + K E+E E + + EI L
Sbjct: 12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMV----EIEILATCN 67
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
HP IV + K++I++++ ++ M + +++ + +Q+L A+
Sbjct: 68 HPYIVKLLGAFYWDG--KLWIMIEFCPGG--AVDAIMLELDRGLTEPQIQVICRQMLEAL 123
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+LH I+HRDLK N+LL+ G +K+ DFG++ + L+ + T ++ +PE+++
Sbjct: 124 QYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVM 183
Query: 540 GCKE-----YSTPIDMWSVGCIFAEFLCMEP 565
C+ Y D+WS+G E +EP
Sbjct: 184 -CETMKDTPYDYKADIWSLGITLIEMAQIEP 213
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 77.5 bits (191), Expect = 2e-15
Identities = 52/231 (22%), Positives = 108/231 (46%), Gaps = 34/231 (14%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREI-------NT 414
++ + + + GT+G V+ +D+ ++ ALK + + + + L++
Sbjct: 1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPE------VIRLKQEQHVHNEKRV 54
Query: 415 LLKAQHPNIVTVREIVVGSNMDK--IFIVMDYVEH-DMKSLMETMR---SKKQVFIPGEV 468
L + HP I+ + + D+ ++++M+YV ++ S + + +F E+
Sbjct: 55 LKEVSHPFIIRL----FWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEI 110
Query: 469 KCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVV 528
C A+ +LH I++RDLK N+LL G +K+ DFG A++ + +T +
Sbjct: 111 VC-------ALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD--RTWT-LCG 160
Query: 529 TLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
T Y +PE ++ K ++ +D W++G + E L P F + +I
Sbjct: 161 TPEYLAPE-VIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKI 210
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 80.6 bits (198), Expect = 3e-15
Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 33/249 (13%)
Query: 357 GCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLL 416
G + E++ + +I G +G V+ K KRT E K + KE + E+N +
Sbjct: 8 GESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMR 67
Query: 417 KAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLM---Q 473
+ +H NIV + + K++I+M++ D L ++ ++F E ++ +
Sbjct: 68 ELKHKNIVRYIDRFLNKANQKLYILMEFC--DAGDLSRNIQKCYKMFGKIEEHAIVDITR 125
Query: 474 QLLNAVAHLHD-------NWILHRDLKTSNLLLSH-----------------RGILKVGD 509
QLL+A+A+ H+ +LHRDLK N+ LS R I K+GD
Sbjct: 126 QLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGD 185
Query: 510 FGLAREYG-SPLKHYTPIVVTLWYRSPELLLG-CKEYSTPIDMWSVGCIFAEFLCMEPLF 567
FGL++ G + H V T +Y SPELLL K Y DMW++GCI E + F
Sbjct: 186 FGLSKNIGIESMAH--SCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPF 243
Query: 568 TGKSDLEQL 576
++ QL
Sbjct: 244 HKANNFSQL 252
Score = 40.9 bits (95), Expect = 0.004
Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 16/220 (7%)
Query: 39 HGSSSSSQQDKSSSQHKSHHRS--RHRDERDRRHHHKEKERDRNKSDQSDGGHKSHR--- 93
HG SSS + S+ + ++ S +D K Q DG H
Sbjct: 366 HGRRSSSCASRQSANNVTNITSITSVTSVASVASVASVPSKDDRKYPQ-DGATHCHAVNG 424
Query: 94 ----RRDEDRKHRDERKAREAQ-KSKEYTAREIDELKAKEADLRARLERKRYSNPLREK- 147
R D+D R + A K+ E E ++ E + R RLER+R RE+
Sbjct: 425 HYGGRVDKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERL 484
Query: 148 --EKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEA 205
E++ERE + LE +R+ +ERV +E R R R+ + +N +
Sbjct: 485 ERERLERERLERDRLERDRLDRLERERVDRLE--RDRLEKARRNSYFLKGMENGLSAGGG 542
Query: 206 HQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRS 245
G GA G + R+ + + + +R
Sbjct: 543 PGDGPGVGAGVGAGVGTSDGRNHSGVRSGIHCSIQSSARG 582
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 77.8 bits (192), Expect = 3e-15
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 27/223 (12%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSL----REINTLLKAQ 419
F+CL + G +G V A+ K+T E+ A+K LK + SL R T +
Sbjct: 1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSER 60
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHD--MKSLMETMRSKKQ-VFIPGEVKCLMQQLL 476
HP +V + D + VM+Y M + + S+ + VF V L
Sbjct: 61 HPFLVNLFACF--QTEDHVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACV-VL----- 112
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE---YGSPLKHY--TPIVVTLW 531
+ +LH+N I++RDLK NLLL G +K+ DFGL +E +G + TP
Sbjct: 113 -GLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTP-----E 166
Query: 532 YRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLE 574
+ +PE+L Y+ +D W +G + E L E F G + E
Sbjct: 167 FLAPEVLTE-TSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEE 208
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 75.5 bits (186), Expect = 7e-15
Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 26/207 (12%)
Query: 360 SVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKME-KEKEGFPITSLREINTLLKA 418
+ +E K I +G +G V + + VA+K LK + + F L E + +
Sbjct: 4 NSKELKLGATIGKGEFGDVMLGDYR--GQKVAVKCLKDDSTAAQAF----LAEASVMTTL 57
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ---QL 475
+HPN+V + +V+ N ++IV +Y+ SL++ +RS+ + I + + +
Sbjct: 58 RHPNLVQLLGVVLQGN--PLYIVTEYMAKG--SLVDYLRSRGRAVI--TLAQQLGFALDV 111
Query: 476 LNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT---PIVVTLWY 532
+ +L + +HRDL N+L+S + KV DFGLA+E + + P+ T
Sbjct: 112 CEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKE--ASQGQDSGKLPVKWT--- 166
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAE 559
+PE L K++ST D+WS G + E
Sbjct: 167 -APEALRE-KKFSTKSDVWSFGILLWE 191
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 75.5 bits (185), Expect = 7e-15
Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 25/233 (10%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLR------EINTLLKAQHPNIVT 425
+G +G VY D T +A+K+++ + E P TS EI L H IV
Sbjct: 12 QGAFGRVYLCYDADTGRELAVKQVQFDPES---PETSKEVNALECEIQLLKNLLHERIVQ 68
Query: 426 VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
+ + I M+++ S+ + ++S + +Q+L V++LH N
Sbjct: 69 YYGCLRDPMERTLSIFMEHMPGG--SIKDQLKSYG-ALTENVTRKYTRQILEGVSYLHSN 125
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREY------GSPLKHYTPIVVTLWYRSPELLL 539
I+HRD+K +N+L G +K+GDFG ++ G+ +K T T ++ SPE++
Sbjct: 126 MIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTG---TPYWMSPEVIS 182
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWP 592
G + Y D+WSVGC E L +P + ++ E ++ IFK P + P
Sbjct: 183 G-EGYGRKADIWSVGCTVVEMLTEKPPW---AEFEAMAAIFKIATQPTNPVLP 231
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 75.5 bits (185), Expect = 1e-14
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E F L RI +G++G VY+ D RT E+VA+K + +E+ ++ +EI L + P
Sbjct: 4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQ-QEITVLSQCDSP 62
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGE-----VKCLMQQLL 476
I + K++I+M+Y+ S + PG + +++++L
Sbjct: 63 YITRYYGSYLKGT--KLWIIMEYLGGG---------SALDLLKPGPLEETYIATILREIL 111
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
+ +LH +HRD+K +N+LLS +G +K+ DFG+A + V T ++ +PE
Sbjct: 112 KGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPE 171
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIF 580
++ Y D+WS+G E EP SDL + +F
Sbjct: 172 VIKQ-SAYDFKADIWSLGITAIELAKGEPPN---SDLHPMRVLF 211
Score = 30.0 bits (67), Expect = 5.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 753 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVA 782
E F L RI +G++G VY+ D RT E+VA
Sbjct: 4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVA 33
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 76.1 bits (187), Expect = 1e-14
Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 32/315 (10%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTLLKAQHPNIVTVR 427
+G++G V A+ K + + A+K LK ++ + +T R ++ L HP + +
Sbjct: 5 KGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILS--LARNHPFLTQL- 61
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWI 487
D++F VM++V + LM ++ K + F + ++ +A+ LHD I
Sbjct: 62 -YCCFQTPDRLFFVMEFV--NGGDLMFHIQ-KSRRFDEARARFYAAEITSALMFLHDKGI 117
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTP 547
++RDLK N+LL H G K+ DFG+ +E K + T Y +PE+L Y
Sbjct: 118 IYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQE-MLYGPS 176
Query: 548 IDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQ--KMTF 605
+D W++G + E LC F +++ + I +E ++P + AV K
Sbjct: 177 VDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILN-----DEVVYPTWLSQDAVDILKAFM 231
Query: 606 AEYP-------NVGGLKTKVAGSILTELGYDLLCKFLTYDPVT-RITADEALRH---DYF 654
+ P +GG + + EL ++ L + P RI + E + + D+
Sbjct: 232 TKNPTMRLGSLTLGGEEAILRHPFFKELDWEKLNRRQIEPPFRPRIKSREDVSNFDPDFI 291
Query: 655 SESPL--PIDPAMFP 667
E P+ PI+ ++ P
Sbjct: 292 KEDPVLTPIEESLLP 306
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 76.4 bits (188), Expect = 2e-14
Identities = 89/408 (21%), Positives = 146/408 (35%), Gaps = 64/408 (15%)
Query: 271 AGSEESSQDGSEDSSQDSSSSDEEEN-DENEDKADKKEKKAKKRKKEDASPNESERDVSP 329
+ S G++ S ++ D+ ++ DE D D +E SP
Sbjct: 19 YEAIFSLTGGTDTSDSKDTTGDKFDDCDELGDSDDVTHATDYDADEESLSPQTDVCQEPC 78
Query: 330 HVIMDQDVDMEIELEKDTLPPYLPAIQGCRSVEEFKCLNRIEEGTYGVVYRAKDK-RTDE 388
D + ++ + L P +G E F C +E V+ +A +T
Sbjct: 79 ETTSSSDPASVVRMQYNILSSLTPGSEG----EVFVCTKHGDEQRKKVIVKAVTGGKTPG 134
Query: 389 IVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHD 448
REI+ L H I+ I + +VM + D
Sbjct: 135 ---------------------REIDILKTISHRAII--NLIHAYRWKSTVCMVMPKYKCD 171
Query: 449 MKSLMETMR--SKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILK 506
+ + ++ +Q + ++LL A+A+LH I+HRD+KT N+ L
Sbjct: 172 LFTYVDRSGPLPLEQAIT------IQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAV 225
Query: 507 VGDFGLAREYGSPLKHYTP----IVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLC 562
+GDFG A + + TP TL SPE LL Y D+WS G + E
Sbjct: 226 LGDFGAACKLDAHP--DTPQCYGWSGTLETNSPE-LLALDPYCAKTDIWSAGLVLFEMSV 282
Query: 563 MEPLFTGK---SDLEQLSRIFKTMGT--------PNEKIWPGFSKLPAVQKMTFAEYPNV 611
GK S QL I + M + + F + V + + P V
Sbjct: 283 KNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYT-IPPV 341
Query: 612 GGLKTKVAGSILT-ELGYDLLCKFLTYDPVTRITADEALRHDYFSESP 658
+ + ++ Y L+ K LT+D R +A + L F++ P
Sbjct: 342 ------IRKYGMHMDVEY-LIAKMLTFDQEFRPSAQDILSLPLFTKEP 382
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 74.2 bits (182), Expect = 2e-14
Identities = 78/303 (25%), Positives = 136/303 (44%), Gaps = 69/303 (22%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKM--------EKEKEGFPITSLREINTLLKA-QHPN 422
+G YG VY +++A+K++++ EKE E L+E LLK+ +H N
Sbjct: 10 KGAYGTVYCGL-TNQGQLIAVKQVELDTSNVLAAEKEYE-----KLQEEVDLLKSLKHVN 63
Query: 423 IVTVREIVVGSNMDK--IFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKC-LMQQLLNA 478
IV +G+ +D I I M++V + S++ +P V C +Q+L+
Sbjct: 64 IVQY----LGTCLDDNTISIFMEFVPGGSISSILNRFGP-----LPEPVFCKYTKQILDG 114
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE------YGSPLKHYTPIVVTLWY 532
VA+LH+N ++HRD+K +N++L GI+K+ DFG AR +G+ + T ++
Sbjct: 115 VAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYW 174
Query: 533 RSPELLLGCKE--YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKI 590
+PE++ E Y D+WS+GC E +P + +++L+ +F I
Sbjct: 175 MAPEVI---NESGYGRKSDIWSIGCTVFEMATGKPPL---ASMDRLAAMF--------YI 220
Query: 591 WPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALR 650
+P + + D + LT D R +A + LR
Sbjct: 221 GAHRGLMPRLPDS-------------------FSAAAIDFVTSCLTRDQHERPSALQLLR 261
Query: 651 HDY 653
HD+
Sbjct: 262 HDF 264
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 75.3 bits (185), Expect = 3e-14
Identities = 81/351 (23%), Positives = 149/351 (42%), Gaps = 45/351 (12%)
Query: 326 DVSPHVIMDQDVDMEIELEKDTLPPYLPAIQGCRSVEE---FKCLNRIEEGTYGVVYRAK 382
D+S + D D E + D +P Q R V + + + G+ G V+ A
Sbjct: 27 DISDGDLEYSDDDSASESDDDDDDGLIPTKQKAREVVASLGYTVIKTLTPGSEGRVFVAT 86
Query: 383 DKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDKIFIVM 442
+ V LK G T+L E L HP+++ +++ +V + +V+
Sbjct: 87 KPGQPDPVVLKI--------GQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAI--TCMVL 136
Query: 443 DYVEHDMKSLMETMRSKKQVFIP-GEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSH 501
+ D+ + + T RS+ +P + + +Q+L + +LH I+HRD+KT N+ ++
Sbjct: 137 PHYSSDLYTYL-TKRSRP---LPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFIND 192
Query: 502 RGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
+ +GD G A+ + + + T+ +PE+L K Y++ D+WS G + E L
Sbjct: 193 VDQVCIGDLGAAQ-FPVVAPAFLGLAGTVETNAPEVLARDK-YNSKADIWSAGIVLFEML 250
Query: 562 CM------EPLFTG----KSDLEQLSRIFKTMGT--------PNEKIWPGFSKLPAVQKM 603
+P T KS L +I T+ P ++ GF + ++++
Sbjct: 251 AYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQ 310
Query: 604 TFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVTRITADEALRHDYF 654
+ YP + + G L K LT+D R +A+E L + F
Sbjct: 311 PYTRYPCFQRVNLPIDGEFLVH-------KMLTFDAAMRPSAEEILNYPMF 354
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 75.8 bits (186), Expect = 4e-14
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 436 DKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKT 494
DK+ ++M+Y D+ ++ + F EV L Q++ A+ +H ++HRDLK+
Sbjct: 138 DKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKS 197
Query: 495 SNLLLSHRGILKVGDFGLAREYGS--PLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWS 552
+N+ L GI+K+GDFG +++Y L + T +Y +PEL K YS DMWS
Sbjct: 198 ANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWER-KRYSKKADMWS 256
Query: 553 VGCIFAEFLCMEPLFTGKSDLEQLSRIF 580
+G I E L + F G S E + ++
Sbjct: 257 LGVILYELLTLHRPFKGPSQREIMQQVL 284
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 74.3 bits (183), Expect = 4e-14
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 32/214 (14%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLK-----MEKEKEGFPITSLREINTLLKAQHPNIVTVR 427
G++G V A+ K TDE+ A+K LK + + E +T R + L +HP + +
Sbjct: 6 GSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVE-CTMTEKRVLA--LAGKHPFLTQLH 62
Query: 428 EIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQ---VFIPGEVKCLMQQLLNAVAHLH 483
D++F VM+YV D+ ++ + F E+ + + LH
Sbjct: 63 SCF--QTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEI-------VLGLQFLH 113
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLARE---YGSPLKHY--TPIVVTLWYRSPELL 538
+ I++RDLK N+LL G +K+ DFG+ +E G + TP Y +PE+L
Sbjct: 114 ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPD-----YIAPEIL 168
Query: 539 LGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSD 572
+ Y +D W++G + E L + F G +
Sbjct: 169 SY-QPYGPAVDWWALGVLLYEMLAGQSPFEGDDE 201
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 73.0 bits (179), Expect = 6e-14
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 20/199 (10%)
Query: 368 NRIEEGTYGVVYRAKDKRTDEIVALKRLKMEK-EKEGFPITSLREINTLLKAQHPNIVTV 426
+++ G YG VY K+ VA+K LK + E E F L+E + + +HPN+V
Sbjct: 12 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEF----LKEAAVMKEIKHPNLV-- 65
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLM-QQLLNAVAHLHDN 485
+ + V + +I+ +++ + +L++ +R + + V M Q+ +A+ +L
Sbjct: 66 QLLGVCTREPPFYIITEFMTYG--NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK 123
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRSPELLLG 540
+HRDL N L+ ++KV DFGL+R Y + PI T +PE L
Sbjct: 124 NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT----APE-SLA 178
Query: 541 CKEYSTPIDMWSVGCIFAE 559
++S D+W+ G + E
Sbjct: 179 YNKFSIKSDVWAFGVLLWE 197
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 73.7 bits (181), Expect = 7e-14
Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 20/204 (9%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKMEK--EKEGFPITSLREINTLLKAQHPNIVTVREI 429
+G++G V A+ K TDE+ A+K LK + + + T + L A+HP + +
Sbjct: 5 KGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCC 64
Query: 430 VVGSNMDKIFIVMDYVEHDMKSLM-ETMRSKK-----QVFIPGEVKCLMQQLLNAVAHLH 483
D++F VM+YV + LM + RS+K F EV + LH
Sbjct: 65 F--QTKDRLFFVMEYV--NGGDLMFQIQRSRKFDEPRSRFYAAEVTLALM-------FLH 113
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
+ +++RDLK N+LL G K+ DFG+ +E T T Y +PE+L E
Sbjct: 114 RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQE-LE 172
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLF 567
Y +D W++G + E + +P F
Sbjct: 173 YGPSVDWWALGVLMYEMMAGQPPF 196
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 72.1 bits (177), Expect = 7e-14
Identities = 67/204 (32%), Positives = 94/204 (46%), Gaps = 31/204 (15%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKME---KEKEGFPITSLREINTLLKAQHPNIVT 425
+I +G +G VY+ K E VA+K + K F L+E L + HPNIV
Sbjct: 2 KIGKGNFGDVYKGVLKGNTE-VAVKTCRSTLPPDLKRKF----LQEAEILKQYDHPNIV- 55
Query: 426 VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA---HL 482
+ I V I+IVM+ V SL+ +R KK VK L+Q L+A A +L
Sbjct: 56 -KLIGVCVQKQPIYIVMELVPGG--SLLTFLRKKKNRL---TVKKLLQMSLDAAAGMEYL 109
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLARE-------YGSPLKHYTPIVVTLWYRSP 535
+HRDL N L+ +LK+ DFG++RE LK PI T +P
Sbjct: 110 ESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQ-IPIKWT----AP 164
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAE 559
E L Y++ D+WS G + E
Sbjct: 165 E-ALNYGRYTSESDVWSYGILLWE 187
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 72.4 bits (177), Expect = 1e-13
Identities = 52/202 (25%), Positives = 107/202 (52%), Gaps = 17/202 (8%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLK-AQHPN 422
F+ + + GTYG VY+ + +T ++ A+K + + ++E +EIN L K + H N
Sbjct: 8 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEE---EIKQEINMLKKYSHHRN 64
Query: 423 IVTVREIVVGSNM----DKIFIVMDYVEHDMKSLMETMRSKKQVFIPGE-VKCLMQQLLN 477
I T + N D++++VM++ S+ + +++ K + E + + +++L
Sbjct: 65 IATYYGAFIKKNPPGMDDQLWLVMEFC--GAGSVTDLIKNTKGNTLKEEWIAYICREILR 122
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
++HLH + ++HRD+K N+LL+ +K+ DFG++ + + + T ++ +PE
Sbjct: 123 GLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPE- 181
Query: 538 LLGCKE-----YSTPIDMWSVG 554
++ C E Y D+WS+G
Sbjct: 182 VIACDENPDATYDFKSDLWSLG 203
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 72.0 bits (176), Expect = 1e-13
Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E F L +I +G++G V++ D RT ++VA+K + +E+ ++ +EI L + P
Sbjct: 4 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQ-QEITVLSQCDSP 62
Query: 422 NIVTVREIVVGSNMD--KIFIVMDYVEHDMKSLMETMRSKKQVFIPG-----EVKCLMQQ 474
+ GS + K++I+M+Y+ S + PG ++ ++++
Sbjct: 63 YVTKY----YGSYLKDTKLWIIMEYLGGG---------SALDLLEPGPLDETQIATILRE 109
Query: 475 LLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRS 534
+L + +LH +HRD+K +N+LLS G +K+ DFG+A + V T ++ +
Sbjct: 110 ILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 169
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCMEP 565
PE++ Y + D+WS+G E EP
Sbjct: 170 PEVIKQ-SAYDSKADIWSLGITAIELAKGEP 199
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 72.3 bits (177), Expect = 1e-13
Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 363 EFKCLNRIE---EGTYGVV----YRAKDKRTDEIVALKRLKMEKEKEGFPITSL-REINT 414
E + L RI EG +G V Y + T E VA+K LK E G I L +EI
Sbjct: 2 EKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLK--PESGGNHIADLKKEIEI 59
Query: 415 LLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETM-RSKKQVFIPGEVKCLMQ 473
L H NIV + I + I ++M+++ SL E + R+K ++ + ++K +Q
Sbjct: 60 LRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSG--SLKEYLPRNKNKINLKQQLKYAVQ 117
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT-------PI 526
+ + +L +HRDL N+L+ +K+GDFGL + + ++YT P+
Sbjct: 118 -ICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPV 176
Query: 527 VVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
WY +PE L+ K Y D+WS G E L
Sbjct: 177 ---FWY-APECLIQSKFYIAS-DVWSFGVTLYELL 206
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 72.1 bits (177), Expect = 2e-13
Identities = 82/332 (24%), Positives = 136/332 (40%), Gaps = 95/332 (28%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E+F+ + I G YG VY + K T + A+K K+ K+ N +L+ Q
Sbjct: 1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMK--KINKQ------------NLILRNQIQ 46
Query: 422 NIVTVREI--------VVG-----SNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGE 467
+ R+I VV + +VM+YVE D +L++ + + +P +
Sbjct: 47 QVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNIGA-----LPVD 101
Query: 468 -VKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGL-------------- 512
+ + + A+ +LH+ I+HRDLK NLL++ G +K+ DFGL
Sbjct: 102 MARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYE 161
Query: 513 ------AREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPL 566
RE+ TP Y +PE++L + Y P+D W++G I EFL
Sbjct: 162 GHIEKDTREFLDKQVCGTP-----EYIAPEVILR-QGYGKPVDWWAMGIILYEFLVGCVP 215
Query: 567 FTGKSDLEQLSRIFKTMGTPNEKIWP-GFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTE 625
F G + E ++ ++ WP G LPA +
Sbjct: 216 FFGDTPEELFGQVIS-----DDIEWPEGDEALPADAQ----------------------- 247
Query: 626 LGYDLLCKFLTYDPVTRI---TADEALRHDYF 654
DL+ + L +P+ R+ A E +H +F
Sbjct: 248 ---DLISRLLRQNPLERLGTGGAFEVKQHRFF 276
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 71.6 bits (175), Expect = 2e-13
Identities = 54/204 (26%), Positives = 109/204 (53%), Gaps = 21/204 (10%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKM-EKEKEGFPITSLREINTLLK-AQHP 421
F+ + + GTYG VY+ + +T ++ A+K + + E E+E + EIN L K + H
Sbjct: 18 FELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKL----EINMLKKYSHHR 73
Query: 422 NIVT-----VREIVVGSNMDKIFIVMDYVEHDMKSLMETMR-SKKQVFIPGEVKCLMQQL 475
NI T +++ G + D++++VM++ S+ + ++ +K + + +++
Sbjct: 74 NIATYYGAFIKKSPPGHD-DQLWLVMEFC--GAGSVTDLVKNTKGNALKEDWIAYICREI 130
Query: 476 LNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSP 535
L +AHLH + ++HRD+K N+LL+ +K+ DFG++ + + + T ++ +P
Sbjct: 131 LRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAP 190
Query: 536 ELLLGCKE-----YSTPIDMWSVG 554
E ++ C E Y D+WS+G
Sbjct: 191 E-VIACDENPDATYDYRSDIWSLG 213
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 71.5 bits (175), Expect = 2e-13
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 372 EGTYGVV----YRAKDKRTDEIVALKRLKME---KEKEGFPITSLREINTLLKAQHPNIV 424
EG +G V Y + T E+VA+K LK E + G+ +EIN L H NIV
Sbjct: 14 EGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGW----KKEINILKTLYHENIV 69
Query: 425 TVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHD 484
+ + ++M+YV + SL + + K ++ QQ+ +A+LH
Sbjct: 70 KYKGCCSEQGGKGLQLIMEYVP--LGSLRDYL--PKHKLNLAQLLLFAQQICEGMAYLHS 125
Query: 485 NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHY-------TPIVVTLWYRSPEL 537
+HRDL N+LL + ++K+GDFGLA+ ++Y +P+ WY + E
Sbjct: 126 QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPV---FWY-AVEC 181
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFL 561
L K +S D+WS G E L
Sbjct: 182 LKENK-FSYASDVWSFGVTLYELL 204
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 70.8 bits (173), Expect = 2e-13
Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 26/207 (12%)
Query: 360 SVEEFKCLNRIEEGTYGVV----YRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTL 415
+++E K L I +G +G V YR VA+K +K + + F L E + +
Sbjct: 4 NMKELKLLQTIGKGEFGDVMLGDYRGNK------VAVKCIKNDATAQAF----LAEASVM 53
Query: 416 LKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQL 475
+ +H N+V + ++V ++IV +Y+ SL++ +RS+ + + G+ CL++
Sbjct: 54 TQLRHSNLVQLLGVIVEEK-GGLYIVTEYMAKG--SLVDYLRSRGRSVLGGD--CLLKFS 108
Query: 476 LN---AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWY 532
L+ A+ +L N +HRDL N+L+S + KV DFGL +E S T + W
Sbjct: 109 LDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS--TQDTGKLPVKW- 165
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAE 559
+PE L K++ST D+WS G + E
Sbjct: 166 TAPEALRE-KKFSTKSDVWSFGILLWE 191
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 71.1 bits (174), Expect = 2e-13
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 18/203 (8%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
++ L + G +GVV K + ++ +KM KE + E ++K H
Sbjct: 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVA----IKMIKEGSMSEDEFIEEAKVMMKLSHE 59
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
+V + V + I+IV +Y+ + L+ +R + F P ++ + + + +A+
Sbjct: 60 KLVQLYG--VCTKQRPIYIVTEYMSNG--CLLNYLREHGKRFQPSQLLEMCKDVCEGMAY 115
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRSPE 536
L +HRDL N L+ +G +KV DFGL+R EY S + P+ + PE
Sbjct: 116 LESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVR----WSPPE 171
Query: 537 LLLGCKEYSTPIDMWSVGCIFAE 559
+LL K +S+ D+W+ G + E
Sbjct: 172 VLLYSK-FSSKSDVWAFGVLMWE 193
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 70.8 bits (173), Expect = 3e-13
Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKM-----EKEKEGFPITSLR-EINTLLKAQHPNIVTV 426
G +G VY D T +A+K++ E KE + +L EI L +H IV
Sbjct: 13 GAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKE---VNALECEIQLLKNLRHDRIVQY 69
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNW 486
+ K+ I ++Y+ S+ + +++ + +Q+L V++LH N
Sbjct: 70 YGCLRDPEEKKLSIFVEYMPGG--SIKDQLKAYG-ALTENVTRRYTRQILQGVSYLHSNM 126
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREY------GSPLKHYTPIVVTLWYRSPELLLG 540
I+HRD+K +N+L G +K+GDFG ++ G+ +K T T ++ SPE++ G
Sbjct: 127 IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTG---TPYWMSPEVISG 183
Query: 541 CKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWP 592
+ Y D+WSV C E L +P + ++ E ++ IFK P + + P
Sbjct: 184 -EGYGRKADVWSVACTVVEMLTEKPPW---AEYEAMAAIFKIATQPTKPMLP 231
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 71.8 bits (176), Expect = 3e-13
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 10/219 (4%)
Query: 372 EGTYGVVYRAKDKR---TDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVRE 428
+G++G V+ + ++ A+K LK K + + E + L + HP IV +
Sbjct: 6 QGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHY 65
Query: 429 IVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWIL 488
K+++++D++ + T SK+ +F +VK + +L A+ HLH I+
Sbjct: 66 AF--QTEGKLYLILDFLR---GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGII 120
Query: 489 HRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPI 548
+RDLK N+LL G +K+ DFGL++E K T+ Y +PE ++ + ++
Sbjct: 121 YRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPE-VVNRRGHTQSA 179
Query: 549 DMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKT-MGTP 586
D WS G + E L F GK E ++ I K +G P
Sbjct: 180 DWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMP 218
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 71.5 bits (175), Expect = 3e-13
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 28/231 (12%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLK-----MEKEKEGFPITSLREINTLLKAQHPNIVTV 426
+G++G V A+ K E A+K LK ++ + E T + + L ++P + +
Sbjct: 5 KGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVE---CTMVEKRVLALAWENPFLTHL 61
Query: 427 REIVVGSNMDKIFIVMDYVEHDMKSLMETMRSK------KQVFIPGEVKCLMQQLLNAVA 480
+ +F VM+++ + LM ++ K + F E+ C +Q
Sbjct: 62 --YCTFQTKEHLFFVMEFL--NGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQ------- 110
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLG 540
LH I++RDLK N++L G +K+ DFG+ +E + T Y +PE+L G
Sbjct: 111 FLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQG 170
Query: 541 CKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIW 591
K Y+ +D WS G + E L + F G + E I + TP+ W
Sbjct: 171 LK-YTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESI--RVDTPHYPRW 218
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 70.5 bits (172), Expect = 3e-13
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 29/235 (12%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLR------EINTLLKAQHPNIVT 425
+G +G VY D T +A K+++ + E P TS EI L QH IV
Sbjct: 12 QGAFGRVYLCYDVDTGRELAAKQVQFDPES---PETSKEVSALECEIQLLKNLQHERIVQ 68
Query: 426 VREIVVGSNMDKIFIVMDY-----VEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
+ + I M+Y V+ +K+ S + + +Q+L ++
Sbjct: 69 YYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKY--------TRQILEGMS 120
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT---PIVVTLWYRSPEL 537
+LH N I+HRD+K +N+L G +K+GDFG ++ + T + T ++ SPE+
Sbjct: 121 YLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEV 180
Query: 538 LLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWP 592
+ G + Y D+WS+GC E L +P + ++ E ++ IFK P P
Sbjct: 181 ISG-EGYGRKADVWSLGCTVVEMLTEKPPW---AEYEAMAAIFKIATQPTNPQLP 231
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 71.5 bits (175), Expect = 4e-13
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREI 429
I +GT+G VY+ + K T I A+K L S +EI + K + + + R I
Sbjct: 1 IGKGTFGQVYQVRKKDTRRIYAMKVL------------SKKEI--VAKKEVAHTIGERNI 46
Query: 430 VVGSNMDKI-FIV---------MD-YVEHDMKSLMETM--RSKKQVFIPGEVKCLMQQLL 476
+V + +D+ FIV D Y+ D S E K+ F K + +L+
Sbjct: 47 LVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYIAELV 106
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
A+ HLH I++RDLK N+LL G + + DFGL++ + K T Y +PE
Sbjct: 107 LALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPE 166
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLC 562
+LL K Y+ +D WS+G + E C
Sbjct: 167 VLLDEKGYTKHVDFWSLGVLVFEMCC 192
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 71.0 bits (174), Expect = 4e-13
Identities = 55/200 (27%), Positives = 99/200 (49%), Gaps = 23/200 (11%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKME----KEKEGFPITSLREINTLLKAQHPNIVTVR 427
+GT+G V ++K T + A+K LK E K++ +T R L +HP + ++
Sbjct: 5 KGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESR---VLQNTRHPFLTALK 61
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWI 487
D++ VM+Y + S+++VF + ++++A+ +LH +
Sbjct: 62 YSF--QTHDRLCFVMEYAN---GGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDV 116
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLARE---YGSPLKHY--TPIVVTLWYRSPELLLGCK 542
++RDLK NL+L G +K+ DFGL +E G+ +K + TP Y +PE+L
Sbjct: 117 VYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTP-----EYLAPEVLED-N 170
Query: 543 EYSTPIDMWSVGCIFAEFLC 562
+Y +D W +G + E +C
Sbjct: 171 DYGRAVDWWGLGVVMYEMMC 190
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 71.4 bits (175), Expect = 5e-13
Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 360 SVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQ 419
S+ E + +NRI G G VY+ + T + ALK + E + REI L
Sbjct: 72 SLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHE-DTVRRQICREIEILRDVN 130
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
HPN+V ++ + +I ++++++ D SL E + F+ + +Q+L+ +
Sbjct: 131 HPNVVKCHDMF--DHNGEIQVLLEFM--DGGSL-EGTHIADEQFLAD----VARQILSGI 181
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL- 538
A+LH I+HRD+K SNLL++ +K+ DFG++R + V T+ Y SPE +
Sbjct: 182 AYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERIN 241
Query: 539 --LGCKEYSTPI-DMWSVGCIFAEF 560
L Y D+WS+G EF
Sbjct: 242 TDLNHGAYDGYAGDIWSLGVSILEF 266
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 69.7 bits (171), Expect = 6e-13
Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLKA 418
E K ++ G +G V+ T + VA+K LK M E F L+E + K
Sbjct: 6 ESLKLERKLGAGQFGEVWMGTWNGTTK-VAVKTLKPGTMSPE--AF----LQEAQIMKKL 58
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSK--KQVFIPGEVKCLMQQLL 476
+H +V + + S + I+IV +Y+ SL++ ++S K++ +P V + Q+
Sbjct: 59 RHDKLVQLYAVC--SEEEPIYIVTEYMSKG--SLLDFLKSGEGKKLRLPQLVD-MAAQIA 113
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLW 531
+A+L +HRDL N+L+ + K+ DFGLAR EY + PI T
Sbjct: 114 EGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWT-- 171
Query: 532 YRSPELLLGCKEYSTPIDMWSVGCIFAEFL----CMEPLFTGKSDLEQLSR 578
+PE ++ D+WS G + E + P T + LEQ+ R
Sbjct: 172 --APEAAN-YGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVER 219
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 70.6 bits (173), Expect = 7e-13
Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 21/213 (9%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKMEK--EKEGFPITSLREINTLLKAQHPNIVTVREI 429
+G++G V A+ K T+E A+K LK + E + T + L +HP + +
Sbjct: 5 KGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHL--F 62
Query: 430 VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQV------FIPGEVKCLMQQLLNAVAHLH 483
+ +F VM+Y+ + LM ++S + F E+ C +Q LH
Sbjct: 63 CTFQTKEHLFFVMEYL--NGGDLMFHIQSSGRFDEARARFYAAEIICGLQ-------FLH 113
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
I++RDLK N+LL G +K+ DFG+ +E + + T Y +PE+L G K
Sbjct: 114 KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQK- 172
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQL 576
Y+ +D WS G + E L + F G+ D ++L
Sbjct: 173 YNESVDWWSFGVLLYEMLIGQSPFHGE-DEDEL 204
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 70.0 bits (171), Expect = 9e-13
Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 12/215 (5%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKME---KEKEGFPITSLREINTLLK-AQHPNIVT 425
I +G++G V A+ K ++ A+K L+ + K+KE I S R N LLK +HP +V
Sbjct: 3 IGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSER--NVLLKNVKHPFLVG 60
Query: 426 VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
+ DK++ V+DY+ + L ++ +++ F+ + ++ +A+ +LH
Sbjct: 61 LH--FSFQTADKLYFVLDYI--NGGELFYHLQ-RERCFLEPRARFYAAEIASALGYLHSL 115
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYS 545
I++RDLK N+LL +G + + DFGL +E + T Y +PE+L + Y
Sbjct: 116 NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHK-QPYD 174
Query: 546 TPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIF 580
+D W +G + E L P F ++ E I
Sbjct: 175 RTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNIL 209
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 68.9 bits (169), Expect = 1e-12
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 17/220 (7%)
Query: 369 RIEEGTYGVVYRA--KDKRTDEI-VALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVT 425
++ +G++GVV R I VA+K LK +K + L+E + H N++
Sbjct: 2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSD-IMDDFLKEAAIMHSLDHENLIR 60
Query: 426 VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ-QLLNAVAHLHD 484
+ +V+ + +V + + SL++ +R C Q+ N + +L
Sbjct: 61 LYGVVLT---HPLMMVTELAP--LGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLES 115
Query: 485 NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTP---IVVTLWYRSPELLLGC 541
+HRDL N+LL+ +K+GDFGL R HY + V + +PE L
Sbjct: 116 KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPE-SLRT 174
Query: 542 KEYSTPIDMWSVG-CIFAEF-LCMEPLFTGKSDLEQLSRI 579
+ +S D+W G ++ F EP + G S + L +I
Sbjct: 175 RTFSHASDVWMFGVTLWEMFTYGEEP-WAGLSGSQILKKI 213
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 69.8 bits (171), Expect = 1e-12
Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 31/242 (12%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKME---KEKEGFPITSLREINTLLKAQ 419
+F+ + G++G V AK K T E A+K LK K K+ + +E + L++
Sbjct: 19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHV--AQEKSILMELS 76
Query: 420 HPNIVTVREIVVGSNMD--KIFIVMDYVEHDMKSLMETMRSKKQVFIPGEV-KCLMQQLL 476
HP IV + + S D +++ ++++V + + T K F P +V K +L+
Sbjct: 77 HPFIVNM----MCSFQDENRVYFLLEFV---VGGELFTHLRKAGRF-PNDVAKFYHAELV 128
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
A +LH I++RDLK NLLL ++G +KV DFG A++ P + +T + T Y +PE
Sbjct: 129 LAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKV--PDRTFT-LCGTPEYLAPE 185
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSK 596
++ K + +D W++G + EF+ P F + RI+ EKI G K
Sbjct: 186 VIQS-KGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPF----RIY-------EKILAGRLK 233
Query: 597 LP 598
P
Sbjct: 234 FP 235
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 69.3 bits (169), Expect = 1e-12
Identities = 65/258 (25%), Positives = 123/258 (47%), Gaps = 31/258 (12%)
Query: 348 LPPYLPAIQGCRSVEE----FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLK----MEK 399
L PY ++ G S+ + ++ + I +GTYG VY+ +K+ + A+K L +++
Sbjct: 4 LFPYNSSMLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDE 63
Query: 400 EKEGFPITSLREINTLLK-AQHPNIVTVREIVVGSNM---DKIFIVMDYVEH-DMKSLME 454
E E E N L HPN+V + ++ ++++V++ + L++
Sbjct: 64 EIEA-------EYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVK 116
Query: 455 TMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR 514
+ Q + ++ L + HLH+N I+HRD+K +N+LL+ G +K+ DFG++
Sbjct: 117 GLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSA 176
Query: 515 EYGSPLKHYTPIVVTLWYRSPELLLGCKE-----YSTPIDMWSVGCIFAEFLCME-PLFT 568
+ S V T ++ +PE ++ C++ Y D+WS+G E + PLF
Sbjct: 177 QLTSTRLRRNTSVGTPFWMAPE-VIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLF- 234
Query: 569 GKSDLEQLSRIFKTMGTP 586
D+ + +FK P
Sbjct: 235 ---DMHPVKTLFKIPRNP 249
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 70.0 bits (171), Expect = 2e-12
Identities = 80/325 (24%), Positives = 136/325 (41%), Gaps = 61/325 (18%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
F L G G + D +T E V +K ++ LR IN HP+I
Sbjct: 94 FSILETFTPGAEGFAFACIDNKTCEHVVIK--AGQRGGTATEAHILRAIN------HPSI 145
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIP-GEVKCLMQQLLNAVAHL 482
+ ++ + +++ + D+ + R+ I ++ + + +L A+ +L
Sbjct: 146 IQLKGTFTYNKF--TCLILPRYKTDLYCYLAAKRN-----IAICDILAIERSVLRAIQYL 198
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLA---------REYGSPLKHYTPIVVTLWYR 533
H+N I+HRD+K N+ ++H G + +GDFG A + YG T+
Sbjct: 199 HENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYG--------WAGTIATN 250
Query: 534 SPELLLGCKEYSTPIDMWSVGCIFAEF-LCMEPLFT-----GKSDLE-QLSRIFKTMGT- 585
+PE LL Y +D+WS G + E C + LF G D + Q+ I + GT
Sbjct: 251 APE-LLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTH 309
Query: 586 PNE----------KIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFL 635
PNE +I+ G +K + + + + N+ L +L Y L+CK L
Sbjct: 310 PNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELP--------IDLEY-LICKML 360
Query: 636 TYDPVTRITADEALRHDYFSESPLP 660
+D R +A+ L F + P P
Sbjct: 361 AFDAHHRPSAEALLDFAAFQDIPDP 385
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 69.2 bits (169), Expect = 2e-12
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKME---KEKEGFPITSLREINTLLKA-QHPNIVT 425
I +G++G V AK K A+K L+ + K+KE I + R N LLK +HP +V
Sbjct: 3 IGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAER--NVLLKNLKHPFLVG 60
Query: 426 VREIVVGSNMDKIFIVMDYVE------HDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
+ +K++ V+DYV H + + F EV A+
Sbjct: 61 LHYSF--QTAEKLYFVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVAS-------AI 109
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+LH I++RDLK N+LL +G + + DFGL +E P + + T Y +PE+L
Sbjct: 110 GYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLR 169
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQL 576
+ Y +D W +G + E L P F + D+ Q+
Sbjct: 170 K-EPYDRTVDWWCLGAVLYEMLYGLPPFYSR-DVSQM 204
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 68.8 bits (168), Expect = 2e-12
Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 28/220 (12%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLK-----MEKEKEGFPITSLREINTL-LKAQHPNIVT 425
+G++G V+ A+ K T++ A+K LK M+ + E ++ E L L +HP +
Sbjct: 5 KGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVE----CTMVEKRVLSLAWEHPFLTH 60
Query: 426 VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRS------KKQVFIPGEVKCLMQQLLNAV 479
+ + +F VM+Y+ + LM ++S + F E+ C +Q
Sbjct: 61 L--YCTFQTKENLFFVMEYL--NGGDLMFHIQSCHKFDLPRATFYAAEIICGLQ------ 110
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
LH I++RDLK N+LL G +K+ DFG+ +E T Y +PE+LL
Sbjct: 111 -FLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILL 169
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
G K Y+T +D WS G + E L + F G + E I
Sbjct: 170 GQK-YNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSI 208
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 68.6 bits (167), Expect = 3e-12
Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 13/195 (6%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKME----KEKEGFPITSLREINTLLKAQHPNIVTVR 427
+GT+G V ++K + + A+K LK E K++ +T R L +HP + +++
Sbjct: 5 KGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESR---VLKNTRHPFLTSLK 61
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWI 487
D++ VM+YV + S+++VF + ++++A+ +LH I
Sbjct: 62 YSF--QTKDRLCFVMEYVN---GGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKI 116
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTP 547
++RDLK NL+L G +K+ DFGL +E + T Y +PE+L +Y
Sbjct: 117 VYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLED-NDYGRA 175
Query: 548 IDMWSVGCIFAEFLC 562
+D W +G + E +C
Sbjct: 176 VDWWGLGVVMYEMMC 190
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 68.1 bits (166), Expect = 5e-12
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 14/214 (6%)
Query: 363 EFKCLNRIEEGTYGVVY---RAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTL 415
F+ L + G YG V+ + T ++ A+K L+ ++K K + R +
Sbjct: 1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEH 60
Query: 416 LKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQL 475
++ Q P +VT+ K+ +++DYV M T ++ F EV+ ++
Sbjct: 61 VR-QSPFLVTLHYAF--QTEAKLHLILDYVS---GGEMFTHLYQRDNFSEDEVRFYSGEI 114
Query: 476 LNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT-PIVVTLWYRS 534
+ A+ HLH I++RD+K N+LL G + + DFGL++E+ S K T T+ Y +
Sbjct: 115 ILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMA 174
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFT 568
PE++ G + +D WS+G + E L FT
Sbjct: 175 PEIIRGKGGHGKAVDWWSLGILIFELLTGASPFT 208
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 69.0 bits (168), Expect = 6e-12
Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 40/347 (11%)
Query: 361 VEEFKCLNRIEEGTYGVVY--------------RAKDKRTDEIVALKRLKMEKEKEGFPI 406
+ F+ ++ + G +G ++ R + +RL ++ K G
Sbjct: 147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRA 206
Query: 407 TSL--REINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLM--ETMRSKKQV 462
EI L + H NI+ + EI+ + +++ + D+ S M E K +
Sbjct: 207 AIQLENEILALGRLNHENILKIEEIL--RSEANTYMITQKYDFDLYSFMYDEAFDWKDRP 264
Query: 463 FIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKH 522
+ + + +M+QLL AV ++HD ++HRD+K N+ L+ G + +GDFG A + +
Sbjct: 265 LL-KQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREA 323
Query: 523 YT-PIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCME--PLF-TGKSDLEQLSR 578
+ V T+ SPE+L G Y D+WS G I + L + P+ G +QL +
Sbjct: 324 FDYGWVGTVATNSPEILAG-DGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLK 382
Query: 579 IFKTMGTPNEKIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDL-----LCK 633
I ++ +E+ KL + AE + G ++ LG L K
Sbjct: 383 IIDSLSVCDEEFPDPPCKL--FDYIDSAEIDHAG----HSVPPLIRNLGLPADFEYPLVK 436
Query: 634 FLTYDPVTRITADEALRHDYFSESPLPIDPAMFPTWPAKSELAHKKA 680
LT+D R A E L FS + + KS AH K
Sbjct: 437 MLTFDWHLRPGAAELLALPLFSAE---EEEEILFIHGLKSGAAHFKP 480
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 66.8 bits (163), Expect = 6e-12
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 21/224 (9%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKM-EKEKEGFPITSLREINTLLKAQHP 421
E + + G +GVV+ K R VA+K + +E F + E ++K HP
Sbjct: 5 ELTFMKELGSGQFGVVHLGK-WRAQIKVAIKAINEGAMSEEDF----IEEAKVMMKLSHP 59
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
+V + V + ++IV +++E+ L+ +R ++ + + Q + + +
Sbjct: 60 KLVQLYG--VCTQQKPLYIVTEFMENG--CLLNYLRQRQGKLSKDMLLSMCQDVCEGMEY 115
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRSPE 536
L N +HRDL N L+S G++KV DFG+ R EY S P+ + PE
Sbjct: 116 LERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVK----WSPPE 171
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFLCMEPL-FTGKSDLEQLSRI 579
+ K YS+ D+WS G + E + F KS+ E + I
Sbjct: 172 VFNFSK-YSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMI 214
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 66.8 bits (163), Expect = 7e-12
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRL--KMEKEKEGFPITSLREINTLLKAQHPNIVTVR 427
+ +G +G V + K T ++ A K+L K K+++G + +L E L K IV++
Sbjct: 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQM-ALNEKKILEKVSSRFIVSLA 59
Query: 428 EIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSK-----KQVFIPGEVKCLMQQLLNAVAH 481
D + +VM + D+K + + + +F ++ C ++ H
Sbjct: 60 YAF--ETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLE-------H 110
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY--GSPLKHYTPIVVTLWYRSPELLL 539
LH I++RDLK N+LL G +++ D GLA E G +K T Y +PE+L
Sbjct: 111 LHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGR---AGTPGYMAPEVLQ 167
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCMEPLFTG---KSDLEQLSRIFKTM 583
G + Y +D +++GC E + F K + E+L R M
Sbjct: 168 G-EVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEM 213
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 66.7 bits (163), Expect = 8e-12
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 28/237 (11%)
Query: 360 SVEEFKCLNRIEEGTYGVVYRAKDKRTDE-----IVALKRLKMEKEKEGFPITSLREINT 414
+++E L R G +G V+ AK K +E +V +K L+ K+ E RE++
Sbjct: 6 NLQEITTLGR---GEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD-ENLQSEFRRELDM 61
Query: 415 LLKAQHPNIVT----VREIVVGSNMDKIFIVMDYVE-HDMKSLMETMRSKKQVFIPG--- 466
K H N+V RE + +++++Y + D+K + +SK + P
Sbjct: 62 FRKLSHKNVVRLLGLCRE------AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLS 115
Query: 467 --EVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE-YGSPLKHY 523
+ L Q+ + HL + +HRDL N L+S + +KV L+++ Y S
Sbjct: 116 TKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKL 175
Query: 524 TPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPL-FTGKSDLEQLSRI 579
++ L + +PE + ++ST D+WS G + E L F G SD E L+R+
Sbjct: 176 RNALIPLRWLAPEAVQE-DDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRL 231
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 69.1 bits (169), Expect = 1e-11
Identities = 64/208 (30%), Positives = 95/208 (45%), Gaps = 24/208 (11%)
Query: 386 TDEIVALKRLKMEKEKEGFPITSL-REINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDY 444
T VA+K L+ + +E RE + HPNIV + + +F V +Y
Sbjct: 2 TGHEVAIKLLRTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPP-GLLFAVFEY 60
Query: 445 VEHDMKSLMETMRSKKQ---VFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSH 501
V T+R GE LM Q+L+A+A H+ I+HRDLK N+++S
Sbjct: 61 VPG------RTLREVLAADGALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQ 114
Query: 502 RGI---LKVGDFGL------AREYG-SPLKHYTPIVVTLWYRSPELLLGCKEYSTP-IDM 550
G+ KV DFG+ R+ + L T ++ T Y +PE L G E TP D+
Sbjct: 115 TGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAPEQLRG--EPVTPNSDL 172
Query: 551 WSVGCIFAEFLCMEPLFTGKSDLEQLSR 578
++ G IF E L + + G S E L +
Sbjct: 173 YAWGLIFLECLTGQRVVQGASVAEILYQ 200
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 65.8 bits (161), Expect = 1e-11
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 36/204 (17%)
Query: 368 NRIEEGTYGVV----YRAKDKRTDEIVALKRLKMEKEKEG---FPITSLREINTLLKAQH 420
+ G +G V Y K + E VA+K LK E G F LRE + + + H
Sbjct: 1 KELGHGNFGSVVKGVYLMKSGKEVE-VAVKTLKQEHIAAGKKEF----LREASVMAQLDH 55
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA 480
P IV + + G + + +VM+ + L++ ++ K++ ++K L Q+ +A
Sbjct: 56 PCIVRLIGVCKG---EPLMLVMELAP--LGPLLKYLK-KRREIPVSDLKELAHQVAMGMA 109
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT-------PIVVTLWYR 533
+L +HRDL N+LL +R K+ DFG++R G+ +Y P+ WY
Sbjct: 110 YLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLK---WY- 165
Query: 534 SPELLLGCKEY---STPIDMWSVG 554
+PE C Y S+ D+WS G
Sbjct: 166 APE----CINYGKFSSKSDVWSYG 185
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 66.6 bits (162), Expect = 1e-11
Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 12/215 (5%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKME---KEKEGFPITSLREINTLLK-AQHPNIVT 425
I +G++G V AK K + A+K L+ + KE I + R N LLK +HP +V
Sbjct: 3 IGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAER--NVLLKNVKHPFLVG 60
Query: 426 VREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
+ +K++ V+D+V + L ++ +++ F + ++ +A+ +LH
Sbjct: 61 LHYSF--QTTEKLYFVLDFV--NGGELFFHLQ-RERSFPEPRARFYAAEIASALGYLHSI 115
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYS 545
I++RDLK N+LL +G + + DFGL +E + T T Y +PE++ + Y
Sbjct: 116 NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRK-QPYD 174
Query: 546 TPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIF 580
+D W +G + E L P F + E I
Sbjct: 175 NTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNIL 209
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 65.9 bits (161), Expect = 1e-11
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Query: 359 RSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKA 418
R EEF ++ G +G V+ K VA+K LK + + E+ L +
Sbjct: 3 RPREEFTLERKLGSGYFGEVWEGLWKNRVR-VAIKILKSDDLLKQQDFQK--EVQALKRL 59
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKK-QVFIPGEVKCLMQQLLN 477
+H +++++ + + ++I+ + +E SL+ +RS + QV + + Q+
Sbjct: 60 RHKHLISLFAVCSVG--EPVYIITELMEKG--SLLAFLRSPEGQVLPVASLIDMACQVAE 115
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYR--SP 535
+A+L + +HRDL N+L+ + KV DFGLAR + Y + Y+ +P
Sbjct: 116 GMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDV--YLSSDKKIPYKWTAP 173
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAE 559
E +ST D+WS G + E
Sbjct: 174 E-AASHGTFSTKSDVWSFGILLYE 196
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 66.7 bits (163), Expect = 1e-11
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 36/233 (15%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKME------------KEKEGFPITSLR 410
+F L + +G++G V A+ K TDE+ A+K LK + EK + +L
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKR---VLALP 57
Query: 411 EINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHD--MKSLMETMRSKK--QVFIPG 466
L H T MD+++ VM+YV M + + + K+ VF
Sbjct: 58 GKPPFLTQLHSCFQT---------MDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAA 108
Query: 467 EVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPI 526
E+ + LH I++RDLK N++L G +K+ DFG+ +E K
Sbjct: 109 EIAI-------GLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTF 161
Query: 527 VVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
T Y +PE++ + Y +D W+ G + E L +P F G+ + E I
Sbjct: 162 CGTPDYIAPEIIA-YQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSI 213
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 66.6 bits (162), Expect = 1e-11
Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 12/208 (5%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLK--AQHPNIVTVR 427
I G+Y V + K+T+ I A+K +K E + I ++ + + + HP +V +
Sbjct: 3 IGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLH 62
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGE-VKCLMQQLLNAVAHLHDNW 486
++F V++YV + LM M+ +++ +P E + ++ A+ +LH+
Sbjct: 63 SCF--QTESRLFFVIEYV--NGGDLMFHMQRQRK--LPEEHARFYSAEISLALNYLHERG 116
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
I++RDLK N+LL G +K+ D+G+ +E P + T Y +PE+L G ++Y
Sbjct: 117 IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRG-EDYGF 175
Query: 547 PIDMWSVGCIFAEFLCMEPLF--TGKSD 572
+D W++G + E + F G SD
Sbjct: 176 SVDWWALGVLMFEMMAGRSPFDIVGSSD 203
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 67.1 bits (164), Expect = 1e-11
Identities = 79/306 (25%), Positives = 121/306 (39%), Gaps = 50/306 (16%)
Query: 360 SVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL-KMEKEKEGFPITSLREINTLLKA 418
E+F + I G +G V + K + ++ A+K L K E K E + + A
Sbjct: 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHA 100
Query: 419 QHPNIVTVREIVVGSNMDK-IFIVMDYVEH-DMKSLMET--MRSKKQVFIPGEVKCLMQQ 474
IV ++ DK +++VM+Y+ D+ +LM + K F EV
Sbjct: 101 NSEWIV---QLHYAFQDDKYLYMVMEYMPGGDLVNLMSNYDIPEKWARFYTAEV------ 151
Query: 475 LLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSP-LKHYTPIVVTLWYR 533
+ A+ +H +HRD+K N+LL G LK+ DFG + + + V T Y
Sbjct: 152 -VLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYI 210
Query: 534 SPELLL---GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKI 590
SPE+L G Y D WSVG E L + F S + S+I + K
Sbjct: 211 SPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIM------DHK- 263
Query: 591 WPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVT--RITADEA 648
+TF + + ++ DL+C FLT V R DE
Sbjct: 264 ----------NSLTFPDDIEI------------SKQAKDLICAFLTDREVRLGRNGVDEI 301
Query: 649 LRHDYF 654
H +F
Sbjct: 302 KSHPFF 307
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 65.4 bits (159), Expect = 2e-11
Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 27/229 (11%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVV 431
+G +G V++ K VA+K K + +E I L E L + HPNIV + I V
Sbjct: 5 KGNFGEVFKGTLKDKTP-VAVKTCKEDLPQE-LKIKFLSEARILKQYDHPNIVKL--IGV 60
Query: 432 GSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA---VAHLHDNWIL 488
+ I+IVM+ V + +R KK + K L++ L+A +A+L +
Sbjct: 61 CTQRQPIYIVMELVPGG--DFLSFLRKKKDEL---KTKQLVKFALDAAAGMAYLESKNCI 115
Query: 489 HRDLKTSNLLLSHRGILKVGDFGLARE-----YGSPLKHYTPIVVTLWYRSPELLLGCKE 543
HRDL N L+ +LK+ DFG++R+ Y S PI T +PE L
Sbjct: 116 HRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWT----APE-ALNYGR 170
Query: 544 YSTPIDMWSVGCI----FAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNE 588
YS+ D+WS G + F+ +C P T + EQ+ + ++ M P +
Sbjct: 171 YSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYR-MSCPQK 218
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 65.6 bits (160), Expect = 2e-11
Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 15/243 (6%)
Query: 364 FKCLNRIEEGTYGVVY---RAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTLL 416
F+ L + G YG V+ + ++ A+K LK ++K K + R++ +
Sbjct: 2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAV 61
Query: 417 KAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
+ + P +VT+ K+ +++DYV + T +++ F EV+ + +++
Sbjct: 62 R-RCPFLVTLHYAFQTDT--KLHLILDYVN---GGELFTHLYQREHFTESEVRVYIAEIV 115
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT-PIVVTLWYRSP 535
A+ HLH I++RD+K N+LL G + + DFGL++E+ + + T+ Y +P
Sbjct: 116 LALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAP 175
Query: 536 ELLLGCKE-YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPGF 594
E++ G + +D WS+G + E L FT + S I + +
Sbjct: 176 EVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTM 235
Query: 595 SKL 597
S
Sbjct: 236 SAE 238
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 66.2 bits (161), Expect = 2e-11
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 26/230 (11%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEK--EKEGFPITSLREINTLLKAQH 420
+F L + +G++G V A+ K TDE+ A+K LK + + + T + + L +
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKP 60
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVEHD--MKSLMETMRSKK--QVFIPGEVKCLMQQLL 476
P + + MD+++ VM+YV M + + R K+ VF E+
Sbjct: 61 PFLTQLHSCF--QTMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAI------ 112
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY---GSPLKHY--TPIVVTLW 531
+ LH I++RDLK N++L G +K+ DFG+ +E G K + TP
Sbjct: 113 -GLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPD----- 166
Query: 532 YRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFK 581
Y +PE ++ + Y +D W+ G + E L + F G+ + E I +
Sbjct: 167 YIAPE-IIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIME 215
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 65.6 bits (160), Expect = 3e-11
Identities = 58/218 (26%), Positives = 107/218 (49%), Gaps = 17/218 (7%)
Query: 372 EGTYGVVYRAK---DKRTDEIVALKRLKMEKEKEGFPIT--SLREINTLLKAQHPNIVTV 426
+G YG V++ + T +I A+K LK T + E N L +HP IV
Sbjct: 6 KGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIV-- 63
Query: 427 REIVVGSNMD-KIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDN 485
+++ K++++++Y+ + M R + +F+ + ++ A+ HLH
Sbjct: 64 -DLIYAFQTGGKLYLILEYLSGG-ELFMHLER--EGIFMEDTACFYLSEISLALEHLHQQ 119
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLARE--YGSPLKHYTPIVVTLWYRSPELLLGCKE 543
I++RDLK N+LL +G +K+ DFGL +E + + H T+ Y +PE+L+
Sbjct: 120 GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTH--TFCGTIEYMAPEILMRSG- 176
Query: 544 YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFK 581
+ +D WS+G + + L P FT ++ + + +I K
Sbjct: 177 HGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILK 214
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 65.8 bits (160), Expect = 3e-11
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKME----KEKEGFPITSLREINTLLKAQHPNIVTVR 427
+GT+G V ++K T A+K L+ E K++ +T R L +HP + ++
Sbjct: 5 KGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESR---VLQNTRHPFLTALK 61
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWI 487
D++ VM+Y + S+++VF + ++++A+ +LH +
Sbjct: 62 YAF--QTHDRLCFVMEYAN---GGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDV 116
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTP 547
++RD+K NL+L G +K+ DFGL +E S T Y +PE+L +Y
Sbjct: 117 VYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED-NDYGRA 175
Query: 548 IDMWSVGCIFAEFLC 562
+D W +G + E +C
Sbjct: 176 VDWWGLGVVMYEMMC 190
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 64.6 bits (157), Expect = 3e-11
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 22/205 (10%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITS--LREINTLLKAQ 419
E + I G +G+V+ + VA+K ++ EG + E ++K
Sbjct: 4 SELTLVQEIGSGQFGLVWLGYWLEKRK-VAIKTIR-----EGAMSEEDFIEEAQVMMKLS 57
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
HP +V + + + I +V +++EH L + +R+++ F + + + +
Sbjct: 58 HPKLVQLYGVCTERS--PICLVFEFMEHG--CLSDYLRAQRGKFSQETLLGMCLDVCEGM 113
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRS 534
A+L + ++HRDL N L+ ++KV DFG+ R +Y S P+ + S
Sbjct: 114 AYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVK----WSS 169
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAE 559
PE+ K YS+ D+WS G + E
Sbjct: 170 PEVFSFSK-YSSKSDVWSFGVLMWE 193
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 64.3 bits (156), Expect = 3e-11
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 16/197 (8%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVRE 428
RI G +G V+ + + + VA+K + E L+E L + HPNIV R
Sbjct: 2 RIGRGNFGEVFSGRLRADNTPVAVKSCR-ETLPPDLKAKFLQEARILKQYSHPNIV--RL 58
Query: 429 IVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVA---HLHD 484
I V + I+IVM+ V+ D + + T + +V K L+Q + NA A +L
Sbjct: 59 IGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKV------KELIQMVENAAAGMEYLES 112
Query: 485 NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIV--VTLWYRSPELLLGCK 542
+HRDL N L++ + +LK+ DFG++RE + T + + + + +PE L
Sbjct: 113 KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPE-ALNYG 171
Query: 543 EYSTPIDMWSVGCIFAE 559
YS+ D+WS G + E
Sbjct: 172 RYSSESDVWSFGILLWE 188
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 63.8 bits (155), Expect = 5e-11
Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVRE 428
I EG +G V + + T + VA+K +K + + F L E + K H N+V +
Sbjct: 13 IIGEGEFGAVLQGE--YTGQKVAVKNIKCDVTAQAF----LEETAVMTKLHHKNLVRLLG 66
Query: 429 IVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN---AVAHLHDN 485
+++ + + +IVM+ + +L+ +R++ + + V L+Q L+ + +L
Sbjct: 67 VILHNGL---YIVMELMSKG--NLVNFLRTRGRALVS--VIQLLQFSLDVAEGMEYLESK 119
Query: 486 WILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYS 545
++HRDL N+L+S G+ KV DFGLAR + + W +PE L K++S
Sbjct: 120 KLVHRDLAARNILVSEDGVAKVSDFGLAR--VGSMGVDNSKLPVKW-TAPEALKH-KKFS 175
Query: 546 TPIDMWSVGCIFAE 559
+ D+WS G + E
Sbjct: 176 SKSDVWSYGVLLWE 189
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 64.0 bits (156), Expect = 7e-11
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 48/221 (21%)
Query: 370 IEEGTYGVVYRAK-----DKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQHP 421
+ EG +G V+ + + E+VA+K LK ++ F RE L QH
Sbjct: 13 LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDF----EREAELLTNFQHE 68
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEH-DMKSL----------METMRSKKQVFIPGEVKC 470
NIV + D +V +Y+EH D+ +++ S ++
Sbjct: 69 NIVKFYGVCTEG--DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQ 126
Query: 471 LMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTL 530
+ Q+ + + +L +HRDL T N L+ + ++K+GDFG++R+ + T
Sbjct: 127 IAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRD----------VYTTD 176
Query: 531 WYR------------SPELLLGCKEYSTPIDMWSVGCIFAE 559
+YR PE ++ ++++T D+WS G + E
Sbjct: 177 YYRVGGHTMLPIRWMPPESIM-YRKFTTESDVWSFGVVLWE 216
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 63.5 bits (155), Expect = 1e-10
Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 47/243 (19%)
Query: 360 SVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQ 419
+ + + L I GT G VY+ + K+T ++A+K+++ KE L +++ +LK+
Sbjct: 13 DLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENK-RILMDLDVVLKSH 71
Query: 420 H-PNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ-QLLN 477
P IV + ++ D +FI M+ M + ++ + + Q IP ++ M ++
Sbjct: 72 DCPYIVKCYGYFI-TDSD-VFICMEL----MSTCLDKLLKRIQGPIPEDILGKMTVAIVK 125
Query: 478 AVAHLHDNW-ILHRDLKTSNLLLSHRGILKVGDFGLA----------REYGSPLKHYTPI 526
A+ +L + ++HRD+K SN+LL G +K+ DFG++ R G
Sbjct: 126 ALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAA------ 179
Query: 527 VVTLWYRSPELL---LGCKEYSTPIDMWSVGCIFAEFLCMEPLFTG-------KSDLEQL 576
Y +PE + +Y D+WS+G E L TG K++ E L
Sbjct: 180 -----YMAPERIDPPDPNPKYDIRADVWSLGISLVE------LATGQFPYKNCKTEFEVL 228
Query: 577 SRI 579
++I
Sbjct: 229 TKI 231
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 63.5 bits (154), Expect = 1e-10
Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 27/236 (11%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTLLKA--QHPNI 423
I +GTYG V++ +K+ A+K L +++E E E N +LKA HPN+
Sbjct: 26 IGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEA-------EYN-ILKALSDHPNV 77
Query: 424 VTVREIVVGS---NMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
V + N D++++V++ + L++ + + + ++ + L +
Sbjct: 78 VKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGL 137
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
HLH N +HRD+K +N+LL+ G +K+ DFG++ + S V T ++ +PE ++
Sbjct: 138 QHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPE-VI 196
Query: 540 GCKE-----YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKI 590
C++ Y D+WS+G E +P +DL + +FK P +
Sbjct: 197 ACEQQLDSTYDARCDVWSLGITAIELGDGDPPL---ADLHPMRALFKIPRNPPPTL 249
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 63.9 bits (155), Expect = 1e-10
Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 26/312 (8%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREI 429
I G+Y V + K+ D+I A+K +K E + I ++ + + N V
Sbjct: 3 IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLH 62
Query: 430 VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGE-VKCLMQQLLNAVAHLHDNWIL 488
++F+V++YV + LM M+ +++ +P E + ++ A+ LH+ I+
Sbjct: 63 SCFQTTSRLFLVIEYV--NGGDLMFHMQRQRK--LPEEHARFYAAEICIALNFLHERGII 118
Query: 489 HRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPI 548
+RDLK N+LL G +K+ D+G+ +E P + T Y +PE+L G +EY +
Sbjct: 119 YRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRG-EEYGFSV 177
Query: 549 DMWSVGCIFAEFLCMEPLFTGKSD--------------LEQLSRIFKTMGTPNEKIWPGF 594
D W++G + E + F +D LE+ RI + + + GF
Sbjct: 178 DWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGF 237
Query: 595 SKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVT-RITADEALRH-- 651
L K P G K + + + +DLL K P +IT D L +
Sbjct: 238 --LNKDPKERLGCQPQTGFSDIK-SHTFFRSIDWDLLEKKQVTPPFKPQITDDYGLENFD 294
Query: 652 DYFSESPLPIDP 663
F+ P+ + P
Sbjct: 295 TQFTSEPVQLTP 306
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 62.7 bits (152), Expect = 2e-10
Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 13/197 (6%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALK-----RLKMEKEKEGFPITSLREINTLLKAQHPNIV 424
I G +G VY + T ++ A+K R+KM K+ E + ++ + P IV
Sbjct: 2 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM-KQGETLALNERIMLSLVSTGDCPFIV 60
Query: 425 TVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHD 484
+ DK+ ++D + + S+ VF E++ +++ + H+H+
Sbjct: 61 CM--TYAFHTPDKLCFILDLMN---GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHN 115
Query: 485 NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEY 544
++++RDLK +N+LL G +++ D GLA ++ H + V T Y +PE+L Y
Sbjct: 116 RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS--VGTHGYMAPEVLQKGTAY 173
Query: 545 STPIDMWSVGCIFAEFL 561
+ D +S+GC+ + L
Sbjct: 174 DSSADWFSLGCMLFKLL 190
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 63.1 bits (153), Expect = 2e-10
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 36/235 (15%)
Query: 363 EFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEK------------EKEGFPITSLR 410
+F L + +G++G V A+ K TDE+ A+K LK + EK + +L+
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKR---VLALQ 57
Query: 411 EINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETM---RSKKQVFIPG 466
+ L H TV D+++ VM+YV D+ ++ + + + VF
Sbjct: 58 DKPPFLTQLHSCFQTV---------DRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAA 108
Query: 467 EVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPI 526
E+ + LH I++RDLK N++L G +K+ DFG+ +E+
Sbjct: 109 EISV-------GLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTF 161
Query: 527 VVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFK 581
T Y +PE ++ + Y +D W+ G + E L +P F G+ + E I +
Sbjct: 162 CGTPDYIAPE-IIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIME 215
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 63.0 bits (153), Expect = 2e-10
Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 7/213 (3%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPIT-SLREINTLLKAQHPNIVTVRE 428
I +G++G V + + + T I ALK ++ +T +L E L + P IV ++
Sbjct: 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLK- 59
Query: 429 IVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWIL 488
+ +K+++V+ ++ + L ++ ++ F + +LL A+ +LH ++
Sbjct: 60 -FSFQSPEKLYLVLAFI--NGGELFHHLQ-REGRFDLSRARFYTAELLCALENLHKFNVI 115
Query: 489 HRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPI 548
+RDLK N+LL ++G + + DFGL + T Y +PELLLG Y+ +
Sbjct: 116 YRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLG-HGYTKAV 174
Query: 549 DMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFK 581
D W++G + E L P F ++ E +I +
Sbjct: 175 DWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQ 207
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 62.6 bits (152), Expect = 2e-10
Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 32/212 (15%)
Query: 369 RIEE----GTYGVVYRAKDK---RTDEIVALKRLK---MEKEKEGFPITSLREINTLLKA 418
+IEE G +G V R + K + + VA+K LK EK++ F L E + + +
Sbjct: 7 KIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDF----LSEASIMGQF 62
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
HPNI+ + +V S + I+ +++E+ +L +R F ++ +++ +
Sbjct: 63 DHPNIIHLEGVVTKSR--PVMIITEFMENG--ALDSFLRQNDGQFTVIQLVGMLRGIAAG 118
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR---------EYGSPLKHYTPIVVT 529
+ +L + +HRDL N+L++ + KV DFGL+R Y S L PI T
Sbjct: 119 MKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWT 178
Query: 530 LWYRSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
+PE + +++++ D+WS G + E +
Sbjct: 179 ----APE-AIAYRKFTSASDVWSYGIVMWEVM 205
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 62.3 bits (151), Expect = 3e-10
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 14/226 (6%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL-KMEKEKEGFPITSLREINTLLKAQH 420
++F+ + I G +G V K K T+ I A+K L K E K E N L+
Sbjct: 1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDC 60
Query: 421 PNIVTVREIVVGSNMDKIFIVMDY-VEHDMKSLMETMRSKKQVFIPGEV-KCLMQQLLNA 478
I T+ N +++VMDY V D+ +L+ + +P ++ + + +++ A
Sbjct: 61 QWITTLHYAFQDENY--LYLVMDYYVGGDLLTLLSKFEDR----LPEDMARFYIAEMVLA 114
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVV-TLWYRSPEL 537
+ +H +HRD+K N+LL G +++ DFG + + + V T Y SPE+
Sbjct: 115 IHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEI 174
Query: 538 LL----GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
L G +Y D WS+G E L E F +S +E +I
Sbjct: 175 LQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKI 220
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 61.9 bits (150), Expect = 4e-10
Identities = 54/214 (25%), Positives = 105/214 (49%), Gaps = 15/214 (7%)
Query: 364 FKCLNRIEEGTYGVVY---RAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTLL 416
F+ L + G YG V+ + + ++ A+K LK ++K K + R++ +
Sbjct: 2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI 61
Query: 417 KAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
+ Q P +VT+ K+ +++DY+ + T S+++ F EV+ +++
Sbjct: 62 R-QSPFLVTLHYAF--QTDTKLHLILDYIN---GGELFTHLSQRERFKEQEVQIYSGEIV 115
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-GSPLKHYTPIVVTLWYRSP 535
A+ HLH I++RD+K N+LL G + + DFGL++E+ ++ T+ Y +P
Sbjct: 116 LALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAP 175
Query: 536 ELLLGCKE-YSTPIDMWSVGCIFAEFLCMEPLFT 568
+++ G + +D WS+G + E L FT
Sbjct: 176 DIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFT 209
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 62.1 bits (151), Expect = 4e-10
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKA--QHPNIVTVR 427
I G+Y V + K+T I A+K +K E + I ++ + + HP +V +
Sbjct: 3 IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLH 62
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGE-VKCLMQQLLNAVAHLHDNW 486
++F V+++V LM M+ +++ +P E + ++ A+ LH+
Sbjct: 63 SCF--QTESRLFFVIEFVSGG--DLMFHMQRQRK--LPEEHARFYSAEISLALNFLHERG 116
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
I++RDLK N+LL G +K+ D+G+ +E P + T Y +PE+L G ++Y
Sbjct: 117 IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRG-EDYGF 175
Query: 547 PIDMWSVGCIFAEFL 561
+D W++G + E +
Sbjct: 176 SVDWWALGVLMFEMM 190
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 61.4 bits (149), Expect = 5e-10
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 15/199 (7%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
++ + + G G VY+A T I+A+K + ++ E + E+ L K P
Sbjct: 1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVE-LQKQIMSELEILYKCDSP 59
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAH 481
I+ N +I I +++ D SL + + V G + ++ + +
Sbjct: 60 YIIGFYGAFFVEN--RISICTEFM--DGGSLDVYRKIPEHVL--GRIAV---AVVKGLTY 110
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-GSPLKHYTPIVVTLWYRSPELLLG 540
L ILHRD+K SN+L++ RG +K+ DFG++ + S K Y V T Y +PE + G
Sbjct: 111 LWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTY---VGTNAYMAPERISG 167
Query: 541 CKEYSTPIDMWSVGCIFAE 559
++Y D+WS+G F E
Sbjct: 168 -EQYGIHSDVWSLGISFME 185
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 62.0 bits (150), Expect = 5e-10
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 20/199 (10%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKME----KEKEGFPITSLREINTLLKAQHPNIVTVR 427
+GT+G V K+K T A+K LK E K++ +T R L ++HP + ++
Sbjct: 5 KGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENR---VLQNSRHPFLTALK 61
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH-DNW 486
D++ VM+Y + S+++VF + ++++A+ +LH +
Sbjct: 62 YSF--QTHDRLCFVMEYAN---GGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKN 116
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAREY---GSPLKHYTPIVVTLWYRSPELLLGCKE 543
+++RDLK NL+L G +K+ DFGL +E G+ +K + T Y +PE+L +
Sbjct: 117 VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCG---TPEYLAPEVLED-ND 172
Query: 544 YSTPIDMWSVGCIFAEFLC 562
Y +D W +G + E +C
Sbjct: 173 YGRAVDWWGLGVVMYEMMC 191
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 61.2 bits (149), Expect = 6e-10
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 50/218 (22%)
Query: 372 EGTYGVVYR--AKDKRTDEI---VALKRLKMEKEKEGFPITSLREINTLL------KAQH 420
+G++G+VY AK E VA+K + S+RE L K +
Sbjct: 16 QGSFGMVYEGLAKGVVKGEPETRVAIKTV--------NENASMRERIEFLNEASVMKEFN 67
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQ------ 473
+ V VR + V S +VM+ + D+KS + + R + + L +
Sbjct: 68 CHHV-VRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAA 126
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYR 533
++ + +A+L +HRDL N +++ +K+GDFG+ R+ I T +YR
Sbjct: 127 EIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRD----------IYETDYYR 176
Query: 534 ------------SPELLLGCKEYSTPIDMWSVGCIFAE 559
+PE L ++T D+WS G + E
Sbjct: 177 KGGKGLLPVRWMAPESLKDGV-FTTKSDVWSFGVVLWE 213
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 61.6 bits (149), Expect = 6e-10
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 14/227 (6%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL-KMEKEKEGFPITSLREINTLLKAQH 420
E+F+ L I G +G V K K D++ A+K L K E K E + L+ +
Sbjct: 1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDN 60
Query: 421 PNIVTVREIVVGSNMDKIFIVMDY-VEHDMKSLMETMRSKKQVFIPGEV-KCLMQQLLNA 478
I T+ N +++VMDY V D+ +L+ SK + +P ++ + + +++ A
Sbjct: 61 QWITTLHYAFQDEN--NLYLVMDYYVGGDLLTLL----SKFEDRLPEDMARFYLAEMVIA 114
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVV-TLWYRSPEL 537
+ +H +HRD+K N+L+ G +++ DFG + + + V T Y SPE+
Sbjct: 115 IDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEI 174
Query: 538 LLGCKE----YSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIF 580
L ++ Y D WS+G E L E F +S +E +I
Sbjct: 175 LQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIM 221
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 59.9 bits (146), Expect = 1e-09
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 25/199 (12%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGF-PITSLREIN--TLLKAQHPNIVT 425
++ +G +G V K K T ++ K +K + F I E L+K +PN +
Sbjct: 23 KLIDGKFGKVSVLKHKPTQKLFVQKIIKAKN----FNAI----EPMVHQLMK-DNPNFIK 73
Query: 426 VREIVVGSNMDKIFIVMDYV-EHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHD 484
+ V + + ++MDY+ + D L + ++ + ++ EVK +++QL+ A+ LH
Sbjct: 74 LYYSV--TTLKGHVLIMDYIKDGD---LFDLLKKEGKLSEA-EVKKIIRQLVEALNDLHK 127
Query: 485 NWILHRDLKTSNLLLS-HRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
+ I+H D+K N+L + + + D+GL + G+P + TL Y SPE + G
Sbjct: 128 HNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDG----TLDYFSPEKIKGHN- 182
Query: 544 YSTPIDMWSVGCIFAEFLC 562
Y D W+VG + E L
Sbjct: 183 YDVSFDWWAVGVLTYELLT 201
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 60.8 bits (148), Expect = 1e-09
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 57/251 (22%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTLLK 417
++F+ + I G +G V + K T I A+K+L+ +EKE+ + + R+I L +
Sbjct: 1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAH-VRAERDI--LAE 57
Query: 418 AQHPNIVTVREIVVGSNMDK--IFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQ 474
A +P +V + S D+ ++++M+Y+ DM +L+ KK F E + + +
Sbjct: 58 ADNPWVVKLYY----SFQDENYLYLIMEYLPGGDMMTLL----MKKDTFTEEETRFYIAE 109
Query: 475 LLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA--------REYGSPLKHYTP- 525
+ A+ +H +HRD+K NLLL +G +K+ DFGL E+ L H P
Sbjct: 110 TILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPS 169
Query: 526 -----------------------------IVVTLWYRSPELLLGCKEYSTPIDMWSVGCI 556
V T Y +PE+ L Y+ D WS+G I
Sbjct: 170 NFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQ-TGYNKECDWWSLGVI 228
Query: 557 FAEFLCMEPLF 567
E L P F
Sbjct: 229 MYEMLVGYPPF 239
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 59.9 bits (145), Expect = 2e-09
Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 15/198 (7%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALK-----RLKMEKEKEGFPITSLREINTLLKAQHPNIV 424
I G +G VY + T ++ A+K R+KM K+ E + ++ + P IV
Sbjct: 2 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKM-KQGETLALNERIMLSLVSTGDCPFIV 60
Query: 425 TVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
+ DK+ ++D + D+ + S+ VF E++ +++ + H+H
Sbjct: 61 CMSYAF--HTPDKLSFILDLMNGGDLHYHL----SQHGVFSEAEMRFYAAEIILGLEHMH 114
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
+ ++++RDLK +N+LL G +++ D GLA ++ H + V T Y +PE+L
Sbjct: 115 NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS--VGTHGYMAPEVLQKGVA 172
Query: 544 YSTPIDMWSVGCIFAEFL 561
Y + D +S+GC+ + L
Sbjct: 173 YDSSADWFSLGCMLFKLL 190
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 59.8 bits (145), Expect = 2e-09
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 48/234 (20%)
Query: 370 IEEGTYGVVYRAK-----DKRTDEIVALKRLK------MEKEKEGFPITSLREINTLLKA 418
I +G +G V++A+ +VA+K LK M+ + + RE + +
Sbjct: 13 IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ-------REAALMAEF 65
Query: 419 QHPNIVTVREI-VVGSNMDKIFIVM------DYVEHDM-KSLMETMRSKKQVFIPGEVK- 469
HPNIV + + VG M +F M +++ H ++ S G
Sbjct: 66 DHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPL 125
Query: 470 --------CLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE------ 515
C+ +Q+ +A+L + +HRDL T N L+ ++K+ DFGL+R
Sbjct: 126 PLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY 185
Query: 516 YGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLC--MEPLF 567
Y + PI + PE + + Y+T D+W+ G + E M+P +
Sbjct: 186 YKASENDAIPIR----WMPPESIFYNR-YTTESDVWAYGVVLWEIFSYGMQPYY 234
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 59.5 bits (144), Expect = 2e-09
Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 26/205 (12%)
Query: 370 IEEGTYGVVYRAKDK---RTDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQHPNI 423
I G +G V + K + + VA+K LK EK++ F L E + + + HPNI
Sbjct: 12 IGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDF----LSEASIMGQFDHPNI 67
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
+ + +V S + IV +Y+E+ SL +R F ++ +++ + + + +L
Sbjct: 68 IHLEGVVTKSK--PVMIVTEYMENG--SLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLS 123
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-GSPLKHYT------PIVVTLWYRSPE 536
D +HRDL N+L++ + KV DFGL+R P YT PI T +PE
Sbjct: 124 DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT----APE 179
Query: 537 LLLGCKEYSTPIDMWSVGCIFAEFL 561
+ +++++ D+WS G + E +
Sbjct: 180 -AIAYRKFTSASDVWSYGIVMWEVM 203
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 59.6 bits (145), Expect = 3e-09
Identities = 73/329 (22%), Positives = 123/329 (37%), Gaps = 75/329 (22%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL---KMEKEKEGFPITSLREINTLLKAQH 420
FK + + +G G V+ + K T ++ ALK L +M K + + + +EI L H
Sbjct: 3 FKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEI--LATLDH 60
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
P + T+ + +VMDY ++ L++ K + ++L A+
Sbjct: 61 PFLPTLYASFQTE--TYLCLVMDYCPGGELFRLLQRQPGK--CLSEEVARFYAAEVLLAL 116
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA-----------------REYGSPLKH 522
+LH I++RDLK N+LL G + + DF L+ S
Sbjct: 117 EYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSI 176
Query: 523 YTPIVV------------TLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGK 570
+ T Y +PE++ G + + +D W++G + E L F G
Sbjct: 177 PSETFSEEPSFRSNSFVGTEEYIAPEVISGDG-HGSAVDWWTLGILLYEMLYGTTPFKGS 235
Query: 571 SDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDL 630
+ E S I K +++TF P V + DL
Sbjct: 236 NRDETFSNILK-------------------KEVTFPGSPPV------------SSSARDL 264
Query: 631 LCKFLTYDPVTRI----TADEALRHDYFS 655
+ K L DP R+ A E +H +F
Sbjct: 265 IRKLLVKDPSKRLGSKRGAAEIKQHPFFR 293
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 59.7 bits (144), Expect = 3e-09
Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 12/201 (5%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
++F+ ++ + G GVV + + K + I+A K + +E K +RE+ L + P
Sbjct: 5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI-KPAIRNQIIRELQVLHECNSP 63
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ-QLLNAVA 480
IV +I I M+++ D SL + ++ K+ IP E+ + +L +A
Sbjct: 64 YIVGFYGAFYSDG--EISICMEHM--DGGSLDQVLKEAKR--IPEEILGKVSIAVLRGLA 117
Query: 481 HLHD-NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
+L + + I+HRD+K SN+L++ RG +K+ DFG++ + + + V T Y SPE L
Sbjct: 118 YLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQ 175
Query: 540 GCKEYSTPIDMWSVGCIFAEF 560
G YS D+WS+G E
Sbjct: 176 G-THYSVQSDIWSMGLSLVEL 195
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 59.4 bits (144), Expect = 3e-09
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 19/229 (8%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKME----KEKEGFPITSLREINTLLK 417
++F + + G +G V ++K T +I A+K +K +E F R+I L
Sbjct: 1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSF-FEEERDI--LSI 57
Query: 418 AQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN 477
+ P I ++ + D +++VM+Y L+ + + F + + +L+
Sbjct: 58 SNSPWIPQLQYAF--QDKDNLYLVMEY--QPGGDLLSLLNRYEDQFDEDMAQFYLAELVL 113
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPI--VVTLWYRSP 535
A+ +H +HRD+K N+L+ G +K+ DFG A + K V T Y +P
Sbjct: 114 AIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTAN-KMVNSKLPVGTPDYIAP 172
Query: 536 ELLLGCK-----EYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
E+L Y D WS+G I E + F + + + I
Sbjct: 173 EVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNI 221
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 58.7 bits (142), Expect = 3e-09
Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E K + ++ G +G V+ + VA+K LK + P L E N + + QHP
Sbjct: 6 ETLKLVKKLGAGQFGEVWMGYYNGHTK-VAIKSLK---QGSMSPEAFLAEANLMKQLQHP 61
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIP-GEVKCLMQQLLNAVA 480
+V + +V + I+I+ +Y+E+ SL++ +++ + + + ++ + Q+ +A
Sbjct: 62 RLVRLYAVV---TQEPIYIITEYMENG--SLVDFLKTPEGIKLTINKLIDMAAQIAEGMA 116
Query: 481 HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRSP 535
+ +HRDL+ +N+L+S K+ DFGLAR EY + PI T +P
Sbjct: 117 FIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWT----AP 172
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAE 559
E + ++ D+WS G + E
Sbjct: 173 E-AINYGTFTIKSDVWSFGILLTE 195
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 59.6 bits (144), Expect = 3e-09
Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 21/251 (8%)
Query: 338 DMEIELEKDTLPPYLPAIQGCRSVEEFKCLNRIEEGTYGVVYRAKDKRTD-EIVALKRL- 395
++++ +KD+ P + E+F + + G++G V A K D VA+KR
Sbjct: 6 NLQLHKKKDSDSTKEPKRKNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFE 65
Query: 396 --KMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDK--IFIVMDYVEHDMKS 451
K+ K+K+ + S R+I + HP V + GS D+ +++V+++V
Sbjct: 66 KSKIIKQKQVDHVFSERKILNYIN--HPFCVNLY----GSFKDESYLYLVLEFVIGG--E 117
Query: 452 LMETMRSKKQVFIPGEVKCL-MQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDF 510
+R K+ P +V C Q++ +L I++RDLK NLLL G +K+ DF
Sbjct: 118 FFTFLRRNKR--FPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDF 175
Query: 511 GLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGK 570
G A+ + + YT + T Y +PE+LL + D W++G E L P F
Sbjct: 176 GFAKVVDT--RTYT-LCGTPEYIAPEILLNVG-HGKAADWWTLGIFIYEILVGCPPFYAN 231
Query: 571 SDLEQLSRIFK 581
L +I +
Sbjct: 232 EPLLIYQKILE 242
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 60.6 bits (147), Expect = 4e-09
Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 34/221 (15%)
Query: 370 IEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITS---LREINTLLKAQHPNIVTV 426
I +G G VY A D VALK+++ ++ P+ LRE HP IV V
Sbjct: 10 IGKGGMGEVYLAYDPVCSRRVALKKIR--EDLSENPLLKKRFLREAKIAADLIHPGIVPV 67
Query: 427 REIVVGSNMDKIFIVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCLMQQLLN-------A 478
I S+ D ++ M Y+E + +KSL++++ K+ + K + L+
Sbjct: 68 YSIC--SDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICAT 125
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA---------------REYGSPLKHY 523
+ ++H +LHRDLK N+LL G + + D+G A E
Sbjct: 126 IEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSM 185
Query: 524 T---PIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
T IV T Y +PE LLG S D++++G I + L
Sbjct: 186 TIPGKIVGTPDYMAPERLLG-VPASESTDIYALGVILYQML 225
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 58.6 bits (142), Expect = 4e-09
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 365 KCLNRIEEGTYGVV----YRAKDKRTDEIVALKRLKMEKEK--EGFPITSLREINTLLKA 418
K + ++ +G +G V Y T E+VA+K+L+ + F REI L
Sbjct: 7 KFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFE----REIEILKSL 62
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
QH NIV + + + + +VM+Y+ + SL + ++ ++ ++ Q+
Sbjct: 63 QHDNIVKYKGVCYSAGRRNLRLVMEYLPYG--SLRDYLQKHRERLDHRKLLLYASQICKG 120
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT-------PIVVTLW 531
+ +L +HRDL T N+L+ +K+GDFGL + ++Y PI W
Sbjct: 121 MEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPI---FW 177
Query: 532 YRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFT 568
Y +PE L K +S D+WS G + E LFT
Sbjct: 178 Y-APESLTESK-FSVASDVWSFGVVLYE------LFT 206
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 58.8 bits (142), Expect = 4e-09
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRL-KMEKEKEGFPITSLREINTLLKAQHPNIVTVREIV 430
+G +G V + K T ++ A K+L K +K+ +L E L K P IV +
Sbjct: 3 KGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAF 62
Query: 431 VGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ-------QLLNAVAHLH 483
+ + +VM SLM K ++ GE M+ Q+ + HLH
Sbjct: 63 --ESKTHLCLVM--------SLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLH 112
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKE 543
I++RD+K N+LL +G ++ D GLA E K T T Y +PE+L +
Sbjct: 113 SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG-KTITQRAGTNGYMAPEILKE-EP 170
Query: 544 YSTPIDMWSVGCIFAEFL 561
YS P+D +++GC E +
Sbjct: 171 YSYPVDWFAMGCSIYEMV 188
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 59.3 bits (143), Expect = 4e-09
Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 48/257 (18%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLK----MEKEKEGFPITSLREINTLLK 417
E+F+ L I G +G V + K T + A+K L+ +EKE+ G I + R+I L++
Sbjct: 1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGH-IRAERDI--LVE 57
Query: 418 AQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLL 476
A ++ V+ + ++++M+++ DM +L+ KK E + + + +
Sbjct: 58 AD--SLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLL----MKKDTLTEEETQFYIAETV 111
Query: 477 NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA--------REYGSPLKHYTPIVV 528
A+ +H +HRD+K NLLL +G +K+ DFGL E+ L H P
Sbjct: 112 LAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDF 171
Query: 529 TL-----------WYRSPELL----LGCKEYSTP-----------IDMWSVGCIFAEFLC 562
T W R+ L +G +Y P D WS+G I E L
Sbjct: 172 TFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLI 231
Query: 563 MEPLFTGKSDLEQLSRI 579
P F ++ E ++
Sbjct: 232 GYPPFCSETPQETYKKV 248
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 58.1 bits (140), Expect = 4e-09
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 373 GTYGVVYRA--KDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIV 430
G +G V + K K++++ VA+K LK + LRE N + + +P IV + I
Sbjct: 6 GNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGIC 65
Query: 431 VGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHR 490
+ +VM+ E + L + ++ K V + L+ Q+ + +L + +HR
Sbjct: 66 EAESW---MLVMELAE--LGPLNKFLQKNKHVTEKNITE-LVHQVSMGMKYLEETNFVHR 119
Query: 491 DLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLW---YRSPELLLGCKEYSTP 547
DL N+LL + K+ DFGL++ G+ +Y W + +PE + K +S+
Sbjct: 120 DLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYK-FSSK 178
Query: 548 IDMWSVGCIFAE 559
D+WS G + E
Sbjct: 179 SDVWSFGVLMWE 190
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 58.5 bits (141), Expect = 4e-09
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 51/236 (21%)
Query: 372 EGTYGVVYRAK-----DKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTV 426
EG +G V+ A+ ++ +VA+K LK E E+ T+L+ QH V
Sbjct: 15 EGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQH----IV 70
Query: 427 REIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQ-----------Q 474
R V + + +V +Y+ H D+ + + ++ GE Q Q
Sbjct: 71 RFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQ 130
Query: 475 LLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYR- 533
+ + + +L +HRDL T N L+ ++K+GDFG++R+ I T +YR
Sbjct: 131 IASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRD----------IYSTDYYRV 180
Query: 534 -----------SPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFT-GKSDLEQLS 577
PE +L ++++T D+WS G + E +FT GK QLS
Sbjct: 181 GGRTMLPIRWMPPESIL-YRKFTTESDIWSFGVVLWE------IFTYGKQPWYQLS 229
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 57.8 bits (140), Expect = 6e-09
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 365 KCLNRIEEGTYGVVYRAKDKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQHP 421
+ L ++ G +G V+ T VA+K LK M+ P L E + K +HP
Sbjct: 9 QLLRKLGAGQFGEVWEGLWNNTTP-VAVKTLKPGTMD------PKDFLAEAQIMKKLRHP 61
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKK--QVFIPGEVKCLMQQLLNAV 479
++ + V + + I+IV + +++ SL+E ++ + +P + + Q+ + +
Sbjct: 62 KLIQL--YAVCTLEEPIYIVTELMKYG--SLLEYLQGGAGRALKLPQLID-MAAQVASGM 116
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRS 534
A+L +HRDL N+L+ I KV DFGLAR Y + PI T +
Sbjct: 117 AYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWT----A 172
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCM----EPLFTGKSDLEQLSRIFK 581
PE L + +S D+WS G + E + P T L+Q+ + ++
Sbjct: 173 PEAALYNR-FSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYR 222
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 58.1 bits (140), Expect = 6e-09
Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 18/201 (8%)
Query: 370 IEEGTYGVVYRAKDK---RTDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQHPNI 423
I G +G V+R K R + VA+K LK EK+++ F L E + + + H NI
Sbjct: 13 IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDF----LSEASIMGQFSHHNI 68
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLH 483
+ + +V + I+ +Y+E+ +L + +R F ++ +++ + + +L
Sbjct: 69 IRLEGVV--TKFKPAMIITEYMENG--ALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLS 124
Query: 484 DNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-GSPLKHYTPI--VVTLWYRSPELLLG 540
D +HRDL N+L++ KV DFGL+R P YT + + + +PE +
Sbjct: 125 DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPE-AIA 183
Query: 541 CKEYSTPIDMWSVGCIFAEFL 561
+++++ D+WS G + E +
Sbjct: 184 YRKFTSASDVWSFGIVMWEVM 204
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 59.1 bits (143), Expect = 6e-09
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 467 EVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFG---LAREYGSPLKHY 523
+V + +QLL+A+ ++H I+HRD+KT N+L++ + +GDFG AR S HY
Sbjct: 261 QVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHY 320
Query: 524 TPIVVTLWYRSPELLLGCKEYSTPIDMWSVG-CIFAEFLCMEPLFTGKSDLE------QL 576
I T+ +PE+L G Y+ +D+WS G IF + LF+ E Q+
Sbjct: 321 G-IAGTVDTNAPEVLAG-DPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQI 378
Query: 577 SRIFKTMGT-PNEKIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYD---LLC 632
RI + +E S+L + + A N T+ A + +L D L+C
Sbjct: 379 LRIIRQAQVHVDEFPQHAGSRLVSQYRHRAAR--NRRPAYTRPAWTRYYKLDLDVEYLVC 436
Query: 633 KFLTYDPVTRITADEALRHDYFSES 657
+ LT+D R +A E LR F
Sbjct: 437 RALTFDGARRPSAAELLRLPLFQSK 461
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 58.1 bits (141), Expect = 6e-09
Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 367 LNRIEEGTYGVVYRAKDKRTDEIVALKRLKM---EKEKEGFPITSLREINTLLKAQH-PN 422
L I G +G V + K + I+A+KR++ EKE++ L +++ ++++ P
Sbjct: 9 LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRL----LMDLDVVMRSSDCPY 64
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEV--KCLMQQLLNAVA 480
IV + +I M+ ++ + + + + IP E+ K + + A+
Sbjct: 65 IVKFYGALF--REGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVA-TVKALN 121
Query: 481 HLHDNW-ILHRDLKTSNLLLSHRGILKVGDFGLA----------REYG-SPLKHYTPIVV 528
+L + I+HRD+K SN+LL G +K+ DFG++ R+ G P
Sbjct: 122 YLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRP--------- 172
Query: 529 TLWYRSPELLL--GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGK-------SDLEQLSRI 579
Y +PE + Y D+WS+G + + + TGK S +QL+++
Sbjct: 173 ---YMAPERIDPSARDGYDVRSDVWSLG------ITLYEVATGKFPYPKWNSVFDQLTQV 223
Query: 580 FK 581
K
Sbjct: 224 VK 225
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 58.2 bits (141), Expect = 7e-09
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
++F+ L + G GVV + + + I+A K + +E K +RE+ L + P
Sbjct: 1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI-KPAIRNQIIRELKVLHECNSP 59
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIP----GEVKCLMQQLLN 477
IV +I I M+++ D SL + ++ + IP G++ +L
Sbjct: 60 YIVGFYGAFYSDG--EISICMEHM--DGGSLDQVLKKAGR--IPENILGKISI---AVLR 110
Query: 478 AVAHLHDNW-ILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPE 536
+ +L + I+HRD+K SN+L++ RG +K+ DFG++ + + + V T Y SPE
Sbjct: 111 GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPE 168
Query: 537 LLLGCKEYSTPIDMWSVG 554
L G Y+ D+WS+G
Sbjct: 169 RLQGTH-YTVQSDIWSLG 185
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 57.7 bits (139), Expect = 7e-09
Identities = 63/258 (24%), Positives = 120/258 (46%), Gaps = 28/258 (10%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKM-EKEKEGFPITSLREINTLLKAQH 420
E K + ++ G +G V+ + + VA+K LK + F L E N + QH
Sbjct: 6 ESIKLVKKLGAGQFGEVWMGYYNNSTK-VAVKTLKPGTMSVQAF----LEEANLMKTLQH 60
Query: 421 PNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKK--QVFIPGEVKCLMQQLLNA 478
+V + +V + + I+I+ +Y+ SL++ ++S + +V +P + Q+
Sbjct: 61 DKLVRLYAVV--TKEEPIYIITEYMAKG--SLLDFLKSDEGGKVLLPKLID-FSAQIAEG 115
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYR 533
+A++ +HRDL+ +N+L+S + K+ DFGLAR EY + PI T
Sbjct: 116 MAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWT---- 171
Query: 534 SPELL-LGCKEYSTPIDMWSVGCIFAEFLCMEPL-FTGKSDLEQLSRIFKTMGTPNEKIW 591
+PE + G ++ D+WS G + E + + + G S+ + +S + + P +
Sbjct: 172 APEAINFGS--FTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMENC 229
Query: 592 PGFSKLPAVQKMTFAEYP 609
P +L + K + E
Sbjct: 230 P--DELYDIMKTCWKEKA 245
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 57.6 bits (139), Expect = 8e-09
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 368 NRIEEGTYGVVYR--AKD---KRTDEI-VALKRLK---MEKEKEGFPITSLREINTLLKA 418
N + G +G VY A D + I VA+K L+ ++EK+ F L+E + +
Sbjct: 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEF----LKEAHLMSNF 56
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPG---EVKCLMQQL 475
HPNIV + + + + + +I+M+ +E L+ +R + +K L+
Sbjct: 57 NHPNIVKLLGVCLLN--EPQYIIMELMEGG--DLLSYLRDARVERFGPPLLTLKELLDIC 112
Query: 476 L---NAVAHLHDNWILHRDLKTSNLLLSHRG-----ILKVGDFGLARE-YGSPL--KHYT 524
L +L +HRDL N L+S +G ++K+GDFGLAR+ Y S K
Sbjct: 113 LDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGE 172
Query: 525 PIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM--EPLFTGKSDLEQLSRI 579
++ W +PE LL K ++T D+WS G + E L + +P + ++ E L +
Sbjct: 173 GLLPVRWM-APESLLDGK-FTTQSDVWSFGVLMWEILTLGQQP-YPALNNQEVLQHV 226
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 56.6 bits (136), Expect = 2e-08
Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 27/238 (11%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E + ++ +G +G V+ T VA+K LK P L+E + K +H
Sbjct: 6 ESLRLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMS---PEAFLQEAQVMKKLRHE 61
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSK--KQVFIPGEVKCLMQQLLNAV 479
+V + +V + + I+IV +Y+ SL++ ++ + K + +P V + Q+ + +
Sbjct: 62 KLVQLYAVV---SEEPIYIVTEYM--SKGSLLDFLKGEMGKYLRLPQLVD-MAAQIASGM 115
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRS 534
A++ +HRDL+ +N+L+ + KV DFGLAR EY + PI T +
Sbjct: 116 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT----A 171
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCM----EPLFTGKSDLEQLSRIFKTMGTPNE 588
PE L + ++ D+WS G + E P + L+Q+ R ++ M P E
Sbjct: 172 PEAALYGR-FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR-MPCPPE 227
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 57.4 bits (138), Expect = 2e-08
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
++F+ ++ + G GVV++ K + I+A K + +E K +RE+ L + P
Sbjct: 5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI-KPAIRNQIIRELQVLHECNSP 63
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQV--FIPGEVKCLMQQLLNAV 479
IV +I I M+++ D SL + ++ ++ I G+V + + L +
Sbjct: 64 YIVGFYGAFYSDG--EISICMEHM--DGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYL 119
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLL 539
H I+HRD+K SN+L++ RG +K+ DFG++ + + + V T Y SPE L
Sbjct: 120 REKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQ 175
Query: 540 GCKEYSTPIDMWSVGCIFAE 559
G YS D+WS+G E
Sbjct: 176 G-THYSVQSDIWSMGLSLVE 194
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 56.5 bits (136), Expect = 2e-08
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 378 VYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDK 437
VY+ + K+ D VA+K LK E EK +RE + + +P IV R I V +
Sbjct: 15 VYKMRKKQID--VAIKVLKNENEK-SVRDEMMREAEIMHQLDNPYIV--RMIGV-CEAEA 68
Query: 438 IFIVMDYVEHDMKS---LMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKT 494
+ +VM+ M S L + + KK V LM Q+ + +L +HRDL
Sbjct: 69 LMLVME-----MASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAA 123
Query: 495 SNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLW---YRSPELLLGCKEYSTPIDMW 551
N+LL ++ K+ DFGL++ G+ +Y W + +PE + +++S+ D+W
Sbjct: 124 RNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECIN-FRKFSSRSDVW 182
Query: 552 SVG 554
S G
Sbjct: 183 SYG 185
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 56.7 bits (137), Expect = 2e-08
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 390 VALKRLKME---KEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVE 446
VA+K LK E+E ++ L+ ++ L H NIV + I ++ +Y
Sbjct: 68 VAVKMLKPTAHSSEREAL-MSELKIMSHL--GNHENIVNLLGACTIGG--PILVITEYCC 122
Query: 447 HDMKSLMETMRSKKQVFIPGE-VKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGIL 505
+ L+ +R K++ F+ E + Q+ +A L +HRDL N+LL+H I+
Sbjct: 123 YG--DLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIV 180
Query: 506 KVGDFGLAREYGSPLKHYTPIVVT------LWYRSPELLLGCKEYSTPIDMWSVGCIFAE 559
K+ DFGLAR+ + + + VV + + +PE + C Y+ D+WS G + E
Sbjct: 181 KICDFGLARD----IMNDSNYVVKGNARLPVKWMAPESIFNCV-YTFESDVWSYGILLWE 235
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 57.1 bits (138), Expect = 2e-08
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL-KMEKEKEGFPITSLREINTLLKAQH 420
++F+ L I G +G V K K T ++ A+K L K E K E + L+
Sbjct: 1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDR 60
Query: 421 PNIVTVREIVVGSNMDKIFIVMDY-VEHDMKSLMETMRSKKQVFIPGEV-KCLMQQLLNA 478
I + + + +++VMDY V D+ +L+ SK + +P ++ + + +++ A
Sbjct: 61 RWITNLHYAF--QDENNLYLVMDYYVGGDLLTLL----SKFEDRLPEDMARFYLAEMVLA 114
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVV-------TLW 531
+ +H +HRD+K N+LL G +++ DF GS L+ V T
Sbjct: 115 IDSVHQLGYVHRDIKPDNVLLDKNGHIRLADF------GSCLRLLADGTVQSNVAVGTPD 168
Query: 532 YRSPELLL----GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
Y SPE+L G Y D WS+G E L E F +S +E +I
Sbjct: 169 YISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKI 220
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 55.6 bits (134), Expect = 2e-08
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 28/195 (14%)
Query: 383 DKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDKIFIVM 442
D RT + LK L+ E RE T++ PN+V + + +V D +F+V+
Sbjct: 14 DTRTQQTFILKGLRKSSEYS-------RERLTIIPHCVPNMVCLHKYIVSE--DSVFLVL 64
Query: 443 DYVEHDMKSLMETMRS--KKQVFIPGE-VKCLMQQLLNAVAHLHDNWILHRDLKTSNLLL 499
+ E + S K + IP E VK +++ A+ LH I+ RDL +N+LL
Sbjct: 65 QHAEGG------KLWSHISKFLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILL 118
Query: 500 SHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAE 559
RG +++ F E V Y +PE + G E + D WS+G I E
Sbjct: 119 DDRGHIQLTYFSRWSEVEDSCDGEA---VENMYCAPE-VGGISEETEACDWWSLGAILFE 174
Query: 560 FLCMEPLFTGKSDLE 574
L TGK+ +E
Sbjct: 175 ------LLTGKTLVE 183
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 56.2 bits (135), Expect = 2e-08
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 40/231 (17%)
Query: 372 EGTYGVVYRA--------KDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
EG +G V+ A KDK + ALK + K+ RE L QH +I
Sbjct: 15 EGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKD-----FQREAELLTNLQHEHI 69
Query: 424 VTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKC------------ 470
V + + D + +V +Y++H D+ + + + G+ +
Sbjct: 70 VKFYGVCG--DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLH 127
Query: 471 LMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT---PIV 527
+ Q+ + + +L +HRDL T N L+ ++K+GDFG++R+ S +Y +
Sbjct: 128 IASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST-DYYRVGGHTM 186
Query: 528 VTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFT-GKSDLEQLS 577
+ + + PE ++ ++++T D+WS G I E +FT GK QLS
Sbjct: 187 LPIRWMPPESIM-YRKFTTESDVWSFGVILWE------IFTYGKQPWFQLS 230
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 57.3 bits (138), Expect = 3e-08
Identities = 107/455 (23%), Positives = 171/455 (37%), Gaps = 101/455 (22%)
Query: 253 KPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKA-- 310
K G+ + +SA S +D +S DS + E +A
Sbjct: 33 KANNSASTGQTTSRSTNSARRSGSKRDRETATSTDSGRTKSHEGAATTKQATTTPTTNVE 92
Query: 311 -----KKRKKEDASPNESERDVSPHVIMDQDVDMEIELEKDTLPPYLPAIQGCRSVEEFK 365
KK+K A PN+S + +V++ +D+D+ S + FK
Sbjct: 93 VAPPPKKKKVTYALPNQSREEGHFYVVLGEDIDV--------------------STQRFK 132
Query: 366 CLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVT 425
L+ + EGT+G V A D+ K KE + +R + + I
Sbjct: 133 ILSLLGEGTFGKVVEAWDR--------------KRKEYCAVKIVRNVPKYTRDAKIEI-Q 177
Query: 426 VREIVVGSNMDKIFIVMD---YVEHDMKSLMETMRS----------KKQVFIPGEVKCLM 472
E V ++ F +M Y +++ + M K F + ++
Sbjct: 178 FMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQII 237
Query: 473 QQLLNAVAHLHDNW-ILHRDLKTSNLLL----------SHRGI------LKVGDFG-LAR 514
Q A+ + H ++H DLK N+L+ ++R + +++ D G
Sbjct: 238 FQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCD 297
Query: 515 EYGSPLKHYTPIVVTLWYRSPELLLGCK-EYSTPIDMWSVGCIFAEFLCMEPLFTGKSDL 573
E S T IV T YRSPE++LG YST DMWS+GCI E + L+ +L
Sbjct: 298 ERHS----RTAIVSTRHYRSPEVVLGLGWMYST--DMWSMGCIIYELYTGKLLYDTHDNL 351
Query: 574 EQLSRIFKTMGT-PNEKIWPGFSKLPAVQKMTFAEYPNVGGLKT--------------KV 618
E L + KT+G P+E W G + + Y + G L+ V
Sbjct: 352 EHLHLMEKTLGRLPSE--WAGRCGTEEARLL----YNSAGQLRPCTDPKHLARIARARPV 405
Query: 619 AGSILTELGYDLLCKFLTYDPVTRITADEALRHDY 653
I +L DL+ L YD R+ A + H Y
Sbjct: 406 REVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPY 440
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 57.8 bits (139), Expect = 3e-08
Identities = 55/321 (17%), Positives = 134/321 (41%), Gaps = 8/321 (2%)
Query: 8 DSLEIKPPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERD 67
D+ + K +A + + + + ++++ K ++ K+ + +E+
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Query: 68 RRHHHKEK-ERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKA 126
+ K+K E D+ K+D+ + ++ DE +K +E+K + K K A++ DE K
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
Query: 127 KEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTR 186
K + + E K+ + ++ ++ +++ + + +A+ K+ +E K ++ +K +
Sbjct: 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK--KADEAKKKAEEAKKKADEAKKAAEAK 1509
Query: 187 SRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSP 246
++ KA+ DEA + ++ + A E + +L+ A + +E +
Sbjct: 1510 KKADE-AKKAEEAKKADEA--KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566
Query: 247 TPQR--DEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKAD 304
+ +E + E A AE + E E + + EE ++
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
Query: 305 KKEKKAKKRKKEDASPNESER 325
K E++ KK ++ E ++
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKK 1647
Score = 55.1 bits (132), Expect = 2e-07
Identities = 54/308 (17%), Positives = 132/308 (42%), Gaps = 19/308 (6%)
Query: 27 RSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSD 86
R++++ + + +Q ++ + E ++ +K ++ K+D++
Sbjct: 1249 RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK 1308
Query: 87 GGHKSHRRRDEDRKHRDERKAR-EAQKSKEYTAREIDELKAKEAD-----LRARLERKRY 140
+ ++ DE +K +E K + +A K K A++ E EA+ A E+
Sbjct: 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
Query: 141 SNPLREKEKIERELRKERLLEAERVKEAYK---ERVKDVEQKRKRYRTRSRSRSPINKAK 197
+ +E+ K + + K++ E ++ EA K E K ++ +K + ++ KA+
Sbjct: 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAE 1428
Query: 198 NEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTG 257
+ DEA ++ E+ A E++ ++ + ++ ++ ++
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA----------KKKAEEAKKADEAKKK 1478
Query: 258 QEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKED 317
EE + A A+ A + D ++ +++ +DE + E KAD+ +K + +K ++
Sbjct: 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
Query: 318 ASPNESER 325
A E ++
Sbjct: 1539 AKKAEEKK 1546
Score = 54.4 bits (130), Expect = 3e-07
Identities = 63/383 (16%), Positives = 148/383 (38%), Gaps = 18/383 (4%)
Query: 20 QLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDR 79
+ K + K + + + + K ++ + E + E ++
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Query: 80 NKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKR 139
++ + + +K +++KA EA+K E ++ DELK A + E K+
Sbjct: 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
Query: 140 YSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNE 199
+ ++ ++ +++ + + +A+ K+ +E K E+ +K+ ++ KA+
Sbjct: 1426 KAEEKKKADEAKKKAEEAK--KADEAKKKAEEA-KKAEEAKKKAEEAKKADEAKKKAEEA 1482
Query: 200 MDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQE 259
DEA ++ E+ + A E++ + DE++ + E
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKK-----------ADEAKKAEEAKKADEAKKAE 1531
Query: 260 EGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDAS 319
E + A A+ + E + E + EE+ E K +++K RK E+A
Sbjct: 1532 EAKKADEAKKA----EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
Query: 320 PNESERDVSPHVIMDQDVDMEIELEKDTLPPYLPAIQGCRSVEEFKCLNRIEEGTYGVVY 379
E R + +++ M+ E K + A + ++ EE K + ++++
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
Query: 380 RAKDKRTDEIVALKRLKMEKEKE 402
+A++ + E + E +K
Sbjct: 1648 KAEELKKAEEENKIKAAEEAKKA 1670
Score = 53.2 bits (127), Expect = 8e-07
Identities = 53/271 (19%), Positives = 112/271 (41%), Gaps = 30/271 (11%)
Query: 60 SRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAR 119
++ + E R+ K D K++++ R+ ++ ++ RKA +A+K++E AR
Sbjct: 1120 AKKKAEDARKAEEARKAEDARKAEEA-------RKAEDAKRVEIARKAEDARKAEE--AR 1170
Query: 120 EIDELKAKEADLRA----RLERKRYSNPLREKEKIERELRKERLLEAERVKEAYK-ERVK 174
+ ++ K EA +A + E R + R+ E + + + EA + ++A K E VK
Sbjct: 1171 KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVK 1230
Query: 175 DVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAA 234
E+ +K ++ + +N ++ + + AR A E+R +L+ A
Sbjct: 1231 KAEEAKKDAEEAKKAE----EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286
Query: 235 GLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEE 294
DE++ ++ E AE + ++E+ + E + +D
Sbjct: 1287 EEKKKADEAKKAEEKKKAD--------EAKKKAEEAKKADEAKKKAEEAKKK----ADAA 1334
Query: 295 ENDENEDKADKKEKKAKKRKKEDASPNESER 325
+ E K + KA+ D + E+
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 52.1 bits (124), Expect = 2e-06
Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 23/238 (9%)
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRA----RLERKRYSNPLREKEK 149
++ E K + RKA EA+K E AR+ +E + E +A + E + R+ E
Sbjct: 1104 KKTETGKAEEARKAEEAKKKAE-DARKAEEARKAEDARKAEEARKAEDAKRVEIARKAED 1162
Query: 150 IERELRKERLLEAERVKEAYK-ERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQR 208
+ + +A++ + A K E V+ E+ RK R + KA+ E +EA R
Sbjct: 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAA--RKAEEERKAEEA--R 1218
Query: 209 GEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAE 268
+D + A E++ +E++ +R+ + EE +A A
Sbjct: 1219 KAEDAKKAEAVKKAEEAKKDA-----------EEAKKAEEERNNEEIRKFEEARMAHFAR 1267
Query: 269 SSAG--SEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESE 324
A +EE+ + +++ +DE + E + KAD+ +KKA++ KK D + ++E
Sbjct: 1268 RQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1325
Score = 51.3 bits (122), Expect = 3e-06
Identities = 63/302 (20%), Positives = 127/302 (42%), Gaps = 33/302 (10%)
Query: 49 KSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSD---------------QSDGGHKSHR 93
K+ K+ + + + K+ E +RN + Q+ + R
Sbjct: 1219 KAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLRE-----KE 148
+ DE +K +++KA EA+K++E ++ DE K K + + E K+ + ++ K+
Sbjct: 1279 KADELKKAEEKKKADEAKKAEE--KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
Query: 149 KIERELRKERLLEAE---RVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEA 205
K E + +AE EA K ++K+ + ++ + KA+ + DEA
Sbjct: 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
Query: 206 HQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAG 265
++ E+D + A ++ + D EA E + + +K ++ E
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKAD-EAKK----KAEEKKKADEAKKKAEEAKKADEAKK 1451
Query: 266 SAESSAGSEESSQDGSEDSSQDSSSSDEEEN---DENEDKADKKEKKAKKRKKEDASPNE 322
AE + +EE+ + E D + EE DE + KA++ +KKA + KK + +
Sbjct: 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Query: 323 SE 324
++
Sbjct: 1512 AD 1513
Score = 45.5 bits (107), Expect = 2e-04
Identities = 48/277 (17%), Positives = 106/277 (38%), Gaps = 15/277 (5%)
Query: 63 RDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKS-----KEYT 117
+ E R+ K D K++ + + R+ +E RK D +KA +K+
Sbjct: 1183 KAEEVRKAEELRKAEDARKAEAARK-AEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE 1241
Query: 118 AREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYK----ERV 173
A++ +E + E + R + + K E + + L +AE K+A + E
Sbjct: 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK 1301
Query: 174 KDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEA 233
K ++ +K+ ++ KA+ +A ++ ++ + A + + EA
Sbjct: 1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
Query: 234 A-----GLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDS 288
A +E++ +K ++ E AE + + + +
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD 1421
Query: 289 SSSDEEENDENEDKADKKEKKAKKRKKEDASPNESER 325
+ + E + D+A KK ++AKK + E+++
Sbjct: 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 44.0 bits (103), Expect = 6e-04
Identities = 59/274 (21%), Positives = 113/274 (41%), Gaps = 29/274 (10%)
Query: 55 KSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSK 114
K+ ++ + + +K+ + D + +++D + + E+ K + KA EA+K++
Sbjct: 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAE 1118
Query: 115 EYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYK-ERV 173
E + D KA+EA + E R + R+ E +R + +A + +EA K E
Sbjct: 1119 EAKKKAEDARKAEEA---RKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDA 1175
Query: 174 KDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEA 233
K E RK R + KA++ + A + E+ A E+R +D +
Sbjct: 1176 KKAEAARKAEEVRKAEE--LRKAEDARKAEAARKAEEERKAE--------EARKAEDAKK 1225
Query: 234 AGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDE 293
A V +E++ ++ E A AE +EE + E +
Sbjct: 1226 AEAVKKAEEAK--------------KDAEEAKKAEEERNNEEIRK-FEEARMAHFARRQA 1270
Query: 294 EENDENEDKADKKEKKAKKRKKEDASPNESERDV 327
E KAD+ +K +K+K ++A E ++
Sbjct: 1271 AIKAEEARKADELKKAEEKKKADEAKKAEEKKKA 1304
Score = 41.3 bits (96), Expect = 0.003
Identities = 46/240 (19%), Positives = 95/240 (39%), Gaps = 16/240 (6%)
Query: 74 EKERDRNKSDQSDGGHKSHRRRDEDRKHRDE---RKAREAQKSKEYTAREIDELKAKEAD 130
+ + K+++ + ++ +ED K E ++A EA+K++E +E +E K E
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 131 LRARLERKRYSNPLREKEKIER----ELRKERLLEAERVKEAYKERVKDVEQKRKRYRTR 186
+A E K + +++ + ++ E +K+ E +++ KE K E+ RK
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE-EEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
Query: 187 SRSRSPINKAKNEMDVDEAHQRGEDDGARTPPG-----PAAPESRSRQDLEAAGLVVLTD 241
K M+VD+ + D+ A G +S+ +D + +
Sbjct: 1781 IEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKN 1840
Query: 242 ESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENED 301
++ E G+ E+ E +D ED ++ +DE E + +D
Sbjct: 1841 MQLEEADAFEKHKFNKNNENGEDGNKEADFNKE---KDLKEDDEEEIEEADEIEKIDKDD 1897
Score = 38.6 bits (89), Expect = 0.020
Identities = 30/164 (18%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 59 RSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDE--RKAREAQKSKEY 116
+ D++ K +E ++ ++ + ++ +E +K E +KA E +K++E
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
Query: 117 TAREIDELKAKEADLRARLE--------RKRYSNPLREKEKIERELRKER-LLEAERVKE 167
+ +E K + + + + E +K+ ++ +E+EK E+RKE+ + E + E
Sbjct: 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
Query: 168 AYKERVKDVEQKRKRYRTRS-------RSRSPINKAKNEMDVDE 204
++R +V++K K + + + EM+
Sbjct: 1788 EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSA 1831
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 56.6 bits (136), Expect = 4e-08
Identities = 70/292 (23%), Positives = 112/292 (38%), Gaps = 88/292 (30%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVG 432
G +G V A+ T + A+K +LR+ + LL+ Q ++ R+I+
Sbjct: 12 GAFGEVCLARKVDTKALYAMK--------------TLRKKDVLLRNQVAHVKAERDILAE 57
Query: 433 SN-------------MDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
++ D ++ VMDY+ DM SL+ M +F + + +L A
Sbjct: 58 ADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM----GIFPEDLARFYIAELTCA 113
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGL-------------------------- 512
V +H +HRD+K N+L+ G +K+ DFGL
Sbjct: 114 VESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDF 173
Query: 513 -----------------------AREYGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPID 549
AR++ L H +V T Y +PE+LL Y+ D
Sbjct: 174 SNEWGDPANCRCGDRLKPLERRAARQHQRCLAH--SLVGTPNYIAPEVLLRTG-YTQLCD 230
Query: 550 MWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGT----PNEKIWPGFSKL 597
WSVG I E L +P F ++ LE ++ + P K+ P S L
Sbjct: 231 WWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDL 282
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 56.8 bits (137), Expect = 4e-08
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 22/164 (13%)
Query: 360 SVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLR-EINTLLKA 418
S+EEF + I G +G VY + K ++ A+K +K + ++ E + L +
Sbjct: 2 SIEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALS 61
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDY-VEHDMKSLM-------ETMRSKKQVFIPGEVKC 470
+ P IV + + +N +++VM+Y + D+KSL+ E M V EV
Sbjct: 62 KSPFIVHLYYSLQSAN--NVYLVMEYLIGGDVKSLLHIYGYFDEEM----AVKYISEVAL 115
Query: 471 LMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR 514
A+ +LH + I+HRDLK N+L+S+ G +K+ DFGL++
Sbjct: 116 -------ALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSK 152
Score = 31.8 bits (72), Expect = 2.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 525 PIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLF 567
I+ T Y +PELLLG K + +D W++G EFL P F
Sbjct: 539 RILGTPDYLAPELLLG-KPHGPAVDWWALGVCLFEFLTGIPPF 580
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 55.5 bits (133), Expect = 4e-08
Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 33/226 (14%)
Query: 372 EGTYGVVYRAK-----DKRTDEIVALKRLK--MEKEKEGFPITSLREINTLLKAQHPNIV 424
EG +G V+ A+ ++ +VA+K LK + ++ F RE L QH +IV
Sbjct: 15 EGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFH----REAELLTNLQHEHIV 70
Query: 425 TVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPG---------EVKCLMQQ 474
+ V D + +V +Y++H D+ + + G ++ + QQ
Sbjct: 71 KFYGVCVEG--DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQ 128
Query: 475 LLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTP--IVVTLWY 532
+ + +L +HRDL T N L+ ++K+GDFG++R+ S + ++ + +
Sbjct: 129 IAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRW 188
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFT-GKSDLEQLS 577
PE ++ ++++T D+WS+G + E +FT GK QLS
Sbjct: 189 MPPESIM-YRKFTTESDVWSLGVVLWE------IFTYGKQPWYQLS 227
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 55.8 bits (134), Expect = 5e-08
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 15/225 (6%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL-KMEKEKEGFPITSLREINTLLKAQH 420
E++ + I G +G V + K + ++ A+K L K E K E + + A
Sbjct: 43 EDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS 102
Query: 421 PNIVTVREIVVGSNMDK-IFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
P +V ++ DK +++VM+Y+ D+ +LM ++ K +++ A
Sbjct: 103 PWVV---QLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVPEKW-----AKFYTAEVVLA 154
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYG-SPLKHYTPIVVTLWYRSPEL 537
+ +H ++HRD+K N+LL G LK+ DFG + + + V T Y SPE+
Sbjct: 155 LDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEV 214
Query: 538 LL---GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
L G Y D WSVG E L + F S + S+I
Sbjct: 215 LKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKI 259
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 55.2 bits (133), Expect = 6e-08
Identities = 53/206 (25%), Positives = 101/206 (49%), Gaps = 25/206 (12%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
+E + L+ + +G YG VY+ + T +A+K +++E ++ F + E++ L KA P
Sbjct: 1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFN-QIIMELDILHKAVSP 59
Query: 422 NIVTVRE--IVVGSNMDKIFIVMDYVEHDMKSLME-TMRSKKQVFIPGEVKCLMQQLLNA 478
IV + G+ +++ M+Y+ D SL + IP +V ++++ A
Sbjct: 60 YIVDFYGAFFIEGA----VYMCMEYM--DAGSLDKLYAGGVATEGIPEDV---LRRITYA 110
Query: 479 VAH-----LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYR 533
V ++ I+HRD+K +N+L++ G +K+ DFG++ + L T I Y
Sbjct: 111 VVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAK-TNIGCQS-YM 168
Query: 534 SPELL-----LGCKEYSTPIDMWSVG 554
+PE + Y+ D+WS+G
Sbjct: 169 APERIKSGGPNQNPTYTVQSDVWSLG 194
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 55.2 bits (133), Expect = 6e-08
Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 16/197 (8%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E+ + ++ + G G V + K T ++A K + + K LRE+ + + + P
Sbjct: 5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA-KSSVRKQILRELQIMHECRSP 63
Query: 422 NIVTVREIVVGS--NMDKIFIVMDYVEHDMKSLMETMRSKK--QVFIPGEVKCLMQQLLN 477
IV+ G+ N + I + M+++ D SL + V I G++ + + L
Sbjct: 64 YIVSF----YGAFLNENNICMCMEFM--DCGSLDRIYKKGGPIPVEILGKIAVAVVEGLT 117
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
+ ++H I+HRD+K SN+L++ RG +K+ DFG++ E + + V T Y SPE
Sbjct: 118 YLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIAD--TFVGTSTYMSPER 173
Query: 538 LLGCKEYSTPIDMWSVG 554
+ G K Y+ D+WS+G
Sbjct: 174 IQGGK-YTVKSDVWSLG 189
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 55.1 bits (133), Expect = 6e-08
Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 57/246 (23%)
Query: 367 LNRIEE---GTYGVVYRAKDKRTDEIVALKRLKME---KEKEGFPITSLREINTLLKAQH 420
L IEE G YGVV + + T I+A+KR++ +E++ L +++ +++
Sbjct: 3 LEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRL----LMDLDISMRSVD 58
Query: 421 -PNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRS----------KKQVFIPGEVK 469
P VT F + E D+ ME M + K + IP ++
Sbjct: 59 CPYTVT-------------FYGALFREGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDIL 105
Query: 470 CLMQ-QLLNAVAHLHDNW-ILHRDLKTSNLLLSHRGILKVGDFG--------LAREYGSP 519
+ ++ A+ +LH ++HRD+K SN+L++ G +K+ DFG +A+ +
Sbjct: 106 GKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAG 165
Query: 520 LKHYTPIVVTLWYRSPELL---LGCKEYSTPIDMWSVGCIFAEFLCME-PLFTGKSDLEQ 575
K Y PE + L K Y D+WS+G E P + K+ +Q
Sbjct: 166 CKPYMA---------PERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQ 216
Query: 576 LSRIFK 581
L ++ +
Sbjct: 217 LKQVVE 222
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 54.8 bits (132), Expect = 7e-08
Identities = 56/247 (22%), Positives = 100/247 (40%), Gaps = 37/247 (14%)
Query: 360 SVEEFKCLNRIEEGTYGVVYRAK-----DKRTDEIVALKRLKMEKE---KEGFPITSLRE 411
+ + L + EG +G VY+ + ++ + VA+K LK E ++ F +E
Sbjct: 3 PLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEF----RQE 58
Query: 412 INTLLKAQHPNIVTVREIVVGSN-MDKIFIVMDYVE----------HDMKSLMETMRSKK 460
+ QHPNIV + + +F + + + H + K
Sbjct: 59 AELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVK 118
Query: 461 QVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE----- 515
+ + Q+ + +L + +HRDL N L+ +K+ DFGL+R+
Sbjct: 119 SSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSAD 178
Query: 516 -YGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLC--MEPLFTGKSD 572
Y K P+ W PE +L K ++T D+WS G + E ++P + G S+
Sbjct: 179 YYRVQSKSLLPV---RWM-PPEAILYGK-FTTESDIWSFGVVLWEIFSYGLQPYY-GFSN 232
Query: 573 LEQLSRI 579
E + I
Sbjct: 233 QEVIEMI 239
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 55.0 bits (132), Expect = 7e-08
Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 389 IVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEH- 447
+VA+K L+ + K L+EI + + ++PNI+ + + V D + ++ +Y+E+
Sbjct: 46 LVAVKMLRADVTKTARN-DFLKEIKIMSRLKNPNIIRLLGVCVSD--DPLCMITEYMENG 102
Query: 448 DMKSLMETMRSKKQVFIPGEVKC--------LMQQLLNAVAHLHDNWILHRDLKTSNLLL 499
D+ + + + + Q+ + + +L +HRDL T N L+
Sbjct: 103 DLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLV 162
Query: 500 SHRGILKVGDFGLAREYGSPLKHY----TPIVVTLWYRSPELLLGCKEYSTPIDMWSVGC 555
+ +K+ DFG++R S +Y ++ W +LLG +++T D+W+ G
Sbjct: 163 GNHYTIKIADFGMSRNLYSG-DYYRIQGRAVLPIRWMAWESILLG--KFTTASDVWAFGV 219
Query: 556 IFAEF--LCMEPLFTGKSD---LEQLSRIFKTMG 584
E LC E ++ SD +E F+ G
Sbjct: 220 TLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQG 253
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 54.8 bits (132), Expect = 7e-08
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 459 KKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-- 516
++ VF E+ C ++ LH I++RDLK N+LL G +++ D GLA E
Sbjct: 102 ERAVFYAAEITCGLE-------DLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPE 154
Query: 517 GSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
G ++ V T+ Y +PE++ + Y+ D W +GC+ E +
Sbjct: 155 GETIRGR---VGTVGYMAPEVVKN-ERYTFSPDWWGLGCLIYEMI 195
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 54.4 bits (131), Expect = 8e-08
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 30/212 (14%)
Query: 370 IEEGTYGVVYRA--KDKRTDEI-VALKRLKMEKE---KEGFPITSLREINTLLKAQHPNI 423
I EG +G VY+ ++I VA+K K +E F L+E + + HP+I
Sbjct: 14 IGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKF----LQEAYIMRQFDHPHI 69
Query: 424 VTVREIVVGSNMDKIFIVMD-YVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHL 482
V + ++ + ++IVM+ +++S ++ + + + QL A+A+L
Sbjct: 70 VKLIGVITE---NPVWIVMELAPLGELRSYLQVNKYSLDL---ASLILYSYQLSTALAYL 123
Query: 483 HDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTL---WYRSPELLL 539
+HRD+ N+L+S +K+GDFGL+R Y +Y L W +PE +
Sbjct: 124 ESKRFVHRDIAARNVLVSSPDCVKLGDFGLSR-YLEDESYYKASKGKLPIKWM-APE-SI 180
Query: 540 GCKEYSTPIDMWSVGCIFAEFLCM-EPLFTGK 570
+ +++ D+W G +CM E L G
Sbjct: 181 NFRRFTSASDVWMFG------VCMWEILMLGV 206
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 55.0 bits (133), Expect = 8e-08
Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Query: 376 GVVYRAKDKRTDEIVALKRLKME-KEKEGFPITSL-REINTLLKAQHPNIVTVREIVVGS 433
+V+ AK K T+ +VA+K++ ++ KE L +EI T + QHPNI+ +
Sbjct: 14 MIVHLAKHKPTNTLVAVKKINLDSCSKEDL--KLLQQEIITSRQLQHPNILPYVTSFIVD 71
Query: 434 NMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCL-MQQLLNAVAHLHDNWILHRDL 492
+ ++++V + + + +++ +P ++ +LNA+ ++H +HR +
Sbjct: 72 S--ELYVVSPLMAYGSCEDL--LKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSV 127
Query: 493 KTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPI-------VVTLWYRSPELL----LGC 541
K S++LLS G + + + K + V L + SPE+L G
Sbjct: 128 KASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQG- 186
Query: 542 KEYSTPIDMWSVG 554
Y+ D++SVG
Sbjct: 187 --YNEKSDIYSVG 197
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 54.5 bits (131), Expect = 9e-08
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYR 533
Q+++ + HLH I++RDLK N+LL + G +++ D GLA E T +
Sbjct: 105 QIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFM 164
Query: 534 SPELLLGCKEYSTPIDMWSVGCIFAEFL 561
+PELL G +EY +D +++G E +
Sbjct: 165 APELLQG-EEYDFSVDYFALGVTLYEMI 191
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 55.0 bits (132), Expect = 1e-07
Identities = 75/303 (24%), Positives = 122/303 (40%), Gaps = 48/303 (15%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL-KMEKEKEGFPITSLREINTLLKAQH 420
E+++ + I G +G V + K T ++ A+K L K E K E + + A
Sbjct: 43 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS 102
Query: 421 PNIVTVREIVVGSNMDK-IFIVMDYVEH-DMKSLMETMRSKKQVFIPGE-VKCLMQQLLN 477
P +V ++ D+ +++VM+Y+ D+ +LM +P + + +++
Sbjct: 103 PWVV---QLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD------VPEKWARFYTAEVVL 153
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSP-LKHYTPIVVTLWYRSPE 536
A+ +H +HRD+K N+LL G LK+ DFG + + V T Y SPE
Sbjct: 154 ALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPE 213
Query: 537 LLL---GCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEKIWPG 593
+L G Y D WSVG E L + F S + S+I M N +P
Sbjct: 214 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKI---MNHKNSLTFPD 270
Query: 594 FSKLPAVQKMTFAEYPNVGGLKTKVAGSILTELGYDLLCKFLTYDPVT--RITADEALRH 651
+ + K +L+C FLT V R +E RH
Sbjct: 271 DNDISKEAK--------------------------NLICAFLTDREVRLGRNGVEEIKRH 304
Query: 652 DYF 654
+F
Sbjct: 305 LFF 307
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 55.0 bits (132), Expect = 1e-07
Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 64/265 (24%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
++F+ L I G +G V + K T I A+K LR+ + L K Q
Sbjct: 1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMK--------------ILRKADMLEKEQVA 46
Query: 422 NIVTVREIVVGSNMDKIFIV-MDYVEHDMKSL-----------METMRSKKQVFIPGEVK 469
+I R+I+V + D ++V M Y D ++L M T+ KK +
Sbjct: 47 HIRAERDILVEA--DGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLSEEATQ 104
Query: 470 CLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA--------REYGSPLK 521
+ + + A+ +H +HRD+K NLLL +G +K+ DFGL E+ L
Sbjct: 105 FYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLT 164
Query: 522 HYTP---------------------------IVVTLWYRSPELLLGCKEYSTPIDMWSVG 554
H P V T Y +PE+ + Y+ D WS+G
Sbjct: 165 HNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTG-YNKLCDWWSLG 223
Query: 555 CIFAEFLCMEPLFTGKSDLEQLSRI 579
I E L P F ++ E ++
Sbjct: 224 VIMYEMLIGYPPFCSETPQETYRKV 248
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 52.3 bits (125), Expect = 3e-07
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 26/209 (12%)
Query: 362 EEFKCLNRIEEGTYGVVYRAK-DKRTDEIVALKRLKM-EKEKEGFPITSLREINTLLKAQ 419
E K ++ G +G V+ A +K T VA+K +K E F L E N + Q
Sbjct: 6 ESLKLEKKLGAGQFGEVWMATYNKHTK--VAVKTMKPGSMSVEAF----LAEANVMKTLQ 59
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKK--QVFIPGEVKCLMQQLLN 477
H +V + +V + I+I+ +++ SL++ ++S + + +P + Q+
Sbjct: 60 HDKLVKLHAVV---TKEPIYIITEFMAKG--SLLDFLKSDEGSKQPLPKLID-FSAQIAE 113
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWY 532
+A + +HRDL+ +N+L+S + K+ DFGLAR EY + PI T
Sbjct: 114 GMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWT--- 170
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
+PE + ++ D+WS G + E +
Sbjct: 171 -APE-AINFGSFTIKSDVWSFGILLMEIV 197
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 52.7 bits (126), Expect = 3e-07
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 26/231 (11%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHP 421
E + + ++ G +G V+ + VA+K LK P + L E + K +H
Sbjct: 6 ESLQLIKKLGNGQFGEVWMGTWNGNTK-VAVKTLKPGTMS---PESFLEEAQIMKKLRHD 61
Query: 422 NIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMR--SKKQVFIPGEVKCLMQQLLNAV 479
+V + +V + + I+IV +Y+ SL++ ++ + + +P V + Q+ +
Sbjct: 62 KLVQLYAVV---SEEPIYIVTEYMSKG--SLLDFLKDGEGRALKLPNLVD-MAAQVAAGM 115
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRS 534
A++ +HRDL+++N+L+ + K+ DFGLAR EY + PI T +
Sbjct: 116 AYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWT----A 171
Query: 535 PELLLGCKEYSTPIDMWSVGCIFAEFLCM----EPLFTGKSDLEQLSRIFK 581
PE L + ++ D+WS G + E + P + LEQ+ R ++
Sbjct: 172 PEAALYGR-FTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYR 221
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 52.7 bits (126), Expect = 6e-07
Identities = 82/353 (23%), Positives = 130/353 (36%), Gaps = 82/353 (23%)
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVG 432
G +G V A T + A+K L+ + + ++ +L A+ N V+
Sbjct: 12 GAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDIL-AEADNEWVVKLYYSF 70
Query: 433 SNMDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRD 491
+ D ++ VMDY+ DM SL+ M +VF + + +L A+ +H +HRD
Sbjct: 71 QDKDNLYFVMDYIPGGDMMSLLIRM----EVFPEVLARFYIAELTLAIESVHKMGFIHRD 126
Query: 492 LKTSNLLLSHRGILKVGDFGLAREY-----------GSPLKHYTPIVVTLW--------- 531
+K N+L+ G +K+ DFGL + GS ++ + LW
Sbjct: 127 IKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCG 186
Query: 532 ---------------------------YRSPELLLGCKEYSTPIDMWSVGCIFAEFLCME 564
Y +PE+LL K Y+ D WSVG I E L +
Sbjct: 187 DRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLR-KGYTQLCDWWSVGVILFEMLVGQ 245
Query: 565 PLFTGKSDLEQLSRIFKTMGTPNEKIWPGFSKLPAVQKMTFAEYPNVGGLKTKVAGSILT 624
P F + E ++ W +P K++ P L TK+ S
Sbjct: 246 PPFLAPTPTETQLKVIN---------WENTLHIPPQVKLS----PEAVDLITKLCCSAEE 292
Query: 625 ELGYDLLCKFLTYDPVTRITADEALRHDYFSESPLPIDPAMFPTWPAKSELAH 677
LG R AD+ H +FSE D P P +++H
Sbjct: 293 RLG--------------RNGADDIKAHPFFSEVDFSSDIRTQPA-PYVPKISH 330
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 52.7 bits (127), Expect = 8e-07
Identities = 44/230 (19%), Positives = 75/230 (32%), Gaps = 50/230 (21%)
Query: 108 REAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKE---------- 157
E QK+KE +EL DL + L R P + E E
Sbjct: 191 AERQKAKEEDEDLREELDDDFKDLMSLL---RTVKPPPKPPMTPEEKDDEYDQRVRELTF 247
Query: 158 --------RLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRG 209
R E + + ER+K +E +R R R R + D+ +
Sbjct: 248 DRRAQPTDRTKTEEELAKEEAERLKKLEAERLR-RMR------------GEEEDDEEEED 294
Query: 210 EDDGARTPPGPAAPESRSRQDLEAAGLVVLTDE--SRSPTPQRDEKPGTGQEEGELAGSA 267
S DL+ D +E+ +E E
Sbjct: 295 SK--------------ESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDD 340
Query: 268 ESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKED 317
+ E+ E+ +D S DE++ +E E++ +KK+KK+ + + +
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 51.2 bits (122), Expect = 8e-07
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 26/224 (11%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVRE 428
++ +G +G V+ T + VA+K LK P L+E + K +H +V +
Sbjct: 13 KLGQGCFGEVWMGTWNGTTK-VAIKTLK---PGTMMPEAFLQEAQIMKKLRHDKLVPLYA 68
Query: 429 IVVGSNMDKIFIVMDYVEHDMKSLMETMRSK--KQVFIPGEVKCLMQQLLNAVAHLHDNW 486
+V + + I+IV +++ SL++ ++ K + +P V + Q+ + +A++
Sbjct: 69 VV---SEEPIYIVTEFMGKG--SLLDFLKEGDGKYLKLPQLVD-MAAQIADGMAYIERMN 122
Query: 487 ILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVVTLWYRSPELLLGC 541
+HRDL+ +N+L+ + K+ DFGLAR EY + PI T +PE L
Sbjct: 123 YIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWT----APEAALYG 178
Query: 542 KEYSTPIDMWSVGCIFAEFLCM----EPLFTGKSDLEQLSRIFK 581
+ ++ D+WS G + E + P + LEQ+ R ++
Sbjct: 179 R-FTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYR 221
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 51.5 bits (123), Expect = 1e-06
Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 31/223 (13%)
Query: 362 EEFKCLNRIEEGTYGVVYRA---KD--KRTDEIVALKRLKMEKEKEGFPITSLREINTLL 416
E+ K + I EG +G V RA KD K I LK E + F E+ L
Sbjct: 2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFA----GELEVLC 57
Query: 417 K-AQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIP-------GEV 468
K HPNI+ + + N ++I ++Y + +L++ +R + + G
Sbjct: 58 KLGHHPNIINL--LGACENRGYLYIAIEYAPYG--NLLDFLRKSRVLETDPAFAKEHGTA 113
Query: 469 KCLM-QQLL-------NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPL 520
L QQLL + +L + +HRDL N+L+ K+ DFGL+R +
Sbjct: 114 STLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYV 173
Query: 521 KHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
K + W L Y+T D+WS G + E + +
Sbjct: 174 KKTMGRLPVRWMAIES--LNYSVYTTKSDVWSFGVLLWEIVSL 214
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 51.3 bits (123), Expect = 1e-06
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 35/206 (16%)
Query: 373 GTYGVVYRA---KDKRTDEI-VALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVRE 428
G +G VY+ + +I VA+K L+ E + L E + HP++V +
Sbjct: 18 GAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANK-EILDEAYVMASVDHPHVVRLLG 76
Query: 429 IVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLN-------AVAH 481
I + S + I +M L++ +R+ K Q LLN +++
Sbjct: 77 ICLSSQVQLITQLMPL-----GCLLDYVRNHKDNIGS-------QYLLNWCVQIAKGMSY 124
Query: 482 LHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHY------TPIVVTLWYRSP 535
L + ++HRDL N+L+ +K+ DFGLA+ K Y PI W
Sbjct: 125 LEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIK---WMALE 181
Query: 536 ELLLGCKEYSTPIDMWSVGCIFAEFL 561
+L Y+ D+WS G E +
Sbjct: 182 SILHR--IYTHKSDVWSYGVTVWELM 205
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 50.5 bits (121), Expect = 2e-06
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 54/219 (24%)
Query: 373 GTYGVVY----RAKDKRTDEI-VALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVR 427
G +G VY R +D E+ VA+K L E E L E + K H NIV +
Sbjct: 17 GAFGEVYEGLYRGRDGDAVELQVAVKTLP-ESCSEQDESDFLMEALIMSKFNHQNIVRL- 74
Query: 428 EIVVGSNMDKI--FIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCL-MQQLLNA---VA 480
+G + +++ FI+++ + D+KS + R + P L M+ LL VA
Sbjct: 75 ---IGVSFERLPRFILLELMAGGDLKSFLRENRPR-----PERPSSLTMKDLLFCARDVA 126
Query: 481 ----HLHDNWILHRDLKTSNLLLSHRG---ILKVGDFGLARE-YGS-----------PLK 521
+L +N +HRD+ N LL+ +G + K+ DFG+AR+ Y + P+K
Sbjct: 127 KGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIK 186
Query: 522 HYTPIVVTLWYRSPELLL-GCKEYSTPIDMWSVGCIFAE 559
+ P PE L G +++ D+WS G + E
Sbjct: 187 -WMP---------PEAFLDGI--FTSKTDVWSFGVLLWE 213
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 50.7 bits (121), Expect = 2e-06
Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 389 IVALKRLKMEKEKEG---FPITSLREINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYV 445
+VA+K L+ + K F L+EI + + + PNI+ + + + S D + ++ +Y+
Sbjct: 48 LVAVKMLREDANKNARNDF----LKEIKIMSRLKDPNIIRLLAVCITS--DPLCMITEYM 101
Query: 446 EH-DMKSLMETMRSKKQVFIP-------GEVKCLMQQLLNAVAHLHDNWILHRDLKTSNL 497
E+ D+ + ++ + + Q+ + + +L +HRDL T N
Sbjct: 102 ENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNC 161
Query: 498 LLSHRGILKVGDFGLARE------YGSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMW 551
L+ +K+ DFG++R Y + PI W +LLG +++T D+W
Sbjct: 162 LVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPI---RWMSWESILLG--KFTTASDVW 216
Query: 552 SVGCIFAEFL--CMEPLFTGKSDLEQL 576
+ G E L C E ++ SD EQ+
Sbjct: 217 AFGVTLWEILTLCKEQPYSQLSD-EQV 242
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 50.6 bits (121), Expect = 3e-06
Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 76/273 (27%)
Query: 364 FKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNI 423
F + I G +G V + T+ + A+K +LR+ + L++ Q ++
Sbjct: 3 FVKIKTIGIGAFGEVCLVRKVDTNALYAMK--------------TLRKADVLMRNQAAHV 48
Query: 424 VTVREIVVGSN-------------MDKIFIVMDYVEH-DMKSLMETMRSKKQVFIPGEVK 469
R+I+ ++ D ++ VMDY+ DM SL+ + +F +
Sbjct: 49 KAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLL----IRLGIFEEDLAR 104
Query: 470 CLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA--------REYGSPLK 521
+ +L A+ +H +HRD+K N+L+ G +K+ DFGL +Y
Sbjct: 105 FYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGD 164
Query: 522 HYT-----------------------------------PIVVTLWYRSPELLLGCKEYST 546
H+ +V T Y +PE+LL Y+
Sbjct: 165 HHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLR-TGYTQ 223
Query: 547 PIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
D WSVG I E L +P F + E ++
Sbjct: 224 LCDWWSVGVILYEMLVGQPPFLADTPAETQLKV 256
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 50.0 bits (120), Expect = 3e-06
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 45/233 (19%)
Query: 382 KDKRTDEIVALKRLK---MEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDKI 438
+ +VA+K L+ + +E F L+E+ L + PNI R + V + +
Sbjct: 41 DNADAPVLVAVKVLRPDASDNAREDF----LKEVKILSRLSDPNIA--RLLGVCTVDPPL 94
Query: 439 FIVMDYVEH-DM-----KSLMETMRSKKQV-FIPGEVKCLMQ---QLLNAVAHLHDNWIL 488
++M+Y+E+ D+ K + ET + L+ Q+ + + +L +
Sbjct: 95 CMIMEYMENGDLNQFLQKHVAETSGLACNSKSLS--FSTLLYMATQIASGMRYLESLNFV 152
Query: 489 HRDLKTSNLLLSHRGILKVGDFGLARE-YGS---------PLKHYTPIVVTLWYRSPELL 538
HRDL T N L+ +K+ DFG++R Y S PL PI W E +
Sbjct: 153 HRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPL----PIRWMAW----ESV 204
Query: 539 LGCKEYSTPIDMWSVGCIFAEF--LCMEPLFTGKSD---LEQLSRIFKTMGTP 586
L K ++T D+W+ G E LC E + +D +E F+ G
Sbjct: 205 LLGK-FTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQ 256
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 49.0 bits (117), Expect = 4e-06
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 40/213 (18%)
Query: 370 IEEGTYGVVYRAKDKRTDEI---VALKRLKMEKEKEGFPITSLREINTLLKA-------Q 419
I +G +G VY +D A+K L IT L E+ LK
Sbjct: 3 IGKGHFGCVYHGTLIDSDGQKIHCAVKSLNR--------ITDLEEVEQFLKEGIIMKDFS 54
Query: 420 HPNIVTVREIVV---GSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQ--- 473
HPN++++ I + GS + +V+ Y++H L +RS+ VK L+
Sbjct: 55 HPNVLSLLGICLPSEGSPL----VVLPYMKHG--DLRNFIRSETH---NPTVKDLIGFGL 105
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLKHYTPIVV 528
Q+ + +L +HRDL N +L +KV DFGLAR EY S H +
Sbjct: 106 QVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLP 165
Query: 529 TLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
W L ++++T D+WS G + E +
Sbjct: 166 VKWMALES--LQTQKFTTKSDVWSFGVLLWELM 196
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 49.1 bits (117), Expect = 5e-06
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 23/193 (11%)
Query: 408 SLREINTLLKA-------QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKK 460
S +E N L+ QHPNI+ +G ++ I ++ + ++ L + ++
Sbjct: 35 SSKEQNEFLQQGDPYRILQHPNILQC----LGQCVEAIPYLLVFEYCELGDLKSYLSQEQ 90
Query: 461 QVFIPGEVKCLMQ---QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGL--ARE 515
++ L + ++ V H+H + LH DL N L+ +KVGD+G+ +R
Sbjct: 91 WHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRY 150
Query: 516 YGSPLKHYTPIVVTLWYRSPELL------LGCKEYSTPIDMWSVGCIFAE-FLCMEPLFT 568
++ V L + +PEL+ L E + P ++W++G E F ++
Sbjct: 151 KEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYS 210
Query: 569 GKSDLEQLSRIFK 581
SD E L+ + K
Sbjct: 211 HLSDREVLNHVIK 223
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 48.9 bits (116), Expect = 6e-06
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 20/167 (11%)
Query: 426 VREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQ---VFIPGEVKCLMQ---QLLNA 478
VR + V S ++M+ + D+KS + ++R + + V P +K ++Q ++ +
Sbjct: 72 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADG 131
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE------YGSPLKHYTPIVVTLWY 532
+A+L+ N +HRDL N +++ +K+GDFG+ R+ Y K P+ +
Sbjct: 132 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR----W 187
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFLCM-EPLFTGKSDLEQLSR 578
SPE L ++T D+WS G + E + E + G S+ EQ+ R
Sbjct: 188 MSPESLKD-GVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN-EQVLR 232
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 48.9 bits (116), Expect = 6e-06
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 459 KKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-- 516
+ VF E+ C ++ LH I++RDLK N+LL G +++ D GLA
Sbjct: 102 GRAVFYAAEICCGLE-------DLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 154
Query: 517 GSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQL 576
G +K V T+ Y +PE++ + Y+ D W++GC+ E + G+S +Q
Sbjct: 155 GQTIKGR---VGTVGYMAPEVVKN-ERYTFSPDWWALGCLLYE------MIAGQSPFQQR 204
Query: 577 SRIFK 581
+ K
Sbjct: 205 KKKIK 209
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 48.0 bits (114), Expect = 1e-05
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 362 EEFKCLNRIEEGTYGVVYR--AKDKRTDEIVALKRLKMEKEKEGFPITSLRE----IN-- 413
E+ L + +G++G+VY A+D E +K E SLRE +N
Sbjct: 6 EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNES-----ASLRERIEFLNEA 60
Query: 414 TLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRS---KKQVFIPGEVK 469
+++K + V VR + V S +VM+ + H D+KS + ++R P ++
Sbjct: 61 SVMKGFTCHHV-VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ 119
Query: 470 CLMQ---QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE------YGSPL 520
++Q ++ + +A+L+ +HRDL N +++H +K+GDFG+ R+ Y
Sbjct: 120 EMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGG 179
Query: 521 KHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAE 559
K P+ W L G ++T DMWS G + E
Sbjct: 180 KGLLPV---RWMAPESLKDGV--FTTSSDMWSFGVVLWE 213
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 48.0 bits (114), Expect = 1e-05
Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 372 EGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLR----EINTLLKAQHPNIVTVR 427
EG +G V +A R + ++ KE + LR E N L + HP+++ +
Sbjct: 10 EGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKL- 68
Query: 428 EIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQV----------------FIPGEVKCL 471
S + ++++Y ++ SL +R ++V P E
Sbjct: 69 -YGACSQDGPLLLIVEYAKYG--SLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALT 125
Query: 472 MQQLLN-------AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR---EYGSPLK 521
M L++ + +L + ++HRDL N+L++ +K+ DFGL+R E S +K
Sbjct: 126 MGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVK 185
Query: 522 HYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
+ W + E L Y+T D+WS G + E + +
Sbjct: 186 RSKGRIPVKWM-AIESLFD-HIYTTQSDVWSFGVLLWEIVTL 225
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 47.8 bits (114), Expect = 1e-05
Identities = 50/235 (21%), Positives = 97/235 (41%), Gaps = 54/235 (22%)
Query: 354 AIQGCRSVEEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPIT-----S 408
AI R + ++EGT+G ++ L K KE+E F T S
Sbjct: 2 AISRDR----VTLSDLLQEGTFGRIFYGI---------LIDEKPGKEEEVFVKTVKDHAS 48
Query: 409 LREINTLLK-------AQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMR--- 457
++ LL+ H NI+ + + + + + F++ Y+ ++K ++ R
Sbjct: 49 EIQVTLLLQESCLLYGLSHQNILPILHVCI-EDGEPPFVLYPYMNWGNLKLFLQQCRLGE 107
Query: 458 -SKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR-- 514
+ Q ++ + Q+ +++LH ++H+D+ N ++ +K+ D L+R
Sbjct: 108 ANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDL 167
Query: 515 ---EYGS-------PLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAE 559
+Y P+K W + E L+ KEYS+ D+WS G + E
Sbjct: 168 FPMDYHCLGDNENRPVK---------WM-ALESLVN-KEYSSASDVWSFGVLLWE 211
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This group is
composed of fungal NDR-like proteins including
Saccharomyces cerevisiae CBK1 (or CBK1p),
Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago
maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like
NDR kinase, group members contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. CBK1 is an essential component in the RAM
(regulation of Ace2p activity and cellular
morphogenesis) network. CBK1 and Orb6 play similar roles
in coordinating cell morphology with cell cycle
progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 47.9 bits (114), Expect = 2e-05
Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 58/268 (21%)
Query: 362 EEFKCLNRIEEGTYGVVYRAKDKRTDEIVALKRL---KMEKEKEGFPITSLREINTLLKA 418
E+F + I +G +G V + K T +I A+K L +M K+ + + + R++ L ++
Sbjct: 1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDV--LAES 58
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
P +V++ + ++++M+++ LM TM K F + M + + A
Sbjct: 59 DSPWVVSLYYSFQDAQY--LYLIMEFLPGG--DLM-TMLIKYDTFSEDVTRFYMAECVLA 113
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA---------REYGSPL--------- 520
+ +H +HRD+K N+L+ G +K+ DFGL+ Y L
Sbjct: 114 IEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRI 173
Query: 521 -KHYTPIVVTLW----------------------------YRSPELLLGCKEYSTPIDMW 551
+ V ++ Y +PE+ L + Y D W
Sbjct: 174 DNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQ-QGYGQECDWW 232
Query: 552 SVGCIFAEFLCMEPLFTGKSDLEQLSRI 579
S+G I E L P F ++ E +I
Sbjct: 233 SLGAIMFECLIGWPPFCSENSHETYRKI 260
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 48.5 bits (115), Expect = 2e-05
Identities = 44/263 (16%), Positives = 99/263 (37%), Gaps = 8/263 (3%)
Query: 55 KSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSK 114
++ H E R E E +++ ++ + + + + + + Q+ +
Sbjct: 637 EAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGE 696
Query: 115 EYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVK 174
+ + K + E + + ++ +IE E +E E EA +
Sbjct: 697 GEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE-EVEDEGEGEAEGKHEV 755
Query: 175 DVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAA 234
+ E RK + + + ++E ++ +A + GE G G E + +
Sbjct: 756 ETEGDRKETEHEGETEAEGKEDEDEGEI-QAGEDGEMKGDEGAEGKVEHEGETEAGEKDE 814
Query: 235 GLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEE 294
E +S T D + E EL + A +E DG S S +EE
Sbjct: 815 H------EGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEE 868
Query: 295 ENDENEDKADKKEKKAKKRKKED 317
E +E E++ +++E++ ++ ++ +
Sbjct: 869 EEEEEEEEEEEEEEEEEEEEENE 891
Score = 41.9 bits (98), Expect = 0.002
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 12/169 (7%)
Query: 189 SRSPINKAK-----NEMDVDEAHQRGEDDG-----ARTPPGPAAPESRSRQDLEAAGLVV 238
SR P+ K ++ DV EA GE G G ES + E
Sbjct: 617 SRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETK 676
Query: 239 LTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDE 298
+ES P E+ G + EGE+ G E+ + E ++ + DE E +
Sbjct: 677 GENESEGEIPA--ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIET 734
Query: 299 NEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEKDT 347
E+ + +++ + + + E +R + H + E E E +
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI 783
Score = 38.1 bits (88), Expect = 0.034
Identities = 48/238 (20%), Positives = 81/238 (34%), Gaps = 19/238 (7%)
Query: 100 KHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERL 159
+H ER E ++ E E E EA+ E K + + E E+ ER
Sbjct: 639 EHTGERTGEEGERPTE-AEGENGEESGGEAEQEGETETK-------GENESEGEIPAERK 690
Query: 160 LEAERVKEAYKERVK---DVEQKRKRYRTRSRSRSPIN----KAKNEMDVDEAHQRGEDD 212
E E E + + E + + + + + + E + E GE +
Sbjct: 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Query: 213 GARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAG 272
G + + A DE + E G EG++ E+ AG
Sbjct: 751 GKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAG 810
Query: 273 SEESSQDGSEDSSQDSSSSDEEE----NDENEDKADKKEKKAKKRKKEDASPNESERD 326
++ + SE + D+ DE N EN+ +A + EK D +E E +
Sbjct: 811 EKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEE 868
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 47.4 bits (113), Expect = 2e-05
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 369 RIEEGTYGVVYRAK----DKRTDEI-VALKRLKMEK-EKEGFPITSLREINTLLKAQHPN 422
+ EG +G V +A+ D + VA+K LK + EK+ + S E+ ++ +H N
Sbjct: 19 PLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMI-GKHKN 77
Query: 423 IVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMR------SKKQVFIPGE---VKCLM 472
I+ + + V + +++V++Y H +++ + R S P E K L+
Sbjct: 78 IINL--LGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLV 135
Query: 473 Q---QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE 515
Q+ + L +HRDL N+L++ ++K+ DFGLAR+
Sbjct: 136 SFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARD 181
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 47.3 bits (112), Expect = 2e-05
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 459 KKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-- 516
++ +F E+ C ++ LH ++RDLK N+LL G +++ D GLA +
Sbjct: 102 ERALFYAAEILCGLE-------DLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPE 154
Query: 517 GSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSD 572
G ++ V T+ Y +PE+L + Y+ D W +GC+ E + + F G+ +
Sbjct: 155 GESIRGR---VGTVGYMAPEVLNN-QRYTLSPDYWGLGCLIYEMIEGQSPFRGRKE 206
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 46.2 bits (109), Expect = 4e-05
Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 34/225 (15%)
Query: 360 SVEEFKCLNRIEEGTYGVVYR------AKDKRTDEIVALKRLKMEKEKEGFPITSLRE-- 411
++ + + + E +G VY+ A ++T + VA+K LK + E LRE
Sbjct: 3 NLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQT-QAVAIKTLKDKAE------GPLREEF 55
Query: 412 -INTLLKA--QHPNIVTVREIVVGSN-MDKIF-----------IVMDYVEHDMKSLMETM 456
++++ QHPNIV + +V + IF +VM D+ S +
Sbjct: 56 KHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGS-TDDD 114
Query: 457 RSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY 516
++ K P + ++ Q+ + L + ++H+DL T N+L+ + +K+ D GL RE
Sbjct: 115 KTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREV 174
Query: 517 GSP--LKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAE 559
+ K ++ + + SPE ++ K +S D+WS G + E
Sbjct: 175 YAADYYKLMGNSLLPIRWMSPEAIMYGK-FSIDSDIWSYGVVLWE 218
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 46.1 bits (109), Expect = 5e-05
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 459 KKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREY-- 516
++ +F E+ C ++ L I++RDLK N+LL RG +++ D GLA +
Sbjct: 102 QRAIFYAAELCCGLEDL-------QRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE 154
Query: 517 GSPLKHYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
G ++ V T+ Y +PE++ ++Y+ D W +GC+ E +
Sbjct: 155 GETVRGR---VGTVGYMAPEVINN-EKYTFSPDWWGLGCLIYEMI 195
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 46.4 bits (110), Expect = 6e-05
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 37 RTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQ--SDGGHKSHRR 94
R SS++ + S+ +S R RHR R+R + + RDR + D S R
Sbjct: 13 RGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVR 72
Query: 95 RDEDRKHRDERKAREAQKSKE 115
R DR R R R ++ +
Sbjct: 73 RSRDRPRRRSRSVRSIEQHRR 93
Score = 43.7 bits (103), Expect = 4e-04
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 44 SSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRD 103
S +D+ S + RSR R R R H + +ER + R DR+ D
Sbjct: 12 SRGRDRDRSSERPRRRSRDRS-RFRDRHRRSRERSYREDS-----------RPRDRRRYD 59
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRAR-LERKRYSNPLREKEKIER 152
R R + S +R+ +++ + R R +P + K ++
Sbjct: 60 SRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDK 109
Score = 42.6 bits (100), Expect = 0.001
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 63 RDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRD-ERKAREAQKSKE---YTA 118
RDE R K + RDR++S + R R DR R ER RE + ++ Y +
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 119 REIDELKAKEADLRARLERKRYSNPLREKEKIERELRK 156
R L+ + R+R +R S +R E+ R LR
Sbjct: 61 RSPRSLR-YSSVRRSRDRPRRRSRSVRSIEQHRRRLRD 97
Score = 41.8 bits (98), Expect = 0.002
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 7 PDSLEIKPPQASTQLHKSHHR--SHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRD 64
PD K R S R S S ++ S + + + SR
Sbjct: 5 PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPR 64
Query: 65 ERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKS 113
+ ++R R +S + HRRR DR ++ + + ++S
Sbjct: 65 SLRYSSVRRSRDRPRRRSRSVRSIEQ-HRRRLRDRSPSNQWRKDDKKRS 112
Score = 33.7 bits (77), Expect = 0.50
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 25 HHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHH-RSRH---RDERDRRHHHKEKERDRN 80
H RS + + S S RSR R R R + + R R+
Sbjct: 38 HRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRD 97
Query: 81 KSDQSDGGHKSHRRRDEDRK 100
+S + +R D K
Sbjct: 98 RSPSNQWRKDDKKRSLWDIK 117
Score = 33.3 bits (76), Expect = 0.74
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 102 RDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLE 161
RDE RE +KS R D ++ E R +R R+ + R + ER R++
Sbjct: 1 RDEEPDREREKS-----RGRDRDRSSERPRRRSRDRSRFRD--RHRRSRERSYRED---S 50
Query: 162 AERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPA 221
R + Y R + RY + RSR + + E H+R D + +
Sbjct: 51 RPRDRRRYDSR----SPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRK 106
Query: 222 APESRSRQDLEAAGLVVLT 240
+ RS D++ G ++T
Sbjct: 107 DDKKRSLWDIKPPGYELVT 125
Score = 31.0 bits (70), Expect = 3.8
Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 44/162 (27%)
Query: 156 KERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGAR 215
+E E E+ + ++R + ++R R R+R R R H+R + R
Sbjct: 3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDR---------------HRRSRE---R 44
Query: 216 TPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEE 275
+ + P R R D SRSP R ++ S S E
Sbjct: 45 SYREDSRPRDRRRYD------------SRSPRSLRYSSVRRSRDRPR---RRSRSVRSIE 89
Query: 276 SSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKED 317
+ D S N+ + D K++ K
Sbjct: 90 QHRRRLRDRSP-----------SNQWRKDDKKRSLWDIKPPG 120
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 46.6 bits (111), Expect = 7e-05
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 73 KEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLR 132
+E E + + R + E + E + E REI+ L+ + L
Sbjct: 361 EELEEKLSALLEELEELFEALREELAEL---EAELAEIRNELEELKREIESLEERLERLS 417
Query: 133 ARLERKRYS----NPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTR-S 187
RLE + E+ + E E E L E E E ++R+K++E++ +
Sbjct: 418 ERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477
Query: 188 RSRSPINKAKNEMDVDEAHQR 208
R ++ + +D EA QR
Sbjct: 478 RLEKELSSLEARLDRLEAEQR 498
Score = 43.2 bits (102), Expect = 8e-04
Identities = 59/306 (19%), Positives = 117/306 (38%), Gaps = 35/306 (11%)
Query: 89 HKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLER--KRYSNPLRE 146
+ E+ R E + E Q+ E +EI+ELK++ +LR LE + E
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296
Query: 147 KEKIERELR--KERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPI--NKAKNEMDV 202
E++E E+ +ERL E E E +ER++++++K + + R + + ++
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
Query: 203 DEAHQRGEDDGARTPPGPAAPESRSRQDLEAAG---------LVVLTDESRSPTPQRDEK 253
+EA + E+ + R++L L L E S + +
Sbjct: 357 EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER- 415
Query: 254 PGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKR 313
+ +L + E Q E+ +++ +E+ + + + + + A+ +
Sbjct: 416 --LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQ 473
Query: 314 KKEDASPNESERDVSPHVIMDQDVDMEIELEKDTLPPYLPAIQGCRSVEEFKCLNRIEEG 373
++ E+++S +E D L A QG R+V E G
Sbjct: 474 EELQ----RLEKELS-----------SLEARLDRLEAEQRASQGVRAVLEAL--ESGLPG 516
Query: 374 TYGVVY 379
YG V
Sbjct: 517 VYGPVA 522
Score = 41.6 bits (98), Expect = 0.003
Identities = 72/378 (19%), Positives = 139/378 (36%), Gaps = 30/378 (7%)
Query: 48 DKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDE-DRKHRDERK 106
+ S S R + R E+E ++ + ++E +
Sbjct: 647 EPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEE 706
Query: 107 AREAQKSKEYTAREIDELKAKEADLRARLER--KRYSNPLREKEKIERELRK--ERLLEA 162
R + E R+++ELK + A L LE+ R E E++E EL + ERL E
Sbjct: 707 LRRQLEELE---RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763
Query: 163 ERVKEAYKERVKDVEQKRKRYRTRSRS----RSPINKAKNEMDVDEAHQRGEDDGARTPP 218
E E+ +E + ++++ + + ++ + + E + E +
Sbjct: 764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823
Query: 219 GPAAPESRSRQ----DLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSE 274
E + +LE L L +E + +E +E E
Sbjct: 824 ERLEQEIEELEEEIEELEEK-LDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882
Query: 275 ESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMD 334
E ++ E+ ++ S E +E E ++ E+ K ++ + E E ++
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT 942
Query: 335 QDVDME-----IELEKDTLPPYLPAIQGCRSVEEF-KCLNRIEE--GTYGVVYRAKDKRT 386
+ ++E +E E + L P R++EE+ + R EE + AK+K
Sbjct: 943 LETELEREIERLEEEIEALGPVNL-----RAIEEYEEVEERYEELKSQREDLEEAKEKLL 997
Query: 387 DEIVALKRLKMEKEKEGF 404
+ I L + K E+ KE F
Sbjct: 998 EVIEELDKEKRERFKETF 1015
Score = 37.4 bits (87), Expect = 0.043
Identities = 36/229 (15%), Positives = 79/229 (34%), Gaps = 25/229 (10%)
Query: 103 DERKAREAQKSKEYTAREIDELKAKEADLRARLER--------KRYSNPLREKEKIEREL 154
ERK EA++ E T ++ L+ +L +LE+ +RY E ++E L
Sbjct: 171 KERK-EEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELAL 229
Query: 155 RKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSP----INKAKNEMDVDEAHQRGE 210
+L E + E +E + +E++ + + + E+ + + E
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289
Query: 211 DDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESS 270
+ E + E + L +E + E+ EE + A
Sbjct: 290 LLELK--------EEIEELEGEISLLRERLEELEN----ELEELEERLEELKEKIEALKE 337
Query: 271 AGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDAS 319
E + + +EE +E ++ ++ + +E+ +
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 44.8 bits (106), Expect = 1e-04
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 372 EGTYGVVYRAKDKRTDEI---VALKRLKME----KEKEGFPITSLREINTLLKAQHPNIV 424
EG +G V + + D VA+K +K++ E E F L E + HPN++
Sbjct: 9 EGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEF----LSEAACMKDFDHPNVM 64
Query: 425 TVREIVV-GSNMDKI---FIVMDYVEH-DMKSLMETMRSKKQ-VFIPGEVKCL-MQQLLN 477
+ + S++ KI +++ +++H D+ S + R +P + M +
Sbjct: 65 KLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIAL 124
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR 514
+ +L + +HRDL N +L + V DFGL++
Sbjct: 125 GMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSK 161
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 44.7 bits (105), Expect = 1e-04
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 31/215 (14%)
Query: 370 IEEGTYGVVYRA---KD--KRTDEIVALKRLKMEKEKEGFPITSLREINTLLK-AQHPNI 423
I EG +G V +A KD + I +K + + F E+ L K HPNI
Sbjct: 3 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFA----GELEVLCKLGHHPNI 58
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIP-------GEVKCLM-QQL 475
+ + + + +++ ++Y H +L++ +R + + L QQL
Sbjct: 59 INL--LGACEHRGYLYLAIEYAPHG--NLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 114
Query: 476 L-------NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVV 528
L + +L +HRDL N+L+ + K+ DFGL+R +K +
Sbjct: 115 LHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLP 174
Query: 529 TLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
W L Y+T D+WS G + E + +
Sbjct: 175 VRWMAIES--LNYSVYTTNSDVWSYGVLLWEIVSL 207
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 45.7 bits (109), Expect = 1e-04
Identities = 13/123 (10%), Positives = 36/123 (29%)
Query: 204 EAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGEL 263
+ + G A P A +R AA + + + + P
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 264 AGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNES 323
A +A + ++ + ++++ ++ E E + + + ++E
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 324 ERD 326
Sbjct: 176 GDR 178
Score = 37.2 bits (87), Expect = 0.051
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 40 GSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDR 99
G + + + R R R + + +++ + GG + R RD DR
Sbjct: 212 GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDR 271
Query: 100 KHRDERKAREAQKSKEYTAREIDEL 124
+ R +E RE D L
Sbjct: 272 RGRRGGDGGN---EREPELREDDVL 293
Score = 36.0 bits (84), Expect = 0.12
Identities = 15/113 (13%), Positives = 33/113 (29%)
Query: 27 RSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSD 86
R+ + + + R+ER R +++ R + D+ +
Sbjct: 157 RADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRRE 216
Query: 87 GGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKR 139
+ R+ R +R+ ++E + R R R R
Sbjct: 217 ERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDR 269
Score = 31.0 bits (71), Expect = 3.7
Identities = 16/102 (15%), Positives = 37/102 (36%)
Query: 14 PPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHK 73
+ Q + R + + R G ++ + RDER RR +
Sbjct: 120 SAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRE 179
Query: 74 EKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKE 115
+++ + + ++ + D DR+ R E+ R ++ +
Sbjct: 180 DRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 45.0 bits (106), Expect = 1e-04
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 470 CLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE-YGSP-LKHYTPIV 527
C Q+ + L +HRDL N+LLS ++K+ DFGLAR+ Y P
Sbjct: 178 CYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSAR 237
Query: 528 VTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
+ L + +PE + K Y+T D+WS G + E +
Sbjct: 238 LPLKWMAPESIFD-KVYTTQSDVWSFGVLLWEIFSL 272
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 44.6 bits (105), Expect = 2e-04
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 470 CLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE-YGSP-LKHYTPIV 527
C Q+ + L +HRDL N+LLS ++K+ DFGLAR+ Y P
Sbjct: 183 CYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDAR 242
Query: 528 VTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
+ L + +PE + + Y+ D+WS G + E +
Sbjct: 243 LPLKWMAPETIFD-RVYTIQSDVWSFGVLLWEIFSL 277
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 44.9 bits (106), Expect = 2e-04
Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 11/266 (4%)
Query: 37 RTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRD 96
R S K+ + + S +E+++ +EK++ + K + K
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Query: 97 EDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRK 156
E R +++ K +E +K +E RE ++ + + + + P ++KE E E ++
Sbjct: 139 EKRPPKEKEKEKE-KKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQR 197
Query: 157 ERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGART 216
+ E VK +E + E++++ + R + ++E R +
Sbjct: 198 QA--AREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKK 255
Query: 217 PPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEES 276
P P R+ +P + + A
Sbjct: 256 P----DPSPSMASPETRESSKRTETRPRTSLRPPSARPASARP----APPRVKRKEIVTV 307
Query: 277 SQDGSEDSSQDSSSSDEEENDENEDK 302
QD S+ E + E+ED
Sbjct: 308 LQDAQGVGKIVSNVILEGKKSEDEDD 333
Score = 32.2 bits (73), Expect = 1.5
Identities = 31/190 (16%), Positives = 70/190 (36%), Gaps = 8/190 (4%)
Query: 7 PDSLEIKPPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDER 66
P + K + + K + K+K ++K + K + + +E
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Query: 67 DRRHHHKEKERDRNK----SDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREID 122
R +EK+R+R + + +++++ + + + AREA K K +++
Sbjct: 158 RDRE--EEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEE-PDVN 214
Query: 123 ELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKR 182
E + KE D E S ++ + E+ + ++ + + + KR
Sbjct: 215 EEREKEEDDGKDRET-TTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKR 273
Query: 183 YRTRSRSRSP 192
TR R+
Sbjct: 274 TETRPRTSLR 283
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 44.2 bits (104), Expect = 2e-04
Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 33/218 (15%)
Query: 372 EGTYGVVYRA------KDKRTDEI-VALKRLKME-KEKEGFPITSLREINTLLKAQHPNI 423
EG +G V A KDK + + VA+K LK + EK+ + S E+ ++ +H NI
Sbjct: 25 EGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMI-GKHKNI 83
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKK----------------QVFIPGE 467
+ + + + ++++++Y +L E +R+++ Q+
Sbjct: 84 INL--LGACTQDGPLYVIVEYASKG--NLREYLRARRPPGMEYSYDIARVPDEQMTFKDL 139
Query: 468 VKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSP--LKHYTP 525
V C Q+ + +L +HRDL N+L++ ++K+ DFGLAR+ + K T
Sbjct: 140 VSC-TYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTN 198
Query: 526 IVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
+ + + +PE L + Y+ D+WS G + E +
Sbjct: 199 GRLPVKWMAPEALFD-RVYTHQSDVWSFGVLMWEIFTL 235
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 44.3 bits (104), Expect = 2e-04
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 40/213 (18%)
Query: 372 EGTYGVVYRAKDKRTDEI--VALKRLKM----EKEKEGFPITSLREINTLLKAQHPNIVT 425
EG +G V + + D I VA+K +K+ E E F L E + + HPN++
Sbjct: 9 EGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDF----LSEAVCMKEFDHPNVMR 64
Query: 426 VREIVVGSNMDKIF----IVMDYVEH-DMKSLMETMRSKKQ-VFIPGE--VKCLMQQLLN 477
+ + + + + + +++ +++H D+ S + R ++P + VK M + +
Sbjct: 65 LIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVK-FMTDIAS 123
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVTLWYRSPEL 537
+ +L +HRDL N +L+ + V DFGL+++ I +YR +
Sbjct: 124 GMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKK----------IYNGDYYRQGRI 173
Query: 538 L-----------LGCKEYSTPIDMWSVGCIFAE 559
L + Y+T D+WS G E
Sbjct: 174 AKMPVKWIAIESLADRVYTTKSDVWSFGVTMWE 206
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 44.4 bits (105), Expect = 3e-04
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 38/195 (19%)
Query: 348 LPPYLPAIQGCRSVEEFKCLNRIEEGTYGVVYRA----KDKRTDEIVALKRLKMEKEKEG 403
L P + ++F ++ EG +GVVY+A K + + LK+ E
Sbjct: 118 LAPLEGLFRPSFKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEI 177
Query: 404 FPITSLREINTLLKAQHPN-----IVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRS 458
+ +N ++ PN + E V D+ ++V Y +L + M+S
Sbjct: 178 W-------MNERVRRACPNSCADFVYGFLEPVSSKKEDEYWLVWRYEGES--TLADLMQS 228
Query: 459 KK-----QVFIPGEVKCL--------------MQQLLNAVAHLHDNWILHRDLKTSNLLL 499
K+ + ++ G+V+ L M+Q+L A+ LH I+HRD+K N++
Sbjct: 229 KEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIF 288
Query: 500 SH-RGILKVGDFGLA 513
S G K+ D G A
Sbjct: 289 SEGSGSFKIIDLGAA 303
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 44.7 bits (106), Expect = 3e-04
Identities = 34/248 (13%), Positives = 84/248 (33%), Gaps = 9/248 (3%)
Query: 60 SRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAR 119
+E++ + K + + K+ + K ++ E +K + + + R
Sbjct: 1144 QEEVEEKEIAKEQRLKSKTKGKASKLR---KPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Query: 120 EIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQK 179
+ K K D + + + E+ + + +K + + K + +D ++
Sbjct: 1201 VDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEF 1260
Query: 180 RKRYRTRSRSR----SPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAG 235
++ ++ + GE +G P P + + R + A
Sbjct: 1261 SSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAA 1320
Query: 236 LVVLTDESRSPTPQRDEKPGTGQEEGELAGSAES--SAGSEESSQDGSEDSSQDSSSSDE 293
L + ++ K Q + +SS + +DS D S ++
Sbjct: 1321 LKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDED 1380
Query: 294 EENDENED 301
+E+DE++D
Sbjct: 1381 DEDDEDDD 1388
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 43.5 bits (102), Expect = 3e-04
Identities = 44/196 (22%), Positives = 90/196 (45%), Gaps = 24/196 (12%)
Query: 410 REINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSK--------- 459
+E + + + HPNIV + +V + + ++ +Y+ D+ + MRS
Sbjct: 56 QEASLMAELHHPNIVCLLGVV--TQEQPVCMLFEYLNQGDLHEFL-IMRSPHSDVGCSSD 112
Query: 460 -----KQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR 514
K G+ + Q+ + +L ++ +H+DL N+L+ + +K+ D GL+R
Sbjct: 113 EDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSR 172
Query: 515 E-YGSPLKHYTP-IVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLC--MEPLFTGK 570
E Y + P ++ + + PE ++ K +S+ D+WS G + E ++P + G
Sbjct: 173 EIYSADYYRVQPKSLLPIRWMPPEAIMYGK-FSSDSDIWSFGVVLWEIFSFGLQPYY-GF 230
Query: 571 SDLEQLSRIFKTMGTP 586
S+ E + + K P
Sbjct: 231 SNQEVIEMVRKRQLLP 246
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 43.7 bits (103), Expect = 3e-04
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLARE-YGSPLKHYT---PIVVTLWYRSPELLLGCKE 543
+HRDL N+LLS ++K+ DFGLAR+ Y P Y + L + +PE + K
Sbjct: 195 IHRDLAARNILLSENNVVKICDFGLARDIYKDP--DYVRKGDARLPLKWMAPESIFD-KV 251
Query: 544 YSTPIDMWSVGCIFAE 559
Y+T D+WS G + E
Sbjct: 252 YTTQSDVWSFGVLLWE 267
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 44.1 bits (104), Expect = 3e-04
Identities = 22/107 (20%), Positives = 50/107 (46%)
Query: 241 DESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENE 300
+E R +R+ + + + S+ S +SQ+ E+ S + +EEE +E E
Sbjct: 400 EEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEE 459
Query: 301 DKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEKDT 347
+++++E + ++ ++E + N SE ++ D D + E +
Sbjct: 460 QESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERR 506
Score = 32.6 bits (74), Expect = 1.4
Identities = 45/207 (21%), Positives = 73/207 (35%), Gaps = 36/207 (17%)
Query: 152 RELRKERLLEAERVKEA---YKERVKDVE-------QKRKRYRTRSRSRSPINKAKNEMD 201
R+LR R + R++E Y + D E Q+R+R T SRS P +K
Sbjct: 371 RKLRSNREVAVSRLEEVISKYAMKQDDTEEEERRKRQERERQGTSSRSSDP---SKASST 427
Query: 202 VDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEG 261
E+ P A+ ES + +E +E + E E+
Sbjct: 428 SGES------------PSMASQESEEEESVEEE-----EEEEEEEEEEEQESEEEEGEDE 470
Query: 262 ELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPN 321
E E+ GSEE + SE D EE +E+ ++ + + + +
Sbjct: 471 EEEEEVEADNGSEEEMEGSSE------GDGDGEEPEEDAERRNSEMAGISRMSEGQQPRG 524
Query: 322 ESERDVSPHVIMDQDVDMEIELEKDTL 348
S + SP Q M+ E +
Sbjct: 525 SSVQPESPQEEPLQPESMDAESVGEES 551
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 42.6 bits (101), Expect = 4e-04
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 440 IVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLL 498
IVM+Y+E +K L+ + E L +++ V LH I+H DL TSN++
Sbjct: 76 IVMEYIEGEPLKDLINSNGM--------EELELSREIGRLVGKLHSAGIIHGDLTTSNMI 127
Query: 499 LSHRGILKVGDFGLAR 514
LS I + DFGLA
Sbjct: 128 LSGGKIYLI-DFGLAE 142
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 43.7 bits (103), Expect = 4e-04
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVT------LWYRSPELLLGC 541
+HRDL N+LL+H I K+ DFGLAR+ +++ + VV + + +PE + C
Sbjct: 236 IHRDLAARNILLTHGRITKICDFGLARD----IRNDSNYVVKGNARLPVKWMAPESIFNC 291
Query: 542 KEYSTPIDMWSVGCIFAEFLCM 563
Y+ D+WS G + E +
Sbjct: 292 V-YTFESDVWSYGILLWEIFSL 312
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 43.5 bits (102), Expect = 4e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLARE------YGSPLKHYTPIVVTLWYRSPELLLGC 541
+HRDL N+LL+ I+K+ DFGLAR+ Y S + P+ + +PE +
Sbjct: 259 VHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK----WMAPESIFD- 313
Query: 542 KEYSTPIDMWSVGCIFAEFLCM 563
Y+T D+WS G + E +
Sbjct: 314 NLYTTLSDVWSYGILLWEIFSL 335
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 43.9 bits (104), Expect = 4e-04
Identities = 36/214 (16%), Positives = 86/214 (40%), Gaps = 6/214 (2%)
Query: 41 SSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRR-RDEDR 99
S + + K+ + + +R + + ++R+ + + + + R R+E+R
Sbjct: 581 SGGEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENR 640
Query: 100 KHRDERKAREAQKSKEYTAREIDELKAKEADLRA-RLERKRYSNPLREKEKIERELRKER 158
++R + + + A+ + A ++ + ++ +A R ER+R N EK + ++E +
Sbjct: 641 RNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRN--DEKRQAQQEAKALN 698
Query: 159 LLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPP 218
+ E + +ERV+ V+ +RK+ + + R I ++ E V +
Sbjct: 699 VEEQSVQETEQEERVQQVQPRRKQRQLNQKVR--IEQSVAEEAVAPVVEETVAAEPVVQE 756
Query: 219 GPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDE 252
PA + L + + RD
Sbjct: 757 VPAPRTELVKVPLPVVAQTAPEQDEENNAENRDN 790
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 43.9 bits (104), Expect = 5e-04
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLE--RKRY----------SNPLREKEKIE 151
E +E +K E REI+E+ ++ +LR LE K +E E +E
Sbjct: 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251
Query: 152 RELRK--ERLLEAERVKEAYKERVKDVEQKRKR----------YRTRSRSRSPINKAKNE 199
RK E++ E E E K+ ++++E+K K Y S E
Sbjct: 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
Query: 200 MDVDEA 205
++ +
Sbjct: 312 IEKRLS 317
Score = 36.2 bits (84), Expect = 0.095
Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 90 KSHRRRDEDRKHRDERKAREAQKSKEYTAR---EIDELKAKEADLRARLERKRYSNPLRE 146
K + E + ++ E K+ E A ++EL+ + +L + + Y E
Sbjct: 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREE 667
Query: 147 KEKIERELR--KERLLEAERVKEAYKERVKDV-EQKRKRYRTRSRSRSPINKAKNEM 200
++ REL + L E E+ +E K+ ++ + E+ +R + + + KA +
Sbjct: 668 YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERV 723
Score = 34.7 bits (80), Expect = 0.30
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 103 DERKAREAQKSKEYTAREIDELKAKEA------DLRARLERKRYSNPLREKEKIERELRK 156
E + E +K + + ++EL+ + + LER + EK+E+E
Sbjct: 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE--- 392
Query: 157 ERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEM 200
L E E+ KE +E + + + + + KA E+
Sbjct: 393 --LEELEKAKEEIEEEISKITARIGELKKEIKEL---KKAIEEL 431
Score = 33.9 bits (78), Expect = 0.58
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 97 EDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRA-RLERKRYSNPLREKEKIERELR 155
E K + E K RE ++ E +EI+EL+ K +L+ + + + Y E+ ELR
Sbjct: 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR 310
Query: 156 K--ERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEM 200
+ +RL E +ER+K++E+K +R + + K E+
Sbjct: 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
Score = 32.3 bits (74), Expect = 1.6
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 72 HKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADL 131
H+ E + K ++ + K R + E++ E +K+KE EI ++ A+ +L
Sbjct: 361 HELYEEAKAKKEELERLKK---RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
Query: 132 RARL-ERKRYSNPLREKEKI----ERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTR 186
+ + E K+ L++ + REL +E + + E Y +K +E++ K +
Sbjct: 418 KKEIKELKKAIEELKKAKGKCPVCGRELTEE---HRKELLEEYTAELKRIEKELKEIEEK 474
Query: 187 SR 188
R
Sbjct: 475 ER 476
>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase
[Signal transduction mechanisms].
Length = 204
Score = 42.3 bits (100), Expect = 5e-04
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 436 DKIFIVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKT 494
D IVM+Y+E +K +E R L++++ V LH I+H DL T
Sbjct: 72 DNGLIVMEYIEGELLKDALEEARPD-----------LLREVGRLVGKLHKAGIVHGDLTT 120
Query: 495 SNLLLSHRGILKVGDFGLAR 514
SN++LS I + DFGL
Sbjct: 121 SNIILSGGRIYFI-DFGLGE 139
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 43.1 bits (101), Expect = 6e-04
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIV---VTL 530
Q+ + +L +HRDL N+L++ ++K+ DFGLAR+ + + +Y + +
Sbjct: 142 QVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHN-IDYYKKTTNGRLPV 200
Query: 531 WYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFK 581
+ +PE L + Y+ D+WS G + E + +E+L ++ K
Sbjct: 201 KWMAPEALFD-RVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLK 250
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 43.1 bits (101), Expect = 8e-04
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 212 DGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSA 271
+GAR P A R AA D+ + G ++
Sbjct: 399 NGARGSP--MAAPEEGRAAAAAAAANAPADQDVEAEAHDEFDQDPGAPAHADRADSDEDD 456
Query: 272 GSEESSQDGSEDSSQDSSSSD-------EEENDENED 301
E+ S D D DS SS E+E+D +D
Sbjct: 457 MDEQESGDERADGEDDSDSSYSYSTTSSEDESDSADD 493
Score = 34.2 bits (78), Expect = 0.41
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 216 TPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEE 275
TP PAA + + A + + P EEG A A ++A +
Sbjct: 367 TPAEPAALFVDGNEVIAAGAAAAMIAAAERAANGARGSPMAAPEEGRAA--AAAAAANAP 424
Query: 276 SSQD-----GSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNE 322
+ QD E + + + D +ED D++E ++ ED S +
Sbjct: 425 ADQDVEAEAHDEFDQDPGAPAHADRADSDEDDMDEQESGDERADGEDDSDSS 476
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 42.8 bits (101), Expect = 9e-04
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 73 KEKER---DRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEA 129
KE+ER ++ + +R + + ER E + K RE++ELK +
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELK----RELEELKREIE 453
Query: 130 DLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKR 182
L + LER R +R+K + +RE+R R ER+++ +E+ K VE+ ++
Sbjct: 454 KLESELERFRRE--VRDKVRKDREIR-ARDRRIERLEKELEEKKKRVEELERK 503
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 42.3 bits (99), Expect = 0.001
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 372 EGTYGVVYRAK----DKRTDEIVALKRLKMEKE----KEGFPITSLREINTLLKAQHPNI 423
EG +G V RA+ DK + +KM K+ K+ + S E+ L+ +H NI
Sbjct: 22 EGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLI-GKHKNI 80
Query: 424 VTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKK----------------QVFIPGE 467
+ + + V + ++++++Y +L E +R+++ Q+
Sbjct: 81 INL--LGVCTQEGPLYVIVEYAAKG--NLREFLRARRPPGPDYTFDITKVPEEQLSFKDL 136
Query: 468 VKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE------YGSPLK 521
V C Q + + +L +HRDL N+L++ ++K+ DFGLAR Y
Sbjct: 137 VSCAYQ-VARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSN 195
Query: 522 HYTPIVVTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
P+ + +PE L + Y+ D+WS G + E +
Sbjct: 196 GRLPVK----WMAPEALFD-RVYTHQSDVWSFGILMWEIFTL 232
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 42.4 bits (99), Expect = 0.001
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 468 VKCLMQQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA 513
+K +M+Q+L + LH I+HRD+K NLL++ G +K+ DFG A
Sbjct: 311 IKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAA 356
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 41.4 bits (97), Expect = 0.001
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 36/204 (17%)
Query: 376 GVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNM 435
G +R K + L+ E+ F L+E+ + HPN++ +G +
Sbjct: 14 GEAHRGMSKARVVVKELRASATPDEQLLF----LQEVQPYRELNHPNVLQC----LGQCI 65
Query: 436 DKI--FIVMDYVEH-DMKSLMETMRSKKQVFIPGEVKCLMQQ-----LLNAVAHLHDNWI 487
+ I +V+++ D+K+ + + + + + Q + + + LH
Sbjct: 66 ESIPYLLVLEFCPLGDLKNYLR----SNRGMVAQMAQKDVLQRMACEVASGLLWLHQADF 121
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLARE------YGSPLKHYTPIVVTLWYRSPELL--- 538
+H DL N L+ +K+GD+GLA E Y + H P L + +PEL+
Sbjct: 122 IHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVP----LRWLAPELVEIR 177
Query: 539 ---LGCKEYSTPIDMWSVGCIFAE 559
L K+ + ++WS+G E
Sbjct: 178 GQDLLPKDQTKKSNIWSLGVTMWE 201
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 41.5 bits (97), Expect = 0.001
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
H IV + I G+++ +V SL++ +R + P + Q+ +
Sbjct: 68 HAYIVRLLGICPGASLQ---LVTQLSPLG--SLLDHVRQHRDSLDPQRLLNWCVQIAKGM 122
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHY------TPIVVTLWYR 533
+L ++ ++HR+L N+LL I+++ DFG+A K Y TPI W
Sbjct: 123 YYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIK---WMA 179
Query: 534 SPELLLGCKEYSTPIDMWSVGCIFAEFL 561
+L G Y+ D+WS G E +
Sbjct: 180 LESILFG--RYTHQSDVWSYGVTVWEMM 205
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 41.9 bits (98), Expect = 0.001
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 21/209 (10%)
Query: 363 EFKCLNRIEEGTYGVVYRA----KDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKA 418
EFK + + G +G VY+ + ++ VA+K L+ E L E +
Sbjct: 8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR-EATSPKANKEILDEAYVMASV 66
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
+P++ + I + S + I +M + L++ +R K + Q+
Sbjct: 67 DNPHVCRLLGICLTSTVQLITQLMPF-----GCLLDYVREHKDNIGSQYLLNWCVQIAKG 121
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHY------TPIVVTLWY 532
+ +L + ++HRDL N+L+ +K+ DFGLA+ G+ K Y PI W
Sbjct: 122 MNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIK---WM 178
Query: 533 RSPELLLGCKEYSTPIDMWSVGCIFAEFL 561
+L + Y+ D+WS G E +
Sbjct: 179 ALESILH--RIYTHQSDVWSYGVTVWELM 205
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 42.0 bits (99), Expect = 0.002
Identities = 52/282 (18%), Positives = 98/282 (34%), Gaps = 25/282 (8%)
Query: 73 KEKERDRNKSDQSDGGHKSHRRRDEDRKHRD---ERKAREAQKSKEYTAREIDELKAKEA 129
+ K ++ S++ + DED D E +K + E DE +
Sbjct: 315 RRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLL 374
Query: 130 DLR--ARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRS 187
++ R E ++ E E++ REL E E E E R+++ +
Sbjct: 375 SMKFMQRAEARKKEENDAEIEELRRELEGE-----EESDEEENEEPSKKNVGRRKFGPEN 429
Query: 188 RSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPT 247
+ +K + + +E ++ E D + EA ++ +
Sbjct: 430 GEKEAESKKLKKENKNEFKEKKESDEEEE----------LEDEEEAK-----VEKVANKL 474
Query: 248 PQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKE 307
+R EK +EE EL + + + S+ SSS ++ KA K
Sbjct: 475 LKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKV 534
Query: 308 KKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEKDTLP 349
KK KK++K ++ + + D + E + E L
Sbjct: 535 KKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEELPFLF 576
Score = 40.0 bits (94), Expect = 0.007
Identities = 58/343 (16%), Positives = 111/343 (32%), Gaps = 67/343 (19%)
Query: 68 RRHHHKEKERDRNKSDQSDGG----------HKSHRRRDEDR---KHRDERK-AREAQKS 113
R H KEK ++ K + K RRR E+R KH++ K A+ K+
Sbjct: 232 HRVHKKEKLKEELKEFEELVKADPEAALEELEKLERRRAEERMTLKHKNTSKWAKSMLKT 291
Query: 114 K-----EYTAREIDELKAKEADLRARLERKRYSN-------------------------- 142
E + ++E + +LR ++E K S
Sbjct: 292 GRAKYDEEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENP 351
Query: 143 -PLREKEKIERELR----KERLLEAERVKEAYKER----VKDVEQKRKRYRTRSRSRSPI 193
LR+K +E LL + ++ A + ++E+ R+ S
Sbjct: 352 WMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEE 411
Query: 194 NKAKNEMDV---------DEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESR 244
N+ ++ +V E + + ++ ++
Sbjct: 412 NEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVA 471
Query: 245 SPTPQRDEKPGTGQEEGEL--AGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDK 302
+ +R EK +EE EL + S S + + SS D+ N ++
Sbjct: 472 NKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAA 531
Query: 303 ADKKEKKAKKR--KKEDASPNESERDVSPHVIMDQDVDMEIEL 343
K+KK K++ +D +E + + + D E+
Sbjct: 532 VKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEELPF 574
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 41.8 bits (98), Expect = 0.002
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 488 LHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVT------LWYRSPELLLGC 541
+HRD+ N+LL+ + K+ DFGLAR+ + + + VV + + +PE + C
Sbjct: 234 IHRDVAARNVLLTDGRVAKICDFGLARD----IMNDSNYVVKGNARLPVKWMAPESIFDC 289
Query: 542 KEYSTPIDMWSVGCIFAE 559
Y+ D+WS G + E
Sbjct: 290 V-YTVQSDVWSYGILLWE 306
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 41.5 bits (97), Expect = 0.002
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 29/214 (13%)
Query: 370 IEEGTYGVVYRAKDK----RTDEIVALKRLKMEKEKEGFPITSLREINTLLK-AQHPNIV 424
I EG +G V +A+ K R D A+KR+K K+ + E+ L K HPNI+
Sbjct: 15 IGEGNFGQVLKARIKKDGLRMD--AAIKRMKEYASKDDHRDFA-GELEVLCKLGHHPNII 71
Query: 425 TVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQV------FIPGEVKCLM--QQLL 476
+ + + +++ ++Y H +L++ +R + + I + QQLL
Sbjct: 72 NL--LGACEHRGYLYLAIEYAPHG--NLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 127
Query: 477 NAVA-------HLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVT 529
+ A +L +HRDL N+L+ + K+ DFGL+R +K +
Sbjct: 128 HFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPV 187
Query: 530 LWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
W L Y+T D+WS G + E + +
Sbjct: 188 RWMAIES--LNYSVYTTNSDVWSYGVLLWEIVSL 219
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 41.2 bits (96), Expect = 0.002
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE--YGSPLKHYTPIVVTLW 531
Q+ + +L +HRDL N+L++ ++K+ DFGLAR+ + K T + +
Sbjct: 148 QVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK 207
Query: 532 YRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
+ +PE L + Y+ D+WS G + E +
Sbjct: 208 WMAPEALFD-RIYTHQSDVWSFGVLLWEIFTL 238
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 41.4 bits (97), Expect = 0.003
Identities = 33/139 (23%), Positives = 44/139 (31%), Gaps = 27/139 (19%)
Query: 207 QRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKP-------GTGQE 259
Q+ D ++T + S DL+ L+ S Q EKP
Sbjct: 336 QKQYDPSSKTSTNSQSGTSMLEDDLK------LSSSEDSDEEQATEKPPSRNTPPSAPSS 389
Query: 260 EGELAGSAESSAGSE-ESSQDGSEDSSQDSSSSDEEENDENEDKA-------------DK 305
E A S+ S+ S S DS +SSSSD EEN+ + D
Sbjct: 390 NPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTASPEPEPPSTNKWQLDN 449
Query: 306 KEKKAKKRKKEDASPNESE 324
K K A S
Sbjct: 450 WLNKVNPHKVSPAESVSSN 468
Score = 32.2 bits (73), Expect = 2.0
Identities = 69/363 (19%), Positives = 131/363 (36%), Gaps = 40/363 (11%)
Query: 13 KPPQASTQLHKSHHRSHKDK---HSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRR 69
P S + + + + SS + S KSSS +++R R
Sbjct: 459 VSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPESKEPPPKSSS----------KEKRRPR 508
Query: 70 HHHKEKERDRNKSDQSDGGHKSHRRRDEDRKH--RDERKAREAQKSKEYTAREIDELKAK 127
K E R K +RR +K + E+ + +++ E L
Sbjct: 509 TAQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDERTGLRPESEPGTLPYG 568
Query: 128 EADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRT-R 186
+ K + K +E + AE K YK K V + R+ T
Sbjct: 569 SSVQTPPDRPKAATKG-SRKPSPRKEPKSSVPPAAE--KRKYKSPSKIVPKSREFIETDS 625
Query: 187 SRSRSPINKA---KNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDES 243
S S SP +++ ++ + + RTP ++ S++ + + E
Sbjct: 626 SSSDSPEDESLPPSSQSPGNTESSKESCASLRTPVCRSSVGSQNDLSKDRLLSPMRETEL 685
Query: 244 RSPTPQRDEK---------------PGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDS 288
SP +E+ PG ++G AE + S Q S+ +S+ S
Sbjct: 686 LSPLRDSEERYSLWVKIDLDLLSRIPGHPYKKGVPPKPAEKDSLSAPKKQT-SKTASEKS 744
Query: 289 SSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQD-VDMEIELEKDT 347
SS + ++ +N+++ADK E K ++ +++ +S + S H +++ E++
Sbjct: 745 SSKGKRKH-KNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEEM 803
Query: 348 LPP 350
LP
Sbjct: 804 LPS 806
Score = 30.7 bits (69), Expect = 6.0
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 18 STQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDR------RHH 71
S+ K H S K T SS + S KS S+HR + H
Sbjct: 812 SSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTKSSSKSSSTSKHRKTEGKGSSTSKEHK 871
Query: 72 HKEKERDRNKSDQ-----SDGGHKSHRRR--DEDRKHRDERKAREAQKSK 114
+ S S+G K R + +DR H + +EA+K K
Sbjct: 872 GSSGDTPNKASSFPVPPLSNGSSKPRRPKLVFDDRVHSADYYMQEAKKLK 921
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 41.4 bits (98), Expect = 0.003
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLR----EKE 148
R E + E +EA+K KE + ++L+ +E L E++ ++ E +
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE-AQQAIKEAKKEAD 587
Query: 149 KIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNE 199
+I +ELR+ + VK ++ + RKR + + K + E
Sbjct: 588 EIIKELRQLQKGGYASVKA------HELIEARKRLNKANEKKEKKKKKQKE 632
Score = 33.3 bits (77), Expect = 0.72
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 120 EIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQK 179
+++EL A +L LE+K E+ E L+ EAE++KE +E+ + ++++
Sbjct: 517 KLNELIASLEELERELEQKA--------EEAEALLK-----EAEKLKEELEEKKEKLQEE 563
Query: 180 RKRYRTRSRS--RSPINKAKNEMD 201
+ + + I +AK E D
Sbjct: 564 EDKLLEEAEKEAQQAIKEAKKEAD 587
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 41.0 bits (96), Expect = 0.003
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 14/150 (9%)
Query: 51 SSQHKSHHRSRHRDERDRRHHHKEKERDRNK------------SDQSDGGHKSHRRRDED 98
+ + K HH + R+++ K + + + + R +
Sbjct: 280 TDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAE 339
Query: 99 RKHRDERKAREAQKSKEYTAREIDELKAKEADLR-ARLERKRYSNPLREKEKIERELRKE 157
+ RK AQK + REI+ +E AR +R + ++K I+ ++
Sbjct: 340 KNEAKARKKEIAQKRRA-AEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNED 398
Query: 158 RLLEAERVKEAYKERVKDVEQKRKRYRTRS 187
E E K + + + R ++
Sbjct: 399 TPSENEESKGSPPQVEATTTAEPNREPSQE 428
Score = 35.6 bits (82), Expect = 0.12
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 6/146 (4%)
Query: 89 HKSH--RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLRE 146
K H +R + R+ + E+KA + I +A E +K + E
Sbjct: 283 FKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNE 342
Query: 147 KEKIERELRKERLLEAERV--KEAYKERVKDVEQKRKRYRT-RSRSRSPINKAKNEMDVD 203
+ ++E+ ++R AER +EA +ER + + R R +++ + I+ + NE
Sbjct: 343 AKARKKEIAQKRR-AAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPS 401
Query: 204 EAHQRGEDDGARTPPGPAAPESRSRQ 229
E + A P Q
Sbjct: 402 ENEESKGSPPQVEATTTAEPNREPSQ 427
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 40.6 bits (95), Expect = 0.004
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 207 QRGEDDGARTPPGPAAPE-----SRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEG 261
+ E G +T P A + V + E S P DE G
Sbjct: 684 EEREQTGEKTAPPSTAYTKLVYLEDGDPSSSESRTTVCSPEDSSLRPLLDEGSKV---SG 740
Query: 262 ELAGSAESSAGSEESSQDGSEDSS--QDSSSSDEEENDENEDKADKKEKKAKKRKKED 317
E A + E S G + SS + E+E D+++ ++KK+ +K+E+
Sbjct: 741 EQAPTVEESRGRSSTDSSREPLSSPRRRRGRRPEDELDDDDGDDAGEDKKSPWQKREE 798
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is
a family of eukaryotic proteins of unknown function.
Some of the proteins in this family are putative nucleic
acid binding proteins.
Length = 158
Score = 38.7 bits (90), Expect = 0.005
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 44 SSQQDKSSSQHKSHHRSRHRDERDR-RHHHKEKERDRNKSDQSDGGHKSHRRRD------ 96
+ +S + + RSR RD R+R R + +ERDR + +S H+S R R
Sbjct: 2 GRSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRS 61
Query: 97 -----EDRKHRDERKAREAQKSKEYTAREIDELKAKEAD 130
R+ R + ++A++ K+ +++ + + E
Sbjct: 62 RSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGK 100
Score = 29.5 bits (66), Expect = 6.0
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 136 ERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSP 192
R R R +++ ER + R E +R + + + R R RSRSRSP
Sbjct: 10 RRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSP 66
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional.
Length = 279
Score = 39.8 bits (93), Expect = 0.006
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 15 PQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKE 74
H H H H H HG + ++ +++ H H ++ RR +E
Sbjct: 115 NWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAHERAHANDIKRRFDGRE 174
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 40.3 bits (94), Expect = 0.006
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 242 ESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENED 301
+ PT E+ G G+ EG+ + + S ++ S+ G E+ Q S ++ DE++D
Sbjct: 216 DDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQ---SDQDDLPDESDD 272
Query: 302 KADKKEKKAKKRKKEDASPNE 322
++ + + + S
Sbjct: 273 DSETP-GEGARPARPFTSTGG 292
Score = 32.6 bits (74), Expect = 1.1
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 239 LTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDE 298
L +E T DE+ G ++ + + + G E + Q+S ++D E
Sbjct: 199 LAEEMGDDTESEDEEDG---DDDQPTENEQEEQGEGEGEGQ-EGSAPQESEATDRESESG 254
Query: 299 NEDKADKKEKKAKKRKKEDA-SPNESERDVSPHVIMDQDVDMEI 341
E+ + +D+ +P E R P + D ++
Sbjct: 255 EEEMVQSDQDDLPDESDDDSETPGEGARPARPFTSTGGEPDYKV 298
Score = 29.9 bits (67), Expect = 9.3
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 256 TGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKK 315
E E G S E+ D ++ Q+ E E E + +E +A R+
Sbjct: 195 RSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQE---GSAPQESEATDRES 251
Query: 316 EDASPNESERD 326
E + D
Sbjct: 252 ESGEEEMVQSD 262
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by
an N-terminal arginine-rich, low complexity domain
followed by three (or in the case of 4 H. sapiens
paralogs, two) RNA recognition domains (rrm: pfam00706).
These splicing factors are closely related to the U2AF
splicing factor family (TIGR01642). A homologous gene
from Plasmodium falciparum was identified in the course
of the analysis of that genome at TIGR and was included
in the seed.
Length = 457
Score = 39.9 bits (93), Expect = 0.006
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 37 RTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRD 96
R G + + + +S RSR RD R RR ++ R R +S ++ +R R
Sbjct: 5 RERGRLRNDTRRSDKGRERSRRRSRSRD-RSRRRRDRDYYRGRRGRSRSRSPNRYYRPRG 63
Query: 97 EDRKHRDERKAREAQKSKEYTAREIDELK--AKEADLRARLERKRY 140
+ RD+R++ + T E D+ + L+AR ER Y
Sbjct: 64 DRSYRRDDRRSGR-NTKEPLTEAERDDRTVFVLQLALKAR-ERDLY 107
Score = 38.3 bits (89), Expect = 0.020
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 55 KSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSK 114
+ R R R+ D R K +ER R +S D +S RRRD D +R R+ R +S
Sbjct: 3 RDRERGRLRN--DTRRSDKGRERSRRRSRSRD---RSRRRRDRD-YYRG-RRGRSRSRSP 55
Query: 115 EYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERL---LEAERVKEAYKE 171
R + + D R+ PL E E+ +R + +L + E + +
Sbjct: 56 NRYYRPRGDRSYRRDDRRSGRNT---KEPLTEAERDDRTVFVLQLALKARERDLYEFFSK 112
Query: 172 --RVKDVEQKRKRYRTRSR 188
+V+DV+ + R RS+
Sbjct: 113 VGKVRDVQCIKDRNSRRSK 131
Score = 36.8 bits (85), Expect = 0.058
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 16/126 (12%)
Query: 26 HRSHKDKHSSHRTHGSSSSSQQDKSS-SQHKSHHRSRHRDERDRR----HHHKEKERDRN 80
R+ + R S +D+S + + ++R R R R + + R
Sbjct: 10 LRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRSYRR 69
Query: 81 KSDQSDGGHKSHRRRDEDRKHRDERKAREA---QKSKEYTAREIDELKAKEADLR-ARLE 136
+ R ++ ER R Q + + R++ E +K +R +
Sbjct: 70 DD-------RRSGRNTKEPLTEAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCI 122
Query: 137 RKRYSN 142
+ R S
Sbjct: 123 KDRNSR 128
Score = 31.8 bits (72), Expect = 2.2
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 26/116 (22%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIER 152
R RD +R R R + K +E + R +++ R R R+R + R + R
Sbjct: 1 RYRDRERG-RLRNDTRRSDKGRERSRR-----RSRS---RDRSRRRRDRDYYRGRRGRSR 51
Query: 153 ELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQR 208
R + R R R K + E R
Sbjct: 52 SRSPNRY-----------------YRPRGDRSYRRDDRRSGRNTKEPLTEAERDDR 90
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein
Tyrosine Kinases, Apoptosis-associated tyrosine kinases
1 and 3. Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk1 has a similar domain arrangement but
without the transmembrane segment and is thus, a
cytoplasmic (or nonreceptor) kinase. The expression of
Aatyk1 (also referred simply as Aatyk) is upregulated
during growth arrest and apoptosis in myeloid cells.
Aatyk1 has been implicated in neural differentiation,
and is a regulator of the Na-K-2Cl cotransporter, a
membrane protein involved in cell proliferation and
survival, epithelial transport, and blood pressure
control. The function of Aatyk3 is still unknown.
Length = 269
Score = 39.5 bits (92), Expect = 0.006
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLA----RE--YGSPLKHYTPIVVTLWY 532
+ HLH N +H DL N LL+ +K+GD+GL+ +E Y +P + + P+ W
Sbjct: 113 LLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPL---RWI 169
Query: 533 RSPELL------LGCKEYSTPIDMWSVGCIFAEFL 561
+PEL+ L + + ++WS+G E
Sbjct: 170 -APELVDEVHGNLLVVDQTKESNVWSLGVTIWELF 203
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 40.1 bits (94), Expect = 0.007
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 73 KEKERDRNKSDQSDGGHKSH-RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADL 131
+ E + + + +E+ K + + + ++ +E +EI+ L+ + A+L
Sbjct: 185 AKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAEL 244
Query: 132 RARLERKR---------YSNPLREKEKIERELR--KERLLEAERVKEAYKERVKDVEQKR 180
ER S L + E ELR + L E E E +E +++E+
Sbjct: 245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELE 304
Query: 181 KR 182
+
Sbjct: 305 EE 306
Score = 39.4 bits (92), Expect = 0.013
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 74 EKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRA 133
E K + R RK E + RE K + +++ EL+ + + L
Sbjct: 565 EDRLQELKELLEE------LRLLRTRKEELE-ELRERLKELK---KKLKELEERLSQLEE 614
Query: 134 RLERKRYSNPLREKEKIERELR--KERLLEAERVKEAYKERVKDVEQKRKRYRTRSR 188
L+ S E E+ E EL E+L ++E + ++++E+K + R
Sbjct: 615 LLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIR 671
Score = 35.1 bits (81), Expect = 0.22
Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 16/164 (9%)
Query: 53 QHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQK 112
+ + + E + R E+ +S + +E+ E + Q
Sbjct: 592 RERLKELKKKLKELEERLSQLEELL---QSLELSEAENELEEAEEEL--ESELEKLNLQA 646
Query: 113 S-KEYTAREIDELKAKEADLRARL--------ERKRYSNPLREKEKIEREL--RKERLLE 161
+E ++EL+ K +L A + ++ L E E++E EL +E L E
Sbjct: 647 ELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEE 706
Query: 162 AERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEA 205
+ ++ ++++E ++ + + KA ++
Sbjct: 707 LLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELRE 750
Score = 32.0 bits (73), Expect = 1.9
Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 12/146 (8%)
Query: 46 QQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNK--SDQSDGGHKSHRRRDEDRKHRD 103
Q+++ + + + + + E + + +S R +E R+
Sbjct: 222 QEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELER 281
Query: 104 ERKAREAQKSKEYT--AREIDELKAKEADLRARLE-----RKRYSNPLREKEKIERELRK 156
+ E +K + REI+EL+ + LRA LE ++ + EK+E +L K
Sbjct: 282 LLEELE-EKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK 340
Query: 157 ERLLEAERVKEAYKERVKDVEQKRKR 182
E K + + ++R +
Sbjct: 341 LESELEE--LAEEKNELAKLLEERLK 364
Score = 32.0 bits (73), Expect = 2.1
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLE--RKRYSNPLREKEKIERELRK--ERL 159
E++ +A + + I ELK + A+L A LE ++ +E E++EREL + E +
Sbjct: 374 EKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEI 433
Query: 160 LEAERVKEAYKERVKDVEQKRKR 182
+ E + + + +
Sbjct: 434 KKLEEQINQLESKELMIAELAGA 456
Score = 30.5 bits (69), Expect = 6.4
Identities = 19/140 (13%), Positives = 51/140 (36%), Gaps = 10/140 (7%)
Query: 76 ERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARL 135
E + ++ + + E+ + E+ + K E+ +L+ + +L+ L
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKE------ELRQLEDRLQELKELL 575
Query: 136 ERKRYSNPLREKEKIERE---LRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSP 192
E R +E+ + RE K++L E E +E ++ +E + +
Sbjct: 576 EELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLE-LSEAENELEEAEEE 634
Query: 193 INKAKNEMDVDEAHQRGEDD 212
+ ++++ +
Sbjct: 635 LESELEKLNLQAELEELLQA 654
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 39.6 bits (92), Expect = 0.007
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 474 QLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE------YGSPLKHYTPIV 527
Q+ N + L +HRDL N+L+ ++K+ DFGLAR+ Y S + P
Sbjct: 247 QVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLP-- 304
Query: 528 VTLWYRSPELLLGCKEYSTPIDMWSVGCIFAEFLCM 563
L + +PE + Y+T D+WS G + E +
Sbjct: 305 --LKWMAPESIFN-NLYTTLSDVWSFGILLWEIFTL 337
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 39.1 bits (91), Expect = 0.007
Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 35/223 (15%)
Query: 389 IVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEH- 447
+VA+K L+ + K L+E+ L + + PNI+ + + V D + ++ +Y+E+
Sbjct: 48 LVAVKILRPDANKNARN-DFLKEVKILSRLKDPNIIRLLGVCVDE--DPLCMITEYMENG 104
Query: 448 DMKSLMETM----RSKKQVFIPGEVKCLM-----------QQLLNAVAHLHDNWILHRDL 492
D+ + + + + CL Q+ + + +L +HRDL
Sbjct: 105 DLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDL 164
Query: 493 KTSNLLLSHRGILKVGDFGLARE------YGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
T N L+ +K+ DFG++R Y + PI W E +L K ++T
Sbjct: 165 ATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAW----ECILMGK-FTT 219
Query: 547 PIDMWSVGCIFAEFL--CMEPLFTGKSD---LEQLSRIFKTMG 584
D+W+ G E L C E + +D +E F+ G
Sbjct: 220 ASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQG 262
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 39.8 bits (93), Expect = 0.009
Identities = 48/290 (16%), Positives = 99/290 (34%), Gaps = 26/290 (8%)
Query: 63 RDERDRRHHHKEKERDRNKSDQ--SDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTARE 120
+ E R + R + + + S K + +K + E S
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETEN 1233
Query: 121 IDEL---KAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVE 177
+ E+ K + + + E ++ L L A +E VK V
Sbjct: 1234 VAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVP 1293
Query: 178 QKRKRYRTRSRSRSPINKAKNEMDVDEAHQ-----RGEDDGARTP--------PGPAAPE 224
+R R + + + ++ D D A + R + G R P PAA +
Sbjct: 1294 ARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAK 1353
Query: 225 SRSRQDLEAAGL----VVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDG 280
R +++ ++ E+ +P++ + + +GS A + + + +
Sbjct: 1354 KRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGSVLGRAATNKET-ES 1412
Query: 281 SEDSSQDSSSSDEEENDENEDKADKKEKKAKKR---KKEDASPNESERDV 327
SE+ S SSS +E + + + + +K E S ++S+ D
Sbjct: 1413 SENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESADDSDFDD 1462
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 38.0 bits (89), Expect = 0.011
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 440 IVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLL 498
IVM+Y+E +K ++E + L++++ V LH I+H DL TSN++
Sbjct: 74 IVMEYIEGKPLKDVIEEGNDE-----------LLREIGRLVGKLHKAGIVHGDLTTSNII 122
Query: 499 LSHRGILKVGDFGLAR 514
+ + + DFGL +
Sbjct: 123 VRDDKLYLI-DFGLGK 137
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 39.3 bits (91), Expect = 0.012
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 241 DESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENE 300
D + + + QEEG L S G +++S +E S +D SS +E+E +EN+
Sbjct: 729 DAIDDEDAKSEGSQESDQEEG-LDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENK 787
Query: 301 DKADKKEKKAKKRK 314
+ + K+ KK +++
Sbjct: 788 EVSAKRAKKKQRKN 801
Score = 36.2 bits (83), Expect = 0.12
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 251 DEKPGTGQEEGELAGSAESSAGSEESSQDG---SEDSSQDSSSSDEEEND---------E 298
D++P + E A S S +E D S D QD+S S E ++ E
Sbjct: 723 DDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKE 782
Query: 299 NEDKADKKEKKAKKRKKEDA 318
E+ + K+AKK+++++
Sbjct: 783 EEENKEVSAKRAKKKQRKNM 802
Score = 33.5 bits (76), Expect = 0.75
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 273 SEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDAS 319
S++S D +ED DS+S DE + D +D+ K E + ++E
Sbjct: 705 SDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLD 751
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 39.1 bits (91), Expect = 0.012
Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 246 PTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADK 305
P D + G + EG + + ++ ++G D+++ +S++ E+DE+++ +
Sbjct: 241 PDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAE---ASEDSESDESDEDTET 297
Query: 306 KEKKAKKRKKEDASPNESERDVSPHV---IMDQDVDMEIELE 344
EDA P ++ V + ++ D + E
Sbjct: 298 --------PGEDARPATPFTELMEEVDYKVFTREFDEIVLAE 331
Score = 33.7 bits (77), Expect = 0.59
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 255 GTGQEEGELAGSAE--SSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKK 312
++ AE G EE + + D Q ++ D E E + +D+ E+
Sbjct: 207 RVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEE---- 262
Query: 313 RKKEDASPNESERDVSPHVIMDQDVDMEIELEKDTLPPYLPAIQGCRSVEEFKCLNRIEE 372
+ +A+ E E +D E ++DT P + R F L +
Sbjct: 263 -DEAEATDGEGEEGEMDAAEASED-SESDESDEDTETP----GEDARPATPFTELMEEVD 316
Query: 373 GTYGVVYRAKDKRTDEIVALKRLKMEKE 400
Y+ + DEIV + L E E
Sbjct: 317 ------YKVFTREFDEIVLAEELCDEAE 338
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 39.2 bits (91), Expect = 0.012
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 251 DEKPGTGQEEGELAGSAESSAG---SEESSQDGSEDSSQDSSSSDE--EENDENEDKADK 305
+ + + E ++ + S+ESS+D SED S++ SS +E E+ DE E KA
Sbjct: 933 ESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAY 992
Query: 306 KEKKAKKRK 314
+ K+RK
Sbjct: 993 DSRPGKRRK 1001
Score = 31.9 bits (72), Expect = 2.5
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 271 AGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVS 328
GS++ S + E+ S+ +SSD+E +DE ++ + E ED S +ESE D S
Sbjct: 925 VGSDDESDESEEEVSEYEASSDDE-SDETDEDEESDE------SSEDLSEDESENDSS 975
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 38.9 bits (90), Expect = 0.016
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 235 GLVVLTDESRSP---TPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSS 291
G V +RS T + + EEG E +A +ES + + +++S
Sbjct: 66 GAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAAS 125
Query: 292 DEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPH------VIMDQDVDMEIELEK 345
+ E ++ E K ++++ K+ ED SE +VS ++ + + E++LEK
Sbjct: 126 SDVEEEKTEKK--VRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEK 183
Query: 346 D 346
D
Sbjct: 184 D 184
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 37.4 bits (87), Expect = 0.019
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 269 SSAGSEESSQDGSED--SSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERD 326
S+ S++++ D E S ++ EE +E ++ A+ ++K+ K +++ +E E +
Sbjct: 37 PSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENE 96
Query: 327 VSPHVIMDQDVDMEIELEKDT 347
D + + EK
Sbjct: 97 EEDEE--SSDENEKETEEKTE 115
Score = 36.3 bits (84), Expect = 0.047
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 247 TPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKK 306
P E+ + +A EE ++ E ++ S D+E+ + E + ++
Sbjct: 36 FPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAAN----SEDKEDKGDAEKEDEES 91
Query: 307 EKKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIE 342
E++ ++ +E + NE E + + +V+ EI
Sbjct: 92 EEENEEEDEESSDENEKETEEKT----ESNVEKEIT 123
Score = 32.8 bits (75), Expect = 0.58
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Query: 233 AAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSD 292
A L + S E + +E + E ++ + ED +
Sbjct: 31 AYQLFFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEE-EKEAANSEDKEDKGDAEKEDE 89
Query: 293 EEENDENEDKADKKEKKAKKRKKEDASPNESERDVSP 329
E E +ENE++ ++ + +K +E N + +P
Sbjct: 90 ESE-EENEEEDEESSDENEKETEEKTESNVEKEITNP 125
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 37.8 bits (88), Expect = 0.019
Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 29/221 (13%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVRE 428
+ +V ++ +V LK+ + + + + H ++V +
Sbjct: 16 LRVQSDLDIVGPGQE---VSVV----LKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYG 68
Query: 429 IVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKC-LMQQLLNAVAHLHDNWI 487
+ V D+ +V +YV+ L + +K + K + +QL +A+ +L D +
Sbjct: 69 VCVR---DENIMVEEYVKF--GPLDVFLHREKNN-VSLHWKLDVAKQLASALHYLEDKKL 122
Query: 488 LHRDLKTSNLLLSHRGI-------LKVGDFGLAREYGSPLKHYTPIVVTLWYRSPELL-L 539
+H ++ N+L++ G+ +K+ D G+ S + I W +PE +
Sbjct: 123 VHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIP---WI-APECIRN 178
Query: 540 GCKEYSTPIDMWSVGCIFAE--FLCMEPLFTGKSDLEQLSR 578
G + D WS G E EPL T S E+
Sbjct: 179 GQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSS-EKERF 218
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 37.3 bits (87), Expect = 0.022
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 83 DQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTA--REIDELKAKEADLRARLERKRY 140
+ +S + +R R E K + +E A EI K + L L
Sbjct: 58 ENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE--- 114
Query: 141 SNPLREKEKIERELRKERLLEAER----VKEAYKERVKDVEQKRKRYRT 185
EK + E E KERL E+ + +E V ++ ++ + +
Sbjct: 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS 163
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 38.5 bits (90), Expect = 0.022
Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 9/146 (6%)
Query: 97 EDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRK 156
E + + + ++ + +EI+ L K+ +L LE + LR+ E +L+K
Sbjct: 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA--LRDLESRLGDLKK 889
Query: 157 ERL-LEAE--RVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDG 213
ER LEA+ ++ +E +E+KRKR + ++++ E+
Sbjct: 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE--ALEEELSEIEDPKGEDEEIP 947
Query: 214 ARTPPGPAAPESRSR--QDLEAAGLV 237
R +++ A V
Sbjct: 948 EEELSLEDVQAELQRVEEEIRALEPV 973
Score = 37.7 bits (88), Expect = 0.041
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 73 KEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLR 132
EKER+ +++ ++ + ER+ E +K ++ E ELK + DLR
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
Query: 133 ARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRS 191
A LE E +K E R + L + E K + +++++ R + + S
Sbjct: 371 AELE---------EVDKEFAETR-DELKDYREKLEKLKREINELKRELDRLQEELQRLS 419
Score = 37.0 bits (86), Expect = 0.057
Identities = 26/154 (16%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 43 SSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHR 102
SS Q + +++ S+ + R+ EKE ++ + ++ + ++
Sbjct: 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
Query: 103 DERKAREAQKSK-----EYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRK- 156
E + +++ + E ++ +L+ DL ARL R E K+E E+ +
Sbjct: 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRI 810
Query: 157 -------ERLLEAERVKEAYKERVKDVEQKRKRY 183
E+ L +++ Y E+ Q+++
Sbjct: 811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844
Score = 33.1 bits (76), Expect = 0.85
Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 36/166 (21%)
Query: 59 RSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTA 118
SR +R + + R S +S RR E+R ++ +A +
Sbjct: 668 FSRSEPAELQRLRERLEGLKRELSSL-----QSELRRIENRLDELSQELSDASRKIGEIE 722
Query: 119 REIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQ 178
+EI++L+ +E L+ RLE + +E+E+ E K +K++E
Sbjct: 723 KEIEQLEQEEEKLKERLEELE-----EDLSSLEQEI------------ENVKSELKELEA 765
Query: 179 KRKRYRT-------------RSRSRSPINKAKNEMD-VDEAHQRGE 210
+ + S S I + + E+ ++E R E
Sbjct: 766 RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE 811
Score = 33.1 bits (76), Expect = 0.93
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELK--AKEADLRARLERKRYSNPLREKEKI 150
+ E+ + R + K E + R I E + ++A+ R L E E++
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
Query: 151 ERELRKERLLEA---ERVKEAYKE------RVKDVEQKRKRYRTRSRS-RSPINKAKNEM 200
ERE+ +ER E E +E +++V+++ R + R + K K E+
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
Query: 201 DVDEAHQRGED 211
+R D
Sbjct: 402 ---NELKRELD 409
Score = 30.0 bits (68), Expect = 7.7
Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 35/222 (15%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIER--ELRKERLLE 161
+RK +A + E I+ L + R +LER R RE+EK ER L KE E
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLR-----REREKAERYQALLKE-KRE 222
Query: 162 AERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPA 221
E E +K+ E ++ R + + + ++ E + +
Sbjct: 223 YE-----GYELLKEKEALERQKEAIERQLASLEEELEKLTE-EISELEKRLEEI------ 270
Query: 222 APESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEE-GELAGSAESSAGSEESSQDG 280
+L + ++ +E+ +E+ GEL S S +
Sbjct: 271 --------------EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
Query: 281 SEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNE 322
ED+ + + + E + + + + + ++RK+ D E
Sbjct: 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEE 358
Score = 29.7 bits (67), Expect = 9.9
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 8/145 (5%)
Query: 73 KEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKE---A 129
+E E R + ++ D R +D + + E+ RE + K R +EL+ A
Sbjct: 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
Query: 130 DLRARLERKRYSNP--LREKEKIERELRK--ERLLEAERVKEAYKERVKDVEQKRKRY-R 184
DL A + EKE E++K +L + Y++ + D++++ R +
Sbjct: 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
Query: 185 TRSRSRSPINKAKNEMDVDEAHQRG 209
S+ + + +A+ + E RG
Sbjct: 484 ELSKLQRELAEAEAQARASEERVRG 508
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 37.8 bits (88), Expect = 0.025
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 63 RDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTARE-- 120
+ E ++ + ++ + + + +ERK AQ + E +A +
Sbjct: 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLA--QLLEERKKTLAQLNSELSADQKK 225
Query: 121 IDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKR 180
++EL+A E+ L+ + E K R A A + R + ++
Sbjct: 226 LEELRANESRLKNEIAS------------AEAAAAKAREAAAAAEAAAARARAAEAKRTG 273
Query: 181 KRYRTRSRSRSPINKA 196
+ Y+ + + I+
Sbjct: 274 ETYKPTAPEKMLISST 289
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 37.5 bits (87), Expect = 0.036
Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 38/192 (19%)
Query: 148 EKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQ 207
E I L K +E + K K++ K ++K + + +++++E +E+ +
Sbjct: 130 ESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEE-ESESEDESKSEESAE 188
Query: 208 RGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSA 267
DD +S S + G++V + + +E P E +
Sbjct: 189 DDSDDEEEE-------DSDSEDYSQYDGMLVDSSDEEEG----EEAPSINYNEDT--SES 235
Query: 268 ESSAGSEESSQDGSEDSSQDSS------------------------SSDEEENDENEDKA 303
ES E S+ S S++SS S E+E+D++ED
Sbjct: 236 ESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLPSLMGGYFSGSEDEDDDDEDID 295
Query: 304 DKKEKKAKKRKK 315
+ K ++K
Sbjct: 296 PDQVVKKPVKRK 307
>gnl|CDD|234428 TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA.
Members of this protein share two defining regions. One
is a histidine/serine-rich cluster, typically
H-R-S-H-S-S-H-R-S-H-S-S-H. Members are found always in
the context of a pair of radical SAM proteins, HxsB and
HxsC, and a fourth protein HxsD. The system is
predicted to perform peptide modifications, likely in
the His-Xaa-Ser region, to produce some uncharacterized
natural product.
Length = 186
Score = 36.0 bits (83), Expect = 0.043
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 3 DEDTPDSLEIKPPQASTQL----HKSH--HRSHKDKHSSHRTHGSSSSSQQDKSSS 52
D P +E+ P H+SH HRSH HSSH + S S +S
Sbjct: 30 DNLEPTDVELAPLNVDIPNLLAGHRSHSSHRSHSS-HSSHYSGAGGSYSVPSGDTS 84
Score = 30.2 bits (68), Expect = 3.4
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 4 EDTPDSLEIKPPQASTQLHKSH--HRSHKDKHSSHRTHGSSSSSQQDKSSS 52
D P+ L +S + H SH H S S + +S+ S S S
Sbjct: 44 VDIPNLLAGHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPS 94
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 773
Score = 37.1 bits (86), Expect = 0.050
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 81 KSDQSDGGHKSHRRRDEDRKH----------RDERKAREAQKSKEYTAREIDELKAKEAD 130
+S+ +H +EDR+ + +K + KE A+ + K +
Sbjct: 687 ESECMQDNLDTHETVEEDRQAELQACIVRIMKARKKLKHGDLVKEVIAQHKSRFEPKVSM 746
Query: 131 LRARLERKRYSNPLREKEKIERELRKE 157
++ +E L EKE +ER+ E
Sbjct: 747 VKRAIET------LIEKEYLERQADDE 767
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 36.2 bits (84), Expect = 0.052
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 2/107 (1%)
Query: 221 AAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDG 280
A + + ++ + + D++ + + + S A +SS D
Sbjct: 69 AHKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDS 128
Query: 281 SEDSSQDSSSSDEEENDE--NEDKADKKEKKAKKRKKEDASPNESER 325
E+E E + KKE+ +K ++E+ E E+
Sbjct: 129 DSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEK 175
Score = 29.7 bits (67), Expect = 7.7
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 267 AESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDA-SPNESER 325
+ E D S + +S+E + D++E+ K+++ + + DA + S
Sbjct: 68 RAHKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSD 127
Query: 326 DVS 328
S
Sbjct: 128 SDS 130
>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein. Proteins in
this family bind to fibrinogen. Members of this family
includes the fibrinogen receptor, FbsA, which mediates
platelet aggregation.
Length = 393
Score = 36.8 bits (84), Expect = 0.054
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 7/166 (4%)
Query: 46 QQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRD-- 103
Q+D + + R RD +R + + R R+ ++S G R+RD + K +
Sbjct: 67 QRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNV 126
Query: 104 -ERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEA 162
ER+ R+A+ + E + A+ LER++ R + + R++R +E
Sbjct: 127 LERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLE--RRQRDVEN 184
Query: 163 ERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQR 208
+ + R +DVE K + R R N+++ +V E QR
Sbjct: 185 KSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQG--NVLERRQR 228
Score = 35.6 bits (81), Expect = 0.12
Identities = 53/276 (19%), Positives = 109/276 (39%), Gaps = 15/276 (5%)
Query: 40 GSSSSSQQDKSSSQHKSH-HRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDED 98
GSS S D +Q + + R RD +R + + R R+ ++S G R+RD +
Sbjct: 12 GSSPVSAMDSVGNQSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAE 71
Query: 99 RKHRDERKAREAQKSKEYTAREIDELKAKEADLRAR---LERKRYSNPLREKEKIERELR 155
+ + R + ++ + + E + ++ + +++ LER++ + + + R
Sbjct: 72 NRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLE--R 129
Query: 156 KERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGAR 215
++R E + R +D E K + R R N+++ +V E QR ++ ++
Sbjct: 130 RQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQG--NVLERRQRDVENKSQ 187
Query: 216 TPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEE 275
E R R + VL R + G E + +S E
Sbjct: 188 G----NVLERRQRDVENKSQGNVLERRQRD---AENRSQGNVLERRQRDVENKSQGNVLE 240
Query: 276 SSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAK 311
Q E+ SQ + + + EN + + E++ +
Sbjct: 241 RRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQR 276
Score = 35.2 bits (80), Expect = 0.16
Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
Query: 46 QQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDER 105
Q+D + + R RD ++ + + R R+ ++S G R+RD + + +
Sbjct: 211 QRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNV 270
Query: 106 KAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERV 165
R + + + + E + ++A+ ++++ + NPL K I RE + +
Sbjct: 271 LERRQRDVENKSQGNVLERRQRDAENKSQVGQLIGKNPLLSKSIISRENNHSS--QGDSN 328
Query: 166 KEAYKERVKDVEQ--KRKRYRTRSRSRSPINK 195
K+++ ++V V R SR+ S INK
Sbjct: 329 KQSFSKKVSQVTNVANRPMLTNNSRTISVINK 360
Score = 30.6 bits (68), Expect = 4.8
Identities = 25/139 (17%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 46 QQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDER 105
Q+D + + R RD ++ + + R R+ ++S G R+RD + + +
Sbjct: 163 QRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNV 222
Query: 106 KAREAQKSKEYTAREIDELKAKEADLRAR---LERKRYSNPLREKEKIERELRKERLLEA 162
R + + + + E + ++ + +++ LER++ R + + R++R +E
Sbjct: 223 LERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLE--RRQRDVEN 280
Query: 163 ERVKEAYKERVKDVEQKRK 181
+ + R +D E K +
Sbjct: 281 KSQGNVLERRQRDAENKSQ 299
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 36.4 bits (85), Expect = 0.061
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIER 152
R+ +R+ R E K RE + + DE + + LRA L ++ Y R+KEK E
Sbjct: 167 EEREAERRERKEEKEREVARLRAQQEEAEDEREELDE-LRADLYQEEYERKERQKEKEEA 225
Query: 153 ELRKERLLEAERVKE---AYKERVKDVEQKRKRYR 184
E R+ + E +R +E KE E+ +
Sbjct: 226 EKRRRQKQELQRAREEQIEEKEERLQEERAEEEAE 260
Score = 36.0 bits (84), Expect = 0.091
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 61 RHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTARE 120
+++E +R+ KEKE + Q + R R+E + ++ER E + + R
Sbjct: 208 LYQEEYERKERQKEKEEAEKRRRQKQ---ELQRAREEQIEEKEERLQEERAEEEAERERM 264
Query: 121 IDELKAKEADLRARLERKR-----YSNPLR----EKEKIERELRKERLLEAERVKEAYKE 171
+++ E + E++R + L EKE+ R+E L E ER++E E
Sbjct: 265 LEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAE 324
Query: 172 RVKDVEQKRKR 182
R +E++R+R
Sbjct: 325 RQARIEEERQR 335
Score = 32.6 bits (75), Expect = 1.1
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 95 RDEDRKHRDERKAREAQKSKEYTAR-EIDELKA----KEADLRARLERKRYSNPLR---- 145
RD + + KA E ++ + E + LKA +E + + + ER+ L+
Sbjct: 22 RDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIE 81
Query: 146 EKEKIERELRKERLLEAERVKEAYKE-RVKDVEQKRKRYRTRSRSRSPINKAKNE 199
E+EK +E +ERL E E++ E + + +D + +++ + + R I++ E
Sbjct: 82 EREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEE 136
Score = 31.8 bits (73), Expect = 1.8
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 93 RRRDEDRKHRDERKAREAQKSKE--YTAREIDELKAKEADLRARLERKRYSNPLREKEKI 150
R ++ED E++ ++ + +E E E K +E R R E + REK +
Sbjct: 107 RIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEK-EREREEELKILEYQREKAER 165
Query: 151 ERELRKERLLEAERVKEAYKERVKDVEQKRKRYR 184
E E ER E + KE R++ +++ + R
Sbjct: 166 EEEREAER-RERKEEKEREVARLRAQQEEAEDER 198
Score = 31.8 bits (73), Expect = 1.9
Identities = 29/136 (21%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 53 QHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDER----KAR 108
+ K ++ ++E R E+ER + +++ + + +R++E R+ R + R
Sbjct: 27 EEKKRIKAEEKEEERRIDEMMEEERLKALAEEEE---RERKRKEERREGRAVLQEQIEER 83
Query: 109 EAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEA 168
E ++ +EY R + + E R + E E E E+ ++++L E + E
Sbjct: 84 EKRRQEEYEERLQEREQMDEIIERIQEE--------DEAEAQEKREKQKKLREE--IDEF 133
Query: 169 YKERVKDVEQKRKRYR 184
+ER++ E++++R R
Sbjct: 134 NEERIERKEEEKERER 149
Score = 31.8 bits (73), Expect = 1.9
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 20/137 (14%)
Query: 65 ERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDED----RKHRDERKAREAQKSKEYTARE 120
ER R KE+E R ++ Q + R + D +++E + +E QK KE +
Sbjct: 172 ERRERKEEKEREVARLRAQQEE---AEDEREELDELRADLYQEEYERKERQKEKEEAEKR 228
Query: 121 ID-------------ELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKE 167
E K + E L ++ + E ++ + E
Sbjct: 229 RRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Query: 168 AYKERVKDVEQKRKRYR 184
+E + +E+K +R
Sbjct: 289 HRRELEQQIEEKEERRA 305
Score = 31.0 bits (71), Expect = 2.8
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 120 EIDELKAKEADLRARLERKRYSNPLREKEKI-----ERELRKERLLEAERVKEAYKERVK 174
+EL+ LRA K + EK++I E E R + ++E ER+K +E +
Sbjct: 2 NSEELRELNEKLRAAKVNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEER 61
Query: 175 DVEQKRKRYRTR 186
+ ++K +R R
Sbjct: 62 ERKRKEERREGR 73
Score = 30.6 bits (70), Expect = 3.7
Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 95 RDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKR--YSNPLREKEKIER 152
R++ R+ E + +E ++ E R +E +A+ + R + ++ R E+ + +
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 153 ELRKERLLEAERVKEAYK---ERVKDVEQKRKR 182
E ++ E ++ E + ER ++ E +R+
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRE 175
>gnl|CDD|221415 pfam12083, DUF3560, Domain of unknown function (DUF3560). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 120
amino acids in length. This domain has a conserved GHHSE
sequence motif.
Length = 127
Score = 34.6 bits (80), Expect = 0.066
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 88 GHKSHR--RRDEDRKHRDERKAREAQ-KSKEYTAR----------------EIDELKAKE 128
GH S R RRD +R H KA EAQ K++ + R + LK
Sbjct: 48 GHHSERRHRRDIERIHNTMGKAVEAQDKAEYWEQRAAAAARGAIARDDPDAVLRRLKKLL 107
Query: 129 ADLRARLERKRYSNPLREK 147
ADLRA R + +N
Sbjct: 108 ADLRASQRRMKAANKRLRT 126
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 36.2 bits (84), Expect = 0.069
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 23/111 (20%)
Query: 90 KSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKR---------- 139
K R++ ++ R+ER E+ ELK K ++ A+L+ R
Sbjct: 49 KVRELREKAQELREERDE---------INEEVQELKEKRDEINAKLQELRKEYRELKEKR 99
Query: 140 --YSNPLREKEKIERELRKERLLEAERV--KEAYKERVKDVEQKRKRYRTR 186
++ R + +ERE+ + + V E +E V+ +++ RK
Sbjct: 100 NEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDA 150
Score = 30.4 bits (69), Expect = 5.1
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 97 EDRKHRDERKAREAQKSKEYTAR-EIDELKAKEADLRARLERKRYSNPLREKEKIERELR 155
+ K + ++ E K K R E EL K +L A++ LREK + RE R
Sbjct: 11 LELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRE------LREKAQELREER 64
Query: 156 KERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMD 201
E E + +KE E +++ RK YR R+ N +
Sbjct: 65 DEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIK 110
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 36.2 bits (83), Expect = 0.070
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 269 SSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDV 327
S S E+S+ E+SS+ S DE+E+++ + + K + K RK E ER+
Sbjct: 236 GSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQEREN 294
Score = 33.1 bits (75), Expect = 0.71
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 258 QEEGELAGSAESSAGSEESSQDG----SEDSSQDSSSSDEEENDENEDKADKKEK---KA 310
+ + EL + S + +D D S ++S S+EEE+ E+E D+ E K
Sbjct: 209 ESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKI 268
Query: 311 KKRKKEDASPNESERDVSPHVIMDQDVDMEIE 342
+KRK +DA + PH+ ++ + + E E
Sbjct: 269 RKRKTDDAKKSR-----KPHIHIEYEQERENE 295
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 34.5 bits (80), Expect = 0.079
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERE 153
+ +E ++ R E+KA E +K ++ EI ELKA+ +L+A +E+ +EK+E
Sbjct: 56 KENEAKRRRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKL--------EEKLEEY 107
Query: 154 LRKERLLEAERVKEAYKE 171
E L E V E E
Sbjct: 108 QPYEEFL--ESVVERSPE 123
Score = 29.9 bits (68), Expect = 2.5
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLER----------KRYSNPLREKEKIERE 153
+ K E ++ +E + +EL+ KE +L+ L + KR +K + E++
Sbjct: 17 DAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR--RRAEKKAEEEKK 74
Query: 154 LRKERLLEAERVK---EAYKERVKDVEQKRKRYR 184
LRKE+ E + +K E K ++ +E+K + Y+
Sbjct: 75 LRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQ 108
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 35.1 bits (80), Expect = 0.084
Identities = 32/127 (25%), Positives = 68/127 (53%), Gaps = 14/127 (11%)
Query: 60 SRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAR 119
+R + E++ + +++E+DR + ++ RR E+R R+E EA++ +E AR
Sbjct: 35 AREQREQEEQERREQEEQDRLEREE------LKRRAAEERLRREE----EARRQEEERAR 84
Query: 120 EIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQK 179
E +E ++A+ + E++ ++KE+ E R+ EAER++ ++ + +EQ+
Sbjct: 85 EKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARARE----EAERMRLEREKHFQQIEQE 140
Query: 180 RKRYRTR 186
R + R
Sbjct: 141 RLERKKR 147
Score = 30.1 bits (67), Expect = 3.5
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 46 QQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDER 105
+Q + Q + + R ER+ +ER R + + + R ++E K + E
Sbjct: 37 EQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEE 96
Query: 106 KAREAQKSKEYTAR--EIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAE 163
+ ++ Q+ +E + E E +A+E R RLER+++ E+E++ER+ R E +++
Sbjct: 97 EEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQ-IEQERLERKKRLEEIMKRT 155
Query: 164 RVKEA 168
R E
Sbjct: 156 RKSEV 160
Score = 29.3 bits (65), Expect = 7.4
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 133 ARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSP 192
AR +R++ RE+E+ +R R+E A + +E + E++R R + R
Sbjct: 35 AREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKA 94
Query: 193 INKAKNEMDVDEAHQR 208
+ K E + E Q+
Sbjct: 95 EEEEKQEQEEQERIQK 110
Score = 29.3 bits (65), Expect = 8.0
Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLE---RKRYSNPLREKEK 149
RR+ +++ ++E++ RE + E E +ELK + A+ R R E R++ REKE+
Sbjct: 32 RRQAREQREQEEQERREQE---EQDRLEREELKRRAAEERLRREEEARRQEEERAREKEE 88
Query: 150 IERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRG 209
+ +E + + +E +++ ++ E + + R R + + E + E +R
Sbjct: 89 KAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRL 148
Query: 210 EDDGARTPPGPAAPESRS 227
E+ RT +P+ +
Sbjct: 149 EEIMKRTRKSEVSPQVKK 166
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 36.5 bits (85), Expect = 0.088
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 21/110 (19%)
Query: 89 HKSHRRRDEDR--KHRDE----RKAREAQKSK-EYTAREIDELKAKEADL-------RAR 134
H + RR + + R E R+ A++ + ARE+ EL E+DL
Sbjct: 277 HANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH 336
Query: 135 LERKRYSNPLREKEKIER---ELRK--ERLLEAERVKEAYKERVKDVEQK 179
L + LR++EKIER +L + ERL E V E E+ ++ E +
Sbjct: 337 LNLVQ--TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEAR 384
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 35.1 bits (81), Expect = 0.091
Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 90 KSHRRRDEDRKHRDERKAR--EAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREK 147
+ + +E + E ++ E+++L+ + A+L + LE + +
Sbjct: 62 LKAPVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLK---EDLQL 118
Query: 148 EKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSR 190
+ + +ERL E + + ++++ Q + R
Sbjct: 119 LRELLKSLEERLESLEESIKELAKELRELRQDLREEVEELREE 161
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 33.6 bits (77), Expect = 0.092
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 30 KDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGH 89
+ K G S ++ + S+ + R R R RDR R R++ D+ +
Sbjct: 26 RRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRA-----RYRDRDDRDRDRY 80
Query: 90 KSHRRRDEDRKHRDERK 106
R R R R+
Sbjct: 81 DRSRSRSRSRSRDRRRR 97
Score = 31.3 bits (71), Expect = 0.58
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 48 DKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGG-HKSHRRRDEDRKHRDERK 106
K+ RS R R R K + R + D ++ RD DR R +
Sbjct: 27 RKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDRYDRSRSR 86
Query: 107 ARE 109
+R
Sbjct: 87 SRS 89
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 34.6 bits (80), Expect = 0.098
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 105 RKAREAQKSK-EYTAREIDELKAKEADL---RARLERKRYSNPLREKEKIERELRKERLL 160
+K E KSK E EI + +EADL RA+LE +R EKEK E E++ + +
Sbjct: 74 KKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQR------EKEKAEYEIKNQAVD 127
Query: 161 EAERVKEAYKERVKDVEQKRK 181
A + E D + R+
Sbjct: 128 LAVLLSSKALEESIDESEHRR 148
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 35.7 bits (82), Expect = 0.11
Identities = 41/234 (17%), Positives = 88/234 (37%), Gaps = 42/234 (17%)
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERE 153
++ +K +RK +E Q +ELK K+A +++ ++
Sbjct: 70 QQSSAKKGEQQRKKKEEQ--------VAEELKPKQAA----------------EQERLKQ 105
Query: 154 LRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDG 213
L KERL E+ K+A +E K + ++K+ ++R + K K E +A
Sbjct: 106 LEKERLKAQEQQKQA-EEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKA-------- 156
Query: 214 ARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGS 273
AA ++ + EA ++ + E ++ A +A A +
Sbjct: 157 -------AAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKA 209
Query: 274 EESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDV 327
E ++ +E ++ +++E+ E + A K + + A + +
Sbjct: 210 EAEAKAKAEKKAEA--AAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAAL 261
Score = 31.1 bits (70), Expect = 3.4
Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 35 SHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDR-RHHHKEKERDRNKSDQSDGGHKSHR 93
S ++ Q+ K Q + + E++R + KE+ + + + Q++ K +
Sbjct: 69 SQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQ 128
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERE 153
+ ++ + + A E +K E KAK A A+L+ + E+ E
Sbjct: 129 LEQKQQEEQARKAAAEQKKKAE-------AAKAKAAAEAAKLKAAAEAKKKAEEAAKAAE 181
Query: 154 LRKERLLEAERVKEAYKERVKDVEQKRK 181
K + A K+A E E+ +
Sbjct: 182 EAKAKAEAAAAKKKAEAEAKAAAEKAKA 209
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 35.4 bits (81), Expect = 0.11
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 363 EFKCLNRIEEGTYGVVYR---AKDKRTDEI-VALKRLKMEKEKEGFPITSLREINTLLKA 418
E K + + G +G VY+ D +I VA+K L+ E L E +
Sbjct: 8 ELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLR-ENTSPKANKEILDEAYVMAGV 66
Query: 419 QHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNA 478
P + + I + S + + +M Y L++ +R K ++ Q+
Sbjct: 67 GSPYVCRLLGICLTSTVQLVTQLMPY-----GCLLDYVRENKDRIGSQDLLNWCVQIAKG 121
Query: 479 VAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR 514
+++L + ++HRDL N+L+ +K+ DFGLAR
Sbjct: 122 MSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLAR 157
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 35.4 bits (82), Expect = 0.12
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 251 DEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQ-----DSSSSDEEENDENEDKADK 305
+E+ E+G + + E +D D +S E + E+E++ D+
Sbjct: 81 EERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDE 140
Query: 306 KEKKAKKRKKEDASPNESERDV 327
KKAK+ E+ S + E
Sbjct: 141 AAKKAKEDSDEELSEEDEEEAA 162
Score = 30.0 bits (68), Expect = 7.3
Identities = 19/66 (28%), Positives = 26/66 (39%)
Query: 259 EEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDA 318
EE E S E S+ + S S DEEE DE KA + + + E+
Sbjct: 101 EEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEE 160
Query: 319 SPNESE 324
+ E E
Sbjct: 161 AAEEEE 166
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 35.0 bits (81), Expect = 0.12
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 273 SEESSQDGSEDSSQDSSSSDEEENDENED--KADKKEKKAKKRKK 315
EE ++ DS D S DE E+D+ E+ K ++E++ KK+K+
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKR 89
Score = 34.3 bits (79), Expect = 0.26
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 76 ERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARL 135
E D +SD + G K +R + +K + R +A K ++ D AK A
Sbjct: 62 EDDEPESDDEEEGEKELQREERLKKKK--RVKTKAYKEPTKKKKKKDPTAAKSPKAAAPR 119
Query: 136 ERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRS 191
+K+ ++ RK + KEA ER+K+ E +RK+ + ++R R
Sbjct: 120 PKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRK 175
Score = 33.5 bits (77), Expect = 0.44
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 259 EEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKK 315
++ E E +S D + + S DEEE ++ + ++ +KK + + K
Sbjct: 39 DDEEFEIEEEEEEEEVDS--DFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTK 93
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 35.4 bits (81), Expect = 0.12
Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 25/211 (11%)
Query: 363 EFKCLNRIEEGTYGVVYRA---KDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQ 419
E K + + G +G VY+ + T +I ++ E + + E +
Sbjct: 8 ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMD 67
Query: 420 HPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAV 479
HP++V + + + + + +M + L++ + K + Q+ +
Sbjct: 68 HPHLVRLLGVCLSPTIQLVTQLMPH-----GCLLDYVHEHKDNIGSQLLLNWCVQIAKGM 122
Query: 480 AHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYT------PIVVTLWYR 533
+L + ++HRDL N+L+ +K+ DFGLAR K Y PI W
Sbjct: 123 MYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIK---W-- 177
Query: 534 SPELLLGC---KEYSTPIDMWSVGCIFAEFL 561
+ L C ++++ D+WS G E +
Sbjct: 178 ---MALECIHYRKFTHQSDVWSYGVTIWELM 205
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 35.7 bits (82), Expect = 0.12
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 8/158 (5%)
Query: 177 EQKRKRYRTRSRSRSPINKAKN-EMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAG 235
+ K R + + + E D DE+ + GED +++++ L+
Sbjct: 200 TEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDK 259
Query: 236 LVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGS-------EDSSQDS 288
+ + D+ G+EE ++ S+ S EE S E +
Sbjct: 260 KGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDED 319
Query: 289 SSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERD 326
S EEE +E E KK KK KK K + ++ + D
Sbjct: 320 SEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD 357
Score = 33.4 bits (76), Expect = 0.78
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 251 DEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENED-KADKKEKK 309
G EE E S E A E + SE+S ++ + EEE ++ K KK K
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKN---EEEGGLSKKGKKLKKLKG 346
Query: 310 AKKRKKEDASPNESERDVS 328
K +D S + + D S
Sbjct: 347 KKNGLDKDDSDSGDDSDDS 365
Score = 31.5 bits (71), Expect = 2.8
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 266 SAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESER 325
G + +D D D SD+ D +E+K+ KK+KK K KK+ + +R
Sbjct: 204 KGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Query: 326 DV 327
Sbjct: 264 GG 265
Score = 31.5 bits (71), Expect = 3.0
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 220 PAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQD 279
+PE ++ ++E D S + +E+ G ++ +L G ++ D
Sbjct: 303 KLSPEIPAKPEIEQDE-----DSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD 357
Query: 280 GSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNES 323
S DS SD + D KK+K+ KK + D++P+
Sbjct: 358 ----SGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSP 397
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 36.1 bits (83), Expect = 0.12
Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 28/153 (18%)
Query: 199 EMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQ 258
++ +DE D D+EAA DE++ ++P +
Sbjct: 3992 DLKLDEKEGDVSKD-----------SDLEDMDMEAA------DENKEEADAEKDEPMQDE 4034
Query: 259 EEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDE---EENDENEDKADKKEKKAKKRKK 315
+ E E++ E+ QD D ++D +E EEN + +++ + K+ + +
Sbjct: 4035 DPLE-----ENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELE 4089
Query: 316 EDASPNESERDVSPHVIMD-QDVDMEIELEKDT 347
+ P + D P MD + E +++
Sbjct: 4090 QGEVPEDQAIDNHPK--MDAKSTFASAEADEEN 4120
Score = 35.0 bits (80), Expect = 0.28
Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYS-NPLREKEKIERELRKERLLEA 162
E A E + + E E + E+D+ + S N + E+ ++L +E
Sbjct: 3838 EELANEEDTANQSDLDE-SEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIP 3896
Query: 163 ERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAA 222
E + + E++ D + T +S + A NE D+ EDD A
Sbjct: 3897 EDLSNSLNEKLWDEPNEEDLLETEQKSNEQ-SAANNESDLVSK----EDD-------NKA 3944
Query: 223 PESRSRQDLEAAGLVVLTDESRSPTPQRDE-KPGTGQEEGELAGSAESSAGSEESSQDGS 281
E + RQ+ E +E DE +P + + E E+ D
Sbjct: 3945 LEDKDRQEKEDE------EEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEK 3998
Query: 282 E-DSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDVDME 340
E D S+DS D + +E+K + +K + + ED P E + + D D+
Sbjct: 3999 EGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDED--PLEENNTLDEDIQQDDFSDLA 4056
Query: 341 IELEK 345
+ EK
Sbjct: 4057 EDDEK 4061
Score = 33.0 bits (75), Expect = 1.0
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 20/134 (14%)
Query: 258 QEEGELAGSAES----SAGSEESSQDGSEDSSQDSSSSDEEENDENEDK--ADKKEKKAK 311
+E+ + G+AE S +ES+ + S +S++ E+E DE DK D ++
Sbjct: 4212 EEDLQALGNAEKDQIKSIDRDESANQNPD--SMNSTNIAEDEADEVGDKQLQDGQDISDI 4269
Query: 312 KRKKEDASPNESERDVSPHVIMDQDVDMEIELE----KDTLPPYLPAIQGCRSVEEFKCL 367
K+ ED P E ++Q + E +D LP Y I ++E + L
Sbjct: 4270 KQTGEDTLPTE-------FGSINQSEKVFELSEDEDIEDELPDYNVKITPAMPIDEARDL 4322
Query: 368 -NRIEEGTYGVVYR 380
N+ E+ T +
Sbjct: 4323 WNKHEDSTKQLSIE 4336
Score = 32.7 bits (74), Expect = 1.4
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 245 SPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDS--SQDSSSSD-EEENDENED 301
SP +++ E G GS G+E+ + +ED + ++ D ++D +E
Sbjct: 3799 SPDLPQEKSNSGELESGTGLGSGV---GAEDITNTLNEDDDLEELANEEDTANQSDLDES 3855
Query: 302 KADKKEKK-AKKRKKEDASPNESERDVSPHVIMDQDVD 338
+A + E K S NE+ + +D++V+
Sbjct: 3856 EARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVN 3893
Score = 31.9 bits (72), Expect = 2.2
Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 64/265 (24%)
Query: 67 DRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREI---DE 123
D + E ++ ++QS ++S ED E K R+ ++ +E + ++ DE
Sbjct: 3909 DEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968
Query: 124 LKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRY 183
++ + S P E E ++ L E ++ E + KD + +
Sbjct: 3969 IQPDIQE--------NNSQPPPENEDLD-------LPEDLKLDEKEGDVSKDSDLE---- 4009
Query: 184 RTRSRSRSPINKAKNEMDVDEAHQRGED-DGARTPPGPAAPESRSRQDLEAAGLVVLTDE 242
+MD++ A + E+ D + P L DE
Sbjct: 4010 ---------------DMDMEAADENKEEADAEKDEPMQDEDPLEENNTL---------DE 4045
Query: 243 SRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEE-----ND 297
Q+D+ +++ + + G EE+ Q+ E + S +E E D
Sbjct: 4046 DI----QQDDFSDLAEDDEK-----MNEDGFEENVQENEESTEDGVKSDEELEQGEVPED 4096
Query: 298 E---NEDKADKKEKKAKKRKKEDAS 319
+ N K D K A E+ +
Sbjct: 4097 QAIDNHPKMDAKSTFASAEADEENT 4121
Score = 31.9 bits (72), Expect = 2.8
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 32/134 (23%)
Query: 249 QRDEKPGTGQE-EGELAGSAESSAGSEESSQD---------------------------- 279
Q D +E E ++ G + S SE + D
Sbjct: 3849 QSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLW 3908
Query: 280 ---GSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQD 336
ED + S+E+ NE KE K + +D E E ++S V +D +
Sbjct: 3909 DEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968
Query: 337 VDMEIELEKDTLPP 350
+ +I+ PP
Sbjct: 3969 IQPDIQENNSQPPP 3982
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 35.7 bits (82), Expect = 0.12
Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 4/162 (2%)
Query: 59 RSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTA 118
+ R E +R ++E D+ + D K+ +D K RDE R+ Q+ +
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDE--VRQKQQEAKNLP 261
Query: 119 REIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQ 178
+ D KE A +++ E +K + E K + +A +K+ K K+ E
Sbjct: 262 KPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAED 321
Query: 179 KRKRYRT-RSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPG 219
K + R + K K +++ ED + P
Sbjct: 322 KELEAQKKREPVAEDLQKTKPQVEAQPTSL-NEDAIDSSNPV 362
Score = 33.8 bits (77), Expect = 0.44
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 45 SQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDG----------GHKSHRR 94
+QQ K K + + + D + +K+RD + Q + K ++
Sbjct: 215 AQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQ 274
Query: 95 RDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIEREL 154
E++K E+ E +K+ E A + + KA + ++ K E E E
Sbjct: 275 VAENQKREIEKAQIEIKKNDE-EALKAKDHKAFDLKQESKASEKE-------AEDKELEA 326
Query: 155 RKERLLEAE 163
+K+R AE
Sbjct: 327 QKKREPVAE 335
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive force
interconversion].
Length = 147
Score = 34.3 bits (79), Expect = 0.12
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAE 163
ER +EA +++ + E K + ++ ++ +I E + E E E
Sbjct: 39 ERAKKEAALAQKKAQVILKEAKDEAQEIIENANKR--------GSEILEEAKAEAREERE 90
Query: 164 RVKE-AYKERVKDVEQKRKRYR 184
++K A E + EQ R+ R
Sbjct: 91 KIKAQARAEIEAEKEQAREELR 112
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 35.6 bits (82), Expect = 0.13
Identities = 32/195 (16%), Positives = 79/195 (40%), Gaps = 27/195 (13%)
Query: 134 RLERKRYSNPLREK------EKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRS 187
R ++++ S E+ ++ EL++++ E ER+K+ KER+ EQK++
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 188 RSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPT 247
++ ++ E+ A+ AA ++++ + EA ++ +
Sbjct: 126 QAA-------------LKQKQAEEAAAK-----AAAAAKAKAEAEAKRAAAAAKKAAAEA 167
Query: 248 PQRDEKPGTGQEEGELAGSAESSAGS---EESSQDGSEDSSQDSSSSDEEENDENEDKAD 304
++ E + E AE+ A + E+ + ++ + +++ +++ A
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA 227
Query: 305 KKEKKAKKRKKEDAS 319
K K E A+
Sbjct: 228 AKAAAEAKAAAEKAA 242
Score = 31.3 bits (71), Expect = 3.0
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 95 RDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIE--- 151
R + ++ +R + +K ++ A E+ + +A E + +LE++R + ++K+ E
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 152 RELRKERLLEAERVKEAYKERVK-DVEQKR 180
+ K++ E K A + K + E KR
Sbjct: 126 QAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 35.1 bits (81), Expect = 0.13
Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 32 KHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKE--------KERDRNKSD 83
K S ++ S S +SS S SR E +E K+ R K
Sbjct: 45 KDSESSSNSVPSLSLSSTASSLSDSSTYSRSLKEVKLERQAQEAYENWLSAKQAQRQKKL 104
Query: 84 QSDGGHKSHRRRDEDRKHRDE-----------------RKAREAQKSKEYTAREIDELKA 126
Q +++ E K R+E +KA++A K + ++ A
Sbjct: 105 QK---LLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESA 161
Query: 127 KEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKR 182
+ + + S +K E EL+K + + +R +E K+R K E++ ++
Sbjct: 162 SSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERK 217
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 35.7 bits (83), Expect = 0.14
Identities = 49/276 (17%), Positives = 92/276 (33%), Gaps = 49/276 (17%)
Query: 73 KEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERK--AREA----------QKSKEYTARE 120
+ E+++ K++++ + R E R+ R ER+ AREA K K+ A
Sbjct: 439 RAIEQEKKKAEEA-------KARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAA 491
Query: 121 IDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKR 180
+ +KAK+A + K + P RE RK + + K+A +
Sbjct: 492 LARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQA-----AAAADPK 546
Query: 181 KRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLT 240
K + +R+ KA + EA + + A A +++ A+
Sbjct: 547 KAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAAS------ 600
Query: 241 DESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSED----------------- 283
E + D K A A+ + + + D
Sbjct: 601 AEPEEQVAEVDPKKAAVAAAIARA-KAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARK 659
Query: 284 -SSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDA 318
+ Q +++ EE D + +AK +K
Sbjct: 660 AAQQQANAEPEEAEDPKKAAVAAAIARAKAKKAAQQ 695
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 35.3 bits (81), Expect = 0.15
Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 24/161 (14%)
Query: 372 EGTYGVVYRAKDKRTD---EIVALKRLKME----KEKEGFPITSLREINTLLKAQHPNI- 423
+G +G V A+ K D + VA+K LK + + E F LRE + + HPN+
Sbjct: 9 KGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEF----LREAACMKEFDHPNVI 64
Query: 424 ----VTVREIVVGSNMDKIFIVMDYVEH-DMKSLMETMRSKKQVF-IPGEVKCLMQQLLN 477
V++R G + +++ +++H D+ + + R ++ F +P ++ L++ +++
Sbjct: 65 KLIGVSLRSRAKG-RLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLP--LQTLVRFMID 121
Query: 478 ---AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLARE 515
+ +L +HRDL N +L+ + V DFGL+++
Sbjct: 122 IASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKK 162
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 35.5 bits (83), Expect = 0.16
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 62 HRDERDRRHHHKEKE-RDRNKSDQSDGGHKSHRRRDEDRKHRDE----RKAREAQKSKEY 116
++ R+RR+ ++ E R K + D R+ E + R+E ++ QK +E
Sbjct: 74 EKELRERRNELQKLEKRLLQKEENLD-------RKLELLEKREEELEKKEKELEQKQQEL 126
Query: 117 TAREIDELKAKEADLRARLERKRYSNPLREK------EKIERELRKERLLEAERVKEAYK 170
+E +EL+ + LE R S E+ EK+E E R E A +KE +
Sbjct: 127 EKKE-EELEELIEEQLQELE--RISGLTAEEAKEILLEKVEEEARHEA---AVLIKE-IE 179
Query: 171 ERVKDVEQKRKRY 183
E K+ K+ +
Sbjct: 180 EEAKEEADKKAKE 192
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 34.8 bits (80), Expect = 0.17
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 63 RDE-RDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREI 121
R+E ++++ +R K++ D +S + + E K K +A+KS E RE
Sbjct: 84 REEAEKLEEFREKQKEERKKTE--DIMKRSQKNKKELYK-----KTMKAKKSYEQKCREK 136
Query: 122 DELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRK 181
D+ A++A E+ +E EK++++ + + AE AYK + +E R
Sbjct: 137 DK--AEQA-----YEKSSSGAQPKEAEKLKKKAAQCKT-SAEEADSAYKSSIGCLEDARV 188
Query: 182 RYRT 185
+ +
Sbjct: 189 EWES 192
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 35.4 bits (81), Expect = 0.17
Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 25/236 (10%)
Query: 59 RSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKA------REAQK 112
E R ++ + + +K+ + + + + REAQ
Sbjct: 414 EVLSTQEERRDILKNLLADAEKRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQS 473
Query: 113 SKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKER-------LLEAERV 165
+ A E + + A +++ ++ KEK + LL+ E
Sbjct: 474 RGKTAAAERSQEQMTAALKALLAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKEEAK 533
Query: 166 KEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNE-MDVDEAHQRGEDDGARTPPGPAAPE 224
+ +E+ +E K++ S+ +++ + +A ++ G+
Sbjct: 534 QRQLQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLY------- 586
Query: 225 SRSRQDLEAAGLVVLTDE----SRSPTPQRDEKPGTGQEEGELAGSAESSAGSEES 276
+ AA L + S Q D K G SA A
Sbjct: 587 REALAQNAAALNKALNELAAYWSALDLLQGDWKAGALSALANYRDSATDVASQAAQ 642
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 35.3 bits (81), Expect = 0.18
Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 60 SRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAR 119
S+ + + + D NK + K + ++ + E+ E + +E
Sbjct: 294 SQKIKTLREKW--RALKSDSNKYENYVNAMKQ---KSQEWPGKLEKLKSEIELKEE---- 344
Query: 120 EIDELKAKEADLRARLERKRYSNP-----LREKEKIERELRKERLLEAERVKEAY----- 169
EI L++ +L +L ++ S +E+EK+ REL K + + K
Sbjct: 345 EIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE 404
Query: 170 -KERVKDVEQKRKRYRTR----SRSRSPINKAKNE 199
+ K +E+ ++Y + +RSRS I N+
Sbjct: 405 AQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVND 439
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 35.2 bits (82), Expect = 0.19
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 478 AVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAR 514
VA LH I+H DL TSN ++ L + DFGL +
Sbjct: 440 IVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGK 475
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 34.1 bits (79), Expect = 0.19
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 28/116 (24%)
Query: 121 IDELKAKEADLRARLER------------KRYSNPLREKEKIERELRKERLLEAERVKEA 168
I LK + A+++ E KR PL++ E+ ELRK+ L + E+ K++
Sbjct: 29 IKSLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKK-LKDYEKDKQS 87
Query: 169 Y---KERVKDVEQKRK-----------RYRTRSRSRSPINKAKNEMDVDEAHQRGE 210
K R+K++E++ K R+ R R + K E + + Q+
Sbjct: 88 LKNLKARLKELEKELKNLKWESEVLEQRFEKVERERDEL-YDKFEAAIQDVQQKTG 142
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 35.1 bits (81), Expect = 0.19
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 99 RKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKER 158
ER +EAQK E E L+AKE LR R ++++ + RE+E+++RE ER
Sbjct: 31 LAKEAERILQEAQKEAE-EKLEAALLEAKELLLRERNQQRQEAR--REREELQREE--ER 85
Query: 159 LLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMD 201
L++ E +A R + ++ + R ++ S E++
Sbjct: 86 LVQKEEQLDA---RAEKLDNLENQLEEREKALSARELELEELE 125
Score = 32.0 bits (73), Expect = 2.1
Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 16/143 (11%)
Query: 52 SQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRK---HRDERKAR 108
Q + R E + K + + R+ + R+E +
Sbjct: 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLV 87
Query: 109 EAQKSKEYTAREIDELK----AKEADLRARL-----ERKRYSNPLREKEKIERELRKE-- 157
+ ++ + A ++D L+ +E L AR K+ N L + E ++
Sbjct: 88 QKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLL 147
Query: 158 -RLLEAERVKEAYKERVKDVEQK 179
+LL+AE +E +RVK +E++
Sbjct: 148 LKLLDAELEEEK-AQRVKKIEEE 169
Score = 30.8 bits (70), Expect = 4.3
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 90 KSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLR---- 145
++ R E +K +E+ ++KE RE ++ + AR ER+
Sbjct: 34 EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQR-----QEARREREELQREEERLVQ 88
Query: 146 -----EKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTR 186
+ + + + +L E E +A R ++E+ K+
Sbjct: 89 KEEQLDARAEKLDNLENQLEERE---KALSARELELEELEKQLDNE 131
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 34.8 bits (80), Expect = 0.21
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 28/194 (14%)
Query: 93 RRRDEDRKHRDERKAREAQ---KSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEK 149
R+++ +++ E+ A++A+ K E ++ +E KAK+A E K + EK+
Sbjct: 90 RQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA-----EAKAKAEAEAEKKA 144
Query: 150 IERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMD----VDEA 205
E E +K+ E E +A E K + +K+ KAK E +EA
Sbjct: 145 KE-EAKKQA--EEEAKAKAAAEAKKKAAEAKKK-------AEAEAKAKAEAKAKAKAEEA 194
Query: 206 HQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQE-EGELA 264
+ E A+ AA E+ ++ + EAA E ++ + + G E
Sbjct: 195 KAKAEAAKAK-----AAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQ 249
Query: 265 GSAESSAGSEESSQ 278
G A +A E +
Sbjct: 250 GGARGNAAGSEVDK 263
Score = 31.0 bits (70), Expect = 3.7
Identities = 13/90 (14%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIER 152
+++++R+ + E++A EA+K + A++A + +R ++ E+ +
Sbjct: 63 AKKEQERQKKLEQQAEEAEKQR----------AAEQARQKELEQRAAAEKAAKQAEQAAK 112
Query: 153 ELRKERLLEAERVKEAYKERVKDVEQKRKR 182
+ +++ E + E E + ++
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEK 142
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 35.4 bits (82), Expect = 0.21
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 9/125 (7%)
Query: 63 RDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREID 122
R+E+DR+ E++ +S +E+ + R R Q+ TA +
Sbjct: 408 REEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEE 467
Query: 123 ELKAKEADLRARLERKRYSNPLREKEKIERELRK---------ERLLEAERVKEAYKERV 173
+ + D ++ E+++ ELR+ E L AER ++ +
Sbjct: 468 LEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQAL 527
Query: 174 KDVEQ 178
++E
Sbjct: 528 DELEL 532
>gnl|CDD|222914 PHA02666, PHA02666, hypothetical protein; Provisional.
Length = 287
Score = 34.5 bits (78), Expect = 0.23
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 2/97 (2%)
Query: 23 KSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKS 82
KS T SS + + + + S+H H + H+ N
Sbjct: 43 KSRPSRQHRSAERTPTTASSLTHENNTAPSRHGKQHS--CKASSRSSHNRGSTSSSHNHH 100
Query: 83 DQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAR 119
+HRR D + ++ ++ Y R
Sbjct: 101 AHRGPHQSAHRRSKHDAVRDTYQPCPQSPETDLYKGR 137
>gnl|CDD|202430 pfam02845, CUE, CUE domain. CUE domains have been shown to bind
ubiquitin. It has been suggested that CUE domains are
related to pfam00627 and this has been confirmed by the
structure of the domain. CUE domains also occur in two
protein of the IL-1 signal transduction pathway, tollip
and TAB2.
Length = 42
Score = 30.5 bits (70), Expect = 0.24
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 983 NFTREDIVTVLTANHGNVESAYVEL 1007
+ E I VL A++GNVE+A L
Sbjct: 14 DLDEEVIRAVLQASNGNVEAAIDAL 38
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 35.0 bits (81), Expect = 0.25
Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 30/185 (16%)
Query: 41 SSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRK 100
++ S+ ++ R E E E S++ R E ++
Sbjct: 862 EELEELIEELESELEALLNERASLEEALALLRSELE---ELSEE--------LRELESKR 910
Query: 101 HRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLL 160
R+ E ++ ++ L+ + +L+ RL + YS L E E +E ++ +
Sbjct: 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERL-SEEYSLTLEEAEALENKIEDDEEE 969
Query: 161 EAERVK--EAYKERVKDV--------EQKRKRYRTRSRSRSPINKAKN-------EMDVD 203
R+K E + + V E+ ++RY + + + +AK E+D
Sbjct: 970 ARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID-R 1028
Query: 204 EAHQR 208
EA +R
Sbjct: 1029 EARER 1033
Score = 34.6 bits (80), Expect = 0.33
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 8/169 (4%)
Query: 41 SSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRK 100
S S K ++ ++ E E + + ++ + E
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
Query: 101 HRDERKAREAQKSKEYTAREIDELKAKEADLRARLERK--RYSNPLREKEKIERELRKER 158
E + + ++ + +DEL+A+ L R + R ER L
Sbjct: 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE--- 841
Query: 159 LLEAERVKEAYKERVKDVEQKRKRYRT-RSRSRSPINKAKNEMDVDEAH 206
+ E E E ++ + + + S + NE E
Sbjct: 842 --DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
Score = 33.1 bits (76), Expect = 0.89
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 26/129 (20%)
Query: 97 EDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLER-----KRYSNPLREKE--- 148
E + E QK A EI L+ ++ LR RL + L E E
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
Query: 149 -----------------KIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRS-R 190
K E E + L E E E + R++++E++ + R++
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
Query: 191 SPINKAKNE 199
I NE
Sbjct: 393 LQIASLNNE 401
Score = 32.7 bits (75), Expect = 1.2
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 79 RNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERK 138
K++ S + E++ E K E +K+ +E++EL+ + LR LE
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724
Query: 139 RYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKN 198
K+ E E+L ER+ + KE + + + + + +A+
Sbjct: 725 SRQISALRKDLARLEAEVEQL--EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
Query: 199 EMDVDEA 205
E++ EA
Sbjct: 783 EIEELEA 789
Score = 32.7 bits (75), Expect = 1.3
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 97 EDRKHRDERKAREAQKSKEYTAREIDELKAK---------EADLRARLERKRYSNPLREK 147
+ + + +EA++ E E+ EL+ K E + +K E
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
Query: 148 EKIERELR--KERLLEAERVKEAYKERVKDVEQKRKRYRTR 186
++E++ + +ERL ER E + +++++E K
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
Score = 31.6 bits (72), Expect = 2.6
Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 34/221 (15%)
Query: 104 ERKAREAQKSKEYTARE--------IDELKAKEADLRA-RLERKRYSNPLREKEKIEREL 154
ER+A +A++ KE A + L+ +L + E K E E++ EL
Sbjct: 206 ERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAE---EELEELTAEL 262
Query: 155 RKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGA 214
+E + E ++ E +++E+ +K + + ++ + R
Sbjct: 263 -QELEEKLEELRLEVSELEEEIEELQKELYA-------LANEISRLEQQKQILRERLA-- 312
Query: 215 RTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSE 274
+ LE + ES+ +E ++ EL ES
Sbjct: 313 -----------NLERQLEELEAQLEELESKLDE-LAEELAELEEKLEELKEELESLEAEL 360
Query: 275 ESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKK 315
E + E+ +E+ A + + A +
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 32.9 bits (76), Expect = 0.26
Identities = 18/91 (19%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 111 QKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYK 170
Q+S A + +L+ + +A LE+ +E +K++ +L+K+ +E A +
Sbjct: 11 QESPAGKAAQ-KQLEKEFKKRQAELEKLE-----KELQKLKEKLQKDAATLSE---AARE 61
Query: 171 ERVKDVEQKRKRY-RTRSRSRSPINKAKNEM 200
++ K++++K + + R + + + + K + E
Sbjct: 62 KKEKELQKKVQEFQRKQQKLQQDLQKRQQEE 92
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 34.5 bits (80), Expect = 0.27
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 90 KSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRAR----LERKRYSNPLR 145
+ ++ + +R EA+K E +E L+AKE + R E K N L+
Sbjct: 21 RIAEKKLGSAEELAKRIIEEAKKEAETLKKEA-LLEAKEEVHKLRAELERELKERRNELQ 79
Query: 146 EKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEA 205
E+ R L++E L +R E+ ++ +++E+K K + ++ +++ + E++ A
Sbjct: 80 RLER--RLLQREETL--DRKMESLDKKEENLEKKEKELSNKEKN---LDEKEEELEELIA 132
Query: 206 HQRGE 210
QR E
Sbjct: 133 EQREE 137
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 34.6 bits (79), Expect = 0.27
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 23/136 (16%)
Query: 211 DDGARTPPGPAAP------------ESRSRQDLEAAGLVVLTDESRSPTPQRDE------ 252
A P GP P E D AA VV + + E
Sbjct: 311 AASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEAD 370
Query: 253 --KPGTGQEEGELAGSAESSAGSEESSQDGS--EDSSQDSSSSDEEENDENEDKADKKEK 308
+ G G+ + + A S+ +S+ ++ E ++ D +
Sbjct: 371 IEREQPGDLAGQAPAAHQVDA-EAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKP 429
Query: 309 KAKKRKKEDASPNESE 324
P E +
Sbjct: 430 DELAVAGPGDDPAEPD 445
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 34.6 bits (79), Expect = 0.30
Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 19/157 (12%)
Query: 170 KERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQ 229
K EQ +R T +R+ P P A E RQ
Sbjct: 24 KRHGGTREQAGRRRGTAARAAKP---------------APPAPTTSGPQVRAVAEQGHRQ 68
Query: 230 DLEAAGLVVLTDESRSPTPQRDE--KPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQD 287
+ +R + G+G E + S + E +S E++S
Sbjct: 69 TESDTETA--EESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGS 126
Query: 288 SSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESE 324
S S + + + + + SPN+
Sbjct: 127 SPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQP 163
Score = 33.8 bits (77), Expect = 0.45
Identities = 32/154 (20%), Positives = 43/154 (27%), Gaps = 13/154 (8%)
Query: 179 KRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVV 238
KR R+ RS R K +RG A P PA S + V
Sbjct: 9 KRSRHTLRSSCRGHC-KRHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVR------AV 61
Query: 239 LTDESRSPTPQ----RDEKPGTGQEEGE--LAGSAESSAGSEESSQDGSEDSSQDSSSSD 292
R + + G +E G+ +GS S GS S GS + S +
Sbjct: 62 AEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPE 121
Query: 293 EEENDENEDKADKKEKKAKKRKKEDASPNESERD 326
E A + P E
Sbjct: 122 NTSGSSPESPASHSPPPSPPSHPGPHEPAPPESH 155
Score = 33.8 bits (77), Expect = 0.48
Identities = 10/118 (8%), Positives = 29/118 (24%)
Query: 203 DEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGE 262
+H + P AP L + + + +
Sbjct: 131 PASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSP 190
Query: 263 LAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASP 320
+E+ S E S + + + + + +++ + ++ P
Sbjct: 191 GPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tyk2 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Tyk2 is widely expressed in
many tissues. It is involved in signaling via the
cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12,
IL-13, and IL-23. It mediates cell surface urokinase
receptor (uPAR) signaling and plays a role in modulating
vascular smooth muscle cell (VSMC) functional behavior
in response to injury. Tyk2 is also important in
dendritic cell function and T helper (Th)1 cell
differentiation. A homozygous mutation of Tyk2 was found
in a patient with hyper-IgE syndrome (HIES), a primary
immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 274
Score = 34.1 bits (78), Expect = 0.32
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 38/163 (23%)
Query: 440 IVMDYVEHDMKSLMETMRSKKQVFIPGEVK-CLMQQLLNAVAHLHDNWILHRDLKTSNLL 498
+V ++VEH ++ K++ +P K + QQL +A+++L D ++H ++ N+L
Sbjct: 93 MVEEFVEH---GPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNIL 149
Query: 499 LSHRGI-------LKVGDFG-----LAREYGSPLKHYTPIVVTLWYRSPELLLGCKEYST 546
L+ G+ +K+ D G L+RE V + + +PE + G ST
Sbjct: 150 LARLGLAEGTSPFIKLSDPGVSFTALSRE---------ERVERIPWIAPECVPGGNSLST 200
Query: 547 PIDMWSVGCIFAEFLCMEPLFTGKSDLEQLSRIFKTMGTPNEK 589
D WS G E +C F G+ L++ TP+EK
Sbjct: 201 AADKWSFGTTLLE-IC----FDGEVPLKER--------TPSEK 230
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 34.8 bits (79), Expect = 0.33
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 264 AGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASP 320
+ S S+ S SS S SS DSSSS EE+ DE +K D++ KR+ P
Sbjct: 1247 SSSTMHSSSSSSSSSCSSSSSSSDSSSS-EEDGDEKNEKEDRERAGGGKRRGRQRLP 1302
Score = 31.7 bits (71), Expect = 2.4
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 267 AESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAK 311
+ESS+ SS S S SSSSD ++E+ D+ ++KE + +
Sbjct: 1245 SESSSTMHSSSSSSSSSCSSSSSSSDSSSSEEDGDEKNEKEDRER 1289
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 34.6 bits (79), Expect = 0.34
Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 29/167 (17%)
Query: 1 MSDEDTPDSLEIKPPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRS 60
+S +++P + EI Q Q + +H + S R + ++ DK+
Sbjct: 173 ISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKE-------- 224
Query: 61 RHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDE---DRKHRDERKAREAQKSKEYT 117
K KE+D+N DG ++ R ++ H D R R K +
Sbjct: 225 ------------KNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKK- 271
Query: 118 AREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAER 164
DE + +R+ + KR S LR+ + +K+ +
Sbjct: 272 ----DEKNVV-SGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDPK 313
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 34.2 bits (79), Expect = 0.36
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 258 QEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKED 317
+ E + + E+ SED D D+++ E +++ ++ + +K
Sbjct: 120 YRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRA 179
Score = 30.7 bits (70), Expect = 4.6
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 255 GTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRK 314
G +EE + + + E D E+S ++ S + E+DE++D D + A + +
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163
Query: 315 KED 317
+
Sbjct: 164 SLE 166
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 34.4 bits (79), Expect = 0.37
Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 266 SAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESER 325
+ + S +S + +++S+D+SS D + + + ++ KK D+S ++S
Sbjct: 33 DSTAKTTSHDSKKSNDDETSKDTSSKDT--DKADNNNTSNQDNNDKKFSTIDSSTSDSNN 90
Query: 326 DVSP 329
+
Sbjct: 91 IIDF 94
Score = 30.5 bits (69), Expect = 5.0
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 265 GSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKA----KKRKKEDASP 320
+SS + +Q ++ S+S+++ N + ++ + +K +
Sbjct: 161 TDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKD 220
Query: 321 NESERDVSPHVIMDQ 335
N+S D + I+DQ
Sbjct: 221 NQSMSDSALDSILDQ 235
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 34.4 bits (79), Expect = 0.39
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 15/130 (11%)
Query: 66 RDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKS----KEYTAREI 121
R+ RH R ++ ++ R ED +A EA +E +
Sbjct: 868 RELRHAATRAAEQRARAARA---ESDAREAAEDAAEA-RAEAEEASLRLRTLEESVGAMV 923
Query: 122 DELKAKEADLRARLERKRYSNPLREKEKIERELRK--ERLLEAERVKEAYKERVKDVEQK 179
DE++A+ A+ RA L RE ++ L E AE + + + +
Sbjct: 924 DEIRARLAETRAALASGG-----RELPRLAEALATAEEARGRAEEKRAEADATLDERAEA 978
Query: 180 RKRYRTRSRS 189
R + R
Sbjct: 979 RDHAIGQLRE 988
Score = 31.3 bits (71), Expect = 3.6
Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 32/226 (14%)
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIE-- 151
RD R + ARE ++ + L+ + LR RLE + S ++ E++E
Sbjct: 282 SRDLGRARDELETAREEERE---LDARTEALEREADALRTRLEALQGSPAYQDAEELERA 338
Query: 152 RELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRS-------------RSPINKAKN 198
R + A ++A +E +E++R+ R + R + +A
Sbjct: 339 RADAEALQAAAADARQAIREAESRLEEERR--RLDEEAGRLDDAERELRAAREQLARAAE 396
Query: 199 EMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPG-TG 257
+ AH E D A AA E + L+A ++ QR E+
Sbjct: 397 RAGLSPAH-TAEPDAA-----LAAQELQELGALDAR-----RQDADRVIAQRSEQVALLR 445
Query: 258 QEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKA 303
+ + + + A + + E++ Q ++ ++ + + + A
Sbjct: 446 RRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGA 491
>gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain. Present in Rad23,
SNF1-like kinases. The newly-found UBA in p62 is known to
bind ubiquitin.
Length = 37
Score = 30.1 bits (69), Expect = 0.39
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 972 QKKFNDLMSRGNFTREDIVTVLTANHGNVESA 1003
++K + L+ G F+RE+ + L A +GNVE A
Sbjct: 2 EEKIDQLLEMG-FSREEALKALRAANGNVERA 32
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 34.2 bits (79), Expect = 0.40
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 143 PLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDV 202
PL E E+ RE +E L E E KE ++ K +E+K K+ K D
Sbjct: 62 PLEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKK------------AIKKGKDE 109
Query: 203 DEAHQRGEDDGARTPPGPAAP 223
+ + + A P P P
Sbjct: 110 EALAEELLELEAEEPEPPLRP 130
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 32.7 bits (75), Expect = 0.44
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAE 163
ER EAQ +E++E + + +++ + + +E E+I E++ E E E
Sbjct: 50 ERLKEEAQALLAEYEQELEEAREQASEIIEQAK--------KEAEQIAEEIKAEAEEELE 101
Query: 164 RVKEAYKERVKDVEQKRKR 182
R+KEA + ++E +++R
Sbjct: 102 RIKEAAEA---EIEAEKER 117
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 33.6 bits (77), Expect = 0.45
Identities = 40/219 (18%), Positives = 73/219 (33%), Gaps = 36/219 (16%)
Query: 92 HRRRDEDRKHRDERK-AREAQKSKEYTARE-IDELKAK-----EADLRARLERKRYSNPL 144
R +E ++ R A +E E ++ELK + D+ + LE
Sbjct: 123 KEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNSMLEALF----R 178
Query: 145 REKEKIERELRKERLL--------EAERVKEAYKERVKDVEQKRKRYRTRSRSRSPI-NK 195
REK++ E E ++ L E E + + + +++ +S S K
Sbjct: 179 REKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSPAK 238
Query: 196 AKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPG 255
+ + A + ++ + LVV + T Q
Sbjct: 239 PTSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDA---LSSLVVRKKAAPESTSQSP---- 291
Query: 256 TGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEE 294
SAE ++ S +++ + S S D S SDE
Sbjct: 292 ---------SSAEPTSESPQTAGNSSLSSLGDYSDSDES 321
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 34.1 bits (78), Expect = 0.46
Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKE 157
ERK ++ +K+KE +E+ +LKA + + +A+L+ ++ S+ +K E++ RK
Sbjct: 19 ERKKKKEEKAKE---KELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKR 69
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 33.5 bits (76), Expect = 0.47
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 181 KRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLT 240
KR+ +S S S ++ D D + + GE++ + + ++ EA T
Sbjct: 40 KRFSVQSGSDS----SEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENT---T 92
Query: 241 DESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENE 300
+ + D PGTG G A AG+ + +++ D +EEE +E E
Sbjct: 93 LSTVTLGYGGDATPGTG-NIGLAALQLPKKAGNAG--KKATKEDESDEDEEEEEEEEEEE 149
Query: 301 DKADKKEK 308
+ ++ E+
Sbjct: 150 AEVEENEQ 157
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 33.8 bits (77), Expect = 0.48
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARL-----ERKRYSNPLREKEKIERELRKER 158
E + +EAQ S E + E + L A+ A+ + R+ + + + +E +++ ++
Sbjct: 191 EEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGT-QDI 249
Query: 159 LLEAERVKEAYKERVKDVEQKRKRYRTRSRSR 190
E ER+K K+R+K + +R+ T
Sbjct: 250 EAELERMKGELKQRLKKMTIQRRDEETERIDL 281
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 33.4 bits (76), Expect = 0.57
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 27/152 (17%)
Query: 419 QHPNIVTVREI-VVGSNMDKIFIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLL- 476
+HPNI+T + GS + I M Y SL++T F G + L+ +L
Sbjct: 57 RHPNIMTSWTVFTTGSWLWVISPFMAY--GSANSLLKTY------FPEGMSEALIGNILF 108
Query: 477 ---NAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTPIVVT---- 529
+ +LH N +HR++K S++L+S G++ + GL+ Y S +++ V
Sbjct: 109 GALRGLNYLHQNGYIHRNIKASHILISGDGLVSLS--GLSHLY-SLVRNGQKAKVVYDFP 165
Query: 530 ------LWYRSPELL-LGCKEYSTPIDMWSVG 554
L + SPELL Y+ D++SVG
Sbjct: 166 QFSTSVLPWLSPELLRQDLYGYNVKSDIYSVG 197
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 33.7 bits (77), Expect = 0.58
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 263 LAGSAESSAGSEESSQDGSE-DSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPN 321
L S + S + GSE DS DSS S + + K K KK +K KK
Sbjct: 112 LPESLSETKQVTVSKRKGSELDSDSDSSDSSKGK------KLVNKPKKRQKYKKATIQSP 165
Query: 322 ESERDVSPHVIMDQDVDMEIELEKDTLPPYLPAIQGCRS 360
S + + V ++ K L + P ++ +S
Sbjct: 166 TSLTEEENYNTEICTVAPTDQIAKYFLMDFSPYLEDAKS 204
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 32.7 bits (75), Expect = 0.58
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 282 EDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESE 324
+ S + ++++D+ +DK++KK++K + K ED + + SE
Sbjct: 89 KKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 33.2 bits (76), Expect = 0.59
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 261 GELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKK 315
GE + E+ S DSS +SS + D NE+ D+ EK++ K
Sbjct: 277 GEAIDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEED-DRGEKESNGAKS 330
Score = 29.4 bits (66), Expect = 9.4
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 259 EEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKK 309
E+ + + + +S SS +S D E D+ +K K
Sbjct: 282 EDSDYSSDEDDD--DYDSYDSSDSASSDSNSDVDTNEEDDRGEKESNGAKS 330
>gnl|CDD|223023 PHA03249, PHA03249, DNA packaging tegument protein UL25;
Provisional.
Length = 653
Score = 33.8 bits (77), Expect = 0.60
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 8/137 (5%)
Query: 208 RGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSA 267
R G R P R++ + L + P K + +
Sbjct: 80 RRAGMGGRNKAT--KPSRRNKTTQCRPTSLALATAATMPATPSSGKSPKVSSPPSIPSLS 137
Query: 268 ESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDV 327
E G+E +S + + S+ + E D+ D A+ E ED ER +
Sbjct: 138 EEDEGAERNSGGDDSSHTDNESTQSQPEADDEPDLAEGHEFSFCDSDIEDFEQECFERSL 197
Query: 328 S------PHVIMDQDVD 338
+ P V+ +V+
Sbjct: 198 ADNLGFEPSVVSPPNVE 214
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 33.4 bits (76), Expect = 0.62
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 377 VVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLR-EINTLLKAQHPNIVTVREIVVGSNM 435
V A+ K T E V ++R+ +E +T L+ E++ HPNIV R + N
Sbjct: 15 TVNLARYKPTGEYVTVRRINLEACTNEM-VTFLQGELHVSKLFNHPNIVPYRATFIADN- 72
Query: 436 DKIFIVMDYVEH-DMKSLMETMRSKKQVFIPG----EVKCLMQQLLNAVAHLHDNWILHR 490
++++V ++ + K L+ T F+ G + ++Q +L A+ ++H +HR
Sbjct: 73 -ELWVVTSFMAYGSAKDLICTH------FMDGMSELAIAYILQGVLKALDYIHHMGYVHR 125
Query: 491 DLKTSNLLLSHRGILKVGDFGLAR-----EYGSPLK--HYTP--IVVTLWYRSPELL-LG 540
+K S++L+S G KV GL +G L+ H P V L + SPE+L
Sbjct: 126 SVKASHILISVDG--KVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQN 183
Query: 541 CKEYSTPIDMWSVG 554
+ Y D++SVG
Sbjct: 184 LQGYDAKSDIYSVG 197
>gnl|CDD|146915 pfam04513, Baculo_PEP_C, Baculovirus polyhedron envelope protein,
PEP, C terminus. Polyhedra are large crystalline
occlusion bodies containing nucleopolyhedrovirus virions,
and surrounded by an electron-dense structure called the
polyhedron envelope or polyhedron calyx. The polyhedron
envelope (associated) protein PEP is thought to be an
integral part of the polyhedron envelope. PEP is
concentrated at the surface of polyhedra, and is thought
to be important for the proper formation of the periphery
of polyhedra. It is thought that PEP may stabilise
polyhedra and protect them from fusion or aggregation.
Length = 140
Score = 31.9 bits (73), Expect = 0.71
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 951 DALRLHNGNVWAAVTECVETRQKKFNDLMSRGNFTREDIVTVLTANHGNVESAYVELNKT 1010
+A+RL N + A +T ++ Q + NDL + D+ T L N+ A +L T
Sbjct: 23 NAIRLQNVQIAAQLTTLLDAIQTQLNDLSTDLTSLLADLDTRLDTLLTNLTDALNQLQDT 82
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 32.0 bits (73), Expect = 0.78
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 284 SSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSP 329
S + ++EE DE E + + K K KK+ P P
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKP 139
Score = 29.3 bits (66), Expect = 5.1
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 275 ESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESE 324
E S E+ + S+DE E ED + K + +K+K+E P +
Sbjct: 90 ELSSSDDEEEETEEESTDETEQ---EDPPETKTESKEKKKREVPKPKTEK 136
>gnl|CDD|176962 CHL00019, atpF, ATP synthase CF0 B subunit.
Length = 184
Score = 32.1 bits (74), Expect = 0.79
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 103 DERKAREAQKSKEYTAREIDELKAKEADLRARLE--RKRYSNPLREKEKIERELRKERLL 160
D RK T R +E +EA +LE R R LR+ E E+R
Sbjct: 54 DNRKQTILN-----TIRNSEER-REEA--IEKLEKARAR----LRQAELEADEIRVNGYS 101
Query: 161 EAERVKE----AYKERVKDVEQKRK 181
E ER KE KE ++ +E +
Sbjct: 102 EIEREKENLINQAKEDLERLENYKN 126
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 33.3 bits (76), Expect = 0.83
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 28/137 (20%)
Query: 61 RHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRR------RDEDRKHRDERKAR---EAQ 111
R + ERD H K +R+ K+ ++ ++E RK+R+E + E Q
Sbjct: 48 RGKAERDAEHIKKTAKRES----------KALKKELLLEAKEEARKYREEIEQEFKSERQ 97
Query: 112 KSKEYTAREIDE---LKAKEADLRAR---LERKRYSNPLREKEKIERELRKERLLEAERV 165
+ K+ +R + L K+ +L ++ LE K S + K ERE + E+L E
Sbjct: 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKL---EEQ 154
Query: 166 KEAYKERVKDVEQKRKR 182
K+A ERV + Q R
Sbjct: 155 KKAELERVAALSQAEAR 171
Score = 31.4 bits (71), Expect = 2.6
Identities = 29/142 (20%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 44 SSQQDKSSSQHKSHHRSRH---RDERDRRHHHKE-----KERDRNKSDQSDGGHKSHRRR 95
+++Q+ + + K+ + H +R+ + KE KE R ++ + KS R+
Sbjct: 39 NAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQE 98
Query: 96 DEDRKHR-DERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIEREL 154
+ + R ER +K + +++E L++KE L + S + E+E+ +L
Sbjct: 99 LKQIESRLTERATSLDRKDENLSSKE-KTLESKEQSLTDK------SKHIDEREEQVEKL 151
Query: 155 RKERLLEAERVKEAYKERVKDV 176
+++ E ERV + +++
Sbjct: 152 EEQKKAELERVAALSQAEAREI 173
>gnl|CDD|205235 pfam13054, DUF3915, Protein of unknown function (DUF3915). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 120 amino acids in
length.
Length = 116
Score = 31.4 bits (71), Expect = 0.83
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 59 RSRHRDERDRRHHHKEKERDRNKSDQ 84
R H ER+ +E+ER+R K Q
Sbjct: 12 RDCHHHERE--DFEREREREREKEPQ 35
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 33.2 bits (76), Expect = 0.84
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 274 EESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKK 315
EE + + ++ ++ EEE DE E+K +KK+K K ++
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 32.0 bits (73), Expect = 1.7
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 268 ESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKED 317
E EE ++ ++ + ++ +EE ++E E + KK+ K K +
Sbjct: 34 EVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
Score = 30.5 bits (69), Expect = 6.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 271 AGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKED 317
E+ + E+ + D +EE ++ E K KK KK K+ E
Sbjct: 40 EEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKK--KKTKKVKETTTEW 84
Score = 30.1 bits (68), Expect = 8.0
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 282 EDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASP 320
E ++ EE+ +E E DK+E+ ++ +KE+
Sbjct: 34 EVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKK 72
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 33.3 bits (76), Expect = 0.89
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 7/173 (4%)
Query: 162 AERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPA 221
+E +K + E++K + S + M + E + R
Sbjct: 324 SEDLKSSPWEKLKPESESIVEAEPPSPRTLLA--KQAAMSESSSEDSDESEWERQELKRN 381
Query: 222 APE-----SRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEES 276
S S + L+A G + DE + + D++ ++ L S +
Sbjct: 382 NVAFVDDGSLSPRTLQAIGQALDDDEDKKVSASSDDQASPSKKTKMLLISRIEVEDDDLD 441
Query: 277 SQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSP 329
D E ++ N + E A K + +A P + +
Sbjct: 442 YLDQGEGIPLMAALQLSSVNSKPEAVASTKIAREVTSSGHEAVPKAVQSLLLG 494
>gnl|CDD|222016 pfam13266, DUF4057, Protein of unknown function (DUF4057). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 279 and 322 amino
acids in length.
Length = 297
Score = 32.5 bits (74), Expect = 0.92
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 216 TPPGPAAPESRSRQDLEAAGLVV----LTDESRSPTPQRDEKPGTGQEEGELAGSAESSA 271
+P +AP R Q + VV +TDE +R KP +G + E+ GS +A
Sbjct: 26 SPASTSAPARRPHQPSDGISKVVFGGQVTDEEAESLNKR--KPCSGYKLKEMTGSGIFAA 83
Query: 272 GSE-ESSQDGSEDSSQDSSS 290
E ++S+ S + + + +S
Sbjct: 84 NGENDASESASANPTANKTS 103
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 33.1 bits (75), Expect = 0.94
Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 2/152 (1%)
Query: 68 RRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAK 127
++H + E + K D KS + + +++K +++ + ++ +K E + L
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDS 235
Query: 128 EADLRARLERKRYSNPLR-EKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTR 186
A + E S + E + + EAE K++ K + K ++K K + +
Sbjct: 236 PASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKK-QRKEKEEKKK 294
Query: 187 SRSRSPINKAKNEMDVDEAHQRGEDDGARTPP 218
+ ++ ++ Q G + PP
Sbjct: 295 KKKHHHHRCHHSDGGAEQPVQNGAVEEEPLPP 326
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 32.9 bits (75), Expect = 0.99
Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 28/124 (22%)
Query: 194 NKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEK 253
N N+ D D++ D G + ++ E +
Sbjct: 136 NDQTNDFDQDDSSNSQTDQGLKQSVNLSSAEKLIEEK----------------------- 172
Query: 254 PGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSS---SDEEENDENEDKADKKEKKA 310
GQ E + G E +++DG + S D SD + +D + + A++ + +
Sbjct: 173 --KGQTENTFKFYNFGNDGEEAAAKDGGKSKSSDPGPLNDSDGQGDDGDPESAEEDKAAS 230
Query: 311 KKRK 314
R
Sbjct: 231 NTRA 234
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 31.6 bits (72), Expect = 1.1
Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 22/156 (14%)
Query: 369 RIEEGTYGVVYRAKDKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKAQHPNIVTVRE 428
++ G VY K D LK RE+ L + +
Sbjct: 5 LLKGGLTNRVYLLGTKDED--YVLKI----NPSREKGADREREVAILQLLARKGLPVPKV 58
Query: 429 IVVGSNMDKIFIVMDYVE-HDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHD--- 484
+ G + +++M+++E + + E + + +QL +A LH
Sbjct: 59 LASGESDGWSYLLMEWIEGETLDEVSEEEKED-----------IAEQLAELLAKLHQLPL 107
Query: 485 NWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPL 520
+ H DL N+L+ IL + D+ A YG P
Sbjct: 108 LVLCHGDLHPGNILVDDGKILGIIDWEYAG-YGPPA 142
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 31.1 bits (71), Expect = 1.1
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 258 QEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENE 300
++E A ++E S D ED + S ++ + ENE
Sbjct: 8 EDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 32.7 bits (75), Expect = 1.1
Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 91 SHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKI 150
+ + +E+ + K + + + + L++KEA L +L R + REKE++
Sbjct: 180 AELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQL-RLEFE---REKEEL 235
Query: 151 ERELRKERLLEAERVKEAYKERVKDV------EQKRK 181
++ ++ E ER EA+++++K+ E +R+
Sbjct: 236 RKKYEEKLRQELERQAEAHEQKLKNELALQAIELQRE 272
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 32.6 bits (74), Expect = 1.1
Identities = 46/278 (16%), Positives = 88/278 (31%), Gaps = 25/278 (8%)
Query: 30 KDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSR------HRDERDRRHHHKEKERD-RNKS 82
+D + + Q + + ++ R RD + E R++
Sbjct: 138 RDSSKQRFFLRRTKTLLQRELEDRPETGVAGRVTVPHGSAKRRDFQDKLFSGEFVKRDEP 197
Query: 83 DQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSN 142
DQ+ KS R DE + K + + S++ ++ + R+ K +N
Sbjct: 198 DQNSPDVKSDTRADESISDLEFEKFAKRRGSRDVDPEDLYRSIMMLQGIHERIREKSSAN 257
Query: 143 PLREKEKI----ERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAK- 197
++ E+ R+ + ER ++ R D + RS++
Sbjct: 258 SRSDERSSESIQEQVERRPSTSDIERNSQSLTRRYDDKSFDKAVRLRRSKTIDRAEACDL 317
Query: 198 NEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTG 257
E+D + ++ D + +L+ SR P G
Sbjct: 318 EELDRAKDFEKMTYDNWKAHHRKKKNFRPRGWNLK------FRKASRFPKDSDRNYEDNG 371
Query: 258 QEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEE 295
SA SS GSEE S E+ + + + E
Sbjct: 372 -----NHLSASSSFGSEEPSLSSEENLY--PTYNKKRE 402
>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain. This small domain is composed of
three alpha helices. This family includes the previously
defined UBA and TS-N domains. The UBA-domain (ubiquitin
associated domain) is a novel sequence motif found in
several proteins having connections to ubiquitin and the
ubiquitination pathway. The structure of the UBA domain
consists of a compact three helix bundle. This domain is
found at the N terminus of EF-TS hence the name TS-N. The
structure of EF-TS is known and this domain is implicated
in its interaction with EF-TU. The domain has been found
in non EF-TS proteins such as alpha-NAC and MJ0280.
Length = 37
Score = 28.6 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 978 LMSRGNFTREDIVTVLTANHGNVESA 1003
L G F+RE+ L A +GNVE A
Sbjct: 9 LREMG-FSREEAKKALRATNGNVERA 33
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic
phosphoprotein 1 (DMP1) gene has been mapped to human
chromosome 4q21. DMP1 is a bone and teeth specific
protein initially identified from mineralised dentin.
DMP1 is primarily localised in the nuclear compartment
of undifferentiated osteoblasts. In the nucleus, DMP1
acts as a transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates
mineralised matrix formation extracellularly, at later
stages of osteoblast maturation. The DMP1 gene has been
found to be ectopically expressed in lung cancer
although the reason for this is unknown.
Length = 514
Score = 32.7 bits (74), Expect = 1.2
Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 46/379 (12%)
Query: 2 SDEDTPD---SLEIKPPQA--STQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQH-- 54
SDED+ D S E PQ S Q S R D + S QD S +H
Sbjct: 136 SDEDSADTTQSSEDSTPQGENSAQDTTSESRDL-DNEDEVDSRPEGGDSTQDSESEEHWV 194
Query: 55 -------KSHHRSRHRDERDRRHHHKEKER-DRNKSDQSDGGHKSHRRRDEDRKHRDERK 106
SH D+ + E R +R S S G KS + ED + +
Sbjct: 195 GGGSEGESSHGDGSEFDDEGMQSDDPESTRSERGNSRMSSAGLKSKESKGEDEEQASTQD 254
Query: 107 AREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVK 166
+ E+Q S EY +R+ ++R+ + L + +E K E +
Sbjct: 255 SGESQ-SVEYPSRKFFR--------KSRISEEDGRGELDDSNTMEV---KSDSTENAGLS 302
Query: 167 EAYKERVKDVEQKRKRYRTRSRSRS---PINKAKNEMDV------DEAHQRGEDDGARTP 217
++ + + ++ + +++ S+ P +++ E D+ E+ + +
Sbjct: 303 QSREHSRSESQEDSEENQSQEDSQEVQDPSSESSQEADLPSQENSSESQEEVVSESRGDN 362
Query: 218 PGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEE-- 275
P S ++D E++ L S S + +E+ + E L+ S ES +E+
Sbjct: 363 PDNTTSHSEDQEDSESSEEDSLDTPSSSESQSTEEQADSESNE-SLSSSEESPESTEDEN 421
Query: 276 -SSQDG--SEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVI 332
SSQ+G S +S +S S + + ++ + D + + R KED++ ES S
Sbjct: 422 SSSQEGLQSHSASTESRSQESQSEQDSRSEEDDSDSQDSSRSKEDSNSTES---ASSSEE 478
Query: 333 MDQDVDMEIELEKDTLPPY 351
Q + EIE K T+ Y
Sbjct: 479 DGQPKNTEIESRKLTVDAY 497
>gnl|CDD|164795 PHA00370, III, attachment protein.
Length = 297
Score = 32.2 bits (73), Expect = 1.2
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 23/128 (17%)
Query: 255 GTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDE---EENDENEDKADKKEKKAK 311
G G + G G + + ++E G D + ++++ + E+ND+N + D E+ K
Sbjct: 119 GGGSDGGGSEGGSTGKSLTKEGVGAGDFDYPKMANANKDALTEDNDQNALQKDADEQLDK 178
Query: 312 KRKKEDASPNESERDVSPHV---------------IMDQDVD-----MEIELEKDTLPPY 351
+ + R V V MDQ + +E L L P
Sbjct: 179 ASASVSDAISGFMRGVGGLVDNGGGESGQFAGSNSEMDQLGEGDGSPLESFLNDGALRPS 238
Query: 352 LPAIQGCR 359
LP GC
Sbjct: 239 LPEGHGCT 246
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 32.1 bits (73), Expect = 1.3
Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 247 TPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENED 301
P+ DE G+EE GS++S + ++S + E +++ + ++ +++D
Sbjct: 229 DPKEDEDDDQGEEEES--GSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDD 281
Score = 30.6 bits (69), Expect = 4.0
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 246 PTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDE 298
P D+ G +E G +E S S E + G ++++ S+ + +D
Sbjct: 230 PKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
Score = 30.6 bits (69), Expect = 4.2
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 239 LTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDE 298
L DE S + +E +E+ + E +GS +S + S+ SS++ S + E +
Sbjct: 212 LGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEA 271
Query: 299 NED 301
+ D
Sbjct: 272 SAD 274
Score = 29.8 bits (67), Expect = 6.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 269 SSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEK--KAKKRKKEDASPNESE 324
S +EE + S+D+ D+ + DE++D+ +++E + DAS E E
Sbjct: 205 SMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEME 262
Score = 29.4 bits (66), Expect = 9.5
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 276 SSQDGSEDSSQDSSSSDEEEN-DENEDKADKKEKKAKKRKK--EDASPNESERDVS 328
SS D +E+ + S+D E+N DE++ K D+ + + ++ + D+ +S+
Sbjct: 204 SSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSE 259
>gnl|CDD|205278 pfam13097, CENP-U, CENP-A nucleosome associated complex (NAC)
subunit. CENP-U is one of the components that assembles
onto the CENP-A-nucleosome associated complex (NAC). The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. FTA4 is the
equivalent component of the fission yeast Sim4 complex.
Length = 174
Score = 31.5 bits (71), Expect = 1.3
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 241 DESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENE 300
+ S E+P + L+ S ++S S+ SS+D S +++ +++
Sbjct: 7 RKVPSAERPSSERPEVTSDAASLSEKPASDVTPPKTSPSSSKPSSEDESPANQSQSET-- 64
Query: 301 DKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQ 335
+K+ +RKK +S + S+ S HV +
Sbjct: 65 ----QKKLSPGRRKKPRSSHSGSDSSDSVHVWCLE 95
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase;
Provisional.
Length = 513
Score = 32.6 bits (74), Expect = 1.3
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 264 AGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNES 323
S+ES E S++ ED S SS +DENED + + + R + P+E+
Sbjct: 272 MSSSESEENHGEISEEDEEDLSF--SSIPSGSSDENEDILKFQSSQVQIRARWLHEPDET 329
Query: 324 ERDVSPH 330
+R + H
Sbjct: 330 DRISASH 336
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.4 bits (74), Expect = 1.4
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 102 RDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLE 161
R +RK + AQ++KE +E++ +E L+ +L R KE I +E+ ++
Sbjct: 274 RPKRKTK-AQRNKEKRRKELEREAKEEKQLKKKLA-----QLARLKE-IAKEV-AQKEKA 325
Query: 162 AERVKEAYKERVKDVEQKRKR 182
R KE KER + + KR++
Sbjct: 326 RARKKEQRKERGEKKKLKRRK 346
Score = 31.6 bits (72), Expect = 2.4
Identities = 14/96 (14%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 64 DERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDE 123
DE E E NK + K+ R ++ ++ ++ + + +K + ++
Sbjct: 255 DESAWEGFESEYE-PINKPVRPKRKTKAQRNKE--KRRKELEREAKEEKQLKKKLAQLAR 311
Query: 124 LKAKEADLRARLERKRYSNPLREKEKIERELRKERL 159
LK ++ + + + R++ +++L++ +L
Sbjct: 312 LKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKL 347
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 32.2 bits (74), Expect = 1.4
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 105 RKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAER 164
+K ++ +++ E +I+E K + L + + + L + E+I EL ++ L+ ++
Sbjct: 379 KKYKKLKRAVEAVEEQIEETKEEIEYLESVEAQLENAESLEDLEEIREELIEQGYLKEKK 438
Query: 165 VK 166
K
Sbjct: 439 RK 440
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 31.6 bits (72), Expect = 1.5
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 132 RARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSR 188
RA+LE K+ RE E+ ERE RK+ + E ++ +E ++ E+K++ + R
Sbjct: 8 RAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
>gnl|CDD|187850 cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas1 is the most universal CRISPR system protein thought
to be involved in spacer integration; Cas1 is
metal-dependent deoxyribonuclease, also binds RNA; Shown
to possess a unique fold consisting of a N-terminal
beta-strand domain and a C-terminal alpha-helical
domain.
Length = 262
Score = 31.9 bits (73), Expect = 1.5
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 129 ADLRARLE------RKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKD--VEQKR 180
AD R RLE R+ L +E+ LR LE RV+EAY+ + V K
Sbjct: 97 ADPRRRLEVARRMYAMRFGEELPPGLTLEQ-LRG---LEGARVREAYRLLAEKYGVPWKG 152
Query: 181 KRY-RTRSRSRSPINKA 196
+RY + P+N+A
Sbjct: 153 RRYDPNDWEAGDPVNRA 169
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 32.2 bits (73), Expect = 1.5
Identities = 45/226 (19%), Positives = 74/226 (32%), Gaps = 49/226 (21%)
Query: 23 KSHHRSHKDKHSS------HRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKE 76
+HH H D + ++ S SS S + S+ S + K
Sbjct: 276 NNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKH 335
Query: 77 RDRNKSDQSDGGHK---------SHRRRDEDRK--------HRDERKAREAQKSKEYTAR 119
+RNKS+ S H S + +K RD +K +
Sbjct: 336 SNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANGTVEN 395
Query: 120 EIDELKAKEADLRARLER--KRYSNPLREKEKIERELRK--------ERLLEAE------ 163
I E K RLE+ K+ L++ + E ELR ER L+++
Sbjct: 396 CIPENKISTPSAIERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKK 455
Query: 164 -------RVKEAYKERVKD---VEQKRKRYRTRSRSRSPINKAKNE 199
++ + KD ++ KR ++ + SR K E
Sbjct: 456 ENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAE 501
Score = 32.2 bits (73), Expect = 1.9
Identities = 33/193 (17%), Positives = 76/193 (39%), Gaps = 16/193 (8%)
Query: 24 SHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSD 83
S +SH + S + S + + K +S+ S R +D + + +
Sbjct: 343 SSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANGTVENCIPE--N 400
Query: 84 QSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNP 143
+ R + +K + E + A++++ +I L + E L++ L + + N
Sbjct: 401 KISTPSAIERLEQDIKKLQAELQQ--ARQNESELRNQISLLTSLERSLKSDLGQLKKEND 458
Query: 144 L-----------REKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSP 192
+ ++K+K + E+ L++E E+ E+KRK+ + +R+
Sbjct: 459 MLQTKLNSMVSAKQKDK-QSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAA 517
Query: 193 INKAKNEMDVDEA 205
A + + E+
Sbjct: 518 AQAAASREECAES 530
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 32.0 bits (73), Expect = 1.5
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 24 SHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSD 83
S R HK K SS R+ S + + KSS+ H +R K
Sbjct: 63 SRSRLHKRKKSSRRSP-MSDTLLKSKSSAHLLHHQSTRSHRRSKSGTTSPRKPSSSAHRR 121
Query: 84 QSD 86
++D
Sbjct: 122 RND 124
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 32.4 bits (74), Expect = 1.5
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAK-----EADLRARLERKRYSNPLREKE 148
RR + + +K + Q ELK + + L RK Y + L
Sbjct: 761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACII 820
Query: 149 KIERELRKERLL------EAERVKEAYKERVKDVEQKRKRYRT 185
K+++ +++E+ L E E ++ + +KR+
Sbjct: 821 KLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSL 863
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 32.0 bits (72), Expect = 1.5
Identities = 37/188 (19%), Positives = 64/188 (34%), Gaps = 35/188 (18%)
Query: 131 LRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSR 190
+RAR RK+ S E E++E+++ + LLE + ++ S
Sbjct: 188 VRARRFRKKSSK--IEIEEVEKKV--DDLLEKDM---------------------KAESV 222
Query: 191 SPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQR 250
S + K + E+ E E+ P P SR E G +E S
Sbjct: 223 SVVLKDEKELARQERVSSWEN----FKEEPGEPLSRPALKKEKQGAEEEGEEGMS----- 273
Query: 251 DEKPGTGQ-EEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKK 309
+E G E S +E ++ + S +E +E E+ + +E +
Sbjct: 274 EEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENE 333
Query: 310 AKKRKKED 317
D
Sbjct: 334 RHTELLAD 341
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 32.4 bits (74), Expect = 1.5
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 267 AESSAGSEESSQDGSEDSSQDSSSSDE------EENDENEDKADKKEKKAKKRKKEDASP 320
+ ++ ++ ++ S +D D EN E E+K + K+KK KK+KK+ +
Sbjct: 12 QQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNL 71
Query: 321 NESER-----DVSPHVIMDQD-------VDMEIELEKDTLPPYLP 353
E+ V QD + + K T PP +P
Sbjct: 72 GEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEWKQTQPPTIP 116
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 31.6 bits (72), Expect = 1.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 268 ESSAGSEESSQDGSEDSSQD-SSSSDEEENDENED-KADKKEKKAKKRKKEDASPNESER 325
S GSE + + + + + +EEE E + K KKEKK KK KKE + +
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184
Query: 326 D 326
Sbjct: 185 K 185
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 30.5 bits (69), Expect = 1.6
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 19 TQLHKSHHRSHKDKH-SSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKER 77
QL K ++ + H S +Q KSS HK + K+R
Sbjct: 42 KQLLKECQKTSQLIHLSQQLQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKR 101
Query: 78 DRNKSDQS 85
R+ S S
Sbjct: 102 RRSSSSSS 109
Score = 29.3 bits (66), Expect = 3.7
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 13 KPPQASTQLHKSHHRSH-----KDKHSSHRTHGSSSSSQQDKSSS 52
+ + T K H K S+ + SSSSS SSS
Sbjct: 71 QQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSSSSSSSSSSS 115
Score = 28.5 bits (64), Expect = 7.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 22 HKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKS 56
H S + K R SSSSS SSS +S
Sbjct: 87 HVSSRSAKKISAKKRRRSSSSSSSSSSSSSSSSES 121
>gnl|CDD|147051 pfam04698, MOBP_C-Myrip, Myelin-associated oligodendrocytic basic
protein (MOBP). MOBP is abundantly expressed in central
nervous system myelin, and shares several
characteristics with myelin basic protein (MBP), in
terms of regional distribution and function. This family
is the middle and C-terminal regions of MOBP which has
been shown to be essential for normal arrangement of the
radial component in central nervous system myelin. Most
member-proteins carry a FVHE-PHD type zinc-finger at
their N-terminus.
Length = 710
Score = 32.5 bits (73), Expect = 1.6
Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 31/193 (16%)
Query: 126 AKEADLRARL---ERKRYSNPLREKEKIERELR---KERLLEAERVKEAYKERVKDVEQK 179
++EA +A+L +RK NP EK + EL + E + E +
Sbjct: 314 SREAGCQAKLSWLQRKAPKNPAAEKMPLHGELDVNFNPQAAGGETSDSSDPEEALHTADR 373
Query: 180 RKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAP-----ESRSRQDLEAA 234
R R R+R G ++ + P P A ++ DL
Sbjct: 374 RARRWRRARL-------------------GPEEPNKELPSPGAHLRALDTAQVSDDLSET 414
Query: 235 GLVVLTDESRSPTPQRDEKPGTGQEEGELAGS-AESSAGSEESSQDGSEDSSQDSSSSDE 293
+ + +S T +EK E + S E+S+G ++ S+ +E +Q S S E
Sbjct: 415 DISNEAQDPQSLTDSTEEKLRNRLYELAMKMSEKETSSGEDQESEPKAEPENQKESLSSE 474
Query: 294 EENDENEDKADKK 306
+ N +++ KK
Sbjct: 475 DNNQGVQEELKKK 487
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 32.2 bits (72), Expect = 1.6
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 55 KSHHRSRHRDERDRR---HHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQ 111
K H RSR R ++ + H R+ + + RR R R RK RE +
Sbjct: 56 KVHSRSRWRHMKEAKSMGRHEGAGRREGTREARMPSKELWMRRLRILR--RLLRKYREEK 113
Query: 112 KSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKE 171
K + RE+ +KAK R + + + ++ ++K ER+L ++ L A+R+K+
Sbjct: 114 KIDRHIYREL-YVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQ--LAAKRLKDEQHR 170
Query: 172 RVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDL 231
++ RKR + R R+R A A ++ + AAP +
Sbjct: 171 HKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPA 230
Query: 232 EAAG 235
+AA
Sbjct: 231 KAAA 234
>gnl|CDD|221514 pfam12297, EVC2_like, Ellis van Creveld protein 2 like protein.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 571 and 1310 amino
acids in length. There are two conserved sequence
motifs: LPA and ELH. EVC2 is implicated in Ellis van
Creveld chondrodysplastic dwarfism in humans. Mutations
in this protein can give rise to this congenital
condition. LIMBIN is a protein which shares around 80%
sequence homology with EVC2 and it is implicated in a
similar condition in bovine chondrodysplastic dwarfism.
Length = 429
Score = 32.1 bits (73), Expect = 1.6
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 105 RKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLL--EA 162
RK EAQ +E E E K A R E S+ L +E+E + LL +
Sbjct: 231 RKKMEAQHQREMAEMEQAEELLKRAPER---EAVECSSLLDTLHGLEQEHLQRSLLLQQE 287
Query: 163 ERVKEAYKE 171
E +A+++
Sbjct: 288 EDFAKAHRQ 296
>gnl|CDD|153370 cd07686, F-BAR_Fer, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Fer (Fes related)
tyrosine kinase. F-BAR domains are dimerization modules
that bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Fer (Fes related) is a cytoplasmic (or nonreceptor)
tyrosine kinase expressed in a wide variety of tissues,
and is found to reside in both the cytoplasm and the
nucleus. It plays important roles in neuronal
polarization and neurite development, cytoskeletal
reorganization, cell migration, growth factor signaling,
and the regulation of cell-cell interactions mediated by
adherens junctions and focal adhesions. Fer kinase also
regulates cell cycle progression in malignant cells. It
contains an N-terminal F-BAR domain, an SH2 domain, and
a C-terminal catalytic kinase domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 234
Score = 31.6 bits (71), Expect = 1.7
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 148 EKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMD 201
++IE E+ K E E++K +Y++ K+V +++Y+ KA+ D
Sbjct: 115 QQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDAVAKGKETEKARERYD 168
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 31.6 bits (72), Expect = 1.8
Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 5/124 (4%)
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERE 153
E+ E K ++ ++ + ++ DEL+ + L E E E
Sbjct: 29 EEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEAT 88
Query: 154 LRKERLLEAERVKEAYKERVKD--VEQKRKRYRTRSRSRSPINKAKNEMDV---DEAHQR 208
+L E KEA +++ E + R R V Q
Sbjct: 89 AEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEAAAAPTAPPHVAAPVNGEQL 148
Query: 209 GEDD 212
DD
Sbjct: 149 EPDD 152
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 32.0 bits (72), Expect = 1.8
Identities = 37/280 (13%), Positives = 88/280 (31%), Gaps = 22/280 (7%)
Query: 66 RDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKE--YTAREIDE 123
R +K R + K Q +G ED + ++ + +++++ +
Sbjct: 219 EKRELRGGKKRRKKLKPKQPNGEESGEDDFQEDPEEEEQLPESKPEETEKRVSAFQVEGS 278
Query: 124 LKAKEADLRARLERKRYSNPL-----------REKEKIERELRKERLLEAERVKEAYKER 172
+LR +L++++ S PL ++E+ E + + E +EA
Sbjct: 279 TLISAENLRQQLKQEKTSWPLLWLQSCLIRAADDREEDECDQAVPLVPLTEENEEAM--E 336
Query: 173 VKDVEQKRKRYRTR-------SRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPES 225
+ ++ K R R P + ++ A GE++
Sbjct: 337 NEQFQRLLKALGLRPPRSGQEGFWRIPAKLSSTQLRRRAASLSGEEEEPEDELKDDVDGE 396
Query: 226 RSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSS 285
++ + + R E+ G+EE + + + +S
Sbjct: 397 QADESEHETLALRKNARQRKAGLASPEEEALGEEEQKAPPKKKQLNQKNKQQTGSGTNSD 456
Query: 286 QDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESER 325
++ + +E+ + D KR + + R
Sbjct: 457 EERDDTSLDEDRDLADDGGLPRIHKDKRAGASLTQSPLSR 496
Score = 30.1 bits (67), Expect = 6.4
Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 17/213 (7%)
Query: 122 DELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRK 181
+LK K+ + E +P E++ E + + +RV E + +
Sbjct: 231 KKLKPKQPNGEESGEDDFQEDPEEEEQLPESKPEETE----KRVSAFQVEGSTLISAENL 286
Query: 182 RYRTRS-RSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLT 240
R + + ++ P+ ++ + + A R ED+ + P E + + +E
Sbjct: 287 RQQLKQEKTSWPLLWLQSCL-IRAADDREEDECDQAVPLVPLTE-ENEEAMENE------ 338
Query: 241 DESRSPTPQRDEKPGTGQE----EGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEEN 296
R P +GQE S + + S + E + D E+
Sbjct: 339 QFQRLLKALGLRPPRSGQEGFWRIPAKLSSTQLRRRAASLSGEEEEPEDELKDDVDGEQA 398
Query: 297 DENEDKADKKEKKAKKRKKEDASPNESERDVSP 329
DE+E + K A++RK ASP E
Sbjct: 399 DESEHETLALRKNARQRKAGLASPEEEALGEEE 431
>gnl|CDD|234288 TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype
I-E/ECOLI. The CRISPR-associated protein Cas1 is
virtually universal to CRISPR systems. CRISPR, an
acronym for Clustered Regularly Interspaced Short
Palindromic Repeats, is prokaryotic immunity system for
foreign DNA, mostly from phage. CRISPR systems belong to
different subtypes, distinguished by both nature of the
repeats, the makeup of the cohort of associated Cas
proteins, and by molecular phylogeny within the more
universal Cas proteins such as this one. This model is
of type EXCEPTION and provides more specific information
than the EQUIVALOG model TIGR00287. It describes the
Cas1 protein particular to the ECOLI subtype of
CRISPR/Cas system.
Length = 268
Score = 31.5 bits (72), Expect = 1.8
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 129 ADLRARLE------RKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKD--VEQKR 180
AD R RLE R+ L + +E+ LR LE RV+EAY+ + V K
Sbjct: 103 ADPRRRLEVARRMYAMRFGEELPPRLTLEQ-LRG---LEGARVREAYRLLAEKYGVPWKG 158
Query: 181 KRY-RTRSRSRSPINKA 196
+RY + P+N+A
Sbjct: 159 RRYDPGDWEAGDPVNRA 175
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 32.0 bits (73), Expect = 1.8
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 111 QKSKEYTARE--IDELKAKEADLRARLERKRY-SNPLREK-EKIERELRKERLLE----- 161
QK +E T R EL+ E L R+ R EKI ++ LE
Sbjct: 279 QKKEEQTLRTRIEKELEKAEKSLEKLKGREFNCEKDARIAAEKILKDYSSVEFLEVDFKS 338
Query: 162 AERVKEAYKERVKDVEQKRKRYR 184
++ +EA + R + E+ + YR
Sbjct: 339 KKKREEAKRGRPRKDEELKTYYR 361
>gnl|CDD|184543 PRK14157, PRK14157, heat shock protein GrpE; Provisional.
Length = 227
Score = 31.5 bits (71), Expect = 1.8
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 241 DESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESS----------QDGSEDSSQDSSS 290
D+ + P D+ GQ +G+ S+ E+ D + +++ +
Sbjct: 7 DDYLNDLPDADDLEAQGQAAQASSGADASAESGEQQDSAAQADANAGADAAPAAAEGEAK 66
Query: 291 SDEEENDENEDKADKKEKKAKKRKKEDA 318
+ E+ E + +D + KKE A
Sbjct: 67 AAAEKTGEAQSDSDDTLTPLGQAKKEAA 94
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 31.9 bits (72), Expect = 1.8
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 94 RRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERE 153
R + D + + + AQ ++E A+ E +A+EA L+A R+ L +EK
Sbjct: 299 RENADLQRQKLEAEQAAQAAQEAKAKAEKEAQAREAKLQAECARQ---TQLALEEKA--A 353
Query: 154 LRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDG 213
LR ER + + + + + ++ EQ R R + KAK+ + + G
Sbjct: 354 LRAER----DNLAKELEAKKREAEQLRMELAIRISALDTCIKAKSLPAMPPSRPMGPPPN 409
Query: 214 ARTPPGPAAPESRSRQDLEA 233
P PA+ E ++ LE+
Sbjct: 410 PP-PIDPASLEEFKKKILES 428
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 32.1 bits (73), Expect = 2.0
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 89 HKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKE 148
+ SHR+ D + R+E +E+ + Y + I EL+A+ LRA L + E E
Sbjct: 4 YSSHRKVAADGEEREESLLQESASKEAYYLQRILELQAELKQLRAELSNVQ-----AENE 58
Query: 149 KIERELRKER----LLEAER------VKEAYKER 172
++ ++ + +LE +R +KE YK R
Sbjct: 59 RLSSLSQELKEENEMLELQRGRLRDEIKE-YKFR 91
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 31.2 bits (71), Expect = 2.0
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 106 KAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERV 165
+A E + K EI E K K+A++ ++ SN E R+E L + V
Sbjct: 27 EAVEEAEKK---IEEIYEKKEKQAEMEKQII---ISNAKNEARLKVLNAREELL---DSV 77
Query: 166 KEAYKERVKDVEQKRKRYRT 185
E KER+ ++ + + Y+
Sbjct: 78 FEEAKERLANLSEDKDEYKD 97
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 32.0 bits (72), Expect = 2.0
Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 20/204 (9%)
Query: 2 SDEDTPDSLEIKPPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSR 61
+ D + P+ + K + S H ++ S +Q KS R +
Sbjct: 524 AKSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESEFEELKKKWSSLAQLKS--RFQ 581
Query: 62 HRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHR---------DERKAREAQK 112
D +E +D K + D + + +E + R + + +
Sbjct: 582 KDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYET 641
Query: 113 SKEYTAREIDELKAK-EADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKE 171
+E AR+ +EL+ E + R E+K EK KIE +L+ R ++
Sbjct: 642 EREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINR--------SEFET 693
Query: 172 RVKDVEQKRKRYRTRSRSRSPINK 195
V + + YR R ++
Sbjct: 694 MVPESRVVIEGYRAGRYVRIVLSH 717
>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR. This region is found
to the N-terminus of the pfam00170 transcription factor
domain. It is between 150 and 200 amino acids in length.
The N-terminal half is rather rich in proline residues
and has been termed the PRD (proline rich domain),
whereas the C-terminal half is more polar and has been
called the MFMR (multifunctional mosaic region). It has
been suggested that this family is composed of three
sub-families called A, B and C, classified according to
motif composition. It has been suggested that some of
these motifs may be involved in mediating
protein-protein interactions. The MFMR region contains a
nuclear localisation signal in bZIP opaque and GBF-2.
The MFMR also contains a transregulatory activity in
TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention
signals.
Length = 189
Score = 31.0 bits (70), Expect = 2.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 264 AGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENED 301
+G A S+ + SSQ S +S D SS + N +N
Sbjct: 154 SGKASGSSANGGSSQ--SSESGSDGSSEGSDGNSQNAS 189
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 31.5 bits (71), Expect = 2.0
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 259 EEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDA 318
E+ + A A+ +EE + E+S DEE ++ + +++ + ++ + E +
Sbjct: 162 EDNDEAPPAQPDVDNEEEERL--EESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGS 219
Query: 319 SPNESERDVSPHVIMDQDVDMEIELE 344
E D I + + E E
Sbjct: 220 DDGEDVVDYEGERIDKKQGEEEEMEE 245
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 31.9 bits (73), Expect = 2.1
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 244 RSPTPQRDEKPG------TGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEEND 297
R P+P +K +EE ++ S + Q+GS + +D S EE+ D
Sbjct: 216 RIPSPFFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTE--EDPSLFSEEKED 273
Query: 298 ENEDKADKKEKKAKKRKKED 317
++ + K + K++K E+
Sbjct: 274 PDKTEDLDKLEILKEKKDEE 293
>gnl|CDD|234773 PRK00461, rpmC, 50S ribosomal protein L29; Reviewed.
Length = 87
Score = 29.3 bits (66), Expect = 2.2
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 112 KSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIER--ELRKERLLEAERVKEAY 169
KE + ++EL+ +L+A L R+ N ++ + E+RK + R+
Sbjct: 1 LFKELRKKSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRK----DIARILTIL 56
Query: 170 KERVKDVEQKRKRYRTRSR 188
ER + ++ K + ++
Sbjct: 57 NERELEEKENNKEPKKNTK 75
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 30.3 bits (69), Expect = 2.2
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 20/98 (20%)
Query: 113 SKEYTA--REIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLL---EAERVKE 167
K+Y A +E +ELK + L +LE E +++E L+K ++ AE VK
Sbjct: 31 IKDYEALYKENEELKEEIERLEEKLE---------EYKELEETLQKTLVVAQETAEEVKA 81
Query: 168 -AYKER---VKDVEQKRKRYRTRSRSRSPINKAKNEMD 201
A KE +K+ E K +R + K E D
Sbjct: 82 NAQKEAELIIKEAEAKAERIVNDANEE--AKKLATEYD 117
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 31.8 bits (72), Expect = 2.2
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 13 KPPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDER---DRR 69
+ S+Q K +++ DK S + S S S +K+S+ + + +
Sbjct: 17 RTTVESSQ--KRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEV 74
Query: 70 HHHKEKERDRNKSD--QSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYT-AREIDELKA 126
E E ++N+SD +S K + D+ R+ + +E REI+EL
Sbjct: 75 EAEDEIEVEQNQSDVLKSSSIVKEESISTDMDGIDDDSLDRKLKLERENLRKREIEELAE 134
Query: 127 K 127
+
Sbjct: 135 E 135
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 31.7 bits (72), Expect = 2.3
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 96 DEDRKHRDERKARE------------AQKSKEYTAREIDELKAKEADLRARLERKRYSNP 143
DE+R E A++ A K+K + R+I E K A RA E +
Sbjct: 286 DEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKV-- 343
Query: 144 LREKEKIERELRKERLLEAERVKEAY 169
E+E IE+ L+KER A R K Y
Sbjct: 344 --EREDIEKALKKERKRRAPRPKHLY 367
>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Janus kinase 1. Protein
Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak1 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak1 is widely expressed in
many tissues. Many cytokines are dependent on Jak1 for
signaling, including those that use the shared receptor
subunits common gamma chain (IL-2, IL-4, IL-7, IL-9,
IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M,
G-CSF, and IFNs, among others). The many varied
interactions of Jak1 and its ubiquitous expression
suggest many biological roles. Jak1 is important in
neurological development, as well as in lymphoid
development and function. It also plays a role in the
pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 262
Score = 31.1 bits (70), Expect = 2.4
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 473 QQLLNAVAHLHDNWILHRDLKTSNLLLSHRGILKVGDFGLAREYGSPLKHYTP-IVVTLW 531
+QL +A+++L D ++H ++ T N+LL+ GI E G +K P I +T+
Sbjct: 112 KQLASALSYLEDKDLVHGNVCTKNILLAREGI--------DGECGPFIKLSDPGIPITVL 163
Query: 532 YR----------SPELLLGCKEYSTPIDMWSVGCIFAE 559
R +PE + K S D WS G E
Sbjct: 164 SRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWE 201
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 31.6 bits (72), Expect = 2.5
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 105 RKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAER 164
+K ++ + +K R++ ELK A + + + E+I EL +E LL++++
Sbjct: 370 KKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKK 429
Query: 165 VK 166
K
Sbjct: 430 KK 431
>gnl|CDD|147580 pfam05474, Semenogelin, Semenogelin. This family consists of
several mammalian semenogelin (I and II) proteins.
Freshly ejaculated human semen has the appearance of a
loose gel in which the predominant structural protein
components are the seminal vesicle secreted semenogelins
(Sg).
Length = 450
Score = 31.6 bits (71), Expect = 2.6
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 26 HRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSD-- 83
H H D + +T S+Q ++Q+K+ +H +HK++ R+ KS
Sbjct: 67 HTFHVDVNDHDQTR----KSKQYDLNAQNKTTKSEQHLGGHQELFNHKQEGREHGKSKGD 122
Query: 84 ------QSDGGHKSHRRRD--EDRKHRDERKAREAQKS 113
GGH H ++ +DR + K + +Q S
Sbjct: 123 FHMVVIHHKGGHAHHGTQNPSQDRGNSTSGKGKSSQDS 160
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 30.6 bits (69), Expect = 2.6
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 27 RSHKDKHSSHRTHGSSSSSQQDKSSSQH---KSHHRSRHRDERDRRHHHKEKERDRNK 81
+ HK KH HRT S K H + +H D+++R+ KEK++ + +
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 30.8 bits (69), Expect = 2.7
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 278 QDGSEDSSQDSSSSDEE-ENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQD 336
Q+ E + Q+ +E E + E+K D++E + ++ ++ + E + D S H I++QD
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184
Query: 337 VDMEIELEKDT 347
+ E E + D
Sbjct: 185 -ESETESDDDK 194
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.4 bits (71), Expect = 2.8
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 210 EDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAES 269
E +TP A S Q + + + R P + S S
Sbjct: 295 EIKSWQTPLQTPAMYSSDYQAPKPEPIYTWEELLRERFPSDL----FAISSLPDSDSEAS 350
Query: 270 SAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKED 317
+G + + SS ++E++ + ED+ D EK+ K+R++ED
Sbjct: 351 DSGPTRKRKRRRVPPLPEYSSDEDEDDSD-EDEVD-YEKERKRRREED 396
>gnl|CDD|162743 TIGR02172, Fb_sc_TIGR02172, Fibrobacter succinogenes paralogous
family TIGR02172. This model describes a paralogous
family of five proteins, likely to be enzymes, in the
rumen bacterium Fibrobacter succinogenes S85. Members
show homology to proteins described by pfam01636, a
phosphotransferase enzyme family associated with
resistance to aminoglycoside antibiotics. However,
members of this family score below the current trusted
and noise cutoffs for pfam01636.
Length = 226
Score = 30.9 bits (70), Expect = 2.9
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 433 SNMDKIFIVMDYVEHDMKSLMETMRSKKQV---------FIPGEVKCLMQQLLNAVAHLH 483
+ KIF M H K T +S K+ F+P + K + + V
Sbjct: 94 EEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTS 153
Query: 484 DNWILHRDLKTSNLLLSHRGIL--KVGDFGLAREYGSPL 520
LH D + NL+ S +G +GDFG YG+PL
Sbjct: 154 T--CLHGDFQIGNLITSGKGTYWIDLGDFG----YGNPL 186
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 31.3 bits (71), Expect = 2.9
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 78 DRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLE- 136
+ + + + + E + E+ +E +K K+ +E++ELK +E + + LE
Sbjct: 509 FKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEK 568
Query: 137 --RKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRK 181
++ +E E I REL KE+ + + ++ ++ VK E K+K
Sbjct: 569 EAQEALKALKKEVESIIREL-KEKKIHKAKEIKSIEDLVKLKETKQK 614
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 31.5 bits (71), Expect = 2.9
Identities = 41/275 (14%), Positives = 94/275 (34%), Gaps = 12/275 (4%)
Query: 46 QQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDER 105
Q+ K + + R + +E + + KE++ + ++ K ++E K E
Sbjct: 744 QKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLK-AQEE 802
Query: 106 KAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERV 165
+ R ++ + A ++E + E + L KE+ + E K E ER+
Sbjct: 803 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE--KLAEEELERL 860
Query: 166 KEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPES 225
+E + E K + E E + E++ + E
Sbjct: 861 EEEITKEELLQELLLKEEELE-EQKLKDELESKEEKEKEEKKELEEESQKDN----LLEE 915
Query: 226 RSRQDLE--AAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESS--QDGS 281
+ + E A ++L P E+ ++E + E + + G+
Sbjct: 916 KENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGN 975
Query: 282 EDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKE 316
+ + ++EE ++ ++ ++ KK
Sbjct: 976 VNLMAIAEFEEKEERYNKDELKKERLEEEKKELLR 1010
Score = 29.9 bits (67), Expect = 8.9
Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 20/226 (8%)
Query: 96 DEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELR 155
+K R ++ E + E + + + Y + KEK+E E
Sbjct: 169 KRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEY---YQLKEKLELEEE 225
Query: 156 KERL-----LEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGE 210
L ER+ + + E+ + + + + E +E ++ +
Sbjct: 226 NLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQ 285
Query: 211 DDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESS 270
++ + + + EK E +
Sbjct: 286 EEEL------KLLAKEEEELKSELLKLERRKVDDEEKLKESEK------ELKKLEKELKK 333
Query: 271 AGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKE 316
E + + ++EEE ++ E +K E+ ++ +
Sbjct: 334 EKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAK 379
>gnl|CDD|217337 pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase
proteins are necessary for efficient DNA transposition.
This family includes IS66 from Agrobacterium
tumefaciens.
Length = 277
Score = 31.0 bits (71), Expect = 3.1
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 99 RKHRDERKAREAQKSKEYTAREIDELKAKEADLR------ARLERKRYSNPLREKEKIER 152
RK D K+ + ++ E R I EL A E + R R+ YS PL + +
Sbjct: 151 RKFVDAVKSDPSPRAAEALRR-IGELYAIEREARGLPPEERLALRQEYSRPLLDALEAWL 209
Query: 153 ELRKERLLEAERVKEA 168
E + +L ++ +A
Sbjct: 210 EAQLPGVLPKSKLGKA 225
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 31.1 bits (70), Expect = 3.1
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 271 AGSEESSQDGSEDSSQDSSSSDEEENDENE-DKADKKEKKAKKRKKEDASPNESERDVSP 329
SS GS+ S++ +EEE +E E D +++++ +K S + +
Sbjct: 214 TPPNSSSSSGSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKASTSESITVPSRRH 273
Query: 330 H 330
H
Sbjct: 274 H 274
>gnl|CDD|219061 pfam06495, Transformer, Fruit fly transformer protein. This family
consists of transformer proteins from several Drosophila
species and also from Ceratitis capitata (Mediterranean
fruit fly). The transformer locus (tra) produces an RNA
processing protein that alternatively splices the
doublesex pre-mRNA in the sex determination hierarchy of
Drosophila melanogaster.
Length = 182
Score = 30.4 bits (68), Expect = 3.2
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 27 RSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSD 86
+ K S R ++S + ++ S+ +S S R+ RRH + + R+R+ S
Sbjct: 38 NLRQRKTQSTRP---TTSHRGRRTRSRSRSQ--SAERNSCQRRHRSRSRSRNRSDSRHRS 92
Query: 87 GGHKSHRRRDEDRKHRDERKAR 108
RRR R R R R
Sbjct: 93 TSSTERRRRSRSR-SRYSRTPR 113
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 30.6 bits (69), Expect = 3.2
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 280 GSEDSSQDSSS--SDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDV 337
G + +++ S +EN + + K DKK+K K + ES+ D H + +
Sbjct: 71 GYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPKSLLLNFVTVEESKPDDEVHEQKSETL 130
Query: 338 DMEIELEKDTLPPYLP 353
+ IELE+ ++ YLP
Sbjct: 131 SLPIELEEQSMGRYLP 146
>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.
Length = 156
Score = 30.1 bits (69), Expect = 3.2
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAE 163
ER +E + ++ ++ E +A+ A++ + +KR +I E + E EA
Sbjct: 48 ERAKKELELAQAKYEAQLAEARAEAAEIIEQ-AKKR-------AAQIIEEAKAEAEAEAA 99
Query: 164 RVKEAYKERVKDVEQKRKR 182
R+K + ++EQ+RKR
Sbjct: 100 RIKAQAQA---EIEQERKR 115
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 31.1 bits (70), Expect = 3.3
Identities = 18/88 (20%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 439 FIVMDYVEHDMKSLMETMRSKKQVFIPGEVKCLMQQLLNAVAHLHDNWILHRDLKTSNLL 498
FI+++ + + K + + ++ K + I K +M+ +L + ++H++ I H D+K N++
Sbjct: 103 FILLEKLVENTKEIFKRIKCKNKKLI----KNIMKDMLTTLEYIHEHGISHGDIKPENIM 158
Query: 499 LSHRGILKVGDFGLAREY---GSPLKHY 523
+ + D+G+A + G +++
Sbjct: 159 VDGNNRGYIIDYGIASHFIIHGKHIEYS 186
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 31.1 bits (70), Expect = 3.3
Identities = 64/268 (23%), Positives = 100/268 (37%), Gaps = 63/268 (23%)
Query: 107 AREAQKSKEYTA--REIDELKAKEADLRARLERKRYSNPLREKEKIERE-------LRKE 157
A EA+K + A RE+D L + ERK N ++K +I + LRKE
Sbjct: 329 ATEAEKQLQQYAESRELDALGLDDQ------ERKILMNFHQKKNEISFQQTNAMVTLRKE 382
Query: 158 RLLE-AERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGAR- 215
RL + E + +A + +V RY + P E DV + D +R
Sbjct: 383 RLAKLTEAITKASQPKVSQ------RYDDDNDIPFP---GPIEDDVQPRPMDDDPDDSRD 433
Query: 216 --TPPGPAAPE--------SRSRQDLEAAGLVVL------TDESRSPTPQRDEKPGTGQE 259
PPG P S S + +VL D+S+ P P++ GQ
Sbjct: 434 TTIPPGVVDPIDGESTEYSSYSDSFVGTNDDLVLFNLDEDDDDSK-PIPEQAAST-YGQT 491
Query: 260 EGELAGSAESSAGSEES----SQDGSEDSSQDSSSSDE---------------EENDENE 300
E G E GS + SQD + ++ + S +E DE E
Sbjct: 492 SRERQGIPEPPPGSHQPGNRASQDLNNNNQKQEDESTNPIGKTSLRYQELTPVQEEDEPE 551
Query: 301 DKADKKEKKAKKRKKEDASPNESERDVS 328
D+ D + + +D +++E+ V
Sbjct: 552 DQTDDDDSSLPPLESDDDPGSDNEQGVD 579
>gnl|CDD|234483 TIGR04150, pseudo_rSAM_GG, pseudo-rSAM protein, GG-Bacteroidales
system. Many peptide-modifying radical SAM enzymes have
two 4Fe4S-binding regions, an N-terminal one recognized
by Pfam radical SAM domain-defining model pfam04055 and
a C-terminal one recognized by TIGR04085. Members of
this protein family occur in cassettes with such a
radical SAM family (TIGR04148) and with a peptide
modification target (TIGR04149). Surprisingly, members
of this family show full-length homology to each other,
with several scoring at least borderline hits to both
pfam04055 and TIGR04085, and yet differ in the
presence/absence of a signature CX(3)CX(2)CX(9)C motif.
Instead, members are best-conserved in the
TIGR04085-like C-terminal region. Therefore, this
protein family is designated a pseudo-radical-SAM
protein, which likely works in partnership with a
TIGR04148 family protein.
Length = 407
Score = 31.1 bits (71), Expect = 3.4
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 404 FPITSLREINTL----LKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHDMKSLMETMRSK 459
F +TS E K N V +R G N+D F +YV D + ++ T +K
Sbjct: 258 FIVTSENEYEEAEKIIEKYNIDN-VQIRPFYTGDNID--FFE-EYVFLDKEDILSTKLTK 313
Query: 460 KQVFIPGEVKCLMQQLLN 477
K +F Q LN
Sbjct: 314 KDIF--------AHQKLN 323
>gnl|CDD|227448 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit
[Transcription].
Length = 507
Score = 31.2 bits (70), Expect = 3.4
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 11/150 (7%)
Query: 64 DERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDE 123
D DR + E ++ + + + +D +K RD A+ + +T E+ +
Sbjct: 179 DSLDR---NFSSETSTSREADENENYVISKVKDIPKKVRDGESAKYFIDEENFTMAELCK 235
Query: 124 LKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRY 183
+ K EK + + L E +++ + + + + +R R
Sbjct: 236 PNFPIQISENFEKSKMAKKAKLEKRRHVKFLEGSNTHEMDQLLKHFLDNSNFRQDRRSRK 295
Query: 184 RTRS-------RSRSPINKAKN-EMDVDEA 205
+ S ++ I KN + VDEA
Sbjct: 296 KKASASRDISDQNAEEILMIKNGHIVVDEA 325
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 30.5 bits (69), Expect = 3.4
Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Query: 90 KSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEK 149
+ + ++D R++R+ Q+ E E E+K ++ + E+++ ++K++
Sbjct: 71 DQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Query: 150 IERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRG 209
I EL L A + +K++ K +E + ++ + R K E +
Sbjct: 131 IIDELETSN-LPANVIIAQHKKQSKQLESQVEKLERKKRVTFSTGIKKGEHISFVPVIKV 189
Query: 210 EDD 212
E+
Sbjct: 190 EEA 192
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 30.6 bits (69), Expect = 3.4
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIER 152
+ E+ K K E QK KE +E++EL+A+ +++ RL+R N E
Sbjct: 134 KEDYEELKE----KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE------ 183
Query: 153 ELRKERLLEAERVKEAYKERVKDVE 177
E+ K+ E +K+ + E VE
Sbjct: 184 EMLKKLPGEVYDLKKRWDELEPGVE 208
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 31.1 bits (70), Expect = 3.5
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 23/124 (18%)
Query: 255 GTGQEEGELAGSAESSAGSEESSQDGSEDSSQDS----------SSSDEEENDEN----- 299
G + + E+ +S+ + +QD S+ D E NDE
Sbjct: 55 GGPYDAENVFDDVETKHSRNQSTMASHLNDTQDVGIHARHISSVSTVDSELNDEYGNPIW 114
Query: 300 EDKADKKEKKAKKRKKEDASPNESERDVSPHVIMD--------QDVDMEIELEKDTLPPY 351
+++ + + K K+KK + + P M+ + + I + ++ L PY
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKPSADAYEPLSRVIPIPRNKLTPY 174
Query: 352 LPAI 355
I
Sbjct: 175 RAVI 178
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 31.2 bits (70), Expect = 3.5
Identities = 60/348 (17%), Positives = 115/348 (33%), Gaps = 30/348 (8%)
Query: 2 SDEDTPDSLEIKPPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSR 61
D + S E + + TQ HK+ + +HG + ++ + R
Sbjct: 422 EDLENEKSEEARALERMTQRHKNTSSWTRKM-LERASHGEGTREAVNE---------QIR 471
Query: 62 HRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRD---EDRKHRDERKAREAQK-SKEYT 117
DE +R H KE + S+ SD + ++ + E ++ +E K K ++ +
Sbjct: 472 KGDELMQRIHGKEIMDGEDVSEFSDSDYDTNEQVSTAFEKIRNEEELKGVLGMKFMRDAS 531
Query: 118 AREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVE 177
R++ K ADL N E+ + + A + V+
Sbjct: 532 NRQMAASKISVADLVK------VENGDDIDVGELDEVGGD-AIYANAGRREVFPVVEQRR 584
Query: 178 QKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLV 237
+ R R +P + MD Q+ +GA P L+
Sbjct: 585 KLAPRKRKEDFV-TPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATENFNPWLDRKMRR 643
Query: 238 VLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEEND 297
+ + ++ R +K + E + E+ GSE+ G D +++E
Sbjct: 644 IKRIKKKAYRRIRRDKRLKKKMPEEEN-TQENHLGSEKKRHGGVPDILLKEIEVEDDEKT 702
Query: 298 ENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEK 345
+E E+ +++ ++ DV E E EK
Sbjct: 703 PILSPGGDEE-------VEEGLSIKTQEELVALAFAGDDVVAEFEEEK 743
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 31.1 bits (71), Expect = 3.6
Identities = 47/292 (16%), Positives = 102/292 (34%), Gaps = 33/292 (11%)
Query: 141 SNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEM 200
L +E+ +++L+K + +E + +E K+K + +
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKK-----TPEQIDQVLIFLSG 61
Query: 201 DVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEE 260
V + E D + AA + ++ + L ++ +K
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Query: 261 GELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDE--NEDKADKKEKKAKKRKKEDA 318
++ ++ ++ D +D D DE+++++ ++D D+ E+K + ++ E
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181
Query: 319 SPNESERDVSPHVIMDQDVDMEIELEK--DTLPPYLPAIQGCRSVEEFKCLN-------- 368
S ++ + + +L D + YL + + + K LN
Sbjct: 182 SDDDDFVWDEDDSEALRQARKDAKLTATADPVKAYL------KQIGKVKLLNAEEEVELA 235
Query: 369 -RIEEGTYGVVYRAK-DKRTDEIVALKRLKMEKEKEGFPITSLREINTLLKA 418
RIE G Y A+ +K E+ + K R N LL+A
Sbjct: 236 KRIEAGLYAEELLAEGEKLDPELRRDLQWIGRDGK--------RAKNHLLEA 279
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 31.0 bits (70), Expect = 3.7
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 63 RDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREID 122
R+ R + +EKE++ + + D D DE E + D
Sbjct: 155 RELRQKIREEREKEKEEQPMKPAFKPERWMGGPDSDE---DENPLDEEAPDMTPETSKQD 211
Query: 123 ELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLE 161
+ + + A + RL +E+ R+LRKE+ LE
Sbjct: 212 QKEERRAAVERRLAELVEMINWNLEERR-RDLRKEQELE 249
Score = 29.8 bits (67), Expect = 7.3
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 4 EDTPDSLEIKPPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHH----- 58
E+ P KP + + D+ + T +S Q+++ + +
Sbjct: 170 EEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVERRLAELVE 229
Query: 59 RSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTA 118
E RR KE+E + N SD + D E+ + EY
Sbjct: 230 MINWNLEERRRDLRKEQELEENVERDSD------DEDEHGEDSEDGETKPESYITSEYIE 283
Query: 119 R--EIDELKAKE 128
R EI ++K +
Sbjct: 284 RISEIRKMKDER 295
Score = 29.5 bits (66), Expect = 9.4
Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Query: 173 VKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPE---SRSRQ 229
V+++ QK + R + + P+ A + + D P AP+ S+Q
Sbjct: 154 VRELRQKIREEREKEKEEQPMKPAFKP---ERWMGGPDSDEDENPLDEEAPDMTPETSKQ 210
Query: 230 DLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSS 289
D + + E R + +L E E S D E
Sbjct: 211 DQKEERRAAV--ERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDE---HGED 265
Query: 290 SSDEEENDENEDKADKKEKKAKKRKKED 317
S D E E+ ++ E+ ++ RK +D
Sbjct: 266 SEDGETKPESYITSEYIERISEIRKMKD 293
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 30.7 bits (70), Expect = 3.8
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 123 ELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKR 182
E+ K R E K + E+ +E +E+ E ++ + K E++RK
Sbjct: 256 EVLRKVDKTREEEEEKIL----KAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKL 311
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 31.1 bits (70), Expect = 3.8
Identities = 17/104 (16%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 240 TDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDEN 299
+S +K + +E+ E ++ +E + + ED +S+ D++++ +
Sbjct: 253 LGKSLPSLMSPRKKTASFKEQVVTRTFPERTSDDDEDAIETEEDDVDESAIEDDDDDSDW 312
Query: 300 EDKADKKEKKAKKRK----KEDASPNESERDVSPHVIMDQDVDM 339
ED ++ + + K + D+ PN + R +++ Q+
Sbjct: 313 EDSVEESGRSSVDEKTMFQRVDSKPNLTSRRSLLTLMLHQNDRA 356
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 31.3 bits (71), Expect = 3.8
Identities = 20/109 (18%), Positives = 30/109 (27%), Gaps = 4/109 (3%)
Query: 186 RSRSRSPINKAKNEMDVDEAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRS 245
S + + +E E R P S S
Sbjct: 230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSS 289
Query: 246 PTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEE 294
+R P A S+ ++ S SS++ SS S+SS E
Sbjct: 290 SPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE----SSSSSTSSSSE 334
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the
only known eukaryotic selenoprotein that contains
multiple selenocysteine (Sec) residues, and accounts for
more than 50% of the selenium content of rat and human
plasma. It is thought to be glycosylated. SelP may have
antioxidant properties. It can attach to epithelial
cells, and may protect vascular endothelial cells
against peroxynitrite toxicity. The high selenium
content of SelP suggests that it may be involved in
selenium intercellular transport or storage. The
promoter structure of bovine SelP suggest that it may be
involved in countering heavy metal intoxication, and may
also have a developmental function. The N-terminal
region of SelP can exist independently of the C terminal
region. Zebrafish selenoprotein Pb lacks the C terminal
Sec-rich region, and a protein encoded by the rat SelP
gene and lacking this region has also been reported.
N-terminal region contains a conserved SecxxCys motif,
which is similar to the CysxxCys found in thioredoxins.
It is speculated that the N terminal region may adopt a
thioredoxin fold and catalyze redox reactions. The
N-terminal region also contains a His-rich region, which
is thought to mediate heparin binding. Binding to
heparan proteoglycans could account for the membrane
binding properties of SelP. The function of the
bacterial members of this family is uncharcterised.
Length = 238
Score = 30.6 bits (69), Expect = 3.9
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 13/64 (20%)
Query: 13 KPPQASTQLHKSHHRSHKD--------KHSSHRTHGSSSSSQQDKSSSQ-----HKSHHR 59
KP +A + HH SH + H H +S S Q + HH
Sbjct: 175 KPVEAEPRQDHPHHHSHHEHQGHAHHHPHGHHHPGSNSHSESQQPDPDKPTEPPSGLHHH 234
Query: 60 SRHR 63
HR
Sbjct: 235 HNHR 238
>gnl|CDD|240067 cd04716, BAH_plantDCM_I, BAH, or Bromo Adjacent Homology domain,
first copy present in DNA
(Cytosine-5)-methyltransferases (DCM) from plants. DNA
methylation, or the covalent addition of a methyl group
to cytosine within the context of the CpG dinucleotide,
has profound effects on the genome. These effects
include transcriptional repression via inhibition of
transcription factor binding, the recruitment of
methyl-binding proteins and their associated chromatin
remodeling factors, X chromosome inactivation,
imprinting, and the suppression of parasitic DNA
sequences. DNA methylation is also essential for proper
embryonic development and is an important player in both
DNA repair and genome stability. BAH domains are found
in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 122
Score = 29.3 bits (66), Expect = 3.9
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 358 CRSVEEFKCLNRIEEGTYGVVYRAKD---KRTDEIVALKRLKMEKEKEGFPITSLREINT 414
C+ E F+ + T YRA+D +R KR+ + K P+ L
Sbjct: 23 CKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISKVK 82
Query: 415 LLKAQHPNIVTVREIVVGSNMDKIFIVMDYVEHD 448
+L+ PN+ T R+ D + + V +
Sbjct: 83 ILQVP-PNVGTKRKKPNSEKCDYYYDMEYCVPYS 115
>gnl|CDD|213701 TIGR02336, TIGR02336, 1,3-beta-galactosyl-N-acetylhexosamine
phosphorylase. Members of this family are found in
phylogenetically diverse bacteria, including Clostridium
perfringens (in the Firmicutes), Bifidobacterium longum
and Propionibacterium acnes (in the Actinobacteria), and
Vibrio vulnificus (in the Proteobacteria), most of which
occur as mammalian pathogens or commensals. The nominal
activity, 1,3-beta-galactosyl-N-acetylhexosamine
phosphorylase (EC 2.4.1.211), varies somewhat from
instance to instance in relative rates for closely
related substrates [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 719
Score = 31.0 bits (70), Expect = 3.9
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 48/190 (25%)
Query: 839 PSTKLRQARSMPHWVPNVRRAGSQPPEYITTLVQNQVKQGMEMVKLLREAEQNGFTAEDL 898
P K + R +P++ P+V G+ P V +G++ + R A L
Sbjct: 349 PGVKYTEGRFLPYFFPDVFYEGNDP-----------VIEGLDNWRKARRAI--------L 389
Query: 899 TIALSHCGDGPPVTWLINNWRHMIDTVVTLATNYG--HERS--------ENNVGTLSA-- 946
L G G ++ L + +DTV +A + H+R+ V L++
Sbjct: 390 RSPLDRIGYGGYLS-LAAKFPKFVDTVTHIANEFREIHDRTGGVAAEGLPLKVAVLNSWG 448
Query: 947 -------VEARDALRLHNGNVWAAVTEC-----VETRQKKFNDLMSRGNFTREDIVTVLT 994
+ AL + + EC VE F+D++ G DI ++
Sbjct: 449 KMRSWMAFQVAHALPYKQTYSYYGILECLSGMPVEVEFISFDDILEHG--IDSDIDVII- 505
Query: 995 ANHGNVESAY 1004
N G+ ++A+
Sbjct: 506 -NGGDADTAW 514
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 30.8 bits (70), Expect = 4.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 274 EESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKK 309
E++ ++ ED +S DEE+ DE E++ D + K
Sbjct: 284 EKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 28.4 bits (64), Expect = 4.2
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 73 KEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLR 132
K+KE +NK+++ +++ DR R+ K + ++S + E +LK E DL
Sbjct: 15 KKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLKKLEKDLD 74
Query: 133 A 133
A
Sbjct: 75 A 75
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 30.4 bits (69), Expect = 4.2
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 92 HRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIE 151
DE ++ +E + + + +EL K + + +E+ + + E+ +
Sbjct: 51 EEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQ-----MQIEREQ 105
Query: 152 REL--RKERLLEAERVKEAYKE 171
E ERL+E + E Y+E
Sbjct: 106 EEWEEELERLIEEAK-AEGYEE 126
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 29.9 bits (68), Expect = 4.2
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 89 HKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKE 148
K+++ D+ R+ E + E K + E +ELK +++RL+ + +
Sbjct: 51 RKNYKFLDDYREK--EIEELEKALKKTKDSEEKEELKRTLQSMKSRLKT-------LKNK 101
Query: 149 KIERELRKE-RLLEAERVKEAY------KERVKDVEQKRK 181
ERE+ KE + E E +KE K +K + K+K
Sbjct: 102 DREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKK 141
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 31.0 bits (70), Expect = 4.2
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 89 HKSHRRRDED---RKHRDERKAREAQKSKEY----TAREIDELKAKEADLRARLER---- 137
H + RR D R+ +R+ +++Y +RE+ EL E DL A +
Sbjct: 277 HANERRVHLDQALEFRRELYTSRQQLAAEQYRHVDMSRELAELNGAEGDLEADYQAASDH 336
Query: 138 -KRYSNPLREKEKIER-----ELRKERLLEAERVKEAYKERVKDVEQK 179
LR++EKIER E RL E V E ER ++ E +
Sbjct: 337 LNLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEAR 384
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 29.9 bits (67), Expect = 4.3
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 79 RNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERK 138
+ K Q + K+ +++ + E A ++S E + E + E + +++
Sbjct: 20 KVKEIQRNLTKKARLKKEYLKLLEKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKE 79
Query: 139 RYSNPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPI 193
RE+ + E R++ L + E K+ KER E++RK+ +++S P+
Sbjct: 80 IAKQRKREQREKELAKRQKELEKIELSKKKQKER----ERRRKKLTKKTKSGQPL 130
Score = 29.5 bits (66), Expect = 4.8
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 59 RSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTA 118
R+ + R ++ + K E++ + + K + EDRK ++K E ++ +
Sbjct: 26 RNLTKKARLKKEYLKLLEKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRK 85
Query: 119 REIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERL 159
RE E + A + LE+ S ++K+K ERE R+++L
Sbjct: 86 REQRE--KELAKRQKELEKIELS---KKKQK-ERERRRKKL 120
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 29.6 bits (67), Expect = 4.4
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 72 HKEKERDRNKSDQSDGGHKSH-RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEAD 130
+ N+ ++ + + +R E RK E+ R+ K+K+ A + E + +
Sbjct: 37 NSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMK 96
Query: 131 LRARLERKRYSNPLREKEKIERELRKE 157
A E++R EK+K E +L KE
Sbjct: 97 ALAEAEKERAEL---EKKKAEAKLMKE 120
>gnl|CDD|236356 PRK08944, motB, flagellar motor protein MotB; Reviewed.
Length = 302
Score = 30.4 bits (69), Expect = 4.4
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 235 GLVVLTDESR----SPTP----QRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQ 286
G ++ E R PTP + T Q AG ++S+ G+++ Q G + +
Sbjct: 71 GTSIIAQEFRPGRPEPTPIEVIMQQTIDMTQQTLEFQAGESDSAGGTQQ--QRGKQRGGE 128
Query: 287 DSSSSDEEENDENEDKADKKEKKAKKRKKE 316
S+ E+ E D +K A++ +KE
Sbjct: 129 ASAEVKAEKAAAQEQIEDLVKKLAQQLEKE 158
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 4.4
Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 60 SRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRD-----EDRKHRDERKAREAQKSK 114
R+E + R + + ++ R+ E+R +A E +
Sbjct: 313 EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL 372
Query: 115 EYTAREIDELKAKEADLRARLE--RKRYSNPLREKEKIERELRKERLLEAERVKEAYKER 172
E +++ + + +L +E R+R+ + + E + +E E + ++E E
Sbjct: 373 EEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE-DFLEELREERDELREREAEL 431
Query: 173 VKDVEQKRKRYR 184
+ R+R
Sbjct: 432 EATLRTARERVE 443
Score = 30.8 bits (70), Expect = 5.0
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 111 QKSKEYTAREIDELKAKEADLRARLER-----KRYSNPLREKEKIERELRK--ERLLEAE 163
+ E EI+ + + R + + + E E +E E+ E + E E
Sbjct: 213 SELAELDE-EIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE 271
Query: 164 RVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEA 205
R +E E V+D + E +D+A
Sbjct: 272 REREELAEEVRD------LRERLEELEEERDDLLAEAGLDDA 307
Score = 30.0 bits (68), Expect = 8.2
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 118 AREIDELKAKEADLRARLERKRYSNPLREKEKIEREL-RKERLLEAERVKEAYKERVKDV 176
I+E + + +L A LE E E++E L R E L+EAE E +ER +D+
Sbjct: 467 VETIEEDRERVEELEAELEDLE-----EEVEEVEERLERAEDLVEAEDRIERLEERREDL 521
Query: 177 EQ----KRKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDGAR 215
E+ +R+ + + + E++ + +R A
Sbjct: 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 30.9 bits (70), Expect = 4.5
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 94 RRDEDRKHRDERKAREAQKSKEYTA---------REIDELKAKEADLRARLERKRYSNPL 144
R DE R+ D A +K K Y +++ + + KE +L RL+ ++ L
Sbjct: 142 RPDEQRQLLD-TFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQ--L 198
Query: 145 REKEKIERELRKERLLEAERVKEAYKERVKDVEQ 178
E E+ + + ++ LEAE+ + + E+++++ Q
Sbjct: 199 EELEEADLQPGEDEALEAEQQRLSNLEKLRELSQ 232
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 31.0 bits (70), Expect = 4.6
Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 65 ERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDEL 124
H++++K R K + + + DE +RK + + E +++
Sbjct: 468 NHIINHYNEKKSRLEEKIREIE---IEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKI 524
Query: 125 KAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKE-RVKDVEQKRKRY 183
++ ADL E KI+ K++ + E +K YK +++D++ KR +
Sbjct: 525 ESARADL--------------EDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSW 570
Query: 184 RTRSRSRSPINKAKNEMDVDEAHQRGEDDGART 216
S I+ N +E ++ D +R
Sbjct: 571 LNALAVISLIDIETNRSRSNEIKKQLNDLESRL 603
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 30.9 bits (70), Expect = 4.6
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 259 EEGELAGSAESSAGSEESS-QDGSEDSSQDSSSSDEEENDENEDKADKKEK 308
E+ E EE +D E S++ S +E E D+ E K + +
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDG 432
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 30.7 bits (69), Expect = 4.7
Identities = 18/98 (18%), Positives = 35/98 (35%)
Query: 248 PQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKE 307
Q+ + +E + + S E+ S DS + +EEE DE+ + +
Sbjct: 75 NQKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDD 134
Query: 308 KKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEK 345
+ E S E D ++ ++ E E+
Sbjct: 135 EDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEE 172
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 31.0 bits (71), Expect = 4.7
Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 20/182 (10%)
Query: 153 ELRKERLLEAERVKEAYKE---RVK----DVEQKRKRYRTRSRSRSPINKAKNEMDVDEA 205
EL KE + ++ + E KE VK VE++ R R +AK E + A
Sbjct: 8 ELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEAR--KEEAKREAEEEAKAEAEEAAA 65
Query: 206 HQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAG 265
+ E+ A A E+ A DE+ P +P + + G
Sbjct: 66 AEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKG 125
Query: 266 SAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESER 325
+ + G + + + ++ +K+KK+ + R
Sbjct: 126 PKPKKKKPKRKAARGGK-----------RGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPR 174
Query: 326 DV 327
+V
Sbjct: 175 EV 176
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP);
Provisional.
Length = 291
Score = 30.5 bits (68), Expect = 4.7
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 210 EDDGARTPPGPAAPESRSR--QDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSA 267
+ DG ++PP E+ S+ QDL+ + PT + DE EEG+
Sbjct: 35 QQDGGKSPPESKGLETSSQGTQDLKGGAAGAKENSPPLPTEEDDEDVDDDSEEGD----D 90
Query: 268 ESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNES 323
+ +E + S Q+ + + + E + +K+ + E SP+ S
Sbjct: 91 DDGGAEDEEEEKVRGQSGQEGTVALGSGSTEKKLIGSEKQTELSISSAESISPSGS 146
>gnl|CDD|205086 pfam12808, Mto2_bdg, Micro-tubular organiser Mto1 C-term
Mto2-binding region. The C-terminal region of the
micro-tubular organiser protein 1 (mto1) is the binding
domain for attachment to Mto2p.The full-length Mto1
protein is required for microtubule nucleation from
non-spindle pole body MTOCs in fission yeast. The
interaction of Mto2p with this region of Mto1 is
critical for anchoring the cytokinetic actin ring to the
medial region of the cell and for proper coordination of
mitosis with cytokinesis.
Length = 52
Score = 27.4 bits (61), Expect = 5.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 90 KSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKR 139
R R+ +R+ + ER+AR +S ++EL A+ L+A LER R
Sbjct: 2 WLLRLRELERQLKAEREARLLDRSG--ARERLEELDAENRLLKAELERLR 49
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 29.3 bits (66), Expect = 5.0
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 64 DERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDE 123
D R+ + ++ N SD S+ H+ R+ ++ + + K+KE ++I
Sbjct: 37 DNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKI-- 94
Query: 124 LKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERVK 174
+AK+A+L ++ E ++ L +++ EL+++ L + KEA ++
Sbjct: 95 -EAKKAELESKYE--AFAKQLANQKQ---ELKEQLLSQMPEFKEALNAKLS 139
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 30.2 bits (68), Expect = 5.0
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 49 KSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAR 108
K + ++ R + DE +R K+KE+ R + Q + EDR+ + E K R
Sbjct: 142 KFEKECRALSRKKSDDEHRKRSG-KQKEKRRVEDSQ---------KHKEDRRKKQEEKRR 191
Query: 109 ---EAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEK 149
+ + + + + + + +R+++ +P R E
Sbjct: 192 NDEDKRPGGGGGSSGGQSGLSTKDEPP-KEKRQKHHDPERRLEP 234
Score = 29.5 bits (66), Expect = 7.2
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 31 DKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDG--- 87
+ S H S Q++K + +H+++R ++ K + + + G
Sbjct: 151 SRKKSDDEHRKRSGKQKEK----RRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSG 206
Query: 88 GHKSHRRRDEDRK------HRDERK 106
G +DE K H ER+
Sbjct: 207 GQSGLSTKDEPPKEKRQKHHDPERR 231
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 30.0 bits (68), Expect = 5.2
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 142 NPLREKEKIERELRKERLLEAERVKEAYKERVKDVEQKRK-RYR 184
PL + ++ + + RK+ L E E++K+ +E + +K YR
Sbjct: 86 EPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAKKADEEYR 129
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 29.1 bits (66), Expect = 5.2
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 104 ERKAREAQKSKEYTAREIDELKAKEADLRARLERK-------RYSNPLREKEKIERELR- 155
R EAQ+ E +++EL+ + R +L N ++ +
Sbjct: 4 ARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAIAQ 63
Query: 156 -KERLLEAERVKEAYKERVKDVEQKRKRYRT 185
++ L +AE+ E +E+ ++ Q+RK+
Sbjct: 64 QQQELEQAEKQVEQAREQWQEANQERKKLEK 94
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 30.5 bits (69), Expect = 5.3
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 71 HHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEAD 130
+ + ER +N+ + D R K R + A+ +KE A ++ + + +
Sbjct: 242 NQRMIERCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNE 301
Query: 131 LRARL 135
RAR+
Sbjct: 302 PRARM 306
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 30.4 bits (69), Expect = 5.3
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRY---SNPLREKEK 149
R ++ R + K QK + I+ELK A R+ L Y + EK
Sbjct: 71 ERLNQIRARISQLKEEIEQKRER-----IEELKRALAQRRSDLSSASYQLEKRRASQLEK 125
Query: 150 IERELRKER 158
++ E+++ R
Sbjct: 126 LQDEIKRTR 134
Score = 30.0 bits (68), Expect = 6.1
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 20/102 (19%)
Query: 123 ELKAKEADLRARLE--RKRYSNPLREKE-----------KIERELRKERLLEAERVKEAY 169
EL+ A L E +++ L K+E +KERL +++
Sbjct: 24 ELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERL---NQIRARI 80
Query: 170 KERVKDVEQKRKRYRTRSRS----RSPINKAKNEMDVDEAHQ 207
+ +++EQKR+R R+ RS ++ A +++ A Q
Sbjct: 81 SQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQ 122
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 30.5 bits (70), Expect = 5.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 272 GSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKR 313
E+ + GSE D +EEE DEN+D E + ++
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 29.8 bits (68), Expect = 8.7
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 271 AGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKE 316
S + DE+E +E ++ D + ++
Sbjct: 174 VDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
>gnl|CDD|237056 PRK12321, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1100
Score = 30.7 bits (70), Expect = 5.4
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 212 DGARTPPGPAAPESRSRQDLEAAGLVVLTDESRS-PTP 248
DG R PGPA SR R D+ G + T + R+ PT
Sbjct: 705 DGRRVAPGPAGSPSRGRSDVLPTGRNLFTVDPRAVPTR 742
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 30.4 bits (68), Expect = 5.4
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 224 ESRSRQDLEAAGLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSED 283
+S + D+E GL ++ Q++E+ EE E E E D ED
Sbjct: 81 KSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVV----EEEYDDDED 136
Query: 284 SSQDSSSSDEEENDENE 300
S +D + E DENE
Sbjct: 137 SEKDDEKESDAEGDENE 153
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 29.0 bits (65), Expect = 5.6
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 93 RRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEAD------LRARLERKRYSNPLRE 146
+ + + + R E + +EIDE A E L+ R+ S RE
Sbjct: 62 EEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLSVIETLKRIEARRDLSRAGRE 121
Query: 147 KEKIERELRK 156
+ E++ K
Sbjct: 122 LVEAEKKEEK 131
>gnl|CDD|165222 PHA02896, PHA02896, A-type inclusion like protein; Provisional.
Length = 616
Score = 30.4 bits (68), Expect = 5.6
Identities = 28/163 (17%), Positives = 64/163 (39%), Gaps = 23/163 (14%)
Query: 59 RSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDE-----RKAREAQKS 113
R D++ + H+ K + D +K +D D+ +KA + +
Sbjct: 420 RHGQMDDKYDKRDHRYKNNKYDIYDDESPRYKYKDDDYDDNDDNDDDHIIPKKANNLEDA 479
Query: 114 KEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKERV 173
K++ +D + + ++ + +R L+++++ + R R L AE+
Sbjct: 480 KDFEDEMMDAIADDDYTPKS-IRNRRNGYLLKDEDRYYYD-RGHRNLGAEK--------- 528
Query: 174 KDVEQK---RKRYRTRSRSRSPINKAKNEMDVDEAHQRGEDDG 213
D E+ + + +S ++ D D+A ++ E DG
Sbjct: 529 -DPEKPHPDKDEEYPEDKDKSDDDRLN---DADKAMRKLEADG 567
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 29.9 bits (67), Expect = 5.7
Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 13/122 (10%)
Query: 204 EAHQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTPQRDEK-----PGTGQ 258
E ++ + G P + R R+D E D R P P +
Sbjct: 110 EQYEECQKQGVEFVPACLRQKQRRREDQE--------DGVRQPGRTEKSGSDFWEPPSSD 161
Query: 259 EEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDA 318
E+ + + S E + Q+ D+ E D+ ++ + + +KR K+ +
Sbjct: 162 EDDSDSEDSMSDLYPPELFTLKNPGKEQNGDEDDDFETDDEDEMEVESPELQQKRSKKQS 221
Query: 319 SP 320
Sbjct: 222 GS 223
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 30.4 bits (68), Expect = 5.8
Identities = 21/154 (13%), Positives = 52/154 (33%)
Query: 39 HGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDED 98
G+ + + +++ + + E + K RD + + + +
Sbjct: 104 SGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPK 163
Query: 99 RKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKER 158
R +E ++T A+ A + A E ++ +E EL+K+R
Sbjct: 164 RGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKR 223
Query: 159 LLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSP 192
+ ++E + R ++ ++ R R
Sbjct: 224 EERRKVLEEEEQRRKQEEADRKSREEEEKRRLKE 257
>gnl|CDD|218209 pfam04678, DUF607, Protein of unknown function, DUF607. This
family represents a conserved region found in several
uncharacterized eukaryotic proteins.
Length = 180
Score = 29.6 bits (67), Expect = 5.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 157 ERLLEAERVKEAYKERVKDVEQKRKRYRTRSRSRSPINKAKNEMDVDEAHQR 208
RLL V E +R RKR S +P+ + K E+D AH+R
Sbjct: 43 HRLLPLPNVSEHQLDRT---HYLRKRLEALSEELAPLEEIKKEIDR-LAHRR 90
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 30.6 bits (69), Expect = 5.9
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 236 LVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEES-----SQDGSEDSSQDSSS 290
L V++ + S ++ EK + + E S + ++ SS
Sbjct: 19 LSVVSCSTTSSNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSS 78
Query: 291 SDEEENDENEDKADKKEKKAKKRKKEDASPN-ESERDVSPHVIMDQDVDMEIELEK 345
++ E+ + ++ EK + KK D P + +V + VD +L+K
Sbjct: 79 TNPEKKPDPSKNKEEIEKPKDEPKKPDKKPQADQPNNVHADQPNNNKVDF-SDLDK 133
>gnl|CDD|237478 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1747
Score = 30.5 bits (69), Expect = 6.0
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 63 RDERDRRHHHKEKERDRNKSDQSDGGHKSHRR----RDEDRKHRDERKAREAQKSKEYTA 118
R E +RR ++ NK D DG + R ++ DR ER+A +
Sbjct: 1654 RRETERRADEIVRKMAENKPDLPDGKTEQAVRDIAGQERDRAAISEREAALPESVLREPQ 1713
Query: 119 REIDELKAKEADLRARLERKRYSNPLREKEKIERELRKER 158
RE + ++ R L R+R + + + R+L+KE+
Sbjct: 1714 REREAVREVA---RENLLRER---LQQMERDMVRDLQKEK 1747
>gnl|CDD|222926 PHA02745, PHA02745, hypothetical protein; Provisional.
Length = 265
Score = 29.9 bits (67), Expect = 6.0
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 235 GLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEE 294
L+ E S G E E G ++ +E + ++ E
Sbjct: 48 KLLEDLFEDISGDLDIRTSTGDYVSEEEHFGRVDT----QEVDEFRGLNAKIRDKVLPIE 103
Query: 295 ENDENEDKADKKEKKAKKRKKE-----DASPNES 323
+N + + K +++ ++ + PN+S
Sbjct: 104 DNKHDNSETRNPLNKIRQQIRKFTLPPEYDPNDS 137
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 29.6 bits (67), Expect = 6.3
Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 64 DERDRRHHHKEKERDRNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDE 123
DE +++ + D + +R R + ++ +KS + + E
Sbjct: 130 DEEEQKSFDPAEYFDTTPELLDR---RENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKE 186
Query: 124 LKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERV-KEAYKERVKDVEQKRKR 182
LK R ER++ + ++ +++REL K+ + +++ K+ + V +++RKR
Sbjct: 187 LKE-------RKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 30.3 bits (68), Expect = 6.4
Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 13/238 (5%)
Query: 97 EDRKHRDERKAREAQKSK-EYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELR 155
E+ +R KSK E+ + + + + LERK + + +++R L
Sbjct: 52 EESMTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLE 111
Query: 156 KERLLEAERVKEA-YKERVKDVEQKRKRYRT---RSRSRSPINKAKNEMDVDEAHQRGED 211
E L+A E + + E++ K + + K + E+ R ++
Sbjct: 112 LEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKN 171
Query: 212 DGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTP-QRDEKPGTGQEEGELAGSAESS 270
D + D E L +E R + E ++ L SS
Sbjct: 172 DLSEM------QCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASS 225
Query: 271 AGSEESSQDGSED-SSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDV 327
A + + E+ + + + E + + E++ ++E+ + D
Sbjct: 226 ADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDN 283
>gnl|CDD|220634 pfam10220, DUF2146, Uncharacterized conserved protein (DUF2146).
This is a family of proteins conserved from plants to
humans. In Dictyostelium it is annotated as Mss11p but
this could not be confirmed. Mss11p is required for the
activation of pseudo-hyphal and invasive growth by
Ste12p in yeast.
Length = 890
Score = 30.2 bits (68), Expect = 6.5
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 249 QRDEKPGTGQEEGELAGSAESSAGSEESSQDGSED---SSQDSSSSDEEENDENEDKADK 305
Q +++ + + E S E +S + D S+ SS + EE+D +
Sbjct: 564 QAEDELADEETDQEQPESLEPQLQGSSTSPSDASDLNFSTASSSEASSEESDNYARPTSR 623
Query: 306 KEKKAKKRKKEDASPNESERDVSP 329
++ K P
Sbjct: 624 SGTDEEEASKTAREKRPQALARQP 647
>gnl|CDD|215579 PLN03106, TCP2, Protein TCP2; Provisional.
Length = 447
Score = 30.0 bits (67), Expect = 6.5
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 1 MSDEDTP-DSLEIKPPQASTQLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSS--SQHKSH 57
+SDE D E + ++ +H+S SS+S K S S +S
Sbjct: 146 LSDEKRTSDGTEQGFDSDDEEHENQTLTQNQAQHNSLSKSACSSTSDTSKGSGLSLSRSE 205
Query: 58 HRSRHRDERDRRHHHKEKE-RDRNKS 82
R + R ER R KEKE D N +
Sbjct: 206 LRDKAR-ERARERTAKEKEKEDHNHA 230
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 30.3 bits (69), Expect = 6.5
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 104 ERKAREAQK---SKEYTAR---EIDELKAKEADLRARLERKRYSNPLREKEKIERELRKE 157
ER+A + +K SKE E+ EL+ + ADL + + EK I+ + +
Sbjct: 420 EREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWK--------AEKAAIQGIQQIK 471
Query: 158 RLLEAERVKEAYKERVKD 175
+E R++ ER D
Sbjct: 472 EEIEQVRLELEQAEREGD 489
>gnl|CDD|241525 cd13374, PH_RASAL3, RAS protein activator like-3 Pleckstrin
homology (PH) domain. RASAL3 is thought to be a Ras
GTPase-activating protein. It is involved in positive
regulation of Ras GTPase activity and of small GTPase
mediated signal transduction as well as negative
regulation of Ras protein signal transduction. It
contains a PH domain, a C2 domain, and a Ras-GAP domain.
PH domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 180
Score = 29.5 bits (66), Expect = 6.9
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 235 GLVVLTDESRSPTPQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEE 294
LV+L E P R +PG+ G SA+ S G + +E + +
Sbjct: 1 KLVLLGPEEEGP---RRPRPGSASSGGS-IISAKGSGGDPDRKPGKTEPEAAGQNQVHNV 56
Query: 295 ENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEKDTLPPYL 352
K +KK + + + K ++ E VS I + D+ E ++ L P L
Sbjct: 57 RGLLKRLKEEKKARVSGEGKPSSSARGSQESLVSEGTIKELDLSAERNVQVWPLHPSL 114
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 30.2 bits (68), Expect = 6.9
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 248 PQRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDE--EENDENEDKADK 305
R ++ G+EE E E + + SE S+ E E+ D+ E
Sbjct: 638 KSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGV 697
Query: 306 KEKKAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEKDT 347
R+ N + ++ +D E + DT
Sbjct: 698 VPIDKAVRRALPKVLNLPDALDGGDSEDEEGMDDEQMMRLDT 739
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 30.2 bits (68), Expect = 6.9
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 109 EAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEA 168
E ++++E RE E K + A L+ ERK +++E IE R R L+A +
Sbjct: 4 ELRRAREKLEREQRERKQR-AKLKLERERKAKEEAAKQREAIEAAQR-SRRLDAIEAQIK 61
Query: 169 YKERVKDVEQ 178
+++++ Q
Sbjct: 62 ADQQMQESLQ 71
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 28.8 bits (65), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 282 EDSSQDSSSSDEEENDENEDKADKKEKKAKKRKK 315
ED S D +EEE+DE +D D+ E++ KK
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
>gnl|CDD|221866 pfam12935, Sec16_N, Vesicle coat trafficking protein Sec16
N-terminus. Sec16 is a multi-domain vesicle coat
protein. The overall function of Sec16 is in mediating
the movement of protein-cargo between the organelles of
the secretory pathway. Over-expression of truncated
mutants of only the N-terminus are lethal, and this
portion does not appear to be essential for function so
may act as a stabilising region.
Length = 246
Score = 29.5 bits (66), Expect = 7.3
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 194 NKAKNEMDVDEA-----HQRGEDDGARTPPGPAAPESRSRQDLEAAGLVVLTDESRSPTP 248
+ + D + + GE + PP +S S Q L++ GL D SP
Sbjct: 67 SVFVEDEDDEGSDFFNSLHEGEAVEEQQPPPHLTRKSTS-QVLDSLGLN--PDSLSSPAS 123
Query: 249 QRDEKPGTGQEEGE-LAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKE 307
P E LA S + + SE S+ SE+ + ++E++ + D E
Sbjct: 124 AEPLDPTAQNEFSNVLAASTDGNPESESQSEPSSEEELAARAELSDDESESTPTEDDLAE 183
Query: 308 KK 309
+
Sbjct: 184 RW 185
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 30.2 bits (68), Expect = 7.3
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 79 RNKSDQSDGGHKSHRRRDEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERK 138
R+K + + G ++ R D R + Y + + ELK EA RL+ K
Sbjct: 347 RDKEEAAGNGFEAERVHDL----------RSLECMLRYQSSQR-ELKQTEAAYCKRLDEK 395
Query: 139 RYSNPLREKEKIEREL--RKERLL--EAERVKEAYKERVKDVEQKRKRYRTRSRSR 190
R E+E +R +E EA K A +V D E+ Y R +
Sbjct: 396 RLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAW 451
Score = 29.8 bits (67), Expect = 8.8
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 71 HHKEKERDRNKSDQSDGGHKSHRRRDEDR------KHRDERKAREAQKSKEYTAREIDEL 124
H + + QS +R+ + K DE++ E + +E R D+
Sbjct: 362 VHDLRSLECMLRYQS-------SQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDE 414
Query: 125 KAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVKEAYKE 171
+ A AR E+ ++ + +KE++ + ++ K+
Sbjct: 415 EEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLREKQ 461
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201). This is
a family of coiled-coil proteins from eukaryotes. The
function is not known.
Length = 177
Score = 29.1 bits (66), Expect = 7.3
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 120 EIDELKAKEADLRARLERKRYSNPLREKEKIERELRKER----LLEAERVKEAYKERVKD 175
E+ E + + A LR L + + E++K+ ++ +K R LL + Y + V+
Sbjct: 99 ELKEKEERLAKLRKELYKVK-----LERDKLRKQNKKLRQQGGLLHVPALLYDYDKTVEK 153
Query: 176 VEQKRKR 182
VE+KRK
Sbjct: 154 VEEKRKS 160
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 29.5 bits (67), Expect = 7.4
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 97 EDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRK 156
E K E++ ++ ++ KE + + EL+AK + R E +R R ++I L+K
Sbjct: 119 EQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAF-LKK 177
Query: 157 E 157
+
Sbjct: 178 Q 178
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 29.1 bits (66), Expect = 7.5
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 103 DERKAREAQKSKEYTAREIDELKAKEAD-LRARLERKRYSNPLREKEKIERELRKERLLE 161
D++KA++A+K K ++ + D L+ E + EK + +REL ++R E
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAK-----AEKAERDRELNRQRQAE 67
Query: 162 AERVKEAYKERVKDVEQ 178
AE+ K V ++Q
Sbjct: 68 AEQ-----KAIVAQIKQ 79
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 29.3 bits (66), Expect = 7.9
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 108 REAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLLEAERVK- 166
REA++ E E E K + R + LR+ EK E E ++R++ + ++
Sbjct: 13 REAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEK-EAERERQRIISSALLEA 71
Query: 167 -----EAYKERVKDVEQK 179
EA +E ++ V +
Sbjct: 72 RRKLLEAKEEILESVFEA 89
>gnl|CDD|193258 pfam12782, Innate_immun, Invertebrate innate immunity transcript
family. The immune response of the purple sea urchin
appears to be more complex than previously believed in
that it uses immune-related gene families homologous to
vertebrate Toll-like and NOD/NALP-like receptor families
as well as C-type lectins and a rudimentary complement
system. In addition, the species also produces this
unusual family of mRNAs, also known as 185/333, which is
strongly upregulated in response to pathogen challenge.
Length = 312
Score = 29.6 bits (66), Expect = 7.9
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 37 RTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDRNKSDQSDGGHKSHRRRD 96
R HG QD+ Q R+ +E R H H + N + G + RR+
Sbjct: 145 RHHGHRQGPPQDRPEEQPFGQ-RNESSEEDGRPHPHHHRHHGHNHFGRKPFGGRPFGRRN 203
Query: 97 EDRKHR 102
H+
Sbjct: 204 HTEGHQ 209
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein)
[Intracellular trafficking and secretion].
Length = 211
Score = 29.2 bits (65), Expect = 7.9
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 12/100 (12%)
Query: 249 QRDEKPGTGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEK 308
+R +K E+ E S + G + + + EN
Sbjct: 4 ERKKKQ-AKIEKEENEQKERSLDVVSKGDAFGDGKAGGEEKKVQQSPFLEN--------- 53
Query: 309 KAKKRKKEDASPNESERDVSPHVIMDQDVDMEIELEKDTL 348
A E P P V+ Q V ++ E +T+
Sbjct: 54 -AVPEGDEGKGPESPNIHFEP-VVELQRVHLKTNEEDETV 91
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 29.6 bits (67), Expect = 8.1
Identities = 11/68 (16%), Positives = 25/68 (36%)
Query: 96 DEDRKHRDERKAREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELR 155
+ED + +E+ A+ + + E K K + + E E E+
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRL 99
Query: 156 KERLLEAE 163
++ E++
Sbjct: 100 RKLQEESD 107
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 28.2 bits (63), Expect = 8.1
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 121 IDELKAKEADLRARLE--RKRYSNPLREKEKIERELRKERLLEAERVKEAY-KERVKDVE 177
+ E+K E +E ++ ++E + RE+ +E EAE++ + +E ++ E
Sbjct: 9 LREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAE 68
Query: 178 QKRKRYRTRSRSR-SPINKAKNEMDVDEA 205
++ + + S I E V EA
Sbjct: 69 EEAEEILAEAEKEASAILSKAAEGKVVEA 97
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 29.7 bits (67), Expect = 8.5
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 274 EESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESE 324
+ E + S E+ +E +D K KE AS ++SE
Sbjct: 381 RSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 28.2 bits (64), Expect = 8.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 107 AREAQKSKEYTAREIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERLL 160
A EA++ ++ ID +A+EA RA +R + E+EK E ER L
Sbjct: 77 ADEAERPED-----IDVERAEEALERAE---ERLAQAKDEREKARAEAALERAL 122
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 29.6 bits (67), Expect = 8.8
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 120 EIDELKAKEADLRARLERKRYSNPLREKEKIERELRKERL-LEAERVKEAYKERVKDVEQ 178
EI L+A+ A+L AR+ER + LR ++E EL +L + E K Y++ + E
Sbjct: 325 EIASLEARVAELTARIERLE--SLLRTIPEVEAEL--TQLNRDYEVNKSNYEQLLTRRES 380
>gnl|CDD|222011 pfam13257, DUF4048, Domain of unknown function (DUF4048). This
presumed domain is functionally uncharacterized. This
domain family is found in eukaryotes, and is typically
between 228 and 257 amino acids in length.
Length = 242
Score = 29.4 bits (66), Expect = 9.2
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 242 ESRSPTPQRDEKPG---TGQEEGELAGSAESSAGSEESSQDGSEDSSQDSSSSDEEENDE 298
ESR+ P R + G T + L G + SS+ S SS S +DS S+D + +
Sbjct: 118 ESRTVPPPRSRRSGSRSTSRSRLRLQGGSLSSSRSSRSSTSKGATSGKDSKSADIDVSFW 177
Query: 299 NE---DKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDVD 338
+E D +K K +K A + + DVD
Sbjct: 178 SEFGIDTPGQKSKSPQKASSTPAGNTNQGQSQNAQSSNLLDVD 220
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 29.5 bits (67), Expect = 9.3
Identities = 13/71 (18%), Positives = 32/71 (45%)
Query: 280 GSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESERDVSPHVIMDQDVDM 339
GS+ +++ E+ + E++ +K+KKA KK++ E + +++
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 340 EIELEKDTLPP 350
E + E++
Sbjct: 464 EEKEEEEEKKK 474
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 29.1 bits (65), Expect = 9.4
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 254 PGTGQEEGELAGSAESSAG-------SEESSQDGSEDSSQDSSSSDEEENDENEDKADK 305
G G G + G S G + E+ SE SSS +E + + D +K
Sbjct: 48 AGGGAPGGPVGGGGGGSGGPPGGGEVAGEAEDAMSEFDDYSSSSIEEGDTTISADVMEK 106
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 29.4 bits (66), Expect = 9.6
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 266 SAESSAGSEESSQDGSEDSSQDSSSSDEEENDENEDKADKKEKKAKKRKKEDASPNESE 324
S E E S S+D S +++D+ ED + +K KED E+E
Sbjct: 217 SLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETE 275
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus (amino
acids 9 to 91 in S. cerevisiae) is thought to contain a
novel zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 29.7 bits (66), Expect = 9.8
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 20 QLHKSHHRSHKDKHSSHRTHGSSSSSQQDKSSSQHKSHHRSRHRDERDRRHHHKEKERDR 79
Q HH S H G Q Q H+ +H+ D HH ++R
Sbjct: 293 QHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQQQDLQHQEQHQQHVD-NDHHVYQDRIG 351
Query: 80 NKSDQSDGG 88
+ SD D
Sbjct: 352 SISDNDDAA 360
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.130 0.380
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,397,001
Number of extensions: 5252037
Number of successful extensions: 10713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8161
Number of HSP's successfully gapped: 1204
Length of query: 1028
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 921
Effective length of database: 6,191,724
Effective search space: 5702577804
Effective search space used: 5702577804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (28.5 bits)