Query psy18164
Match_columns 1212
No_of_seqs 574 out of 3933
Neff 8.0
Searched_HMMs 46136
Date Sat Aug 17 00:15:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0104|consensus 100.0 3E-137 8E-142 1179.4 70.8 875 266-1194 5-890 (902)
2 KOG0100|consensus 100.0 3E-115 6E-120 933.6 60.7 603 282-1013 35-644 (663)
3 KOG0103|consensus 100.0 2E-113 4E-118 986.4 61.7 725 283-1139 1-727 (727)
4 PTZ00009 heat shock 70 kDa pro 100.0 2.6E-96 6E-101 914.0 72.7 605 282-1012 3-614 (653)
5 PRK13410 molecular chaperone D 100.0 6.9E-94 1.5E-98 887.4 70.2 608 284-1028 3-621 (668)
6 PTZ00400 DnaK-type molecular c 100.0 2.7E-93 6E-98 885.6 72.2 588 283-1010 41-636 (663)
7 PRK13411 molecular chaperone D 100.0 6.2E-92 1.3E-96 873.4 73.6 589 284-1011 3-600 (653)
8 PRK00290 dnaK molecular chaper 100.0 1E-90 2.3E-95 864.5 74.0 587 284-1012 3-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 1.9E-90 4.1E-95 860.3 72.0 588 283-1011 39-635 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 6.6E-90 1.4E-94 847.6 72.7 589 283-1009 27-622 (657)
11 TIGR02350 prok_dnaK chaperone 100.0 1.8E-89 4E-94 851.3 72.4 584 285-1010 2-593 (595)
12 CHL00094 dnaK heat shock prote 100.0 4.5E-89 9.8E-94 846.8 71.7 587 284-1011 3-598 (621)
13 TIGR01991 HscA Fe-S protein as 100.0 4E-86 8.6E-91 815.0 73.2 577 285-1008 1-581 (599)
14 KOG0101|consensus 100.0 1.5E-87 3.2E-92 785.1 51.0 605 280-1013 4-615 (620)
15 PF00012 HSP70: Hsp70 protein; 100.0 3.5E-86 7.7E-91 830.7 67.2 594 285-1011 1-601 (602)
16 PRK05183 hscA chaperone protei 100.0 5.6E-85 1.2E-89 806.1 70.9 577 283-1009 19-598 (616)
17 PRK01433 hscA chaperone protei 100.0 1.6E-79 3.4E-84 750.3 70.4 546 284-1005 20-572 (595)
18 KOG0102|consensus 100.0 1.1E-81 2.4E-86 702.1 44.6 594 280-1010 24-625 (640)
19 COG0443 DnaK Molecular chapero 100.0 3.8E-78 8.2E-83 733.5 59.8 570 283-1012 5-578 (579)
20 PRK11678 putative chaperone; P 100.0 5.5E-52 1.2E-56 491.0 37.7 346 285-677 2-448 (450)
21 KOG0100|consensus 100.0 2.6E-46 5.6E-51 402.5 20.9 218 36-260 36-255 (663)
22 PRK13928 rod shape-determining 100.0 5.8E-36 1.3E-40 347.3 34.1 308 286-678 6-325 (336)
23 PRK13929 rod-share determining 100.0 3E-35 6.5E-40 340.2 34.5 305 285-674 6-324 (335)
24 PTZ00186 heat shock 70 kDa pre 100.0 3.5E-36 7.6E-41 371.5 24.3 214 36-258 27-240 (657)
25 PTZ00400 DnaK-type molecular c 100.0 1.7E-35 3.6E-40 368.7 26.8 212 36-257 41-253 (663)
26 PTZ00009 heat shock 70 kDa pro 100.0 3.1E-35 6.7E-40 366.7 25.5 219 35-258 3-222 (653)
27 PRK13410 molecular chaperone D 100.0 1.8E-34 3.8E-39 358.2 24.6 211 37-258 3-215 (668)
28 PRK13411 molecular chaperone D 100.0 2.9E-34 6.3E-39 357.5 25.1 211 37-258 3-214 (653)
29 PRK13927 rod shape-determining 100.0 9.6E-33 2.1E-37 320.8 35.0 306 285-676 7-324 (334)
30 PRK00290 dnaK molecular chaper 100.0 7E-34 1.5E-38 354.8 25.5 210 37-258 3-213 (627)
31 TIGR00904 mreB cell shape dete 100.0 2.5E-32 5.4E-37 316.7 34.8 306 286-676 5-327 (333)
32 PRK05183 hscA chaperone protei 100.0 1.1E-33 2.4E-38 350.1 24.4 211 36-258 19-229 (616)
33 TIGR01991 HscA Fe-S protein as 100.0 8.9E-34 1.9E-38 350.3 23.3 208 38-258 1-209 (599)
34 PLN03184 chloroplast Hsp70; Pr 100.0 1.8E-33 4E-38 350.5 24.8 213 36-259 39-253 (673)
35 TIGR02350 prok_dnaK chaperone 100.0 2.9E-33 6.2E-38 348.4 25.0 209 38-258 2-211 (595)
36 KOG0102|consensus 100.0 8.3E-34 1.8E-38 318.6 17.1 222 35-266 26-248 (640)
37 PRK13930 rod shape-determining 100.0 2.3E-31 4.9E-36 309.7 34.3 309 285-678 10-330 (335)
38 PF00012 HSP70: Hsp70 protein; 100.0 3.9E-33 8.6E-38 350.5 21.0 215 38-258 1-216 (602)
39 COG0443 DnaK Molecular chapero 100.0 4.1E-33 8.8E-38 339.7 20.2 192 36-255 5-197 (579)
40 CHL00094 dnaK heat shock prote 100.0 1.2E-32 2.7E-37 342.4 24.0 211 37-258 3-215 (621)
41 KOG0104|consensus 100.0 2.6E-32 5.6E-37 315.7 22.9 234 24-258 10-243 (902)
42 PRK01433 hscA chaperone protei 100.0 1.8E-32 3.8E-37 336.2 23.0 200 37-260 20-223 (595)
43 KOG0101|consensus 100.0 1.5E-32 3.3E-37 322.9 16.0 214 34-252 5-219 (620)
44 KOG0103|consensus 100.0 1.9E-31 4E-36 309.0 18.2 226 36-262 1-228 (727)
45 PRK11678 putative chaperone; P 100.0 3.2E-29 6.9E-34 297.3 18.6 179 38-252 2-231 (450)
46 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.7E-27 3.8E-32 268.5 21.0 306 285-675 3-320 (326)
47 COG1077 MreB Actin-like ATPase 99.9 5.5E-25 1.2E-29 237.0 28.7 311 283-678 6-333 (342)
48 TIGR02529 EutJ ethanolamine ut 99.9 4.3E-26 9.3E-31 250.1 19.9 204 393-672 35-238 (239)
49 PRK15080 ethanolamine utilizat 99.9 5.5E-24 1.2E-28 237.6 28.5 202 397-674 66-267 (267)
50 TIGR01174 ftsA cell division p 99.9 3.8E-20 8.3E-25 218.0 25.7 194 433-673 158-371 (371)
51 PRK09472 ftsA cell division pr 99.8 2.1E-18 4.7E-23 205.4 28.9 195 436-676 169-388 (420)
52 PRK13929 rod-share determining 99.8 1.5E-18 3.3E-23 201.0 16.6 161 37-250 5-170 (335)
53 PRK13928 rod shape-determining 99.7 4.2E-17 9.1E-22 189.6 18.0 159 39-250 6-167 (336)
54 TIGR00904 mreB cell shape dete 99.7 1.3E-16 2.8E-21 185.4 18.2 159 39-250 5-170 (333)
55 PRK13927 rod shape-determining 99.7 5.8E-16 1.2E-20 180.3 15.0 159 38-250 7-168 (334)
56 PRK13930 rod shape-determining 99.7 2.1E-15 4.6E-20 175.7 19.1 159 39-250 11-172 (335)
57 COG1077 MreB Actin-like ATPase 99.6 6.7E-15 1.5E-19 159.6 16.2 161 37-250 7-173 (342)
58 COG0849 ftsA Cell division ATP 99.6 2E-13 4.3E-18 158.4 28.7 206 422-677 158-381 (418)
59 PF06723 MreB_Mbl: MreB/Mbl pr 99.6 2.4E-15 5.2E-20 170.3 12.5 158 38-248 3-163 (326)
60 cd00012 ACTIN Actin; An ubiqui 99.5 4.5E-13 9.7E-18 158.4 21.0 300 286-676 2-347 (371)
61 TIGR02529 EutJ ethanolamine ut 99.5 3.4E-13 7.4E-18 148.3 13.8 87 151-248 40-126 (239)
62 smart00268 ACTIN Actin. ACTIN 99.4 2.2E-12 4.8E-17 152.7 18.0 298 285-676 3-347 (373)
63 COG4820 EutJ Ethanolamine util 99.4 7E-13 1.5E-17 132.9 8.0 195 402-672 76-270 (277)
64 PRK13917 plasmid segregation p 99.4 8.7E-11 1.9E-15 136.3 24.1 213 418-678 109-338 (344)
65 PTZ00280 Actin-related protein 99.2 1.2E-09 2.6E-14 130.8 23.6 224 398-653 82-337 (414)
66 PRK15080 ethanolamine utilizat 99.2 3.4E-10 7.3E-15 126.9 16.0 88 150-248 66-153 (267)
67 TIGR03739 PRTRC_D PRTRC system 99.1 1.2E-08 2.6E-13 117.9 22.8 208 418-674 101-318 (320)
68 PF00022 Actin: Actin; InterP 99.1 6.8E-09 1.5E-13 124.0 20.6 312 283-677 4-368 (393)
69 TIGR01175 pilM type IV pilus a 99.0 8.3E-08 1.8E-12 112.7 24.4 183 432-674 142-347 (348)
70 PTZ00281 actin; Provisional 98.9 2.1E-08 4.6E-13 118.4 18.4 234 399-675 82-349 (376)
71 PF11104 PilM_2: Type IV pilus 98.9 6.8E-08 1.5E-12 112.7 22.0 183 432-674 135-339 (340)
72 PTZ00004 actin-2; Provisional 98.9 6E-08 1.3E-12 114.7 20.0 235 398-675 81-351 (378)
73 PTZ00466 actin-like protein; P 98.9 1.2E-07 2.7E-12 111.8 21.4 236 398-675 87-353 (380)
74 PTZ00452 actin; Provisional 98.9 1.5E-07 3.2E-12 111.0 21.7 236 399-675 81-348 (375)
75 COG4820 EutJ Ethanolamine util 98.6 4.2E-08 9E-13 99.1 6.3 83 155-248 76-158 (277)
76 PRK09472 ftsA cell division pr 98.6 3.3E-07 7.1E-12 109.8 13.2 55 188-248 168-222 (420)
77 TIGR01174 ftsA cell division p 98.5 1.5E-06 3.3E-11 102.8 14.1 58 185-248 157-214 (371)
78 PF06406 StbA: StbA protein; 98.5 2.1E-06 4.6E-11 99.0 14.9 173 448-671 141-316 (318)
79 cd00012 ACTIN Actin; An ubiqui 98.4 1.3E-06 2.7E-11 103.6 12.7 149 39-248 2-161 (371)
80 smart00268 ACTIN Actin. ACTIN 98.4 2.8E-06 6E-11 100.8 15.5 148 37-248 2-161 (373)
81 COG4972 PilM Tfp pilus assembl 98.4 5.5E-05 1.2E-09 83.4 21.9 161 435-653 151-312 (354)
82 TIGR00241 CoA_E_activ CoA-subs 98.3 9.8E-06 2.1E-10 90.2 16.5 173 451-672 73-247 (248)
83 COG0849 ftsA Cell division ATP 98.3 7.8E-06 1.7E-10 95.7 14.1 63 176-248 159-221 (418)
84 COG5277 Actin and related prot 98.2 4.2E-05 9.1E-10 91.0 19.0 193 286-541 9-205 (444)
85 KOG0679|consensus 98.2 0.00011 2.4E-09 82.1 19.1 116 398-540 86-202 (426)
86 PRK13917 plasmid segregation p 97.8 0.00017 3.7E-09 84.0 14.1 74 175-248 115-203 (344)
87 TIGR03739 PRTRC_D PRTRC system 97.8 7.1E-05 1.5E-09 86.6 10.1 76 171-248 101-185 (320)
88 PTZ00280 Actin-related protein 97.8 0.00048 1E-08 82.8 16.6 96 151-248 82-178 (414)
89 PF07520 SrfB: Virulence facto 97.7 0.002 4.4E-08 81.4 21.5 273 392-678 415-836 (1002)
90 PRK10719 eutA reactivating fac 97.7 0.00028 6.2E-09 82.6 12.4 86 420-530 89-182 (475)
91 TIGR03192 benz_CoA_bzdQ benzoy 97.6 0.0068 1.5E-07 67.8 20.6 47 630-676 241-288 (293)
92 KOG0676|consensus 97.5 0.00075 1.6E-08 77.7 12.7 192 420-653 100-315 (372)
93 PF00022 Actin: Actin; InterP 97.5 0.001 2.2E-08 79.6 14.0 150 36-247 4-159 (393)
94 PTZ00004 actin-2; Provisional 97.5 0.002 4.3E-08 76.5 15.7 83 151-247 81-166 (378)
95 TIGR03286 methan_mark_15 putat 97.4 0.0087 1.9E-07 69.5 19.1 46 630-675 357-402 (404)
96 PRK10719 eutA reactivating fac 97.3 0.0015 3.4E-08 76.6 12.5 64 174-249 90-165 (475)
97 COG1924 Activator of 2-hydroxy 97.3 0.028 6E-07 63.9 21.6 45 632-676 346-390 (396)
98 PRK13317 pantothenate kinase; 97.3 0.019 4.1E-07 64.7 20.5 48 628-675 222-273 (277)
99 PTZ00452 actin; Provisional 97.3 0.0044 9.5E-08 73.3 15.6 85 151-247 80-165 (375)
100 PTZ00281 actin; Provisional 97.3 0.0037 8.1E-08 74.1 14.8 81 151-245 81-164 (376)
101 KOG0679|consensus 97.2 0.0045 9.7E-08 69.6 13.6 85 151-247 86-171 (426)
102 PF08841 DDR: Diol dehydratase 97.2 0.004 8.7E-08 67.3 12.1 189 443-675 106-330 (332)
103 PTZ00466 actin-like protein; P 97.1 0.0057 1.2E-07 72.5 14.3 84 151-247 87-171 (380)
104 PF06406 StbA: StbA protein; 97.1 0.0019 4.2E-08 74.6 9.4 42 201-248 141-182 (318)
105 COG4457 SrfB Uncharacterized p 96.8 0.13 2.8E-06 61.6 21.3 87 590-678 742-848 (1014)
106 KOG0797|consensus 96.7 0.011 2.4E-07 68.6 11.6 122 392-539 195-322 (618)
107 COG1069 AraB Ribulose kinase [ 96.6 0.37 7.9E-06 57.6 23.1 224 436-680 232-482 (544)
108 PF02782 FGGY_C: FGGY family o 96.0 0.011 2.5E-07 63.2 6.0 48 628-676 149-196 (198)
109 PF06277 EutA: Ethanolamine ut 95.8 0.11 2.4E-06 61.5 13.5 88 422-529 88-178 (473)
110 TIGR01175 pilM type IV pilus a 95.6 0.16 3.4E-06 59.8 14.4 65 184-248 141-206 (348)
111 PF07520 SrfB: Virulence facto 95.0 0.13 2.8E-06 65.7 11.3 54 145-198 415-482 (1002)
112 PRK15027 xylulokinase; Provisi 94.9 0.058 1.3E-06 66.4 7.9 83 595-681 356-439 (484)
113 TIGR02259 benz_CoA_red_A benzo 94.7 0.55 1.2E-05 54.4 14.1 45 630-674 383-432 (432)
114 PLN02669 xylulokinase 94.5 0.09 2E-06 65.6 8.4 71 604-676 422-492 (556)
115 TIGR01315 5C_CHO_kinase FGGY-f 94.5 0.1 2.2E-06 65.1 9.0 85 595-680 410-494 (541)
116 PF14574 DUF4445: Domain of un 94.3 1.1 2.4E-05 53.2 16.1 86 588-674 288-375 (412)
117 PF06277 EutA: Ethanolamine ut 93.9 0.59 1.3E-05 55.5 12.8 73 175-250 88-163 (473)
118 COG5277 Actin and related prot 93.9 0.61 1.3E-05 56.1 13.3 160 39-247 9-173 (444)
119 PRK00047 glpK glycerol kinase; 93.6 0.17 3.6E-06 62.6 8.0 52 628-680 403-454 (498)
120 TIGR01312 XylB D-xylulose kina 93.5 0.18 4E-06 62.0 8.4 53 628-681 390-442 (481)
121 PF13941 MutL: MutL protein 93.5 0.26 5.7E-06 58.9 9.0 43 38-87 2-46 (457)
122 TIGR01311 glycerol_kin glycero 93.5 0.15 3.3E-06 62.8 7.5 52 628-680 399-450 (493)
123 PF01968 Hydantoinase_A: Hydan 93.2 0.18 4E-06 57.4 7.0 68 603-673 216-284 (290)
124 TIGR01234 L-ribulokinase L-rib 93.0 0.22 4.8E-06 62.1 8.0 81 595-680 405-487 (536)
125 PRK04123 ribulokinase; Provisi 93.0 0.2 4.4E-06 62.6 7.6 52 628-680 438-490 (548)
126 TIGR02628 fuculo_kin_coli L-fu 92.9 0.23 4.9E-06 60.8 7.7 52 628-680 393-444 (465)
127 PTZ00294 glycerol kinase-like 92.9 0.24 5.3E-06 61.2 8.0 51 629-680 407-457 (504)
128 PRK10331 L-fuculokinase; Provi 92.5 0.26 5.7E-06 60.4 7.6 53 628-681 389-441 (470)
129 PLN02295 glycerol kinase 92.4 0.29 6.2E-06 60.7 7.8 53 627-680 411-463 (512)
130 TIGR02627 rhamnulo_kin rhamnul 92.3 0.31 6.6E-06 59.5 7.7 52 628-681 387-438 (454)
131 TIGR01314 gntK_FGGY gluconate 92.1 0.44 9.5E-06 59.0 8.8 81 596-680 371-452 (505)
132 KOG2517|consensus 92.0 0.47 1E-05 57.1 8.3 75 603-681 392-466 (516)
133 KOG2531|consensus 91.9 0.43 9.4E-06 55.4 7.6 54 622-676 436-489 (545)
134 PF14450 FtsA: Cell division p 91.7 0.36 7.8E-06 47.3 6.0 48 479-537 1-52 (120)
135 TIGR02261 benz_CoA_red_D benzo 91.6 0.65 1.4E-05 51.5 8.4 44 631-674 214-262 (262)
136 PRK10640 rhaB rhamnulokinase; 91.4 0.44 9.6E-06 58.4 7.7 52 628-681 375-426 (471)
137 TIGR00555 panK_eukar pantothen 91.0 2 4.2E-05 48.4 11.5 46 627-672 229-278 (279)
138 PRK10939 autoinducer-2 (AI-2) 90.8 0.52 1.1E-05 58.6 7.7 52 628-680 409-460 (520)
139 COG4457 SrfB Uncharacterized p 90.8 1.3 2.9E-05 53.4 10.4 53 145-197 422-488 (1014)
140 COG0145 HyuA N-methylhydantoin 90.5 3.4 7.5E-05 52.2 14.3 48 443-495 249-296 (674)
141 KOG0677|consensus 90.2 6.5 0.00014 42.5 13.8 194 420-653 102-319 (389)
142 smart00842 FtsA Cell division 89.9 0.61 1.3E-05 49.5 6.2 30 186-215 157-186 (187)
143 COG0248 GppA Exopolyphosphatas 89.5 2.5 5.3E-05 51.5 11.5 93 151-248 52-147 (492)
144 COG4819 EutA Ethanolamine util 89.3 3.7 8E-05 46.0 11.5 20 476-495 144-163 (473)
145 COG1070 XylB Sugar (pentulose 88.8 1.5 3.2E-05 54.3 9.4 51 627-678 400-450 (502)
146 PRK10854 exopolyphosphatase; P 88.7 4.8 0.0001 49.9 13.7 59 185-248 96-155 (513)
147 COG4972 PilM Tfp pilus assembl 88.5 5.4 0.00012 45.1 12.3 62 187-248 150-211 (354)
148 KOG0797|consensus 88.4 3.2 6.9E-05 49.1 10.8 92 146-248 196-293 (618)
149 KOG0680|consensus 88.2 45 0.00097 37.7 18.8 101 419-538 93-198 (400)
150 smart00842 FtsA Cell division 88.0 2.4 5.1E-05 45.0 9.1 29 433-461 157-185 (187)
151 COG1548 Predicted transcriptio 87.8 1.4 3E-05 47.6 6.9 73 404-495 76-148 (330)
152 PF13941 MutL: MutL protein 87.5 2.3 4.9E-05 51.1 9.3 43 285-334 2-46 (457)
153 PF14450 FtsA: Cell division p 87.0 0.47 1E-05 46.5 2.8 61 151-215 46-119 (120)
154 PF07318 DUF1464: Protein of u 84.8 14 0.00029 42.6 13.2 54 627-680 259-319 (343)
155 KOG0676|consensus 84.3 3.8 8.2E-05 47.9 8.8 75 154-244 82-159 (372)
156 KOG0681|consensus 84.2 13 0.00028 44.6 12.9 126 393-540 90-216 (645)
157 TIGR00744 ROK_glcA_fam ROK fam 84.2 50 0.0011 38.0 18.4 93 396-494 33-140 (318)
158 PF08841 DDR: Diol dehydratase 84.1 1.4 3E-05 48.4 4.7 47 196-248 106-152 (332)
159 PTZ00297 pantothenate kinase; 82.4 1.1E+02 0.0025 42.7 22.9 49 626-674 1389-1444(1452)
160 COG4819 EutA Ethanolamine util 80.3 26 0.00056 39.6 12.7 71 175-248 90-163 (473)
161 TIGR03706 exo_poly_only exopol 79.5 7.3 0.00016 44.7 8.9 56 435-495 87-143 (300)
162 COG1548 Predicted transcriptio 79.4 16 0.00035 39.8 10.5 70 157-247 76-147 (330)
163 KOG0681|consensus 79.1 2.6 5.6E-05 50.2 5.0 72 596-676 535-614 (645)
164 PF02541 Ppx-GppA: Ppx/GppA ph 77.9 7.6 0.00016 44.2 8.4 53 438-495 77-130 (285)
165 PF02541 Ppx-GppA: Ppx/GppA ph 77.5 5.4 0.00012 45.4 7.1 55 189-248 75-130 (285)
166 PRK11031 guanosine pentaphosph 77.2 9.8 0.00021 46.9 9.6 59 185-248 91-150 (496)
167 PF01968 Hydantoinase_A: Hydan 76.2 2 4.4E-05 48.9 3.1 47 200-254 53-99 (290)
168 PLN02666 5-oxoprolinase 75.4 43 0.00093 45.8 15.4 77 595-674 454-532 (1275)
169 TIGR03706 exo_poly_only exopol 74.7 12 0.00027 42.8 9.0 88 155-248 56-143 (300)
170 PRK11031 guanosine pentaphosph 73.5 14 0.00031 45.5 9.7 56 435-495 94-150 (496)
171 PF03652 UPF0081: Uncharacteri 73.2 3.5 7.7E-05 41.2 3.6 22 36-57 1-22 (135)
172 PRK10854 exopolyphosphatase; P 73.0 13 0.00028 46.1 9.3 56 435-495 99-155 (513)
173 PF01869 BcrAD_BadFG: BadF/Bad 71.8 14 0.00031 41.5 8.6 69 603-674 198-271 (271)
174 KOG1385|consensus 71.7 11 0.00023 44.0 7.3 156 285-495 69-231 (453)
175 TIGR03281 methan_mark_12 putat 71.3 17 0.00037 40.9 8.5 85 594-680 222-315 (326)
176 COG5026 Hexokinase [Carbohydra 71.2 16 0.00034 43.0 8.6 21 281-301 73-93 (466)
177 COG2377 Predicted molecular ch 69.4 72 0.0016 37.1 13.2 174 476-678 162-345 (371)
178 COG0554 GlpK Glycerol kinase [ 69.1 15 0.00032 43.9 7.8 82 596-681 372-454 (499)
179 smart00732 YqgFc Likely ribonu 68.5 4.8 0.0001 37.5 3.2 21 36-56 1-21 (99)
180 COG0248 GppA Exopolyphosphatas 68.3 20 0.00043 43.9 9.1 94 397-495 51-147 (492)
181 PRK09604 UGMP family protein; 66.9 2.5E+02 0.0055 32.7 17.7 59 611-674 242-306 (332)
182 PRK14101 bifunctional glucokin 65.5 56 0.0012 41.8 13.0 74 602-675 243-329 (638)
183 COG0145 HyuA N-methylhydantoin 65.2 7.9 0.00017 49.1 5.1 39 205-248 258-296 (674)
184 PRK14878 UGMP family protein; 65.2 2.7E+02 0.0058 32.3 18.0 40 629-668 242-287 (323)
185 smart00732 YqgFc Likely ribonu 64.4 5.9 0.00013 36.9 3.0 21 283-303 1-21 (99)
186 PF03702 UPF0075: Uncharacteri 63.6 20 0.00043 42.1 7.6 67 605-676 264-337 (364)
187 PRK00109 Holliday junction res 60.4 9.2 0.0002 38.4 3.6 22 35-56 3-24 (138)
188 PF11593 Med3: Mediator comple 58.7 1.2E+02 0.0025 35.3 12.1 37 972-1010 9-45 (379)
189 PF03652 UPF0081: Uncharacteri 58.6 10 0.00022 38.0 3.5 21 283-303 1-21 (135)
190 PRK00976 hypothetical protein; 58.4 33 0.00071 39.4 7.9 51 628-680 263-315 (326)
191 PF08735 DUF1786: Putative pyr 56.5 92 0.002 34.5 10.6 73 416-495 111-185 (254)
192 KOG0994|consensus 56.2 4.1E+02 0.0088 35.5 17.1 21 421-441 999-1019(1758)
193 PLN02939 transferase, transfer 56.1 2.8E+02 0.0061 36.8 16.5 179 911-1127 239-426 (977)
194 cd06007 R3H_DEXH_helicase R3H 55.9 30 0.00065 29.3 5.3 37 411-449 8-44 (59)
195 PF00370 FGGY_N: FGGY family o 55.6 11 0.00024 41.6 3.7 20 38-57 2-21 (245)
196 TIGR03123 one_C_unchar_1 proba 55.4 7.7 0.00017 44.5 2.4 18 231-248 129-146 (318)
197 COG0816 Predicted endonuclease 54.4 11 0.00024 37.9 3.0 21 36-56 2-22 (141)
198 PF11104 PilM_2: Type IV pilus 54.2 21 0.00046 41.7 5.9 64 185-248 135-198 (340)
199 PRK03011 butyrate kinase; Prov 53.6 21 0.00046 42.0 5.6 44 628-671 295-342 (358)
200 PRK09698 D-allose kinase; Prov 53.4 1.5E+02 0.0032 33.9 12.6 48 628-675 236-295 (302)
201 PF00370 FGGY_N: FGGY family o 52.3 14 0.0003 40.9 3.8 19 285-303 2-20 (245)
202 COG5026 Hexokinase [Carbohydra 52.1 47 0.001 39.3 7.9 120 188-336 184-307 (466)
203 PRK04863 mukB cell division pr 50.4 6.5E+02 0.014 35.6 19.5 27 596-622 193-220 (1486)
204 PRK09585 anmK anhydro-N-acetyl 49.7 78 0.0017 37.3 9.4 61 613-676 274-338 (365)
205 PF00349 Hexokinase_1: Hexokin 49.5 42 0.0009 36.2 6.7 22 476-497 62-83 (206)
206 cd02640 R3H_NRF R3H domain of 48.9 48 0.001 28.2 5.5 41 408-449 5-45 (60)
207 PLN02920 pantothenate kinase 1 48.3 69 0.0015 37.8 8.5 50 626-675 295-351 (398)
208 COG4012 Uncharacterized protei 47.4 94 0.002 34.3 8.6 93 426-542 186-278 (342)
209 KOG1385|consensus 46.9 71 0.0015 37.6 8.2 88 135-249 142-232 (453)
210 PLN02362 hexokinase 46.3 59 0.0013 40.0 8.0 53 184-244 204-258 (509)
211 PRK02224 chromosome segregatio 46.3 4.8E+02 0.01 34.8 17.5 73 907-981 144-216 (880)
212 KOG2708|consensus 45.9 2.1E+02 0.0046 30.9 10.7 76 594-674 224-302 (336)
213 PLN02362 hexokinase 45.5 42 0.00091 41.3 6.6 22 281-302 93-114 (509)
214 cd06007 R3H_DEXH_helicase R3H 44.9 52 0.0011 27.8 5.1 29 174-202 16-44 (59)
215 TIGR03123 one_C_unchar_1 proba 44.1 14 0.00031 42.4 2.3 51 595-653 245-299 (318)
216 PRK00109 Holliday junction res 42.7 26 0.00057 35.2 3.6 22 282-303 3-24 (138)
217 COG1940 NagC Transcriptional r 42.4 2.7E+02 0.0058 31.9 12.6 38 445-487 106-143 (314)
218 PLN02405 hexokinase 41.9 94 0.002 38.2 8.8 57 184-248 204-262 (497)
219 PLN02377 3-ketoacyl-CoA syntha 41.7 60 0.0013 39.9 7.1 76 600-675 165-244 (502)
220 PF10458 Val_tRNA-synt_C: Valy 40.4 1E+02 0.0022 26.6 6.5 54 928-981 3-56 (66)
221 TIGR03192 benz_CoA_bzdQ benzoy 40.1 34 0.00074 38.8 4.4 68 392-462 211-281 (293)
222 PF02543 CmcH_NodU: Carbamoylt 40.0 70 0.0015 37.7 7.1 82 593-679 131-216 (360)
223 TIGR00634 recN DNA repair prot 39.6 8.7E+02 0.019 30.5 19.4 17 966-982 224-240 (563)
224 PF03630 Fumble: Fumble ; Int 39.3 4.6E+02 0.01 30.7 13.5 47 628-674 287-340 (341)
225 PRK10331 L-fuculokinase; Provi 38.9 25 0.00053 43.2 3.4 20 37-56 3-22 (470)
226 PLN02666 5-oxoprolinase 38.1 33 0.00072 46.9 4.6 40 205-247 292-331 (1275)
227 KOG1369|consensus 38.1 43 0.00093 40.5 5.0 64 426-497 185-251 (474)
228 COG2441 Predicted butyrate kin 38.0 1.8E+02 0.0039 32.4 9.0 54 627-680 272-336 (374)
229 TIGR02628 fuculo_kin_coli L-fu 37.9 26 0.00057 42.9 3.4 20 38-57 3-22 (465)
230 PF15290 Syntaphilin: Golgi-lo 37.0 3.4E+02 0.0073 30.4 10.9 50 964-1013 89-143 (305)
231 cd02640 R3H_NRF R3H domain of 36.7 76 0.0017 26.9 4.9 42 161-203 5-46 (60)
232 COG0816 Predicted endonuclease 36.5 33 0.00072 34.5 3.2 21 283-303 2-22 (141)
233 PRK15027 xylulokinase; Provisi 36.4 27 0.00059 43.0 3.2 19 38-56 2-20 (484)
234 PLN02405 hexokinase 36.0 1.3E+02 0.0029 36.9 8.8 57 281-337 93-150 (497)
235 TIGR01315 5C_CHO_kinase FGGY-f 35.9 29 0.00062 43.4 3.3 20 37-56 1-20 (541)
236 TIGR00143 hypF [NiFe] hydrogen 35.4 68 0.0015 41.4 6.5 48 628-675 658-711 (711)
237 TIGR02261 benz_CoA_red_D benzo 35.3 41 0.00088 37.6 4.0 18 285-302 3-20 (262)
238 TIGR00241 CoA_E_activ CoA-subs 35.1 28 0.0006 38.7 2.7 66 394-463 177-245 (248)
239 PF02801 Ketoacyl-synt_C: Beta 35.0 40 0.00086 32.7 3.5 46 609-654 25-72 (119)
240 PRK10939 autoinducer-2 (AI-2) 34.8 31 0.00067 42.9 3.3 20 37-56 4-23 (520)
241 PTZ00288 glucokinase 1; Provis 34.5 87 0.0019 37.5 6.8 135 280-487 23-194 (405)
242 PTZ00294 glycerol kinase-like 34.2 32 0.00069 42.7 3.3 20 38-57 4-23 (504)
243 PLN02914 hexokinase 33.9 2.3E+02 0.0049 34.9 10.3 65 179-251 199-265 (490)
244 COG4012 Uncharacterized protei 33.9 75 0.0016 35.0 5.4 58 179-249 186-246 (342)
245 KOG0994|consensus 33.8 1.1E+03 0.023 32.0 15.8 45 925-973 1457-1501(1758)
246 cd00529 RuvC_resolvase Hollida 33.8 34 0.00073 35.1 2.9 17 38-54 2-18 (154)
247 PLN02596 hexokinase-like 33.6 4.3E+02 0.0093 32.6 12.5 59 184-250 204-264 (490)
248 TIGR01314 gntK_FGGY gluconate 33.3 33 0.00072 42.5 3.2 19 38-56 2-20 (505)
249 PF01150 GDA1_CD39: GDA1/CD39 33.2 1.2E+02 0.0025 36.9 7.8 45 202-246 129-180 (434)
250 TIGR00250 RNAse_H_YqgF RNAse H 33.0 30 0.00065 34.3 2.3 18 39-56 1-18 (130)
251 PLN02295 glycerol kinase 32.4 35 0.00076 42.4 3.3 19 38-56 2-20 (512)
252 PRK13310 N-acetyl-D-glucosamin 32.2 4.6E+02 0.01 29.8 12.3 119 285-487 2-133 (303)
253 PF08735 DUF1786: Putative pyr 32.2 1.2E+02 0.0026 33.7 6.8 72 169-247 111-184 (254)
254 PF00349 Hexokinase_1: Hexokin 32.0 51 0.0011 35.6 4.0 26 228-253 61-86 (206)
255 COG4296 Uncharacterized protei 31.9 67 0.0015 31.4 4.2 21 976-996 91-111 (156)
256 TIGR01234 L-ribulokinase L-rib 31.7 40 0.00087 42.1 3.7 17 38-54 3-19 (536)
257 KOG0964|consensus 31.3 1.4E+03 0.03 30.4 17.0 37 963-1001 250-286 (1200)
258 PRK09605 bifunctional UGMP fam 31.2 1.1E+03 0.024 29.3 22.6 50 629-678 246-301 (535)
259 PF05470 eIF-3c_N: Eukaryotic 31.1 3.4E+02 0.0075 34.3 11.4 110 988-1138 21-131 (595)
260 PRK00039 ruvC Holliday junctio 30.9 40 0.00088 34.9 2.9 20 36-55 2-21 (164)
261 PLN02914 hexokinase 30.9 2.7E+02 0.0059 34.2 10.3 56 281-336 93-149 (490)
262 TIGR01311 glycerol_kin glycero 30.5 40 0.00086 41.7 3.3 19 38-56 3-21 (493)
263 PRK00047 glpK glycerol kinase; 30.4 40 0.00086 41.7 3.3 20 37-56 6-25 (498)
264 COG1070 XylB Sugar (pentulose 30.3 40 0.00087 41.7 3.3 21 283-303 4-24 (502)
265 PF08429 PLU-1: PLU-1-like pro 30.1 9.1E+02 0.02 27.9 17.9 188 908-1124 82-290 (335)
266 cd02641 R3H_Smubp-2_like R3H d 29.9 1.3E+02 0.0028 25.5 5.3 28 422-449 18-45 (60)
267 KOG0996|consensus 29.7 6.9E+02 0.015 33.7 13.7 97 911-1018 404-503 (1293)
268 PF08429 PLU-1: PLU-1-like pro 29.5 9.3E+02 0.02 27.8 15.5 138 947-1107 184-327 (335)
269 KOG1386|consensus 28.7 3.7E+02 0.008 32.7 10.4 157 286-495 12-180 (501)
270 PLN02854 3-ketoacyl-CoA syntha 28.6 1.3E+02 0.0029 37.1 7.2 45 610-654 191-236 (521)
271 KOG1029|consensus 28.2 8.4E+02 0.018 31.3 13.4 10 934-943 398-407 (1118)
272 cd02639 R3H_RRM R3H domain of 28.1 1E+02 0.0022 26.2 4.2 29 421-449 17-45 (60)
273 PF00480 ROK: ROK family; Int 27.6 1.5E+02 0.0032 30.7 6.6 88 395-494 31-134 (179)
274 cd02646 R3H_G-patch R3H domain 27.3 1.2E+02 0.0027 25.3 4.7 41 406-449 3-43 (58)
275 PRK04123 ribulokinase; Provisi 26.8 54 0.0012 41.1 3.6 17 38-54 5-21 (548)
276 PF08006 DUF1700: Protein of u 26.3 1.3E+02 0.0027 31.7 5.7 59 942-1009 4-63 (181)
277 KOG0996|consensus 25.5 1.9E+03 0.04 30.0 17.1 10 233-242 168-177 (1293)
278 PF02075 RuvC: Crossover junct 24.7 82 0.0018 32.1 3.8 25 38-62 1-26 (149)
279 PLN02192 3-ketoacyl-CoA syntha 24.1 1.9E+02 0.0042 35.7 7.4 65 601-665 170-238 (511)
280 cd02641 R3H_Smubp-2_like R3H d 24.0 1.8E+02 0.0039 24.6 5.1 29 175-203 18-46 (60)
281 PRK13321 pantothenate kinase; 23.9 66 0.0014 35.9 3.3 19 285-303 2-20 (256)
282 PF12238 MSA-2c: Merozoite sur 23.8 2.7E+02 0.0059 29.8 7.5 17 937-954 8-24 (205)
283 PF05823 Gp-FAR-1: Nematode fa 23.6 3.5E+02 0.0075 27.8 8.1 80 957-1039 17-98 (154)
284 PRK07515 3-oxoacyl-(acyl carri 23.2 1.1E+02 0.0023 36.3 5.0 47 605-653 267-313 (372)
285 COG1924 Activator of 2-hydroxy 22.8 75 0.0016 37.0 3.3 27 31-57 130-156 (396)
286 cd02639 R3H_RRM R3H domain of 22.5 1.4E+02 0.0031 25.4 4.1 30 174-203 17-46 (60)
287 PRK00247 putative inner membra 22.4 1.4E+02 0.003 35.9 5.6 30 1169-1198 399-428 (429)
288 COG2192 Predicted carbamoyl tr 22.3 1.6E+03 0.034 28.0 22.5 81 594-678 255-337 (555)
289 PLN03170 chalcone synthase; Pr 22.2 3.8E+02 0.0082 32.2 9.3 49 606-654 105-154 (401)
290 cd02646 R3H_G-patch R3H domain 22.2 1.7E+02 0.0037 24.5 4.6 41 159-202 3-43 (58)
291 TIGR02259 benz_CoA_red_A benzo 22.0 66 0.0014 38.0 2.7 19 285-303 4-22 (432)
292 PRK13318 pantothenate kinase; 21.9 74 0.0016 35.6 3.1 19 285-303 2-20 (258)
293 PHA02566 alt ADP-ribosyltransf 21.9 1.3E+03 0.028 29.3 13.6 47 928-984 325-371 (684)
294 TIGR00329 gcp_kae1 metallohydr 21.6 1.2E+03 0.027 26.5 15.2 39 609-652 244-282 (305)
295 PF02074 Peptidase_M32: Carbox 21.6 1.6E+03 0.034 27.8 15.5 72 960-1037 76-147 (494)
296 COG5373 Predicted membrane pro 21.4 3.4E+02 0.0074 34.9 8.7 21 1177-1197 87-107 (931)
297 cd00529 RuvC_resolvase Hollida 21.2 6.1E+02 0.013 25.8 9.4 145 478-674 1-150 (154)
298 PRK09557 fructokinase; Reviewe 20.8 1.5E+02 0.0032 33.9 5.4 44 445-494 96-139 (301)
299 TIGR03723 bact_gcp putative gl 20.8 2.1E+02 0.0045 33.1 6.5 56 611-671 247-308 (314)
300 PRK07058 acetate kinase; Provi 20.7 4.7E+02 0.01 31.2 9.3 46 604-653 298-344 (396)
301 PRK13318 pantothenate kinase; 20.7 89 0.0019 34.9 3.5 19 38-56 2-20 (258)
302 KOG0680|consensus 20.7 7.1E+02 0.015 28.7 10.1 70 173-244 94-166 (400)
303 PRK03918 chromosome segregatio 20.6 9.1E+02 0.02 32.2 13.6 50 960-1011 655-704 (880)
304 PRK13321 pantothenate kinase; 20.2 87 0.0019 35.0 3.2 19 38-56 2-20 (256)
305 TIGR03185 DNA_S_dndD DNA sulfu 20.1 1.2E+03 0.026 29.9 13.9 69 908-981 369-438 (650)
306 PLN02669 xylulokinase 20.0 83 0.0018 39.5 3.3 21 36-56 8-28 (556)
No 1
>KOG0104|consensus
Probab=100.00 E-value=3.5e-137 Score=1179.42 Aligned_cols=875 Identities=46% Similarity=0.715 Sum_probs=750.1
Q ss_pred HHHHHHHHHHhhhcccCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCc
Q psy18164 266 LCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 345 (1212)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~ 345 (1212)
+++.++++|+|.+.+..++|++|||||+|++||+++||.|++|++|..++|++|++|+|.+++|+||++|..++.|+|++
T Consensus 5 ~llv~l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~ 84 (902)
T KOG0104|consen 5 VLLVILLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQS 84 (902)
T ss_pred hHHHHHHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHH
Confidence 34444455556677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhHHhcCCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEe
Q psy18164 346 SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVII 425 (1212)
Q Consensus 346 t~~~~k~llG~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VIt 425 (1212)
++.+++.|||++.+||.++.|.+++|++.++.++.|+++.|.+++...|++|+|+||+|.+.++.|+.+...+|.++|||
T Consensus 85 ~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViT 164 (902)
T KOG0104|consen 85 TYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVIT 164 (902)
T ss_pred HHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEe
Confidence 99999999999999999999999999999999989999999999988999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCC
Q psy18164 426 VPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 505 (1212)
Q Consensus 426 VP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g 505 (1212)
||.||+++||+++.+||++||+++++||||.+||||+||++++.+++.+ ++++||||||+|+|.++||.|..++++..|
T Consensus 165 VP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~-~q~~i~YDMGs~sT~Ativsy~~v~~k~~g 243 (902)
T KOG0104|consen 165 VPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINET-PQHYIFYDMGSGSTSATIVSYQLVKTKEQG 243 (902)
T ss_pred CCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCC-ceEEEEEecCCCceeEEEEEEEeecccccc
Confidence 9999999999999999999999999999999999999999999999888 999999999999999999999999887776
Q ss_pred ccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeec
Q psy18164 506 FVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGL 585 (1212)
Q Consensus 506 ~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l 585 (1212)
..++++++++++||++|||..|.++|++||.+.|+++++.+.++..|||||+||.++|+|+|.+||+|.++.++||+|
T Consensus 244 --~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL 321 (902)
T KOG0104|consen 244 --GKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESL 321 (902)
T ss_pred --CccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 457899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchh
Q psy18164 586 IDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDE 664 (1212)
Q Consensus 586 ~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~de 664 (1212)
++|+||+.+|||++||++|.+++.|+..||.++|..++++.++|++|+|+||+||||+||+.|.+++| .++++++|+||
T Consensus 322 ~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDE 401 (902)
T KOG0104|consen 322 IDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADE 401 (902)
T ss_pred hhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 79999999999
Q ss_pred HHHhhHHHHHHhhcCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCceEEEEEe
Q psy18164 665 AAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSY 744 (1212)
Q Consensus 665 aVA~GAa~~aa~ls~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~~ 744 (1212)
|+++||+|+||.||.+||+++|.|.|.++|||.+.+.+..+--..++....||++|.+||++++++|+.+.+||.+.+.|
T Consensus 402 A~vmGav~~aA~LSksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~ 481 (902)
T KOG0104|consen 402 AAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINY 481 (902)
T ss_pred HHHHHHHHHHHhhcccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccch
Confidence 99999999999999999999999999999999999986522002233456799999999999999999999999999999
Q ss_pred ccCcccCChhhhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCcccccc
Q psy18164 745 ASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLG 824 (1212)
Q Consensus 745 g~~~~~~~~~~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~ 824 (1212)
+ +. | .++.+|.++||..+.++......+.++|+++|.+|.+|++.|+.++++|+++.++.+- ...
T Consensus 482 ~-~~-----------~-~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~--~~~ 546 (902)
T KOG0104|consen 482 G-DL-----------G-QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSG--DKK 546 (902)
T ss_pred h-hh-----------c-cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccc--hhh
Confidence 8 42 2 3577999999999998886566778999999999999999999999999986443321 123
Q ss_pred ccccccccCCCCCCCCC-Ccccc--cccCCCCCC----CCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecc
Q psy18164 825 NTLTSLFSRSKTDENEK-PINEA--VDEGNKTAE----EPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPI 897 (1212)
Q Consensus 825 ~~~~~~f~~~~~~~~~~-~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l 897 (1212)
.+.+++|.+++.+++.+ ..+++ +++..++.+ +++.+.+++. + ...+++++.. +.+..++.+.-.+.+.+
T Consensus 547 st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~--e-~k~e~~t~e~-~~~~~~~~~~~p~~~~~ 622 (902)
T KOG0104|consen 547 STLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQ--E-DKTEKETSEA-QKPTEKKETPAPMVVRL 622 (902)
T ss_pred hhhhccccccccccccccccchhhhhhhccCccccccccccccccccc--c-ccccccchhc-cCcchhhcccCcceeEe
Confidence 34455554433222222 11111 111111111 0011111110 0 0111111000 00111111111122224
Q ss_pred eeeEeecCCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHH
Q psy18164 898 SASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT 977 (1212)
Q Consensus 898 ~~~~~~~~~~~ls~eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~ 977 (1212)
.++.+..+.+.|+...+.+++.++..+.++|+.+.+|++|.|.||+|+|+++++|++++|..|++++|++.|.+.+..+.
T Consensus 623 ~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~ 702 (902)
T KOG0104|consen 623 QIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLM 702 (902)
T ss_pred eeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHH
Confidence 45556667778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc---ccCcCCcccCCCCC
Q psy18164 978 NWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNL---SLNTNETEDLNLFS 1054 (1212)
Q Consensus 978 ~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~l~~~~~~---~~~~~~~~~~~~~t 1054 (1212)
+||+||+.+.+++.|.+|+.+|++++..+.+|.+++..+|+.++.|..+|+.+.+|+...++. +++. ..|+
T Consensus 703 ~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d------~~ft 776 (902)
T KOG0104|consen 703 DWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKD------TIFT 776 (902)
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhc------cchh
Confidence 999999999999999999999999999999999999999999999999999999999999854 3332 4799
Q ss_pred HhhhhhhccccchhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHHHHHHHH
Q psy18164 1055 DIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYL 1134 (1212)
Q Consensus 1055 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~W~~~~~~~q~~l~~~~dp~~~~~~i~~k~~~l~~~~~~~ 1134 (1212)
..+++.| .+.|+++..|+++....|.++++++||+++++||..|++.|+|++.|+
T Consensus 777 ~~e~~~L-------------------------~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~ 831 (902)
T KOG0104|consen 777 KTEIDTL-------------------------EKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYL 831 (902)
T ss_pred hhhHHHH-------------------------HHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy18164 1135 ENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPS 1194 (1212)
Q Consensus 1135 ~~k~k~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1194 (1212)
+||+|.++|++.++++++++.++...+...+ ...+...||++..+......++.++.|+
T Consensus 832 lnK~k~~~~~~~k~~e~k~k~~~e~~~s~~~-~~~~~~ae~s~e~~t~e~~~e~~~~~P~ 890 (902)
T KOG0104|consen 832 LNKLKIRKPRKQKKKEKKKKTKEEKEESESN-DETEETAENSTETETTEVNDEQQTQEPS 890 (902)
T ss_pred HHHhhccCccccchhhccccchhhhhhhccC-CCCcchhhccccccceecccccCCCCCc
Confidence 9999999999998887777766655554432 2333344444444444444556666554
No 2
>KOG0100|consensus
Probab=100.00 E-value=2.9e-115 Score=933.61 Aligned_cols=603 Identities=29% Similarity=0.439 Sum_probs=558.6
Q ss_pred CceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 282 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 282 ~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
...||||||||||+||+++++| .++|+.|++|+|.|||+|+|.+.+|++|+.|++++..||+||+++.|||||+.|+|+
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 3569999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCC--ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTND--NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~ 439 (1212)
.+|...+.|||..+..++ .+.+.+.+++ .+.|+|||+.+|+|.++++.|+.++|.++.++|+|||+||+++||+|++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~-kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDG-KPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEcCCC-CccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 999999999998766554 6778887764 3789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEe
Q psy18164 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519 (1212)
Q Consensus 440 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 519 (1212)
+|..+|||+++++||||||||++||+.+... .+++||||+||||||||++.+. ++.|+|+++.
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~g-----EknilVfDLGGGTFDVSlLtId------------nGVFeVlaTn 255 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDG-----EKNILVFDLGGGTFDVSLLTID------------NGVFEVLATN 255 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCC-----cceEEEEEcCCceEEEEEEEEc------------CceEEEEecC
Confidence 9999999999999999999999999987753 7999999999999999999987 5599999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHH
Q psy18164 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 599 (1212)
Q Consensus 520 ~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~e 599 (1212)
||.+|||.|||+++++||.+.|++ +++.|++.+.|++.+|+++||+||..||...++.+.||+++++.||+-++||..
T Consensus 256 GDThLGGEDFD~rvm~~fiklykk--K~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAk 333 (663)
T KOG0100|consen 256 GDTHLGGEDFDQRVMEYFIKLYKK--KHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAK 333 (663)
T ss_pred CCcccCccchHHHHHHHHHHHHhh--hcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhH
Confidence 999999999999999999999998 788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh-CCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f-g~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
||+|.-+||.....|++++|+++++...+|+.|+||||++|||.||++|+++| |++.++.+|||||||+|||.||..+|
T Consensus 334 FEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvls 413 (663)
T KOG0100|consen 334 FEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLS 413 (663)
T ss_pred HHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred CCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhh
Q psy18164 679 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 755 (1212)
Q Consensus 679 ~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 755 (1212)
+.-...++++.|+.|.++||+.. |+ .+..||++++.+|.+|+..|++..|+ +.|.+|+| ++....
T Consensus 414 Gee~t~divLLDv~pLtlGIETv-----GG---VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEG-ER~mtk--- 481 (663)
T KOG0100|consen 414 GEEDTGDIVLLDVNPLTLGIETV-----GG---VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEG-ERPMTK--- 481 (663)
T ss_pred cccCcCcEEEEeeccccceeeee-----cc---eeeccccCCcccCccccceeeecccCCceEEEEEeec-cccccc---
Confidence 98889999999999999999987 55 38899999999999999999998666 89999999 876322
Q ss_pred hhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCC
Q psy18164 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 835 (1212)
Q Consensus 756 ~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~ 835 (1212)
++..|+.|.++||++++++. ++|+|+|++|.||||.|++.+ ..|.
T Consensus 482 ----dn~lLGkFdltGipPAPRGv-------pqIEVtFevDangiL~VsAeD---------Kgtg--------------- 526 (663)
T KOG0100|consen 482 ----DNHLLGKFDLTGIPPAPRGV-------PQIEVTFEVDANGILQVSAED---------KGTG--------------- 526 (663)
T ss_pred ----cccccccccccCCCCCCCCC-------ccEEEEEEEccCceEEEEeec---------cCCC---------------
Confidence 35556788999999999988 799999999999999998873 1110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHH
Q psy18164 836 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 915 (1212)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~ 915 (1212)
++.+ |. ..++...||+|+|+
T Consensus 527 ---------------------------------------------------~~~k------it---ItNd~~rLt~EdIe 546 (663)
T KOG0100|consen 527 ---------------------------------------------------KKEK------IT---ITNDKGRLTPEDIE 546 (663)
T ss_pred ---------------------------------------------------Ccce------EE---EecCCCCCCHHHHH
Confidence 0011 11 22456679999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-ccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 916 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL-EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 916 ~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~-~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+|++..++++..|+..+++.++||.||+|.|.+++.+.+ +.+...+++++++.+...+++..+||+++ .+|.+++|++
T Consensus 547 rMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~e 625 (663)
T KOG0100|consen 547 RMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKEEFKE 625 (663)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHHHHHH
Confidence 999999999999999999999999999999999999976 67999999999999999999999999964 9999999999
Q ss_pred HHHHHHHhhHHHHHHHHhh
Q psy18164 995 KLNEINSLVVPIWERHREH 1013 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~~e~ 1013 (1212)
|+++|..+++||..+++..
T Consensus 626 k~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 626 KKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987653
No 3
>KOG0103|consensus
Probab=100.00 E-value=1.7e-113 Score=986.41 Aligned_cols=725 Identities=30% Similarity=0.454 Sum_probs=644.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
|+|+|||||+.+|.+|+++.| ++++|.|+.|+|.||++|+|..+.|++|..|..+..+|+.||+..+|||+|++|+||.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 569999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeec-CCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVA-DEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
+|...+.+|+..+.. |+..+..+-+.++.+.|++++|+||+|.+|+..++..+..++.+|||+||+||++.||+++++|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 999999999977665 4434444445677789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccC-CCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEec
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDF-NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~-~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 520 (1212)
|++|||++++||||.||+||+||+++..-. ++.++++|+|+|||++++++|++.|. +| +++++++.+
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~------kG------~lkvl~ta~ 227 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFT------KG------KLKVLATAF 227 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeec------cC------cceeeeeec
Confidence 999999999999999999999999987632 22238999999999999999999997 34 899999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHH
Q psy18164 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 600 (1212)
Q Consensus 521 d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~ef 600 (1212)
|+.+||++||.+|.+||+.+|+. ++++|+..|+|+..||+.+|||+|++||+|+....+|||+|+|.|.+..|+|+||
T Consensus 228 D~~lGgr~fDe~L~~hfa~efk~--kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEf 305 (727)
T KOG0103|consen 228 DRKLGGRDFDEALIDHFAKEFKT--KYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEF 305 (727)
T ss_pred ccccccchHHHHHHHHHHHHhcc--ccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHH
Confidence 99999999999999999999999 6677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 601 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 601 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
|+||.|+++|+..++.++|+++++..+||+.|++|||+||||.|++.|+++||+++++++|.|||||+|||++||++||.
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~ 385 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPT 385 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCceEEEEEeccCcccCChhhhhccC
Q psy18164 681 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLG 760 (1212)
Q Consensus 681 fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~~g~~~~~~~~~~~~~~~ 760 (1212)
||||+|.++|+.||+|.+.|....+|++ ....+|++|+++|..|.+||++. .+|++.++|+ +...+|. .
T Consensus 386 frVRef~v~Di~pysIs~~w~~~~ed~~---~~~evF~~~~~~p~~K~lT~~Rk-~~F~lea~yt-~~~~lp~------~ 454 (727)
T KOG0103|consen 386 FRVREFSVEDIVPYSISLRWVKQGEDGG---SVTEVFPKGHPSPSVKLLTFNRK-GPFTLEAKYT-KVNKLPY------P 454 (727)
T ss_pred ccceecceecccceeEEEEeccccccCC---CceeeecCCCCCCCceEEEEEec-CceEEEEEec-cccccCC------C
Confidence 9999999999999999999997766643 24689999999999999999998 8999999999 7666662 2
Q ss_pred ceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCC
Q psy18164 761 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 840 (1212)
Q Consensus 761 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~ 840 (1212)
...|++|.+.++.+. ..++..+++|++++|.+|+++|..+.++.+...++....
T Consensus 455 ~~kI~~~~i~~v~~~------~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~-------------------- 508 (727)
T KOG0103|consen 455 KPKIEKWTITGVTPS------EDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEE-------------------- 508 (727)
T ss_pred CCceeeEEecccccC------ccccccceeEEEEEcCccceeeecceeecccchhccccc--------------------
Confidence 467889999998865 334567899999999999999999976654322210000
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHH
Q psy18164 841 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 920 (1212)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~ 920 (1212)
++ + ...+ +.. .+..+..+.|+++++..|++.... ...|+..+++..+++
T Consensus 509 ------~~------e----~~~~-------~~~------~~~~~~~~~k~kvk~~~L~~~~~~--~~~l~~~~l~~~~e~ 557 (727)
T KOG0103|consen 509 ------PM------E----YDDA-------AKM------LERIAPAENKKKVKKVDLPIEAYT--KGALITDELELYIEK 557 (727)
T ss_pred ------hh------h----hhcc-------hhh------hhhhccccccceeeeccccceeee--ccccCHHHHHHHHHH
Confidence 00 0 0000 000 000111122444555566655433 246999999999999
Q ss_pred HHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy18164 921 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEIN 1000 (1212)
Q Consensus 921 l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~ 1000 (1212)
+.+|..+|+...+|.++||+||+|||+||++|. +.|..|+++++|+.|...|+++++||||||+|.++..|..||.+|+
T Consensus 558 E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~-~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk 636 (727)
T KOG0103|consen 558 ENKMILQDKLEKETVDAKNALEEYVYDMRDKLS-DKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELK 636 (727)
T ss_pred HHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhh-hhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 999999999999999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHhhhhhhccccchhhhcccccccccc
Q psy18164 1001 SLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLF 1080 (1212)
Q Consensus 1001 ~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1212)
++++ ..|+.+++.||.+++++.+.++..+..+.+ +...+
T Consensus 637 ~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~--------------------~~~k~------------------- 675 (727)
T KOG0103|consen 637 KLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES--------------------EMEKV------------------- 675 (727)
T ss_pred hhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--------------------HHHHH-------------------
Confidence 9999 899999999999999999999988875544 33444
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHHHHHHHHHhccc
Q psy18164 1081 KQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 1139 (1212)
Q Consensus 1081 ~~~~~i~~~~~~~~~W~~~~~~~q~~l~~~~dp~~~~~~i~~k~~~l~~~~~~~~~k~k 1139 (1212)
...+++.+.|++..+.+|.+++++.+| +..++|+.+.+.|+..+.++++++|
T Consensus 676 ------~~~~~~a~kw~~~~~~~q~~~~~t~~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 676 ------LLEIEEAEKWLERKSNKQNKLSKTADP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred ------HHHHHHHHHHHhhhhhhhhcccCCCCC-CchHHHHHhhhhhccccccccccCC
Confidence 788999999999999999999999999 9999999999999999999998653
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.6e-96 Score=913.97 Aligned_cols=605 Identities=29% Similarity=0.448 Sum_probs=540.1
Q ss_pred CceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 282 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 282 ~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+++||||||||||+||++++| +++|++|.+|+|+|||+|+|.+++++||..|..++.++|.++++++|||||+.++++
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4679999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 440 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~ 440 (1212)
.++.+.+.|||..+...+....+.+...+ +..|+|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 99999999999766555445555555443 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEec
Q psy18164 441 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520 (1212)
Q Consensus 441 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 520 (1212)
||++|||++++||+||+|||++|+..+... . ++++|||||||||||+||+++. .+.++|+++.+
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~---~-~~~vlv~D~GggT~dvsv~~~~------------~~~~~v~a~~g 225 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGD---G-EKNVLIFDLGGGTFDVSLLTIE------------DGIFEVKATAG 225 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCC---C-CCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecC
Confidence 999999999999999999999999865431 2 6889999999999999999986 34799999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHH
Q psy18164 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 600 (1212)
Q Consensus 521 d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~ef 600 (1212)
|..|||++||.+|++|++++|..+++ +.++..+++++.||+.+||++|+.||++.++.+.|++++++.|++++|||++|
T Consensus 226 d~~lGG~d~D~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~f 304 (653)
T PTZ00009 226 DTHLGGEDFDNRLVEFCVQDFKRKNR-GKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARF 304 (653)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHH
Confidence 99999999999999999999987432 35778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 601 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 601 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
|++|+|+++++..+|+++|++++++..+|+.|+||||+||||+||++|+++|| ..+..++|||||||+|||++||++++
T Consensus 305 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 305 EELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999997 68889999999999999999999998
Q ss_pred C--cccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChh
Q psy18164 680 G--FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 680 ~--fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~ 754 (1212)
. |+++++.+.|++||+||++.. ++ .+.+||++|+++|.+++.+|++..++ +.|.|||| +.....
T Consensus 385 ~~~~~~~~~~~~dv~p~slgi~~~-----~~---~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~eg-e~~~~~-- 453 (653)
T PTZ00009 385 EQSSQVQDLLLLDVTPLSLGLETA-----GG---VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEG-ERAMTK-- 453 (653)
T ss_pred CccccccceEEEeecccccCcccc-----CC---ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEec-ccccCC--
Confidence 5 889999999999999998764 22 26789999999999999999876444 99999999 764322
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+++.|.|+++++++. +.|+++|++|.+|+|+|+..+ .++.
T Consensus 454 -----~n~~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~Gil~v~~~~---------~~t~-------------- 498 (653)
T PTZ00009 454 -----DNNLLGKFHLDGIPPAPRGV-------PQIEVTFDIDANGILNVSAED---------KSTG-------------- 498 (653)
T ss_pred -----CCceEEEEEEcCCCCCCCCC-------ceEEEEEEECCCCeEEEEEec---------ccCC--------------
Confidence 34568889999998775443 579999999999999998762 0000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
|.+ .+.+. ....+|+.+++
T Consensus 499 ------------------------------------------------------~~~----~~~i~---~~~~~ls~~~i 517 (653)
T PTZ00009 499 ------------------------------------------------------KSN----KITIT---NDKGRLSKADI 517 (653)
T ss_pred ------------------------------------------------------cee----eEEEe---eccccccHHHH
Confidence 000 11221 12357999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+++++++.+|..+|+.++++.+++|+||+|||++|++|++++|..++++++|++|.+.++++++||| +++++++++|++
T Consensus 518 ~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~-~~~~~~~~~~~~ 596 (653)
T PTZ00009 518 DRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLE-KNQLAEKEEFEH 596 (653)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHH
Confidence 9999999999999999999999999999999999999976679999999999999999999999999 578999999999
Q ss_pred HHHHHHHhhHHHHHHHHh
Q psy18164 995 KLNEINSLVVPIWERHRE 1012 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~~e 1012 (1212)
|+++|+++++||..|++.
T Consensus 597 kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 597 KQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999753
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.9e-94 Score=887.42 Aligned_cols=608 Identities=26% Similarity=0.384 Sum_probs=533.2
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++.+| .++++.|..|+|.|||+|+|. ++++++|..|+.++.++|.++++++||+||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGG-KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred cEEEEEeCCCcEEEEEEECC-eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 48999999999999999999 556889999999999999996 57899999999999999999999999999999866
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
++...+++||...... .+.+.+.+. .+..|+|++|++|+|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~--~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNE--QGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECC--CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 5666778888665433 344555542 3478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
|++|||++++||+||+||||+|+..+.. ++++|||||||||||+||+++. .+.++|+++.+|
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~~------~~~vlV~DlGgGT~Dvsv~~~~------------~g~~~V~at~gd 219 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRSS------SQTVLVFDLGGGTFDVSLLEVG------------NGVFEVKATSGD 219 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccCC------CCEEEEEECCCCeEEEEEEEEc------------CCeEEEEEeecC
Confidence 9999999999999999999999986532 6899999999999999999986 348999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 597 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR 597 (1212)
..|||.+||.+|++|+.++|.. +.+.++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++.+.|||
T Consensus 220 ~~lGG~dfD~~l~~~l~~~f~~--~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 297 (668)
T PRK13410 220 TQLGGNDFDKRIVDWLAEQFLE--KEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDR 297 (668)
T ss_pred CCCChhHHHHHHHHHHHHHHHh--hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECH
Confidence 9999999999999999999987 4456888899999999999999999999999999999987643 478899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 598 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 598 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
++||++|+++++++..+|+++|+++++.+.+|+.|+||||+||||+||+.|+++||.++..++|||||||+|||++|+++
T Consensus 298 ~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 298 KQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChh
Q psy18164 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 678 s~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 754 (1212)
++. ++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|.+..+ .+.|.||+| +.....
T Consensus 378 s~~--~~~~~l~Dv~p~slgie~~-----~g---~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qG-e~~~~~-- 444 (668)
T PRK13410 378 AGE--LKDLLLLDVTPLSLGLETI-----GG---VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQG-EREMAS-- 444 (668)
T ss_pred ccc--ccceeEEeeccccccceec-----CC---eeEEEEeCCCcccccccccceeccCCCcEEEEEEEee-cccccc--
Confidence 984 6889999999999999886 22 3678999999999999999987643 489999999 765322
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+++.|.|+++++++. ++|+|+|++|.||+|+|++.+. .|.
T Consensus 445 -----~n~~lg~~~l~~i~~~~~g~-------~~I~v~f~id~nGiL~V~a~d~---------~tg-------------- 489 (668)
T PRK13410 445 -----DNKSLGRFKLSGIPPAPRGV-------PQVQVAFDIDANGILQVSATDR---------TTG-------------- 489 (668)
T ss_pred -----CCceEEEEEEeCCCCCCCCC-------CeEEEEEEECCCcEEEEEEEEc---------CCC--------------
Confidence 34568899999999875543 6899999999999999988630 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
++.. +.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~~----~~i~----~~~~ls~~ei 507 (668)
T PRK13410 490 ------------------------------------------------------REQS----VTIQ----GASTLSEQEV 507 (668)
T ss_pred ------------------------------------------------------ceee----eeec----ccccCCHHHH
Confidence 0000 1111 2357999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhcccc--ccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL--EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 992 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~--~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~ 992 (1212)
+++++++.+|...|+.++++.++||+||+|||++|++|.+ ++|..++++++|++|...|+++++|||+++.+..++.|
T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~ 587 (668)
T PRK13410 508 NRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAV 587 (668)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999964 36899999999999999999999999998888899999
Q ss_pred HHHHHHHHHhhHHHHHHHHhhccchHHHHHHHHHHH
Q psy18164 993 ENKLNEINSLVVPIWERHREHQERPEALKSLNNALN 1028 (1212)
Q Consensus 993 ~~Kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~ 1028 (1212)
.+++++|+.++.+|..|+.| +...-+..+++.+.
T Consensus 588 ~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 621 (668)
T PRK13410 588 ADLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFG 621 (668)
T ss_pred HHHHHHHHHHHHHHHHHHhh--cccchhhhHHhhcc
Confidence 99999999999999999998 23333334444443
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.7e-93 Score=885.62 Aligned_cols=588 Identities=26% Similarity=0.400 Sum_probs=524.4
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
++|||||||||||+||++.+| +++|+.|.+|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.++|+
T Consensus 41 ~~viGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred CcEEEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 469999999999999999887 789999999999999999996 468999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
.++.+.+++||..+... ++.+.+.+++ ..|+|+++++|+|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 120 ~~~~~~~~~p~~~~~~~--~~~~~~~~~~-~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 120 ATKKEQKILPYKIVRAS--NGDAWIEAQG-KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHHhhhccCCeEEEecC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99999999999765443 3445566654 78999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
|++|||++++||+||+|||++|+..... ++++|||||||||||+||+++. .+.++|++++|+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~~~------~~~vlV~DlGgGT~DvSv~~~~------------~g~~~v~a~~gd 258 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDKND------GKTIAVYDLGGGTFDISILEIL------------GGVFEVKATNGN 258 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhccccCC------CcEEEEEeCCCCeEEEEEEEec------------CCeeEEEecccC
Confidence 9999999999999999999999986432 6899999999999999999986 347999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 597 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR 597 (1212)
.++||++||.+|++|+.++|+. +.+.++..+++++.+|+.+||++|+.||.+.++.+.++.++.+ .+|.++|||
T Consensus 259 ~~LGG~d~D~~l~~~l~~~f~~--~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR 336 (663)
T PTZ00400 259 TSLGGEDFDQRILNYLIAEFKK--QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSR 336 (663)
T ss_pred CCcCHHHHHHHHHHHHHHHhhh--hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECH
Confidence 9999999999999999999987 4456788899999999999999999999999999999887654 579999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 598 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 598 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
++||++|+|+++++..+|+++|+++++.+.+|+.|+||||+||+|+||+.|+++||.++..++|||+|||+|||++|+++
T Consensus 337 ~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 337 AKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChh
Q psy18164 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 678 s~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 754 (1212)
++. ++++.+.|++||+|||++. ++ .+.+||++|+++|.+++.+|++..+ .+.|.|||| +.....
T Consensus 417 ~~~--~~~~~~~dv~p~slgi~~~-----~g---~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~eg-e~~~~~-- 483 (663)
T PTZ00400 417 KGE--IKDLLLLDVTPLSLGIETL-----GG---VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQG-EREMAA-- 483 (663)
T ss_pred cCC--ccceEEEeccccceEEEec-----CC---eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEe-cCccCC--
Confidence 985 6889999999999999986 22 3678999999999999999987644 389999999 765332
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+++.|.|+++++++. +.|+|+|++|.||+|+|++.+. .+
T Consensus 484 -----~n~~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~Gil~v~a~~~---------~~--------------- 527 (663)
T PTZ00400 484 -----DNKLLGQFDLVGIPPAPRGV-------PQIEVTFDVDANGIMNISAVDK---------ST--------------- 527 (663)
T ss_pred -----cCceeEEEEEcCCCCCCCCC-------ceEEEEEEECCCCCEEEEEEec---------cC---------------
Confidence 24568888999998775443 5799999999999999987630 00
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
.++. .++++ ...+|+.+++
T Consensus 528 -----------------------------------------------------~~~~----~~~i~----~~~~ls~~ei 546 (663)
T PTZ00400 528 -----------------------------------------------------GKKQ----EITIQ----SSGGLSDEEI 546 (663)
T ss_pred -----------------------------------------------------CcEE----EEEee----ccccccHHHH
Confidence 0001 12221 2256999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+++++++.+|..+|+.++++.+++|+||+|||++|++|. ++..++++++|++|.+.++++++|||++ +.++|++
T Consensus 547 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~~ 620 (663)
T PTZ00400 547 EKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--DLKDKISDADKDELKQKITKLRSTLSSE----DVDSIKD 620 (663)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999995 3889999999999999999999999965 5789999
Q ss_pred HHHHHHHhhHHHHHHH
Q psy18164 995 KLNEINSLVVPIWERH 1010 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~ 1010 (1212)
++++|+++++++..++
T Consensus 621 k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 621 KTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988743
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.2e-92 Score=873.42 Aligned_cols=589 Identities=26% Similarity=0.389 Sum_probs=521.8
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-CcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++.+| .+.++.|.+|+|.+||+|+|.+ +++++|..|+.++.++|.++++++|||||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGG-KPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 48999999999999999999 5569999999999999999964 689999999999999999999999999999998864
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
..++++||..+... ++.+.+.+++ ..++|+++++|+|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 82 --~~~~~~~~~~v~~~--~~~~~~~i~~-~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 --EERSRVPYTCVKGR--DDTVNVQIRG-RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred --HHhhcCCceEEecC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 45688998766543 3445566654 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..+.. . ..++|||||||||||+||+++. .+.++|++++||.
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~----~-~~~vlV~DlGgGT~dvsi~~~~------------~~~~~V~at~gd~ 219 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD----Q-EQLILVFDLGGGTFDVSILQLG------------DGVFEVKATAGNN 219 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC----C-CCEEEEEEcCCCeEEEEEEEEe------------CCEEEEEEEecCC
Confidence 999999999999999999999986543 2 6889999999999999999986 3489999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~ 598 (1212)
.|||++||.+|++|+.++|.. +.+.++..+++++.||+.+||++|+.||.+.++.+.+++++.+ .++++.|||+
T Consensus 220 ~LGG~dfD~~l~~~l~~~f~~--~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~ 297 (653)
T PRK13411 220 HLGGDDFDNCIVDWLVENFQQ--QEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRA 297 (653)
T ss_pred CcCHHHHHHHHHHHHHHHHHH--hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHH
Confidence 999999999999999999987 4456888899999999999999999999999999999887643 5789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHhh
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
+||++|+|+++++..+|+++|+++++..++|+.|+||||+||||+||+.|+++|| ..+..++|||+|||+|||++|+++
T Consensus 298 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l 377 (653)
T PRK13411 298 KFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL 377 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998 688899999999999999999999
Q ss_pred cCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChh
Q psy18164 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 678 s~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 754 (1212)
++. ++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|.+..+ .+.|.+|+| +.....
T Consensus 378 ~~~--~~~~~~~dv~p~slgi~~~-----~~---~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~g-e~~~~~-- 444 (653)
T PRK13411 378 GGE--VKDLLLLDVTPLSLGIETL-----GE---VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQG-ERAMAK-- 444 (653)
T ss_pred cCC--ccceeeeecccceeeEEec-----CC---ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEe-cCcccc--
Confidence 986 7899999999999999886 22 3678999999999999999987544 389999999 764322
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+.+.+.|+++++++. ++|+|+|++|.||+|+|++.+. .+
T Consensus 445 -----~n~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~Gil~v~a~d~---------~t--------------- 488 (653)
T PRK13411 445 -----DNKSLGKFLLTGIPPAPRGV-------PQIEVSFEIDVNGILKVSAQDQ---------GT--------------- 488 (653)
T ss_pred -----cCceeeEEEEcCCCCCCCCC-------ccEEEEEEECCCCeEEEEEeec---------cC---------------
Confidence 34568899999999875543 6899999999999999987630 00
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
.+++. +.+. ...+||.+++
T Consensus 489 -----------------------------------------------------~~~~~----~~i~----~~~~ls~~ei 507 (653)
T PRK13411 489 -----------------------------------------------------GREQS----IRIT----NTGGLSSNEI 507 (653)
T ss_pred -----------------------------------------------------CceEe----eEEe----ccccchHHHH
Confidence 00011 1111 1246999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+++++++.+|..+|+.++++.+++|+||+|||++|++|. ++..++++++|+++.+.|+++++|||+ .+++.++|++
T Consensus 508 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~~~~~er~~i~~~l~~~~~wL~~--~~~~~~~~~~ 583 (653)
T PRK13411 508 ERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGELISEELKQRAEQKVEQLEAALTD--PNISLEELKQ 583 (653)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 999999999999999999999999999999999999995 368899999999999999999999996 4578999999
Q ss_pred HHHHHHHhhHHHHHHHH
Q psy18164 995 KLNEINSLVVPIWERHR 1011 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~~ 1011 (1212)
++++|++.+.++..+++
T Consensus 584 ~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 584 QLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-90 Score=864.53 Aligned_cols=587 Identities=28% Similarity=0.434 Sum_probs=522.7
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++++| .++++.|.+|+|.+||+|+|. +++++||..|..++.++|.++++++|||||+. ++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGG-EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 48999999999999999998 567999999999999999996 77899999999999999999999999999998 677
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++.+.+++||..+..+ ++...+.+++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 80 ~~~~~~~~p~~~~~~~--~~~~~~~~~~-~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 80 VQKDIKLVPYKIVKAD--NGDAWVEIDG-KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHHhhcCCeEEEEcC--CCceEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 8888899999766543 3445566654 789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..+. . ++++|||||||||||+||+++. .+.+++++++++.
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~-----~-~~~vlV~D~GggT~dvsv~~~~------------~~~~~vla~~gd~ 218 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK-----G-DEKILVYDLGGGTFDVSILEIG------------DGVFEVLSTNGDT 218 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC-----C-CCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecCCC
Confidence 99999999999999999999988652 2 6899999999999999999986 3489999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~ 598 (1212)
.+||.+||.+|++|+.++|+. +++.++..+++++.||+.+||++|+.||.+.++.+.++.++.+ .++.+.|||+
T Consensus 219 ~lGG~d~D~~l~~~~~~~~~~--~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~ 296 (627)
T PRK00290 219 HLGGDDFDQRIIDYLADEFKK--ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRA 296 (627)
T ss_pred CcChHHHHHHHHHHHHHHHHH--hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHH
Confidence 999999999999999999988 4456788899999999999999999999999999999988653 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+||++|+++++++..+|+++|+++++...+|+.|+||||+||||+||+.|+++||.++..++|||+|||+|||++|++++
T Consensus 297 ~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~ 376 (627)
T PRK00290 297 KFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLA 376 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhh
Q psy18164 679 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 755 (1212)
Q Consensus 679 ~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 755 (1212)
+ +++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|.+..++ +.|.+||| +.....
T Consensus 377 ~--~~~~~~~~d~~~~slgi~~~----~~----~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~g-e~~~~~--- 442 (627)
T PRK00290 377 G--DVKDVLLLDVTPLSLGIETL----GG----VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQG-EREMAA--- 442 (627)
T ss_pred C--CccceeeeeccceEEEEEec----CC----eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEe-cccccC---
Confidence 8 47889999999999999876 22 36789999999999999999876443 89999999 754322
Q ss_pred hhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCC
Q psy18164 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 835 (1212)
Q Consensus 756 ~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~ 835 (1212)
.+..|+++.|+|+++++++. +.|+++|++|.||+|+|++.+. .+
T Consensus 443 ----~~~~lg~~~i~~~~~~~~g~-------~~i~v~f~~d~~gil~v~a~~~---------~~---------------- 486 (627)
T PRK00290 443 ----DNKSLGRFNLTGIPPAPRGV-------PQIEVTFDIDANGIVHVSAKDK---------GT---------------- 486 (627)
T ss_pred ----cCceEEEEEECCCCCCCCCC-------ceEEEEEEECCCceEEEEEEEc---------cC----------------
Confidence 34568899999998775443 5799999999999999987630 00
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHH
Q psy18164 836 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 915 (1212)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~ 915 (1212)
.+... +.+. ...+|+.++++
T Consensus 487 ----------------------------------------------------~~~~~----~~i~----~~~~ls~e~i~ 506 (627)
T PRK00290 487 ----------------------------------------------------GKEQS----ITIT----ASSGLSDEEIE 506 (627)
T ss_pred ----------------------------------------------------CceeE----EEec----cccccCHHHHH
Confidence 00001 1111 22469999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy18164 916 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 995 (1212)
Q Consensus 916 ~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~K 995 (1212)
++++++.+|...|+.++++.+++|+||+|+|.+|++|. ++..++++++|++|.+.|+++++|||++ +.+.|++|
T Consensus 507 ~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k 580 (627)
T PRK00290 507 RMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--ELGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAK 580 (627)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 5888999999999999999999999965 67899999
Q ss_pred HHHHHHhhHHHHHHHHh
Q psy18164 996 LNEINSLVVPIWERHRE 1012 (1212)
Q Consensus 996 l~eL~~~~~pi~~R~~e 1012 (1212)
+++|+++++++..|+++
T Consensus 581 ~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 581 TEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998754
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.9e-90 Score=860.26 Aligned_cols=588 Identities=26% Similarity=0.415 Sum_probs=515.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+|||||||||||+||++.+| .+++++|.+|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.+++
T Consensus 39 ~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECC-eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 358999999999999999999 567999999999999999996 46899999999999999999999999999999876
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 440 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~ 440 (1212)
++...+.+||..+..+ ++.+.+.+. .+..|+|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 117 -~~~~~~~~~~~v~~~~--~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYRVVRDE--NGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeEEEecC--CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 5566778888765443 344555442 346899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEec
Q psy18164 441 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520 (1212)
Q Consensus 441 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 520 (1212)
||++|||++++||+||+|||++|+..... +.++|||||||||||+||+++. .+.++|+++.|
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~~------~~~vlV~DlGgGT~DvSi~~~~------------~~~~eVla~~g 255 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKKS------NETILVFDLGGGTFDVSVLEVG------------DGVFEVLSTSG 255 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccCC------CCEEEEEECCCCeEEEEEEEec------------CCEEEEEEecC
Confidence 99999999999999999999999986532 5789999999999999999985 34899999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeeccc----CcceEEEEe
Q psy18164 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVT 596 (1212)
Q Consensus 521 d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~----~~d~~~~it 596 (1212)
|.+|||++||.+|++|+.++|.. +.+.++..+++++.||+.+||++|+.||.+.++.+.++++.. +.++++.||
T Consensus 256 d~~LGG~dfD~~L~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~it 333 (673)
T PLN03184 256 DTHLGGDDFDKRIVDWLASNFKK--DEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333 (673)
T ss_pred CCccCHHHHHHHHHHHHHHHHHh--hcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEEC
Confidence 99999999999999999999988 455678889999999999999999999999999999987653 367999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 597 RAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 597 R~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
|++||++|+++++++..+|+++|+++++.+++|+.|+||||+||||+||+.|+++||..+..++|||||||+|||++|++
T Consensus 334 R~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hcCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCCh
Q psy18164 677 LSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNP 753 (1212)
Q Consensus 677 ls~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~ 753 (1212)
+++. ++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|.+..+ .+.|.+|+| +.....
T Consensus 414 ls~~--~~~~~~~dv~p~slgi~~~-----~~---~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~g-e~~~~~- 481 (673)
T PLN03184 414 LAGE--VSDIVLLDVTPLSLGLETL-----GG---VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQG-EREFVR- 481 (673)
T ss_pred hccC--ccceEEEecccccceEEec-----CC---eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEee-cccccc-
Confidence 9984 6789999999999999986 22 3678999999999999999987644 378899999 765332
Q ss_pred hhhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccC
Q psy18164 754 EQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSR 833 (1212)
Q Consensus 754 ~~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~ 833 (1212)
.+..|+++.|+|+++++++. +.|+|+|++|.||+|+|++.+. .+
T Consensus 482 ------~n~~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~GiL~V~a~~~---------~t-------------- 525 (673)
T PLN03184 482 ------DNKSLGSFRLDGIPPAPRGV-------PQIEVKFDIDANGILSVSATDK---------GT-------------- 525 (673)
T ss_pred ------cCceEEEEEEeCCCCCCCCC-------ceEEEEEEeCCCCeEEEEEEec---------CC--------------
Confidence 24568889999998775443 5799999999999999998730 00
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHH
Q psy18164 834 SKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQ 913 (1212)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~ee 913 (1212)
.++.. +.++ ...+||.++
T Consensus 526 ------------------------------------------------------~~~~~----~~i~----~~~~ls~ee 543 (673)
T PLN03184 526 ------------------------------------------------------GKKQD----ITIT----GASTLPKDE 543 (673)
T ss_pred ------------------------------------------------------CeEEE----EEec----ccccccHHH
Confidence 00111 1111 234699999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q psy18164 914 VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLE 993 (1212)
Q Consensus 914 l~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~ 993 (1212)
++++++++.+|..+|+.++++++++|+||+|||++|++|. +|..++++++|++|.+.|+++++|||++ +.+.++
T Consensus 544 i~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik 617 (673)
T PLN03184 544 VERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGDKVPADVKEKVEAKLKELKDAIASG----STQKMK 617 (673)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 9999999999999999999999999999999999999995 4889999999999999999999999965 456788
Q ss_pred HHHHHHHHhhHHHHHHHH
Q psy18164 994 NKLNEINSLVVPIWERHR 1011 (1212)
Q Consensus 994 ~Kl~eL~~~~~pi~~R~~ 1011 (1212)
+++++|.+..+++..+++
T Consensus 618 ~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 618 DAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888776543
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6.6e-90 Score=847.58 Aligned_cols=589 Identities=25% Similarity=0.366 Sum_probs=523.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
..+||||||||||+||++.+| .++++.|..|.|.+||+|+|.++++++|..|+.++.++|.++++++||+||+.++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 459999999999999999988 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++...+.+||..+... .+...+...++..|+|+++++++|++|+..|+.+++.++.++|||||+||++.||+++++||
T Consensus 106 v~~~~~~~p~~vv~~~--~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAG--NGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHhhccCcEEEEEcC--CCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 9999999999766443 33445555556889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..... ++++|||||||||||+||+++. .+.++|+++.||.
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~------~~~vlV~DlGGGT~DvSil~~~------------~g~~~V~at~Gd~ 245 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTK------DSLIAVYDLGGGTFDISVLEIA------------GGVFEVKATNGDT 245 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCC------CCEEEEEECCCCeEEEEEEEEe------------CCEEEEEEecCCC
Confidence 999999999999999999999975432 6899999999999999999986 3489999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~ 598 (1212)
+|||++||.+|++|+.++|+. +++.|+..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||+
T Consensus 246 ~LGG~DfD~~l~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~ 323 (657)
T PTZ00186 246 HLGGEDFDLALSDYILEEFRK--TSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRS 323 (657)
T ss_pred CCCchhHHHHHHHHHHHHHhh--hcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHH
Confidence 999999999999999999988 4556888899999999999999999999999999999876542 4689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+||++|+++++++..+++++|++++++..+|+.|+||||+||||.||++|+++||.++..++|||||||+|||++|++++
T Consensus 324 efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 324 KFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLR 403 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred CCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhh
Q psy18164 679 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 755 (1212)
Q Consensus 679 ~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 755 (1212)
+. ++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|++..++ +.|.|||| +.....
T Consensus 404 ~~--~~~~~l~Dv~p~slgie~~-----~g---~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qG-e~~~~~--- 469 (657)
T PTZ00186 404 GD--VKGLVLLDVTPLSLGIETL-----GG---VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQG-EREMAA--- 469 (657)
T ss_pred cc--cCceEEEeeccccccceec-----CC---EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEe-cccccc---
Confidence 85 6789999999999999986 32 37799999999999999999887553 99999999 765322
Q ss_pred hhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCC
Q psy18164 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 835 (1212)
Q Consensus 756 ~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~ 835 (1212)
.+..|+++.|.|+++++++. +.|+|+|++|.||+|+|++.+. .|.
T Consensus 470 ----~n~~lg~~~l~~ip~~~~G~-------~~I~Vtf~iD~nGiL~V~a~d~---------~tg--------------- 514 (657)
T PTZ00186 470 ----DNQMMGQFDLVGIPPAPRGV-------PQIEVTFDIDANGICHVTAKDK---------ATG--------------- 514 (657)
T ss_pred ----cccccceEEEcCCCCCCCCC-------CcEEEEEEEcCCCEEEEEEEEc---------cCC---------------
Confidence 24457788999999886554 6899999999999999998741 000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHH
Q psy18164 836 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 915 (1212)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~ 915 (1212)
+... +.++ ....|++++++
T Consensus 515 -----------------------------------------------------~~~~----~~i~----~~~~ls~~~i~ 533 (657)
T PTZ00186 515 -----------------------------------------------------KTQN----ITIT----ANGGLSKEQIE 533 (657)
T ss_pred -----------------------------------------------------cEEE----EEec----cCccCCHHHHH
Confidence 0001 1111 22359999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy18164 916 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 995 (1212)
Q Consensus 916 ~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~K 995 (1212)
++.+...+....|+.++++.+++|.+|+++|.++..+.+ . ..+++++++.+...++..++||. +.+.+.+.++++
T Consensus 534 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 608 (657)
T PTZ00186 534 QMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYVSDAEKENVKTLVAELRKAME--NPNVAKDDLAAA 608 (657)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccCCHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHH
Confidence 999999999999999999999999999999999999953 2 46899999999999999999997 345577999999
Q ss_pred HHHHHHhhHHHHHH
Q psy18164 996 LNEINSLVVPIWER 1009 (1212)
Q Consensus 996 l~eL~~~~~pi~~R 1009 (1212)
+++|++.+.++..+
T Consensus 609 ~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 609 TDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.8e-89 Score=851.29 Aligned_cols=584 Identities=29% Similarity=0.442 Sum_probs=517.6
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-CcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
|||||||||||+||++++| .++++.|.+|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.++ .+
T Consensus 2 viGIDlGtt~s~va~~~~g-~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGG-EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred EEEEEeCcccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 7999999999999999999 5569999999999999999975 489999999999999999999999999999984 47
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 443 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~ 443 (1212)
+.+.+++||. +..+ ++.+.+.+++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 79 ~~~~~~~~~~-v~~~--~~~~~~~v~~-~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~ 154 (595)
T TIGR02350 79 TEEAKRVPYK-VVGD--GGDVRVKVDG-KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGK 154 (595)
T ss_pred HHHhhcCCee-EEcC--CCceEEEECC-EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 7788899997 4332 4556677664 7899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCC
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 523 (1212)
+|||++++||+||+|||++|+..+.. . ++++|||||||||||+||+++. .+.++|++++|+..
T Consensus 155 ~AGl~v~~li~EptAAAl~y~~~~~~----~-~~~vlV~D~Gggt~dvsv~~~~------------~~~~~v~~~~gd~~ 217 (595)
T TIGR02350 155 IAGLEVLRIINEPTAAALAYGLDKSK----K-DEKILVFDLGGGTFDVSILEIG------------DGVFEVLSTAGDTH 217 (595)
T ss_pred HcCCceEEEecchHHHHHHHhhcccC----C-CcEEEEEECCCCeEEEEEEEec------------CCeEEEEEecCCcc
Confidence 99999999999999999999886532 2 6899999999999999999986 34899999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHHH
Q psy18164 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRAE 599 (1212)
Q Consensus 524 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~e 599 (1212)
+||++||.+|++|+.++|..+ ++.++..+++++.||+.+||++|+.||.+.++.+.++.++.+ .++.+.|||++
T Consensus 218 lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~ 295 (595)
T TIGR02350 218 LGGDDFDQRIIDWLADEFKKE--EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAK 295 (595)
T ss_pred cCchhHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHH
Confidence 999999999999999999984 456888899999999999999999999999999999887643 57899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
||++|+|+++++..+|+++|+++++++.+|+.|+||||+||||+||+.|+++||.++..++|||+|||+|||++||++++
T Consensus 296 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~ 375 (595)
T TIGR02350 296 FEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKG 375 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999998
Q ss_pred CcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhh
Q psy18164 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQI 756 (1212)
Q Consensus 680 ~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~ 756 (1212)
. ++++.+.|++||+||+++. ++ .+.+||++|+++|++++.+|.+..++ +.|.+|+| +.....
T Consensus 376 ~--~~~~~~~d~~~~~igi~~~----~~----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~g-e~~~~~---- 440 (595)
T TIGR02350 376 D--VKDVLLLDVTPLSLGIETL----GG----VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQG-ERPMAA---- 440 (595)
T ss_pred C--cccceeeecccceeEEEec----CC----ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEee-cccccc----
Confidence 6 7889999999999999886 23 26789999999999999999876443 89999999 654322
Q ss_pred hccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCC
Q psy18164 757 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 836 (1212)
Q Consensus 757 ~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~ 836 (1212)
.+..|+++.+.|+++++++. ++|+++|++|.||+|+|++.+.. +
T Consensus 441 ---~~~~lg~~~i~~~~~~~~g~-------~~i~v~f~~d~~G~l~v~~~~~~---------~----------------- 484 (595)
T TIGR02350 441 ---DNKSLGRFELTGIPPAPRGV-------PQIEVTFDIDANGILHVSAKDKG---------T----------------- 484 (595)
T ss_pred ---cCcEeEEEEECCCCCCCCCC-------ceEEEEEEEcCCCeEEEEEEEcc---------C-----------------
Confidence 34568899999998774433 57999999999999999877310 0
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHH
Q psy18164 837 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 916 (1212)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~ 916 (1212)
.++.. +.++ ...+||.+++++
T Consensus 485 ---------------------------------------------------~~~~~----~~i~----~~~~ls~~~~~~ 505 (595)
T TIGR02350 485 ---------------------------------------------------GKEQS----ITIT----ASSGLSEEEIER 505 (595)
T ss_pred ---------------------------------------------------CceEE----EEec----cccccCHHHHHH
Confidence 00001 1111 124699999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy18164 917 SLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 996 (1212)
Q Consensus 917 ~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl 996 (1212)
+++++.+|...|+.++++.+++|.||+|||++|++|+ ++..++++++|++|.+.++++++|||++ +..+|++++
T Consensus 506 ~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~ 579 (595)
T TIGR02350 506 MVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--EAGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKT 579 (595)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999995 3688999999999999999999999964 678999999
Q ss_pred HHHHHhhHHHHHHH
Q psy18164 997 NEINSLVVPIWERH 1010 (1212)
Q Consensus 997 ~eL~~~~~pi~~R~ 1010 (1212)
++|+++++++..++
T Consensus 580 ~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 580 EELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.5e-89 Score=846.80 Aligned_cols=587 Identities=28% Similarity=0.409 Sum_probs=516.0
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-CcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++++| .++++.|..|+|.+||+|+|.+ +++++|..|+.++.++|.++++++||+||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGG-KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 58999999999999999999 5679999999999999999964 6799999999999999999999999999999865
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
++...+.+||.....+ ++.+.+... .+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~--~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDS--NGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECC--CCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5566677888655433 344555432 3468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
|++|||++++||+||+|||++|+..... +.++|||||||||||+||+++. .+.++|++++++
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~~------~~~vlV~DlGgGT~DvSv~~~~------------~~~~~vla~~gd 219 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKKN------NETILVFDLGGGTFDVSILEVG------------DGVFEVLSTSGD 219 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccCC------CCEEEEEEcCCCeEEEEEEEEc------------CCEEEEEEEecC
Confidence 9999999999999999999999876432 5789999999999999999985 348999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeeccc----CcceEEEEeH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVTR 597 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~----~~d~~~~itR 597 (1212)
..+||++||.+|++|+.++|.. +++.++..+++++.+|+.+||++|+.||.+.++.+.++++.+ +.++...|||
T Consensus 220 ~~lGG~d~D~~l~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 297 (621)
T CHL00094 220 THLGGDDFDKKIVNWLIKEFKK--KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTR 297 (621)
T ss_pred CCcChHHHHHHHHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcH
Confidence 9999999999999999999988 445678889999999999999999999999999999988764 2578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 598 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 598 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
++||++|+++++++..+|+++|+++++...+|+.|+||||+||||.||+.|+++||.++..++|||||||+|||++|+++
T Consensus 298 ~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 298 AKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEecc---CceEEEEEeccCcccCChh
Q psy18164 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYV---GDFNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 678 s~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~---~~~~i~i~~g~~~~~~~~~ 754 (1212)
++. ++++.+.|++||+||+++. ++ .+.+||++|+++|++++.+|.+.. .++.|.||+| +.....
T Consensus 378 s~~--~~~~~~~d~~~~~lgi~~~-----~~---~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~g-e~~~~~-- 444 (621)
T CHL00094 378 AGE--VKDILLLDVTPLSLGVETL-----GG---VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQG-ERELAK-- 444 (621)
T ss_pred cCC--ccceeeeeeeceeeeeecc-----CC---EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEee-ccccCC--
Confidence 984 6889999999999999876 22 377999999999999999998753 3599999999 764322
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+++.|.|+++++++. +.|+++|++|.+|+|+|++.+. .+.
T Consensus 445 -----~n~~lg~~~i~~~~~~~~g~-------~~i~v~f~id~~Gil~v~~~~~---------~t~-------------- 489 (621)
T CHL00094 445 -----DNKSLGTFRLDGIPPAPRGV-------PQIEVTFDIDANGILSVTAKDK---------GTG-------------- 489 (621)
T ss_pred -----CCCEEEEEEEeCCCCCCCCC-------CcEEEEEEECCCCeEEEEEeec---------cCC--------------
Confidence 24568889999998764433 5799999999999999998731 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
+... +.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~~----~~i~----~~~~ls~~~i 507 (621)
T CHL00094 490 ------------------------------------------------------KEQS----ITIQ----GASTLPKDEV 507 (621)
T ss_pred ------------------------------------------------------ceee----eeec----cchhccHHHH
Confidence 0000 1111 2346999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+++++++.+|...|+.++++.+++|.||+|||.+|++|+ ++..++++++|++|.+.++++++|||++ ..+.|++
T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~ 581 (621)
T CHL00094 508 ERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKDKISEEKKEKIENLIKKLRQALQND----NYESIKS 581 (621)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999996 3889999999999999999999999976 4579999
Q ss_pred HHHHHHHhhHHHHHHHH
Q psy18164 995 KLNEINSLVVPIWERHR 1011 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~~ 1011 (1212)
++++|+++++++..+++
T Consensus 582 ~~~~l~~~~~~~~~kl~ 598 (621)
T CHL00094 582 LLEELQKALMEIGKEVY 598 (621)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987543
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=4e-86 Score=815.02 Aligned_cols=577 Identities=24% Similarity=0.338 Sum_probs=508.0
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-CcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
+||||||||||+||++.+| .++++.|..|+|.+||+|+|.+ +++++|..|+.++.++|.++++++|||||+.+++..
T Consensus 1 ~iGIDlGTtns~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSG-VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK- 78 (599)
T ss_pred CEEEEEccccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh-
Confidence 5899999999999999998 6789999999999999999975 489999999999999999999999999999987743
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 443 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~ 443 (1212)
. .+.+||..... .++.+.+...++ .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 79 -~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 -T-FSILPYRFVDG--PGEMVRLRTVQG-TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred -h-cccCCEEEEEc--CCCceEEEeCCC-EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 56678864432 235567766554 799999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCC
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 523 (1212)
+|||++++||+||+|||++|++.+.. ++++|||||||||||+||+++. .+.++|++++++..
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGgGT~DvSi~~~~------------~~~~~vla~~gd~~ 215 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKAS------EGIYAVYDLGGGTFDVSILKLT------------KGVFEVLATGGDSA 215 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccCC------CCEEEEEEcCCCeEEEEEEEEc------------CCeEEEEEEcCCCC
Confidence 99999999999999999999976532 6889999999999999999986 34799999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHH
Q psy18164 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEAL 603 (1212)
Q Consensus 524 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l 603 (1212)
+||++||.+|++|+.++++. +...+++++.+|+.+||++|+.||.+.++.+.++. ++.++.++|||++|+++
T Consensus 216 lGG~d~D~~l~~~l~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l 287 (599)
T TIGR01991 216 LGGDDFDHALAKWILKQLGI------SADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEAL 287 (599)
T ss_pred CCHHHHHHHHHHHHHHhhCC------CCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHH
Confidence 99999999999999987643 44568999999999999999999999998888874 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCccc
Q psy18164 604 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKV 683 (1212)
Q Consensus 604 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~fkv 683 (1212)
|+|+++++..+|+++|+++++...+|+.|+||||+||+|+||+.|+++||..+..++|||+|||+|||++|+++++.++.
T Consensus 288 ~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~ 367 (599)
T TIGR01991 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIG 367 (599)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999988
Q ss_pred ceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccC
Q psy18164 684 KKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLG 760 (1212)
Q Consensus 684 ~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~ 760 (1212)
+++.+.|++||+|||++. ++ .+.+||++|+++|++++..|++..++ +.|.||+| +..... .
T Consensus 368 ~~~~l~dv~p~slgi~~~-----~g---~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qG-e~~~~~-------~ 431 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETM-----GG---LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQG-ERELVE-------D 431 (599)
T ss_pred CceEEEEeeeeeeEEEec-----CC---EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEee-cccccc-------c
Confidence 999999999999999986 22 36799999999999999999876454 89999999 754322 3
Q ss_pred ceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCC
Q psy18164 761 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 840 (1212)
Q Consensus 761 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~ 840 (1212)
+..|+++.|.|+++++++. ++|+|+|++|.||+|+|++.+. .|.
T Consensus 432 n~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~V~a~~~---------~t~-------------------- 475 (599)
T TIGR01991 432 CRSLARFELRGIPPMVAGA-------ARIRVTFQVDADGLLTVSAQEQ---------STG-------------------- 475 (599)
T ss_pred CceEEEEEEcCCCCCCCCC-------CcEEEEEEECCCCeEEEEEEEC---------CCC--------------------
Confidence 5568899999999875443 6899999999999999998630 000
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHH
Q psy18164 841 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 920 (1212)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~ 920 (1212)
++.. +.+. ....|+.++++++.+.
T Consensus 476 ------------------------------------------------~~~~----~~i~----~~~~l~~~~i~~~~~~ 499 (599)
T TIGR01991 476 ------------------------------------------------VEQS----IQVK----PSYGLSDEEIERMLKD 499 (599)
T ss_pred ------------------------------------------------cEEE----Eecc----cccCCCHHHHHHHHHH
Confidence 0001 1111 2235999999999999
Q ss_pred HHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy18164 921 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEIN 1000 (1212)
Q Consensus 921 l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~ 1000 (1212)
+.++...|+.++++.+++|.+|+|+|.++..+. ++...+++++|+++...++++++||+++ +.+.+++++++|+
T Consensus 500 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~ 573 (599)
T TIGR01991 500 SFKHAEEDMYARALAEQKVEAERILEALQAALA--ADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALE 573 (599)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999884 3556899999999999999999999964 5689999999999
Q ss_pred HhhHHHHH
Q psy18164 1001 SLVVPIWE 1008 (1212)
Q Consensus 1001 ~~~~pi~~ 1008 (1212)
++.+++..
T Consensus 574 ~~~~~~~~ 581 (599)
T TIGR01991 574 EATDNFAA 581 (599)
T ss_pred HHHHHHHH
Confidence 99998875
No 14
>KOG0101|consensus
Probab=100.00 E-value=1.5e-87 Score=785.14 Aligned_cols=605 Identities=30% Similarity=0.456 Sum_probs=546.0
Q ss_pred ccCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCC
Q psy18164 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 359 (1212)
Q Consensus 280 ~~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~ 359 (1212)
...+.++|||||||+++|+++..| .++++.|.+|+|.|||+|+|.++++++|..|..+..++|.|+++++||++|+.++
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred ccccceeeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 345788999999999999999977 8899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHH
Q psy18164 360 SPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 438 (1212)
Q Consensus 360 ~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al 438 (1212)
||.++..+++|||......+....+.....+ .+.++|+++.+|+|.+++..|+.+++..+.++|+|||+||+..||+++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 9999999999999877555555566655544 378999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEE
Q psy18164 439 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518 (1212)
Q Consensus 439 ~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 518 (1212)
.+|+.+|||+++++|+||+||||+|++.+.. .. ..+|||+|+||||||+|++.+. .+.+.++++
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~---~~-~~~VlI~DlGggtfdvs~l~i~------------gG~~~vkat 226 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKV---LG-ERNVLIFDLGGGTFDVSVLSLE------------GGIFEVKAT 226 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccc---cc-eeeEEEEEcCCCceeeeeEEec------------cchhhhhhh
Confidence 9999999999999999999999999976652 12 7899999999999999999986 237899999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHH
Q psy18164 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRA 598 (1212)
Q Consensus 519 ~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~ 598 (1212)
.+|.++||.+||+.|++|++.+|+. +++.++..|+|+++||+.+||++|+.||....+++.|++|+++.||...|||.
T Consensus 227 ~gd~~lGGedf~~~l~~h~~~ef~~--k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itra 304 (620)
T KOG0101|consen 227 AGDTHLGGEDFDNKLVNHFAAEFKR--KAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRA 304 (620)
T ss_pred cccccccchhhhHHHHHHHHHHHHH--hhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehh
Confidence 9999999999999999999999999 66679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHhh
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
+||++|.+++.++..+++.+|++++++..+|+.|+||||+||+|.+|..|+++|+ +++..++||||+||+|||+|||.+
T Consensus 305 rfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 305 RFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred cCC--cccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCC
Q psy18164 678 STG--FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLN 752 (1212)
Q Consensus 678 s~~--fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~ 752 (1212)
++. -.+.++.+.|+.|.++||+.. ++ .+.+||++++.+|.+++.+|+++.++ +.|.||+| ++....
T Consensus 385 ~g~~~~~~~~l~lid~~pl~~gve~a-----~~---~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEg-er~~~k 455 (620)
T KOG0101|consen 385 SGDKSLNIQDLLLIDVAPLSLGVETA-----GG---VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEG-ERAMTK 455 (620)
T ss_pred cCCccccccceeeeeccccccccccc-----CC---cceeeeecccccceeeeeeeeeecCCCCceeEEEEec-cccccc
Confidence 973 245889999999999999876 43 37899999999999999999998665 89999999 754322
Q ss_pred hhhhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCcccccccccccccc
Q psy18164 753 PEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFS 832 (1212)
Q Consensus 753 ~~~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~ 832 (1212)
++ ..++.|.+.|+++++++. +.|+++|.+|.+|+|.|++++ .+|.+
T Consensus 456 --dn-----~~lg~feL~gippaprgv-------p~IevtfdiD~ngiL~Vta~d---------~stgK----------- 501 (620)
T KOG0101|consen 456 --DN-----NLLGKFELTGIPPAPRGV-------PQIEVTFDIDANGILNVTAVD---------KSTGK----------- 501 (620)
T ss_pred --cc-----cccceeeecCCCccccCC-------cceeEEEecCCCcEEEEeecc---------ccCCc-----------
Confidence 33 345788999999998887 799999999999999999984 11110
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHH
Q psy18164 833 RSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEK 912 (1212)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~e 912 (1212)
. .+ | + ..++...||.+
T Consensus 502 ------------------------------------------------------~-~~------i--~-i~n~~grls~~ 517 (620)
T KOG0101|consen 502 ------------------------------------------------------E-NK------I--T-ITNDKGRLSKE 517 (620)
T ss_pred ------------------------------------------------------c-ce------E--E-Eecccceeehh
Confidence 0 00 1 1 23456779999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy18164 913 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 992 (1212)
Q Consensus 913 el~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~ 992 (1212)
+|+++....+....+|...+.+-+++|.||+|+|.++..++++. ..+.++++.++..+|.++..||+- ...+.+++|
T Consensus 518 ~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~--~~i~~~~~~~~~~~~~~~i~wl~~-~~~~~~~e~ 594 (620)
T KOG0101|consen 518 EIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK--GKINEEDKQKILDKCNEVINWLDK-NQLAEKEEF 594 (620)
T ss_pred hhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc--cccChhhhhhHHHHHHHHHHHhhh-cccccccHH
Confidence 99999999999999999999999999999999999999997544 899999999999999999999985 456679999
Q ss_pred HHHHHHHHHhhHHHHHHHHhh
Q psy18164 993 ENKLNEINSLVVPIWERHREH 1013 (1212)
Q Consensus 993 ~~Kl~eL~~~~~pi~~R~~e~ 1013 (1212)
++|.++|+..|+||..+++..
T Consensus 595 e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 595 EHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHhhccHHHHhhhcc
Confidence 999999999999999987654
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.5e-86 Score=830.74 Aligned_cols=594 Identities=34% Similarity=0.532 Sum_probs=516.0
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHHH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ 364 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v~ 364 (1212)
||||||||+||+||++.+| .++++.|..|+|++||+|+|.+++++||..|.....++|+++++++|||||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 7999999999999999998 789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHH
Q psy18164 365 LFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 443 (1212)
Q Consensus 365 ~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~ 443 (1212)
.+.+.+||......++...+.+...+ ...++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999766554444444444433 36899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCC
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 523 (1212)
+|||++++||+||+|||++|++.+.. . ++++|||||||||+|+|++++. .+.++++++.++..
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~----~-~~~vlv~D~Gggt~dvs~~~~~------------~~~~~v~~~~~~~~ 222 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD----K-GKTVLVVDFGGGTFDVSVVEFS------------NGQFEVLATAGDNN 222 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS----S-EEEEEEEEEESSEEEEEEEEEE------------TTEEEEEEEEEETT
T ss_pred ccccccceeecccccccccccccccc----c-ccceeccccccceEeeeehhcc------------cccccccccccccc
Confidence 99999999999999999999887665 2 7999999999999999999987 34899999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccC--CceeEEEEeeccc-CcceEEEEeHHHH
Q psy18164 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA--NNEHFAQIEGLID-EIDFKLLVTRAEF 600 (1212)
Q Consensus 524 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~--n~~~~i~ie~l~~-~~d~~~~itR~ef 600 (1212)
+||++||.+|++|+.++|+. +.+.++..+++++.+|+.+||++|+.||. +.++.+.++++++ |.|+.+.|||++|
T Consensus 223 lGG~~~D~~l~~~~~~~~~~--~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~f 300 (602)
T PF00012_consen 223 LGGRDFDEALAEYLLEKFKK--KYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEF 300 (602)
T ss_dssp CSHHHHHHHHHHHHHHHHHH--HHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred cccceecceeeccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 99999999999999999998 44558888999999999999999999999 7778888999888 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 601 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 601 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
+++|+|+++++..+|+++|++++++..+|+.|+||||+||+|+||+.|++.||..+..++|||+|||+|||++|+.+++.
T Consensus 301 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 380 (602)
T PF00012_consen 301 EELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGS 380 (602)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTS
T ss_pred cccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChhhhh
Q psy18164 681 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIA 757 (1212)
Q Consensus 681 fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~ 757 (1212)
|+++++.+.|++||+|||.+. ++ .+.+++++|+++|..+...|.+..+ +|.|.|||| +....+
T Consensus 381 ~~~~~~~~~d~~~~~~~i~~~----~~----~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g-~~~~~~----- 446 (602)
T PF00012_consen 381 FRVKDIKIIDVTPFSIGIEVS----NG----KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEG-ESSSFE----- 446 (602)
T ss_dssp CSSTSSCESEBESSEEEEEET----TT----EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEES-SSSBGG-----
T ss_pred ccccccccccccccccccccc----cc----ccccccccccccccccccccchhccccccccceeeec-cccccc-----
Confidence 999999999999999999886 23 2678999999999998888876533 499999999 654322
Q ss_pred ccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCC
Q psy18164 758 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTD 837 (1212)
Q Consensus 758 ~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~ 837 (1212)
.+..|+++.|.++++.+++ .+.|+++|++|.+|+|+|..+++..+.
T Consensus 447 --~~~~ig~~~i~~i~~~~~g-------~~~i~v~f~ld~~Gil~V~~~~~~~~~------------------------- 492 (602)
T PF00012_consen 447 --DNKKIGSYTISGIPPAPKG-------KPKIKVTFELDENGILSVEAAEVETGK------------------------- 492 (602)
T ss_dssp --GSEEEEEEEEES-SSSSTT-------SSEEEEEEEEETTSEEEEEEEETTTTE-------------------------
T ss_pred --ccccccccccccccccccc-------ccceeeEEeeeeeeehhhhhccccccc-------------------------
Confidence 2467889999999876443 368999999999999999998521000
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHH
Q psy18164 838 ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKS 917 (1212)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~ 917 (1212)
... +. ......++.++++.+
T Consensus 493 ----------------------------------------------------~~~----~~----v~~~~~~~~~~~~~~ 512 (602)
T PF00012_consen 493 ----------------------------------------------------EEE----VT----VKKKETLSKEEIEEL 512 (602)
T ss_dssp ----------------------------------------------------EEE----EE----EESSSSSCHHHHHHH
T ss_pred ----------------------------------------------------ccc----cc----ccccccccccccccc
Confidence 000 00 011123889999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy18164 918 LSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLN 997 (1212)
Q Consensus 918 ~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~ 997 (1212)
++++.++...|+.++++.+++|.||+|+|++|++|++. ..+++++++ .+.++++.+||+++.++++.++|++|++
T Consensus 513 ~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~ 587 (602)
T PF00012_consen 513 KKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLE 587 (602)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999744 667777766 8899999999999988999999999999
Q ss_pred HHHHhhHHHHHHHH
Q psy18164 998 EINSLVVPIWERHR 1011 (1212)
Q Consensus 998 eL~~~~~pi~~R~~ 1011 (1212)
+|+++.+||..|++
T Consensus 588 ~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 588 ELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999985
No 16
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5.6e-85 Score=806.13 Aligned_cols=577 Identities=23% Similarity=0.342 Sum_probs=504.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
..+||||||||||+||++.+| .++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++|||||+.+++
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSG-QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECC-EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 358999999999999999999 56899999999999999999888899999999999999999999999999999876
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++.....+||...... .+.+.+...++ .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 96 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~-~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 96 IQQRYPHLPYQFVASE--NGMPLIRTAQG-LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhhcCCeEEEecC--CCceEEEecCC-eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 4445566787544332 35566666553 79999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..+.. ++++||||+||||||+||+++. .+.++|++++||.
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGGGT~DvSv~~~~------------~~~~evlat~gd~ 234 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSGQ------EGVIAVYDLGGGTFDISILRLS------------KGVFEVLATGGDS 234 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccCC------CCEEEEEECCCCeEEEEEEEee------------CCEEEEEEecCCC
Confidence 999999999999999999999875432 6889999999999999999986 3479999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 602 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~ 602 (1212)
++||++||.+|++|+.++|+. +...+++++.+|+.+||++|+.||.+.++.+.+.. +...|||++|++
T Consensus 235 ~lGG~d~D~~l~~~~~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~------~~~~itr~efe~ 302 (616)
T PRK05183 235 ALGGDDFDHLLADWILEQAGL------SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL------WQGEITREQFNA 302 (616)
T ss_pred CcCHHHHHHHHHHHHHHHcCC------CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec------CCCeEcHHHHHH
Confidence 999999999999999998864 33468999999999999999999999998888853 223599999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCcc
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFK 682 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~fk 682 (1212)
+|+|+++++..+|+++|+++++...+|+.|+||||+||+|+||+.|+++||..+..++|||+|||+|||++|+++++.++
T Consensus 303 l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~ 382 (616)
T PRK05183 303 LIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKP 382 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999987788999999999999999999999888
Q ss_pred cceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChhhhhcc
Q psy18164 683 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIAML 759 (1212)
Q Consensus 683 v~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~~~ 759 (1212)
++++.+.|++||+|||++. ++ .+.+||++|+++|++++..|++..+ .+.|.||+| +.....
T Consensus 383 ~~~~~l~dv~p~slgi~~~-----~g---~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qG-e~~~~~------- 446 (616)
T PRK05183 383 DSDMLLLDVIPLSLGLETM-----GG---LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQG-ERELVA------- 446 (616)
T ss_pred cCceEEEeeccccccceec-----CC---eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecc-cccccc-------
Confidence 8999999999999999976 22 3678999999999999999987644 389999999 765322
Q ss_pred CceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCC
Q psy18164 760 GTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDEN 839 (1212)
Q Consensus 760 ~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~ 839 (1212)
.+..|+++.|.|+++++++. ..|+|+|++|.||+|+|++.+. .+.
T Consensus 447 ~n~~lg~~~i~~i~~~~~g~-------~~i~v~f~~d~~Gil~V~a~~~---------~~~------------------- 491 (616)
T PRK05183 447 DCRSLARFELRGIPPMAAGA-------ARIRVTFQVDADGLLSVTAMEK---------STG------------------- 491 (616)
T ss_pred cccEEEEEEeCCCCCCCCCC-------ccEEEEEEECCCCeEEEEEEEc---------CCC-------------------
Confidence 34568899999999875443 6899999999999999997631 000
Q ss_pred CCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHH
Q psy18164 840 EKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLS 919 (1212)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~ 919 (1212)
+... +.+. ....|+.++++++.+
T Consensus 492 -------------------------------------------------~~~~----~~i~----~~~~ls~~~i~~~~~ 514 (616)
T PRK05183 492 -------------------------------------------------VEAS----IQVK----PSYGLTDDEIARMLK 514 (616)
T ss_pred -------------------------------------------------cEEE----eccc----ccccCCHHHHHHHHH
Confidence 0000 1111 123599999999999
Q ss_pred HHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy18164 920 KLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEI 999 (1212)
Q Consensus 920 ~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL 999 (1212)
.+.++...|+..+++.+++|++|+|+|.++.++.+ ....+++++|+++...++++++||..+ +.+.|++++++|
T Consensus 515 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l 588 (616)
T PRK05183 515 DSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKAL 588 (616)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Confidence 99999999999999999999999999999999953 346789999999999999999999743 678999999999
Q ss_pred HHhhHHHHHH
Q psy18164 1000 NSLVVPIWER 1009 (1212)
Q Consensus 1000 ~~~~~pi~~R 1009 (1212)
+++++++..+
T Consensus 589 ~~~~~~~~~~ 598 (616)
T PRK05183 589 DKATQEFAAR 598 (616)
T ss_pred HHHHHHHHHH
Confidence 9999999873
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.6e-79 Score=750.28 Aligned_cols=546 Identities=21% Similarity=0.344 Sum_probs=462.2
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCC---
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS--- 360 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~--- 360 (1212)
.+||||||||||+||++.+| .++|+.|..|+|.+||+|+|.++++++|..| +++++|||||+.+++
T Consensus 20 ~viGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 58999999999999999887 7899999999999999999988889999987 799999999999876
Q ss_pred -HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHH
Q psy18164 361 -PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 361 -~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~ 439 (1212)
+.+....+++ +.. ..+.+.+..++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||++++
T Consensus 89 ~~~~~~~~k~~----~~~--~~~~~~~~~~~-~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 89 TPALFSLVKDY----LDV--NSSELKLNFAN-KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred chhhHhhhhhe----eec--CCCeeEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 2221111111 111 12334555554 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEe
Q psy18164 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519 (1212)
Q Consensus 440 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 519 (1212)
+||++|||++++||+||+|||++|+..... ..++||||+||||||+||+++. .+.++|++++
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGGGT~DvSi~~~~------------~~~~~V~at~ 223 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ------KGCYLVYDLGGGTFDVSILNIQ------------EGIFQVIATN 223 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccCC------CCEEEEEECCCCcEEEEEEEEe------------CCeEEEEEEc
Confidence 999999999999999999999999986432 5789999999999999999986 3479999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHH
Q psy18164 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 599 (1212)
Q Consensus 520 ~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~e 599 (1212)
||..+||++||.+|++|++++|.. ..+.+ .++.||++|+.||.+..... ..++|||++
T Consensus 224 gd~~lGG~d~D~~l~~~~~~~~~~--------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~e 281 (595)
T PRK01433 224 GDNMLGGNDIDVVITQYLCNKFDL--------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQT 281 (595)
T ss_pred CCcccChHHHHHHHHHHHHHhcCC--------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHH
Confidence 999999999999999999998853 12222 23459999999998875321 178999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
||++|+|+++++..+|+++|++++ ..+|+.|+||||+||+|+||+.|+++||.++..++|||+|||+|||++|+.+++
T Consensus 282 fe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 282 LEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998 678999999999999999999999999988888999999999999999999987
Q ss_pred CcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhh
Q psy18164 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQI 756 (1212)
Q Consensus 680 ~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~ 756 (1212)
.+ +++.+.|++||+|||++. ++ .+.+||++|+++|.+++..|++..++ +.|.||+| +.....
T Consensus 360 ~~--~~~~l~Dv~p~slgi~~~-----~g---~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qG-e~~~~~---- 424 (595)
T PRK01433 360 PH--TNSLLIDVVPLSLGMELY-----GG---IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQG-EREMAA---- 424 (595)
T ss_pred Cc--cceEEEEecccceEEEec-----CC---EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEec-cccccC----
Confidence 63 578999999999999986 33 36799999999999999999876443 89999999 765332
Q ss_pred hccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCC
Q psy18164 757 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 836 (1212)
Q Consensus 757 ~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~ 836 (1212)
.+..|++|.|.|+++++++. ++|+|+|++|.||+|+|++.+. .|.
T Consensus 425 ---~n~~lg~~~l~~i~~~~~g~-------~~i~vtf~id~~Gil~V~a~~~---------~t~---------------- 469 (595)
T PRK01433 425 ---DCRSLARFELKGLPPMKAGS-------IRAEVTFAIDADGILSVSAYEK---------ISN---------------- 469 (595)
T ss_pred ---CCcEEEEEEEcCCCCCCCCC-------ccEEEEEEECCCCcEEEEEEEc---------CCC----------------
Confidence 35568899999999875543 6899999999999999998841 000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHH
Q psy18164 837 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 916 (1212)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~ 916 (1212)
+... +.+. ....|+.+++++
T Consensus 470 ----------------------------------------------------~~~~----~~i~----~~~~ls~~ei~~ 489 (595)
T PRK01433 470 ----------------------------------------------------TSHA----IEVK----PNHGIDKTEIDI 489 (595)
T ss_pred ----------------------------------------------------cEEE----EEec----CCCCCCHHHHHH
Confidence 0001 1111 123599999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy18164 917 SLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 996 (1212)
Q Consensus 917 ~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl 996 (1212)
+.+.+.++...|..++++.+++|.+|+++|.++..+. ++...+++++|+++...+++.++||..+ +...+++++
T Consensus 490 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~ 563 (595)
T PRK01433 490 MLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIA--ELTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSI 563 (595)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999994 3666789999999999999999999743 667888888
Q ss_pred HHHHHhhHH
Q psy18164 997 NEINSLVVP 1005 (1212)
Q Consensus 997 ~eL~~~~~p 1005 (1212)
++|+....+
T Consensus 564 ~~~~~~~~~ 572 (595)
T PRK01433 564 KEFKSKIKK 572 (595)
T ss_pred HHHHHHHHH
Confidence 888888887
No 18
>KOG0102|consensus
Probab=100.00 E-value=1.1e-81 Score=702.07 Aligned_cols=594 Identities=26% Similarity=0.396 Sum_probs=528.8
Q ss_pred ccCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEE-ecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCC
Q psy18164 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 358 (1212)
Q Consensus 280 ~~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f-~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~ 358 (1212)
...-+|+|||+||+||+++++.+++| .++.|.+|.|.+||+|+| .++++++|..|+.++..||.|++++-||||||.|
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~-kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf 102 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKP-KIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRF 102 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCc-eEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhc
Confidence 34567999999999999999998844 599999999999999999 6779999999999999999999999999999999
Q ss_pred CCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHH
Q psy18164 359 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 438 (1212)
Q Consensus 359 ~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al 438 (1212)
+||.++.+.+..||..+. ..++-..+.. .+..|+|.++.+++|.+++..|+.+++.++..+|+|||+||++.||+++
T Consensus 103 ~d~evq~~~k~vpyKiVk--~~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaT 179 (640)
T KOG0102|consen 103 DDPEVQKDIKQVPYKIVK--ASNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQAT 179 (640)
T ss_pred cCHHHHHHHHhCCcceEE--ccCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHh
Confidence 999999999999998776 3466677777 6689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEE
Q psy18164 439 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518 (1212)
Q Consensus 439 ~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 518 (1212)
++|.++||+++++.||||||||++|++.+.. ...++|||+||||||++|+.+. ++.++|.++
T Consensus 180 kdag~iagl~vlrvineptaaalaygld~k~------~g~iaV~dLgggtfdisilei~------------~gvfevksT 241 (640)
T KOG0102|consen 180 KDAGQIAGLNVLRVINEPTAAALAYGLDKKE------DGVIAVFDLGGGTFDISILEIE------------DGVFEVKST 241 (640)
T ss_pred HhhhhhccceeeccCCccchhHHhhcccccC------CCceEEEEcCCceeeeeeehhc------------cceeEEEec
Confidence 9999999999999999999999999997654 5789999999999999999986 458999999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEE
Q psy18164 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLL 594 (1212)
Q Consensus 519 ~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~ 594 (1212)
.+|.++||.+||..+++|+...|+. ..+.|+..+.+++.||+.++||+|..||....+.+.++.+..| ..++++
T Consensus 242 ngdtflggedfd~~~~~~~v~~fk~--~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~ 319 (640)
T KOG0102|consen 242 NGDTHLGGEDFDNALVRFIVSEFKK--EEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIE 319 (640)
T ss_pred cCccccChhHHHHHHHHHHHHhhhc--ccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEe
Confidence 9999999999999999999999988 7778999999999999999999999999999999998877655 789999
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 595 VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 595 itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+||.+||+++.++++|.+.|++++|++|++..+||+.|+||||++|+|+|++.+.+.||+..+..+||||+||.|||+++
T Consensus 320 ~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqg 399 (640)
T KOG0102|consen 320 LTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQG 399 (640)
T ss_pred ecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccC
Q psy18164 675 ADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHL 751 (1212)
Q Consensus 675 a~ls~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~ 751 (1212)
..+++. |+++.+.|+.|.++||+.. |+. ++.|+++++.+|.+++..|.+..+. +.+.|++| +++..
T Consensus 400 gvl~ge--VkdvlLLdVtpLsLgietl-----ggv---ft~Li~rnttIptkksqvfstaadgqt~V~ikv~qg-ere~~ 468 (640)
T KOG0102|consen 400 GVLSGE--VKDVLLLDVTPLSLGIETL-----GGV---FTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQG-EREMV 468 (640)
T ss_pred chhhcc--ccceeeeecchHHHHHHhh-----hhh---heecccCCcccCchhhhheeecccCCceEEEEeeec-hhhhh
Confidence 999986 9999999999999999877 443 7889999999999999999987443 89999999 87644
Q ss_pred ChhhhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccc
Q psy18164 752 NPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLF 831 (1212)
Q Consensus 752 ~~~~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f 831 (1212)
. + +..|+.|.+.|+++++++. ++|.|+|.+|.+||++|++.+ +.|.
T Consensus 469 ~--d-----nk~lG~f~l~gipp~pRgv-------pqieVtfDIdanGI~~vsA~d---------k~t~----------- 514 (640)
T KOG0102|consen 469 N--D-----NKLLGSFILQGIPPAPRGV-------PQIEVTFDIDANGIGTVSAKD---------KGTG----------- 514 (640)
T ss_pred c--c-----CcccceeeecccCCCCCCC-------CceeEEEeecCCceeeeehhh---------cccC-----------
Confidence 3 3 4445677999999999988 799999999999999999873 1100
Q ss_pred cCCCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCH
Q psy18164 832 SRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNE 911 (1212)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~ 911 (1212)
|.+- +. ......||+
T Consensus 515 -------------------------------------------------------K~qs------i~----i~~sggLs~ 529 (640)
T KOG0102|consen 515 -------------------------------------------------------KSQS------IT----IASSGGLSK 529 (640)
T ss_pred -------------------------------------------------------Cccc------eE----EeecCCCCH
Confidence 0000 11 123456999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q psy18164 912 KQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADV 991 (1212)
Q Consensus 912 eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~ 991 (1212)
++++.+++..+.+...|+.++++-+..|..|+++|+....+ .+|.+..+.++.++|+..+....+.+-.- ...+.+.
T Consensus 530 ~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~--~~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~ 606 (640)
T KOG0102|consen 530 DEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSL--KEFEEKIPAEECEKLEEKISDLRELVANK-DSGDMEE 606 (640)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhh--hhhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhh
Confidence 99999999999999999999999999999999999999888 56888888888889999999888888421 1222366
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q psy18164 992 LENKLNEINSLVVPIWERH 1010 (1212)
Q Consensus 992 ~~~Kl~eL~~~~~pi~~R~ 1010 (1212)
...+...|+...-|++.-+
T Consensus 607 ~k~~~~~l~q~~lkl~es~ 625 (640)
T KOG0102|consen 607 IKKAMSALQQASLKLFESA 625 (640)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 7777777777666666533
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-78 Score=733.47 Aligned_cols=570 Identities=30% Similarity=0.413 Sum_probs=508.0
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC-cEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~-~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
+.+||||||||||+||++++|..+.++.|..|.|.+||+|+|..+ ++++|..|+.++..+|.+|++.+||++|+.-.
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~-- 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN-- 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC--
Confidence 468999999999999999987456799999999999999999755 69999999999999999999999999998610
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
.....+.+++ +.++|+++++++|+++++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 83 -------------------~~~~~~~~~~-~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -------------------GLKISVEVDG-KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -------------------CCcceeeeCC-eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 0112333443 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
|++|||++++|+|||+|||++|+..... +.+|||||+||||||+||+++. .+.++|+++++|
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~~------~~~vlV~DlGGGTfDvSll~~~------------~g~~ev~at~gd 204 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKGK------EKTVLVYDLGGGTFDVSLLEIG------------DGVFEVLATGGD 204 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccCC------CcEEEEEEcCCCCEEEEEEEEc------------CCEEEEeecCCC
Confidence 9999999999999999999999997762 7899999999999999999986 238999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFE 601 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe 601 (1212)
..|||++||.+|.+|+..+|.. +.+.|+..++++++||+.+||++|+.||++.++.+.++.+..+.++..+|||++||
T Consensus 205 ~~LGGddfD~~l~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E 282 (579)
T COG0443 205 NHLGGDDFDNALIDYLVMEFKG--KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFE 282 (579)
T ss_pred cccCchhHHHHHHHHHHHHhhc--cCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHH
Confidence 9999999999999999999998 55579999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 602 ALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 602 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
+++.+++.++..+++++|.++++...+|+.|+||||+||||.|++.|+++||+++..++||||+||+|||++|+.+++..
T Consensus 283 ~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~ 362 (579)
T COG0443 283 ELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEV 362 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhc
Q psy18164 682 KVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAM 758 (1212)
Q Consensus 682 kv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~ 758 (1212)
+ ++.+.|++|+++|+++. ++ .+..++++++.+|.++...|.+..++ +.+.+++| +.....
T Consensus 363 ~--d~ll~Dv~plslgie~~-----~~---~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qg-e~~~~~------ 425 (579)
T COG0443 363 P--DVLLLDVIPLSLGIETL-----GG---VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQG-EREMAA------ 425 (579)
T ss_pred c--CceEEeeeeeccccccC-----cc---hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEec-chhhcc------
Confidence 5 89999999999999887 32 36789999999999999999887554 88999999 765332
Q ss_pred cCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCC
Q psy18164 759 LGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDE 838 (1212)
Q Consensus 759 ~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~ 838 (1212)
.+..++.|.+.|+++++++. +.|+++|.+|.||++.|++.+. .+.
T Consensus 426 -~~~~lg~f~l~~i~~~~~g~-------~~i~v~f~iD~~gi~~v~a~~~---------~~~------------------ 470 (579)
T COG0443 426 -DNKSLGRFELDGIPPAPRGV-------PQIEVTFDIDANGILNVTAKDL---------GTG------------------ 470 (579)
T ss_pred -cCceeEEEECCCCCCCCCCC-------CceEEEeccCCCcceEeeeecc---------cCC------------------
Confidence 35668899999999998777 6799999999999999988631 000
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHH
Q psy18164 839 NEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSL 918 (1212)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~ 918 (1212)
+... +.+ .....|++++++.+.
T Consensus 471 ------------------------------------------------k~~~------i~i----~~~~~ls~~~i~~~~ 492 (579)
T COG0443 471 ------------------------------------------------KEQS------ITI----KASSGLSDEEIERMV 492 (579)
T ss_pred ------------------------------------------------ceEE------EEE----ecCCCCCHHHHHHHH
Confidence 0000 111 122349999999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q psy18164 919 SKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNE 998 (1212)
Q Consensus 919 ~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~e 998 (1212)
+....+...|+..++..+.+|..++++|.++..|.+.. .+.+++++.+...+.++++||+. + .++++.+.++
T Consensus 493 ~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~~ 564 (579)
T COG0443 493 EDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV---KVSEEEKEKIEEAITDLEEALEG--E---KEEIKAKIEE 564 (579)
T ss_pred HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc---cCCHHHHHHHHHHHHHHHHHHhc--c---HHHHHHHHHH
Confidence 99999999999999999999999999999999996432 89999999999999999999996 1 8899999999
Q ss_pred HHHhhHHHHHHHHh
Q psy18164 999 INSLVVPIWERHRE 1012 (1212)
Q Consensus 999 L~~~~~pi~~R~~e 1012 (1212)
|+....++..++.+
T Consensus 565 l~~~~~~~~~~~~~ 578 (579)
T COG0443 565 LQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887653
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=5.5e-52 Score=490.99 Aligned_cols=346 Identities=19% Similarity=0.204 Sum_probs=290.9
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe---------------------------------------
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH--------------------------------------- 325 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~--------------------------------------- 325 (1212)
++|||||||||+||++.+| .++++.+..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~-~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDG-KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCC-ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 5899999999999999988 678999999999999999993
Q ss_pred --cCcEeecHHHHHhhhhCCCch--HhHhHHhcCCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHH
Q psy18164 326 --KGERTFGEDAQIIGTRFPSNS--YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 401 (1212)
Q Consensus 326 --~~~r~~G~~A~~~~~~~p~~t--~~~~k~llG~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a 401 (1212)
++..++|..|......+|.++ +..+|++||...-. .+....++++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~-----------------------------~~~~~~~e~l~a 131 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK-----------------------------PQQVALFEDLVC 131 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC-----------------------------ccceeCHHHHHH
Confidence 456789999999999999999 77999999974110 012234899999
Q ss_pred HHHHHHHHHHHHHcCCccceEEEecCCCCC-----HHHHHH---HHHHHHHcCCCeeeeechhHHHHHhhcccccccCCC
Q psy18164 402 MLLHKAREYASVSAGQVINEAVIIVPGYFN-----QIERQS---MLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNE 473 (1212)
Q Consensus 402 ~~L~~lk~~a~~~~~~~i~~~VItVP~~f~-----~~qR~a---l~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~ 473 (1212)
++|++|++.++.+++.++.++|||||++|+ +.||++ |++||++|||++++|++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999998 788776 7999999999999999999999999986432
Q ss_pred CCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHH-HHHHHHHhhc--ccCCCC
Q psy18164 474 TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLR-DFLGKKFNEM--KKTTKD 550 (1212)
Q Consensus 474 ~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~-~~l~~~~~~~--~~~~~d 550 (1212)
. ++++|||||||||+|+||+++.... .+ ......+|++++| ..+||+|||.+|+ +++...|... ++.+.+
T Consensus 207 ~-~~~vlV~D~GGGT~D~Svv~~~~~~---~~--~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~ 279 (450)
T PRK11678 207 E-EKRVLVVDIGGGTTDCSMLLMGPSW---RG--RADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIA 279 (450)
T ss_pred C-CCeEEEEEeCCCeEEEEEEEecCcc---cc--cCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCc
Confidence 2 6889999999999999999986210 00 1133578999998 5799999999998 6888888521 111110
Q ss_pred C-----------------------------------CCCHHHH------------HHHHHHHHHhhhhccCCceeEEEEe
Q psy18164 551 V-----------------------------------FENPRAV------------AKLFKEAGRLKNVLSANNEHFAQIE 583 (1212)
Q Consensus 551 ~-----------------------------------~~~~ra~------------~kL~~~aek~K~~LS~n~~~~i~ie 583 (1212)
+ ..+|+.+ .+|+.+||++|+.||.+.++.+.++
T Consensus 280 ~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~ 359 (450)
T PRK11678 280 LPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLD 359 (450)
T ss_pred CcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEec
Confidence 0 1134444 3788999999999999999999998
Q ss_pred ecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCch
Q psy18164 584 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTD 663 (1212)
Q Consensus 584 ~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~d 663 (1212)
.+. .++..+|||++|+++|+++++++..+|+++|+++++. ++.|+||||+||||.|++.|.+.||.......|+.
T Consensus 360 ~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~ 434 (450)
T PRK11678 360 FIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDF 434 (450)
T ss_pred ccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCc
Confidence 764 4578999999999999999999999999999999976 47899999999999999999999996666678999
Q ss_pred hHHHhhHHHHHHhh
Q psy18164 664 EAAALGAVYKAADL 677 (1212)
Q Consensus 664 eaVA~GAa~~aa~l 677 (1212)
++||.|+|++|..+
T Consensus 435 ~sVa~Gla~~a~~~ 448 (450)
T PRK11678 435 GSVTAGLARWAQVV 448 (450)
T ss_pred chHHHHHHHHHHhh
Confidence 99999999999753
No 21
>KOG0100|consensus
Probab=100.00 E-value=2.6e-46 Score=402.54 Aligned_cols=218 Identities=30% Similarity=0.470 Sum_probs=206.6
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
-+|||||+||||+||+++.+| .++||.|.+|+|.+||+|+|.+.+++||.+|++++..||.|++++.|||||+.++++.
T Consensus 36 gtvigIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 36 GTVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred ceEEEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 479999999999999999999 4899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCC--cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTND--NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
++..+++|||+ ++..+..+.+.+.+.+ .+.++|+++.+|+|.++++.|+.++|..+.++|+||||||++.||+++++
T Consensus 115 vq~Dik~~Pfk-vv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFK-VVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceE-EEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 99999999985 8888899999999864 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccch
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMK 260 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~ 260 (1212)
|..+||++++++|+||+|||++|++.+... ++++||||+||||||||++.+.+|...++.++
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~g-----EknilVfDLGGGTFDVSlLtIdnGVFeVlaTn 255 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDG-----EKNILVFDLGGGTFDVSLLTIDNGVFEVLATN 255 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCC-----cceEEEEEcCCceEEEEEEEEcCceEEEEecC
Confidence 999999999999999999999999977653 57999999999999999999999999887654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=5.8e-36 Score=347.27 Aligned_cols=308 Identities=19% Similarity=0.266 Sum_probs=239.0
Q ss_pred EEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC--c-EeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~--~-r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
+||||||++++|+....| .++. +||+|+|... . ..+|.+|..++.+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------------- 62 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE-------------
Confidence 799999999999887443 2332 5999999743 2 369999988776666553210
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
.| +.++ .+...++...+|+++.+.+..........+|||||++|++.||+++.+|+
T Consensus 63 -------~p----------------i~~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 -------RP----------------LRDG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -------cc----------------CCCC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 11 1111 23344566777777775543322223347999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
+.||++++.+++||+|||++|+..... +..++|||+||||||+++++.. + + ...++.
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~~------~~~~lVvDiGggttdvsvv~~g-------~-------~---~~~~~~ 175 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDISQ------PSGNMVVDIGGGTTDIAVLSLG-------G-------I---VTSSSI 175 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcccC------CCeEEEEEeCCCeEEEEEEEeC-------C-------E---EEeCCc
Confidence 999999999999999999999874321 5779999999999999999863 1 1 134578
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc----eeEEEEe--ecccCcceEEEEe
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKLLVT 596 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~----~~~i~ie--~l~~~~d~~~~it 596 (1212)
.+||++||..|++++..+|+. .+. ...||++|+.++... ...+.+. .+..+.++.++|+
T Consensus 176 ~lGG~did~~i~~~l~~~~~~------~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~ 240 (336)
T PRK13928 176 KVAGDKFDEAIIRYIRKKYKL------LIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVT 240 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhch------hcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEEC
Confidence 999999999999999988753 111 256899999876431 1233332 3445667789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCcc-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHH
Q psy18164 597 RAEFEALNEDLFDRVGYPVEQALKSSA--VPMDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 597 R~efe~l~~~l~~~i~~~i~~~L~~a~--~~~~~i~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~ 673 (1212)
|++|++++.++++++..+|+++|+.++ +..+.++ .|+|+||+|++|.|++.|++.||.++....||++|||+|||++
T Consensus 241 ~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~ 320 (336)
T PRK13928 241 SEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKM 320 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence 999999999999999999999999986 4556777 7999999999999999999999988888899999999999999
Q ss_pred HHhhc
Q psy18164 674 AADLS 678 (1212)
Q Consensus 674 aa~ls 678 (1212)
+..+.
T Consensus 321 ~~~~~ 325 (336)
T PRK13928 321 LENID 325 (336)
T ss_pred HhchH
Confidence 98753
No 23
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=3e-35 Score=340.16 Aligned_cols=305 Identities=21% Similarity=0.295 Sum_probs=244.1
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCc---EeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGE---RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~---r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+||||||+|++| +.+|++ ++.| .||+|+|+++. .++|.+|+.+..++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~--~~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~--------- 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKG--IILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R--------- 64 (335)
T ss_pred eEEEEcccccEEE--EECCCc--EEec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e---------
Confidence 5899999999985 555655 3555 39999997442 479999999988888775431 1
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccc--eEEEecCCCCCHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVIN--EAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~--~~VItVP~~f~~~qR~al~ 439 (1212)
|. ..+. +..-++++++|++++..++..++..+. .+|||||++|++.||+++.
T Consensus 65 ---------pi----------------~~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 ---------PM----------------KDGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred ---------cC----------------CCCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 11 1111 222378899999999998887776554 7999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEe
Q psy18164 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519 (1212)
Q Consensus 440 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 519 (1212)
+|++.||++++.|++||+|||++|+.... . +..++|||+||||||++++.+. | + + ..
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----~-~~~~lvvDiG~gtt~v~vi~~~-------~-------~--~-~~ 175 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD-----E-PVANVVVDIGGGTTEVAIISFG-------G-------V--V-SC 175 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC-----C-CceEEEEEeCCCeEEEEEEEeC-------C-------E--E-Ee
Confidence 99999999999999999999999976432 2 6789999999999999999864 2 1 1 33
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc----eeEEEEe--ecccCcceEE
Q psy18164 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKL 593 (1212)
Q Consensus 520 ~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~----~~~i~ie--~l~~~~d~~~ 593 (1212)
++..+||++||..|++++.+.|+- .. . ...||++|+.|+... ...+.+. ++..+....+
T Consensus 176 ~~~~~GG~~id~~l~~~l~~~~~~------~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i 240 (335)
T PRK13929 176 HSIRIGGDQLDEDIVSFVRKKYNL------LI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTI 240 (335)
T ss_pred cCcCCHHHHHHHHHHHHHHHHhCc------Cc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEE
Confidence 456899999999999999876643 11 1 257999999998632 2233333 2344556789
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCcc-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhH
Q psy18164 594 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670 (1212)
Q Consensus 594 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~i~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GA 670 (1212)
.|+|++|+++|.+++.++...|.++|+.++.. .+.++ .|+|+||+|++|.+++.|++.||.++....||+++||+||
T Consensus 241 ~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga 320 (335)
T PRK13929 241 TLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGT 320 (335)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHH
Confidence 99999999999999999999999999998643 46677 6999999999999999999999988888899999999999
Q ss_pred HHHH
Q psy18164 671 VYKA 674 (1212)
Q Consensus 671 a~~a 674 (1212)
+..-
T Consensus 321 ~~~~ 324 (335)
T PRK13929 321 GRSL 324 (335)
T ss_pred HHHH
Confidence 9774
No 24
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=371.50 Aligned_cols=214 Identities=28% Similarity=0.418 Sum_probs=192.9
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
..+|||||||||||||++.+| .+++++|..|.+.+||+|+|.++.+++|..|+..+..+|.++++++||+||++++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 469999999999999999887 5789999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++.....+||..+.. .++...+...+++.++|++|.+++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 106 v~~~~~~~p~~vv~~--~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 106 IQKDIKNVPYKIVRA--GNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHhhccCcEEEEEc--CCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 999999999864333 344455555567889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.|||+++++|+||+|||++|+.... .+++||||||||||||+||+++..+...+++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~------~~~~vlV~DlGGGT~DvSil~~~~g~~~V~a 240 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKT------KDSLIAVYDLGGGTFDISVLEIAGGVFEVKA 240 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCC------CCCEEEEEECCCCeEEEEEEEEeCCEEEEEE
Confidence 99999999999999999999997543 2468999999999999999999887766554
No 25
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.7e-35 Score=368.72 Aligned_cols=212 Identities=30% Similarity=0.441 Sum_probs=189.3
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.++||||||||||+||++.+| .+++++|..|.+.+||+|+|. ++.+++|..|+.++..+|.++++++|||||++++++
T Consensus 41 ~~viGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred CcEEEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 369999999999999999876 589999999999999999996 568999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
.++.....+||. ++.. .++.+.+.+ +++.++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++|
T Consensus 120 ~~~~~~~~~p~~-~~~~-~~~~~~~~~-~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 120 ATKKEQKILPYK-IVRA-SNGDAWIEA-QGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHHhhhccCCeE-EEec-CCCceEEEE-CCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 999989999985 3332 334455554 3678999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccc
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 257 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~ 257 (1212)
|+.|||+++++|+||+|||++|+.... .++++|||||||||||+||+++..+...++
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~~------~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~ 253 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDKN------DGKTIAVYDLGGGTFDISILEILGGVFEVK 253 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhccccC------CCcEEEEEeCCCCeEEEEEEEecCCeeEEE
Confidence 999999999999999999999987542 246899999999999999999987665543
No 26
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=366.73 Aligned_cols=219 Identities=30% Similarity=0.487 Sum_probs=194.6
Q ss_pred CceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 35 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 35 ~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.+++||||||||||+||++.+| .+++++|..|++.+||+|+|.++.+++|..|+.++.++|.++++++||+||+.++++
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4678999999999999999887 589999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCC-cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
.++...+.+||..+...++...+.+...+ +..++|++|++++|++|++.|+.++|.++.++|||||++|++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 99999999998644444444555554433 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
||+.|||++++||+||+|||++|++.+... .++++|||||||||||+||+++..+...+++
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~----~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a 222 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGD----GEKNVLIFDLGGGTFDVSLLTIEDGIFEVKA 222 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCC----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEE
Confidence 999999999999999999999999754321 2468999999999999999999877655543
No 27
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-34 Score=358.24 Aligned_cols=211 Identities=31% Similarity=0.465 Sum_probs=184.5
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+||||||||||+||++.+|+ +.+++|..|.+.+||+|+|. ++.+++|..|+.++..+|.++++++||+||+++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGK-PVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCe-EEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 479999999999999999885 56778999999999999996 57899999999999999999999999999999866
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcC-CcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
++.....+||. +..+ .++.+.+.+. .++.++|++|++++|++|++.|+.++|.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~-v~~~-~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYT-IRRN-EQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeE-EEEC-CCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 45556778875 3332 3455555543 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
|+.|||+++++|+||+|||++|+.... .++++||||||||||||||+++..+...+++
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~------~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~a 215 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS------SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKA 215 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC------CCCEEEEEECCCCeEEEEEEEEcCCeEEEEE
Confidence 999999999999999999999987543 2468999999999999999999877655543
No 28
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.9e-34 Score=357.54 Aligned_cols=211 Identities=30% Similarity=0.459 Sum_probs=184.2
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec-CceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~-~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+||||||||||+||++.+|+ +.+++|..|.+.+||+|+|.+ +.+++|..|+.++..+|.++++++|||||++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGK-PIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCE-EEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 489999999999999999885 568899999999999999964 689999999999999999999999999999998864
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
....++||..+.. .++.+.+.+ ++..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||
T Consensus 82 --~~~~~~~~~~v~~--~~~~~~~~i-~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 --EERSRVPYTCVKG--RDDTVNVQI-RGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred --HHhhcCCceEEec--CCCceEEEE-CCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 3467888864433 334444444 36789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.|||+++++|+||+|||++|++.+.. .++++|||||||||||+||+++..+...+++
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~-----~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~a 214 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD-----QEQLILVFDLGGGTFDVSILQLGDGVFEVKA 214 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC-----CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEE
Confidence 999999999999999999999875432 2468999999999999999999877655543
No 29
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=9.6e-33 Score=320.82 Aligned_cols=306 Identities=18% Similarity=0.286 Sum_probs=228.7
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC-c--EeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~-~--r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+||||||++++++.. |.+. ++ .+||+|+|... + .++|++|..+..+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------ 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------ 64 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE------------
Confidence 5899999999998544 4333 32 28999999643 2 489999998876666553210
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
+| +..+..... +.+..+|+++......... .-..+|||||++|++.||+++++|
T Consensus 65 --------~p----------------i~~G~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 65 --------RP----------------MKDGVIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred --------ec----------------CCCCeecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 11 111211112 2233444444433322221 123799999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
++.||++.+.+++||+|||++|+..... +..++|||+||||||++++++. | + ...++
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~~------~~~~lvvDiGggttdvs~v~~~-------~-------~---~~~~~ 175 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVTE------PTGSMVVDIGGGTTEVAVISLG-------G-------I---VYSKS 175 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCcccC------CCeEEEEEeCCCeEEEEEEecC-------C-------e---EeeCC
Confidence 9999999999999999999999874322 5678999999999999999864 3 1 12345
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce----eEEEE--eecccCcceEEEE
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE----HFAQI--EGLIDEIDFKLLV 595 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~----~~i~i--e~l~~~~d~~~~i 595 (1212)
..+||++||..|.+++.++|.. .. + ...||++|+.++.... ..+.+ +.+..+.++.+.|
T Consensus 176 ~~lGG~~id~~l~~~l~~~~~~------~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (334)
T PRK13927 176 VRVGGDKFDEAIINYVRRNYNL------LI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITI 240 (334)
T ss_pred cCChHHHHHHHHHHHHHHHhCc------Cc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEE
Confidence 6799999999999999877743 11 1 2468999998875322 22333 3344566778999
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCcc-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 596 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~i~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
+|++|++++.++++++..+|.++|+.++.. .+.++ .|+|+||+|++|.|++.|++.|+.++....||+++||+||++
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK 320 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence 999999999999999999999999998643 23344 599999999999999999999998888899999999999999
Q ss_pred HHHh
Q psy18164 673 KAAD 676 (1212)
Q Consensus 673 ~aa~ 676 (1212)
++..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 9875
No 30
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7e-34 Score=354.78 Aligned_cols=210 Identities=34% Similarity=0.497 Sum_probs=186.1
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
++||||||||||+||++.+|+ +++++|..|++.+||+|+|. ++.+++|..|+.++..+|.++++++|||||+. ++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGE-PKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred cEEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 489999999999999999875 67999999999999999996 77899999999999999999999999999998 566
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++...+.+||. ++.. .++...+.+ ++..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||
T Consensus 80 ~~~~~~~~p~~-~~~~-~~~~~~~~~-~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 80 VQKDIKLVPYK-IVKA-DNGDAWVEI-DGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHHhhcCCeE-EEEc-CCCceEEEE-CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 78888899986 4433 344444544 46789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.|||++++||+||+|||++|+.... .++++|||||||||||+|++++..+...+++
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~------~~~~vlV~D~GggT~dvsv~~~~~~~~~vla 213 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK------GDEKILVYDLGGGTFDVSILEIGDGVFEVLS 213 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC------CCCEEEEEECCCCeEEEEEEEEeCCeEEEEE
Confidence 99999999999999999999987542 2468999999999999999999877665554
No 31
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=2.5e-32 Score=316.70 Aligned_cols=306 Identities=19% Similarity=0.297 Sum_probs=226.2
Q ss_pred EEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC-----c--EeecHHHHHhhhhCCCchHhHhHHhcCCCC
Q psy18164 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 358 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~-----~--r~~G~~A~~~~~~~p~~t~~~~k~llG~~~ 358 (1212)
+||||||+||+|++...| + ++ ..||+|+|.++ + .++|.+|..++.+.|.+.- +++
T Consensus 5 ~giDlGt~~s~i~~~~~~--~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~------ 66 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIR------ 66 (333)
T ss_pred eEEecCcceEEEEECCCC--E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEe------
Confidence 899999999999886433 3 32 37999999633 3 6799999887666565432 111
Q ss_pred CCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHH
Q psy18164 359 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 438 (1212)
Q Consensus 359 ~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al 438 (1212)
| +.++..... +.+..+++++........+..-..+|||||++|++.||+++
T Consensus 67 ------------p----------------i~~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 67 ------------P----------------MKDGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ------------c----------------CCCCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 1 111222222 22333444444333221121123799999999999999999
Q ss_pred HHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEE
Q psy18164 439 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518 (1212)
Q Consensus 439 ~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 518 (1212)
.+|++.||++++.+++||+|||++|+.... . +..++|||+||||||++++++. | + ..
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-----~-~~~~lVvDiG~gttdvs~v~~~-------~-------~---~~ 174 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-----E-PTGSMVVDIGGGTTEVAVISLG-------G-------I---VV 174 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-----C-CceEEEEEcCCCeEEEEEEEeC-------C-------E---Ee
Confidence 999999999999999999999999986432 2 5789999999999999999864 2 1 12
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce-----eEEEEee--cccCcce
Q psy18164 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE-----HFAQIEG--LIDEIDF 591 (1212)
Q Consensus 519 ~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~-----~~i~ie~--l~~~~d~ 591 (1212)
..+..+||++||+.|++++.++|.. ... +..||++|+.|+.... ..+.+.. ...+...
T Consensus 175 ~~~~~lGG~did~~l~~~l~~~~~~------~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (333)
T TIGR00904 175 SRSIRVGGDEFDEAIINYIRRTYNL------LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPR 239 (333)
T ss_pred cCCccchHHHHHHHHHHHHHHHhcc------cCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCe
Confidence 3456899999999999999877642 111 3578999999875322 1222221 1223445
Q ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCc-c-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHh
Q psy18164 592 KLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPM-DVI-S-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAAL 668 (1212)
Q Consensus 592 ~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~i-~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~ 668 (1212)
...|+|++|.+++.+.++++...|.++|+.++... .++ + .|+|+||+|++|.+++.|++.||.++....||+++||.
T Consensus 240 ~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~ 319 (333)
T TIGR00904 240 TIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAK 319 (333)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHH
Confidence 67899999999999999999999999999987542 244 3 69999999999999999999999888899999999999
Q ss_pred hHHHHHHh
Q psy18164 669 GAVYKAAD 676 (1212)
Q Consensus 669 GAa~~aa~ 676 (1212)
||++++..
T Consensus 320 Ga~~~~~~ 327 (333)
T TIGR00904 320 GTGKALED 327 (333)
T ss_pred HHHHHHhC
Confidence 99999754
No 32
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.1e-33 Score=350.05 Aligned_cols=211 Identities=28% Similarity=0.413 Sum_probs=184.2
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
..+||||||||||+||++.+|+ +++++|..|++.+||+|+|.++.++||..|+.++..+|.++++++||+||+.+++
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQ-AEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECCE-EEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 3689999999999999999885 6899999999999999999888899999999999999999999999999999876
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++.....+||. +... .++.+.+.+.+ ..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||
T Consensus 96 ~~~~~~~~~~~-~~~~-~~g~~~~~~~~-~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 96 IQQRYPHLPYQ-FVAS-ENGMPLIRTAQ-GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhhcCCeE-EEec-CCCceEEEecC-CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 34445667774 3332 34566666543 379999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.|||+++++|+||+|||++|++... .++++||||+||||||+||+++..+...+++
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~------~~~~vlV~DlGGGT~DvSv~~~~~~~~evla 229 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSG------QEGVIAVYDLGGGTFDISILRLSKGVFEVLA 229 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccC------CCCEEEEEECCCCeEEEEEEEeeCCEEEEEE
Confidence 99999999999999999999987542 2468999999999999999999877655444
No 33
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=8.9e-34 Score=350.32 Aligned_cols=208 Identities=31% Similarity=0.405 Sum_probs=182.5
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec-CceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~-~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
+||||||||||+||++.+|+ +++++|..|.+.+||+|+|.+ +.+++|..|+.++..+|.++++++|||+|+++.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~ 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGV-PEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT 79 (599)
T ss_pred CEEEEEccccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh
Confidence 48999999999999999874 789999999999999999974 5899999999999999999999999999999877432
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 196 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~ 196 (1212)
.+.+||. ++.. .++.+.+.+.+ ..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+
T Consensus 80 ---~~~~~~~-~~~~-~~~~~~~~~~~-~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 ---FSILPYR-FVDG-PGEMVRLRTVQ-GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred ---cccCCEE-EEEc-CCCceEEEeCC-CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 5667774 4433 34566666654 3799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 197 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 197 ~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
.|||+++++|+||+|||++|+.... .++++|||||||||||+||+++..+...+++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~------~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla 209 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA------SEGIYAVYDLGGGTFDVSILKLTKGVFEVLA 209 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC------CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEE
Confidence 9999999999999999999987543 2468999999999999999999887665553
No 34
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.8e-33 Score=350.49 Aligned_cols=213 Identities=29% Similarity=0.445 Sum_probs=186.8
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.++||||||||||+||++.+|+ +++++|..|++.+||+|+|. ++.+++|..|+.++..+|.++++++|||||+++++
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGK-PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCe-EEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 3599999999999999999885 67999999999999999996 56899999999999999999999999999999876
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcC-CcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
++...+.+||. ++.+ .++.+.+.+. .+..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++
T Consensus 117 -~~~~~~~~~~~-v~~~-~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYR-VVRD-ENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeE-EEec-CCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 45566778875 4433 3455555543 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccc
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGM 259 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~ 259 (1212)
||+.|||+++++|+||+|||++|+.... .++++|||||||||||+||+++..+...+++.
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~------~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKK------SNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccC------CCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 9999999999999999999999987543 24589999999999999999998877666654
No 35
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=2.9e-33 Score=348.38 Aligned_cols=209 Identities=34% Similarity=0.527 Sum_probs=184.6
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec-CceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~-~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
+||||||||||+||++.+|+ +++++|..|.+.+||+|+|.+ +.+++|..|+.++..+|.++++++||+||+++. .+
T Consensus 2 viGIDlGtt~s~va~~~~g~-~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGE-PVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred EEEEEeCcccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 78999999999999999885 568899999999999999974 589999999999999999999999999999884 46
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 196 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~ 196 (1212)
+...+.+||. +..+ ++.+.+.++ ++.++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+
T Consensus 79 ~~~~~~~~~~-v~~~--~~~~~~~v~-~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~ 154 (595)
T TIGR02350 79 TEEAKRVPYK-VVGD--GGDVRVKVD-GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGK 154 (595)
T ss_pred HHHhhcCCee-EEcC--CCceEEEEC-CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 6677889986 4433 455555554 67899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 197 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 197 ~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
.||++++++|+||+|||++|+..+.. .++++|||||||||||+||+++..+...+++
T Consensus 155 ~AGl~v~~li~EptAAAl~y~~~~~~-----~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 155 IAGLEVLRIINEPTAAALAYGLDKSK-----KDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred HcCCceEEEecchHHHHHHHhhcccC-----CCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 99999999999999999999875421 2568999999999999999999877555553
No 36
>KOG0102|consensus
Probab=100.00 E-value=8.3e-34 Score=318.56 Aligned_cols=222 Identities=30% Similarity=0.422 Sum_probs=203.3
Q ss_pred CceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEE-ecCceeEccchhhhhccCCCChHHHHHHHhCCCCCC
Q psy18164 35 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 113 (1212)
Q Consensus 35 ~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~-~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~ 113 (1212)
.-+|+|||+||||||++++.++. +.++.|..|.|.+||+|+| .++.+++|..|+++...||.|+++.-||+||++|++
T Consensus 26 ~~~vigidlgttnS~va~meg~~-~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKK-PKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCC-ceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 35699999999999999999775 5688999999999999999 577999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 114 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
+.++.+++..||+.+. ..++..++.+ .|..++|.++.+++|.+++++|+.+++..+.++|+||||||++.||+++++
T Consensus 105 ~evq~~~k~vpyKiVk--~~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkd 181 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVK--ASNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKD 181 (640)
T ss_pred HHHHHHHHhCCcceEE--ccCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHh
Confidence 9999999999997555 4556666666 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccchhhhhHH
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMKISLVTL 266 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~~~~~~~ 266 (1212)
|.++||++++++++||+|||++|++.... .+.++|||+||||||++|+.+..|-..+..++-...+-
T Consensus 182 ag~iagl~vlrvineptaaalaygld~k~------~g~iaV~dLgggtfdisilei~~gvfevksTngdtflg 248 (640)
T KOG0102|consen 182 AGQIAGLNVLRVINEPTAAALAYGLDKKE------DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLG 248 (640)
T ss_pred hhhhccceeeccCCccchhHHhhcccccC------CCceEEEEcCCceeeeeeehhccceeEEEeccCccccC
Confidence 99999999999999999999999986543 35899999999999999999999999888877665443
No 37
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.3e-31 Score=309.72 Aligned_cols=309 Identities=19% Similarity=0.256 Sum_probs=233.3
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-C--cEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-G--ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~--~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
-+||||||+++++++... ++ ++ .+||+|+|.+ + ..++|.+|.....+.|.+.. +
T Consensus 10 ~vgiDlGt~~t~i~~~~~--~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~----------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK--GI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--A----------- 66 (335)
T ss_pred ceEEEcCCCcEEEEECCC--CE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--E-----------
Confidence 389999999999998633 33 22 2699999964 2 35899999877655554321 0
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
.+|. .++.... -+.+..+|+++.+.+..........+|||+|++|+..+|+++.+|
T Consensus 67 -------~~pi----------------~~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 67 -------IRPL----------------KDGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred -------eecC----------------CCCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 0111 1121112 244666777777655443344467899999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
++.+|++++.+++||+|||++|+..... +..++|||+||||||++++... .+ .....
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~------~~~~lVvDiG~gttdvs~v~~g--------------~~---~~~~~ 179 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTE------PVGNMVVDIGGGTTEVAVISLG--------------GI---VYSES 179 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCC------CCceEEEEeCCCeEEEEEEEeC--------------CE---EeecC
Confidence 9999999999999999999999764322 4567999999999999999753 11 12456
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce----eEEEEe--ecccCcceEEEE
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE----HFAQIE--GLIDEIDFKLLV 595 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~----~~i~ie--~l~~~~d~~~~i 595 (1212)
..+||.+||+.|.+++.+++.- +.. ...||++|+.|+.... ..+.+. .+..+.+..+.|
T Consensus 180 ~~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 244 (335)
T PRK13930 180 IRVAGDEMDEAIVQYVRRKYNL------LIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEI 244 (335)
T ss_pred cCchhHHHHHHHHHHHHHHhCC------CCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEE
Confidence 7899999999999999887642 111 2468999999875432 123332 233445568899
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCccE-EEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVISQ-VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 596 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~i~~-ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
+|++|++++.++++++.+.|.++|+.+... .+.++. |+|+||+|++|.+++.|++.|+.++....||+++||+||++
T Consensus 245 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~ 324 (335)
T PRK13930 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGK 324 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 999999999999999999999999987533 234454 99999999999999999999998888888999999999999
Q ss_pred HHHhhc
Q psy18164 673 KAADLS 678 (1212)
Q Consensus 673 ~aa~ls 678 (1212)
.+....
T Consensus 325 ~~~~~~ 330 (335)
T PRK13930 325 ALENLD 330 (335)
T ss_pred HHhChH
Confidence 987543
No 38
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.9e-33 Score=350.54 Aligned_cols=215 Identities=37% Similarity=0.539 Sum_probs=183.9
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHHH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ 117 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~~ 117 (1212)
|||||||||||+||++.+| .++++.|..|++++||+|+|.++++++|..|...+.++|.++++++|||||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 6899999999999999977 579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeeccCCCceEEEEcCC-cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHH
Q psy18164 118 LFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 196 (1212)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~ 196 (1212)
...+.+||..+...++...+.+...+ ...++|+++++++|++|++.++.++|..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999998644333444444444332 36899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 197 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 197 ~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
.|||++++||+||+|||++|++.+.. .++++|||||||||+|+|++++..+..++++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~-----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD-----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS-----SEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ccccccceeecccccccccccccccc-----cccceeccccccceEeeeehhcccccccccc
Confidence 99999999999999999999876554 3579999999999999999999977665554
No 39
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-33 Score=339.71 Aligned_cols=192 Identities=33% Similarity=0.464 Sum_probs=169.8
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC-ceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~-~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
+.+|||||||||||||+++++..+.++.|..|.+.+||+|+|..+ ++++|..|+.++..+|.++++.+||++|+....
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~- 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG- 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC-
Confidence 457999999999999999977457888999999999999999755 699999999999999999999999999985110
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
....+.+ +++.++|+++.+++|.+|++.++.++|..+.++|||||+||++.||.++++|
T Consensus 84 --------------------~~~~~~~-~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 84 --------------------LKISVEV-DGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred --------------------Ccceeee-CCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 0011221 3478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccc
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 255 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~ 255 (1212)
|++|||+++++++||+|||++|++... .+.+|||||+||||||+||+++..|-..
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~------~~~~vlV~DlGGGTfDvSll~~~~g~~e 197 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG------KEKTVLVYDLGGGTFDVSLLEIGDGVFE 197 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC------CCcEEEEEEcCCCCEEEEEEEEcCCEEE
Confidence 999999999999999999999998765 2569999999999999999999966333
No 40
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.2e-32 Score=342.43 Aligned_cols=211 Identities=31% Similarity=0.457 Sum_probs=183.4
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+||||||||||+||++.+|+ +++++|..|.+.+||+|+|. ++.+++|..|+.++..+|.++++++||+||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGK-PTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 589999999999999999885 67999999999999999996 46799999999999999999999999999999865
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEc-CCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
+....+.+||. ++.. .++.+.+.+ ..+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~-v~~~-~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYK-VKTD-SNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeE-EEEC-CCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 45556778874 4433 344555544 24678999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
|+.|||+++++|+||+|||++|+.... .+.++|||||||||||+||+++..+...+++
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~------~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla 215 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKK------NNETILVFDLGGGTFDVSILEVGDGVFEVLS 215 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccC------CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEE
Confidence 999999999999999999999987543 2458999999999999999999876655543
No 41
>KOG0104|consensus
Probab=100.00 E-value=2.6e-32 Score=315.68 Aligned_cols=234 Identities=59% Similarity=0.955 Sum_probs=220.1
Q ss_pred HHHHHhhhcccCceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHH
Q psy18164 24 VLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYF 103 (1212)
Q Consensus 24 ~~~~~~~~~~~~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~ 103 (1212)
++++++...+...+|++||+|+.++.||++.+|-|.+|++|..+.|++|++|+|.++.|++|.+|...+.++|++++..+
T Consensus 10 l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l 89 (902)
T KOG0104|consen 10 LLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQL 89 (902)
T ss_pred HHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHH
Confidence 33444455666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCC
Q psy18164 104 LDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYF 183 (1212)
Q Consensus 104 KrllG~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f 183 (1212)
+.+||+..+++.+..+.+.+|++.++.++.++.+.|.+.+...|++|++++|+|.+.+..|+.+...++.++|||||.+|
T Consensus 90 ~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F 169 (902)
T KOG0104|consen 90 KDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFF 169 (902)
T ss_pred HHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCccc
Confidence 99999999999999999999999999998899999999887899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 184 NQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
++.||+++.+||++||++++.||++-+|||+.|++.++..++. .++++||||||.|++.++++.|.-.+.+..|
T Consensus 170 ~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~-~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g 243 (902)
T KOG0104|consen 170 NQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINE-TPQHYIFYDMGSGSTSATIVSYQLVKTKEQG 243 (902)
T ss_pred CHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCC-CceEEEEEecCCCceeEEEEEEEeecccccc
Confidence 9999999999999999999999999999999999998776654 4689999999999999999999999999887
No 42
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.8e-32 Score=336.17 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=167.8
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH--
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP-- 114 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~-- 114 (1212)
.+|||||||||||||++.+| .+++++|..|.+.+||+|+|.+++++||..| +++++||++|+++++.
T Consensus 20 ~viGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 48999999999999999876 5789999999999999999988889999987 7999999999998762
Q ss_pred --HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHH
Q psy18164 115 --VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 192 (1212)
Q Consensus 115 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~ 192 (1212)
.+....+. .... ..+.+.+.. +++.++|+++++++|++|++.|+.++|.++.++|||||++|++.||++++
T Consensus 89 ~~~~~~~~k~-----~~~~-~~~~~~~~~-~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 89 TPALFSLVKD-----YLDV-NSSELKLNF-ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred chhhHhhhhh-----eeec-CCCeeEEEE-CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 22111111 1111 123334443 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccch
Q psy18164 193 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMK 260 (1212)
Q Consensus 193 ~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~ 260 (1212)
+||+.||++++++|+||+|||++|+..... .+++|||||||||||+|++++..+...+++..
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~ 223 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ------KGCYLVYDLGGGTFDVSILNIQEGIFQVIATN 223 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccCC------CCEEEEEECCCCcEEEEEEEEeCCeEEEEEEc
Confidence 999999999999999999999999875422 35899999999999999999998776666543
No 43
>KOG0101|consensus
Probab=99.98 E-value=1.5e-32 Score=322.89 Aligned_cols=214 Identities=31% Similarity=0.475 Sum_probs=194.1
Q ss_pred cCceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCC
Q psy18164 34 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 113 (1212)
Q Consensus 34 ~~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~ 113 (1212)
..+.++|||||||+||++++.++ .++++.|..|++.+||+|+|.++++++|.+|..+...+|.++++++||++|+.+++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred cccceeeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 34678999999999999999976 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceeeeccCCCceEEEEcC-CcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHH
Q psy18164 114 PVVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 192 (1212)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~ 192 (1212)
+.++..+++|||......+..+.+.+... ..+.++|+++.++.|.++++.++.++|..+.++|+|||+||++.||+++.
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~ 163 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATK 163 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHH
Confidence 99999999999964433444566666554 35789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEee
Q psy18164 193 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 252 (1212)
Q Consensus 193 ~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~ 252 (1212)
+|+.+||++++++|+||+|||++|++... .....+|||+|+||||||||++.+..|
T Consensus 164 ~A~~iaGl~vlrii~EPtAaalAygl~k~----~~~~~~VlI~DlGggtfdvs~l~i~gG 219 (620)
T KOG0101|consen 164 DAALIAGLNVLRIINEPTAAALAYGLDKK----VLGERNVLIFDLGGGTFDVSVLSLEGG 219 (620)
T ss_pred HHHHhcCCceeeeecchHHHHHHhhcccc----ccceeeEEEEEcCCCceeeeeEEeccc
Confidence 99999999999999999999999997655 224578999999999999999999875
No 44
>KOG0103|consensus
Probab=99.97 E-value=1.9e-31 Score=308.98 Aligned_cols=226 Identities=32% Similarity=0.464 Sum_probs=205.3
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
|+|+|||||..||.+|+.+.+ .+++|.|+.++|.+|++|+|....+++|.+|..+...|+.|++..+||++|+.|++|.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 679999999999999999988 5899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEc-CCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
++.....+|+..+...++...+.+.. +..+.+++++|++|||.+|++.|+..+..++.+|||+||+||++.||+++.+|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 99999999996454444444443333 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCC-CCCCCeEEEEEecCCceEEEEEEEEEeeccccccchhh
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDF-NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMKIS 262 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~-~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~~~ 262 (1212)
|+.|||++++|++|.+|+|++||..+.... +...+++|+++|||..++.+|++.|..|+.+++++..-
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D 228 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFD 228 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecc
Confidence 999999999999999999999998776532 24457999999999999999999999999999988654
No 45
>PRK11678 putative chaperone; Provisional
Probab=99.96 E-value=3.2e-29 Score=297.25 Aligned_cols=179 Identities=20% Similarity=0.223 Sum_probs=155.2
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe---------------------------------------
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH--------------------------------------- 78 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~--------------------------------------- 78 (1212)
++|||||||||++|++.+|+ ++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~-~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGK-PRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCCc-eEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 47999999999999999775 68989999999999999993
Q ss_pred --cCceeEccchhhhhccCCCCh--HHHHHHHhCCCCCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHH
Q psy18164 79 --KGERTFGEDAQIIGTRFPSNS--YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 154 (1212)
Q Consensus 79 --~~~~~iG~~A~~~~~~~p~~~--~~~~KrllG~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~ 154 (1212)
++..++|..|......+|..+ +..+||++|...-. .+....++++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~-----------------------------~~~~~~~e~l~a 131 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK-----------------------------PQQVALFEDLVC 131 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC-----------------------------ccceeCHHHHHH
Confidence 456789999999999999888 77999999974111 012234899999
Q ss_pred HHHHHHHHHHHHhcCCccccEEEccCCCCC-----HHHHHH---HHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCC
Q psy18164 155 MLLHKAREYASVSAGQVINEAVIIVPGYFN-----QIERQS---MLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNE 226 (1212)
Q Consensus 155 ~~L~~l~~~a~~~~~~~~~~~VitVPa~f~-----~~qr~~---l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~ 226 (1212)
++|++|++.++.++|.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999998 777765 7999999999999999999999999985322
Q ss_pred CCCeEEEEEecCCceEEEEEEEEEee
Q psy18164 227 TNPVHVMFYDMGAWSTTVSIVSYQVV 252 (1212)
Q Consensus 227 ~~~~~vlV~D~GggT~Dvsvv~~~~~ 252 (1212)
.++++|||||||||+|+||+++.++
T Consensus 207 -~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 207 -EEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred -CCCeEEEEEeCCCeEEEEEEEecCc
Confidence 2568999999999999999999764
No 46
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.95 E-value=1.7e-27 Score=268.54 Aligned_cols=306 Identities=22% Similarity=0.319 Sum_probs=217.9
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC---cEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~---~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
-+||||||+++.|+.-..| ++.++ ||+|+++.. -..+|.+|..+.-+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~~~~G----iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG----IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE----EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred ceEEecCcccEEEEECCCC----EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 4899999999999544444 55554 999999753 2458999977655544332
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
.+...+.+| .+.--++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 58 ---------------------~~~~Pl~~G-vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 58 ---------------------EVVRPLKDG-VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp ---------------------EEE-SEETT-EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred ---------------------EEEccccCC-cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 111222333 2333456677777777766553223445799999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
+..||.+-+.||.||.|||+..+..-.. +...|++|+||||||++++.+. | ++... .
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~------~~g~miVDIG~GtTdiavislg-------g---------iv~s~-s 172 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFE------PRGSMIVDIGGGTTDIAVISLG-------G---------IVASR-S 172 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTS------SS-EEEEEE-SS-EEEEEEETT-------E---------EEEEE-E
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCC------CCceEEEEECCCeEEEEEEECC-------C---------EEEEE-E
Confidence 9999999999999999999998886433 6889999999999999999742 2 22222 2
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc----eeEEEEe--ecccCcceEEEE
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKLLV 595 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~----~~~i~ie--~l~~~~d~~~~i 595 (1212)
...||++||++|.+|+.++|+- . +. .+.||++|+.++.-. ...+.|. .+..+..-++.|
T Consensus 173 i~~gG~~~DeaI~~~ir~~y~l--~----Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i 237 (326)
T PF06723_consen 173 IRIGGDDIDEAIIRYIREKYNL--L----IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEI 237 (326)
T ss_dssp ES-SHHHHHHHHHHHHHHHHSE--E---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEE
T ss_pred EEecCcchhHHHHHHHHHhhCc--c----cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEE
Confidence 4789999999999999999954 1 11 246899999886432 2244554 456788889999
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCc--cEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVPM-DVI--SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 596 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~i--~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
+-+++.+.|.+.+.++...|+++|+...-.. .|| +.|+|+||+++++.+.+.|++.+|.++...-||..|||.||..
T Consensus 238 ~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~ 317 (326)
T PF06723_consen 238 TSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGK 317 (326)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHH
Confidence 9999999999999999999999999763111 132 4699999999999999999999999999999999999999986
Q ss_pred HHH
Q psy18164 673 KAA 675 (1212)
Q Consensus 673 ~aa 675 (1212)
...
T Consensus 318 ~l~ 320 (326)
T PF06723_consen 318 LLE 320 (326)
T ss_dssp TTC
T ss_pred HHh
Confidence 654
No 47
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.94 E-value=5.5e-25 Score=237.01 Aligned_cols=311 Identities=21% Similarity=0.295 Sum_probs=241.6
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec--Cc---EeecHHHHHhhhhCCCchHhHhHHhcCCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--GE---RTFGEDAQIIGTRFPSNSYGYFLDLLGKS 357 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~--~~---r~~G~~A~~~~~~~p~~t~~~~k~llG~~ 357 (1212)
+..+||||||.|+.|..-..| |++|. ||+|++.. +. ..+|.+|+.+.-+.|.|.
T Consensus 6 s~diGIDLGTanTlV~~k~kg----IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni----------- 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG----IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI----------- 64 (342)
T ss_pred cccceeeecccceEEEEcCce----EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc-----------
Confidence 457999999999999777444 77877 99999965 32 358999976544444432
Q ss_pred CCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcC-CccceEEEecCCCCCHHHHH
Q psy18164 358 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG-QVINEAVIIVPGYFNQIERQ 436 (1212)
Q Consensus 358 ~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~-~~i~~~VItVP~~f~~~qR~ 436 (1212)
.......++ .+.--++...+|+|+.+....... .....++|.||..-++-+|+
T Consensus 65 -------------------------~aiRPmkdG-VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 65 -------------------------VAIRPMKDG-VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred -------------------------eEEeecCCc-EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 112223343 344456677778888777654333 34456999999999999999
Q ss_pred HHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEE
Q psy18164 437 SMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516 (1212)
Q Consensus 437 al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl 516 (1212)
|+++|++.||.+.+.++.||.|||+..+..-.. +..-||||+||||||++++++. | +
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~e------p~G~mvvDIGgGTTevaVISlg-------g---------i- 175 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIME------PTGSMVVDIGGGTTEVAVISLG-------G---------I- 175 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCcccC------CCCCEEEEeCCCceeEEEEEec-------C---------E-
Confidence 999999999999999999999999988775543 5667999999999999999975 4 2
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhcc--------CCceeEEEEeecccC
Q psy18164 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLS--------ANNEHFAQIEGLIDE 588 (1212)
Q Consensus 517 ~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS--------~n~~~~i~ie~l~~~ 588 (1212)
.+.....+||+.||..|.+|+.++|+- -. -.+ .||++|+..- ...+..+.-.++..+
T Consensus 176 v~~~Sirv~GD~~De~Ii~yvr~~~nl--~I------Ge~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~G 240 (342)
T COG1077 176 VSSSSVRVGGDKMDEAIIVYVRKKYNL--LI------GER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTG 240 (342)
T ss_pred EEEeeEEEecchhhHHHHHHHHHHhCe--ee------cHH-------HHHHHHHHhcccccccCCccceeeEEeeecccC
Confidence 223335799999999999999999864 11 122 3666665432 123344555667778
Q ss_pred cceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCccE-EEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhH
Q psy18164 589 IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSA--VPMDVISQ-VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEA 665 (1212)
Q Consensus 589 ~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~--~~~~~i~~-ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~dea 665 (1212)
..-.++++-++..+.+++.+++|.+.++.+|+... +..+-++. ++|+||++-+..+.+.|.+..+..+...-||-.|
T Consensus 241 lPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~ 320 (342)
T COG1077 241 LPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTC 320 (342)
T ss_pred CCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHH
Confidence 88889999999999999999999999999999863 44555666 9999999999999999999999888888999999
Q ss_pred HHhhHHHHHHhhc
Q psy18164 666 AALGAVYKAADLS 678 (1212)
Q Consensus 666 VA~GAa~~aa~ls 678 (1212)
||.|+.+....+.
T Consensus 321 Va~G~G~~le~~~ 333 (342)
T COG1077 321 VAKGTGKALEALD 333 (342)
T ss_pred HHhccchhhhhhH
Confidence 9999998887665
No 48
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.94 E-value=4.3e-26 Score=250.10 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=173.8
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCC
Q psy18164 393 LYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN 472 (1212)
Q Consensus 393 ~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~ 472 (1212)
.+.--+..+++|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34456778999999999999999989999999999999999999999999999999999999999999988531
Q ss_pred CCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCC
Q psy18164 473 ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVF 552 (1212)
Q Consensus 473 ~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~ 552 (1212)
..+|+|+||||||+++++- | . ++. ..+..+||++||+.|++++. - +
T Consensus 109 -----~~~vvDiGggtt~i~i~~~--------G------~--i~~-~~~~~~GG~~it~~Ia~~~~----i------~-- 154 (239)
T TIGR02529 109 -----NGAVVDVGGGTTGISILKK--------G------K--VIY-SADEPTGGTHMSLVLAGAYG----I------S-- 154 (239)
T ss_pred -----CcEEEEeCCCcEEEEEEEC--------C------e--EEE-EEeeecchHHHHHHHHHHhC----C------C--
Confidence 2599999999999999862 3 2 222 34568999999998865442 1 1
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEE
Q psy18164 553 ENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQV 632 (1212)
Q Consensus 553 ~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~V 632 (1212)
+.+||++|+.++ +.+++.++|+++++++...|++.|++.+ ++.|
T Consensus 155 ---------~~~AE~~K~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v 198 (239)
T TIGR02529 155 ---------FEEAEEYKRGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDL 198 (239)
T ss_pred ---------HHHHHHHHHhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEE
Confidence 257899998654 1466788999999999999999998653 5789
Q ss_pred EEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 633 ILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 633 iLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
+|+||++++|.+++.|++.||.++..+.||++++|.|||+
T Consensus 199 ~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 199 YLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred EEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 9999999999999999999998888899999999999986
No 49
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.93 E-value=5.5e-24 Score=237.62 Aligned_cols=202 Identities=21% Similarity=0.281 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCC
Q psy18164 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 476 (1212)
Q Consensus 397 eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 476 (1212)
.+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++..|... .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 5667789999999999998888999999999999999999999999999999999999999999887441 1
Q ss_pred eEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHH
Q psy18164 477 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 556 (1212)
Q Consensus 477 ~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~r 556 (1212)
.+++|||||||+++++.- | .+ +. ..+..+||++||+.|++++. - +
T Consensus 137 --~~vvDIGggtt~i~v~~~--------g------~~--~~-~~~~~~GG~~it~~Ia~~l~----i------~------ 181 (267)
T PRK15080 137 --GAVVDIGGGTTGISILKD--------G------KV--VY-SADEPTGGTHMSLVLAGAYG----I------S------ 181 (267)
T ss_pred --cEEEEeCCCcEEEEEEEC--------C------eE--EE-EecccCchHHHHHHHHHHhC----C------C------
Confidence 589999999999999751 3 22 22 24679999999999987752 1 1
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEc
Q psy18164 557 AVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636 (1212)
Q Consensus 557 a~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvG 636 (1212)
+.+||++|+.++ +++++.++++++++++.+.|++.|+.. .++.|+|+|
T Consensus 182 -----~~eAE~lK~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtG 229 (267)
T PRK15080 182 -----FEEAEQYKRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVG 229 (267)
T ss_pred -----HHHHHHHHhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEEC
Confidence 357889988653 357899999999999999999999864 578999999
Q ss_pred CCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 637 GssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
|+||+|.+++.+++.||.++....||+.++|.|||++|
T Consensus 230 G~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 230 GTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999888889999999999999875
No 50
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.86 E-value=3.8e-20 Score=218.01 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCe
Q psy18164 433 IERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQ 512 (1212)
Q Consensus 433 ~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~ 512 (1212)
...+.+.+|++.||+++..++.||.|+|++|..... . +..++++|+||||||++++.- | .
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-----~-~~~~~vvDiG~gtt~i~i~~~--------g------~ 217 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-----K-ELGVCLIDIGGGTTDIAVYTG--------G------S 217 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-----h-cCCEEEEEeCCCcEEEEEEEC--------C------E
Confidence 456788899999999999999999999998854221 2 567999999999999999962 2 2
Q ss_pred EEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCC------ceeEEEEeecc
Q psy18164 513 VSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN------NEHFAQIEGLI 586 (1212)
Q Consensus 513 ~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n------~~~~i~ie~l~ 586 (1212)
+. ......+||++||..|++.+. ..+.+||++|+.++.. .+..+.+..+
T Consensus 218 ~~---~~~~i~~GG~~it~~i~~~l~---------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~- 272 (371)
T TIGR01174 218 IR---YTKVIPIGGNHITKDIAKALR---------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSV- 272 (371)
T ss_pred EE---EEeeecchHHHHHHHHHHHhC---------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccC-
Confidence 21 123457999999998876431 1256799999998763 2345556554
Q ss_pred cCcceEEEEeHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCccE-EEEEcCCcCCHHHHHHHHHHhCCcc--cC----
Q psy18164 587 DEIDFKLLVTRAEFEALNEDLFDRVGYPVE-QALKSSAVPMDVISQ-VILVGAGTRVPKVQEKITKVVGVEL--SK---- 658 (1212)
Q Consensus 587 ~~~d~~~~itR~efe~l~~~l~~~i~~~i~-~~L~~a~~~~~~i~~-ViLvGGssriP~Vq~~l~~~fg~~i--~~---- 658 (1212)
+.+....|+|++|++++++.++++...|+ +.|+.++.. ++++. |+|+||+|++|.|++.+++.||.++ ..
T Consensus 273 -~~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~ 350 (371)
T TIGR01174 273 -GERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNI 350 (371)
T ss_pred -CCCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCcc
Confidence 24667899999999999999999999997 999999877 67777 9999999999999999999999432 11
Q ss_pred ------CCCchhHHHhhHHHH
Q psy18164 659 ------NLNTDEAAALGAVYK 673 (1212)
Q Consensus 659 ------~~n~deaVA~GAa~~ 673 (1212)
.-+|..++|.|.++|
T Consensus 351 ~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 351 GGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred CCchhhcCCcHHHHHHHHHhC
Confidence 126788888888764
No 51
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.82 E-value=2.1e-18 Score=205.44 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=145.4
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEE
Q psy18164 436 QSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSV 515 (1212)
Q Consensus 436 ~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~v 515 (1212)
+.+..|++.|||++..++.||.|+|+++..... . ...++++||||||||+++++ .| .
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-----~-~~gv~vvDiGggtTdisv~~--------~G------~--- 225 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE-----R-ELGVCVVDIGGGTMDIAVYT--------GG------A--- 225 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh-----h-hcCeEEEEeCCCceEEEEEE--------CC------E---
Confidence 344679999999999999999999998854321 2 56799999999999999997 13 2
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhcc----CC--ceeEEEEeecccCc
Q psy18164 516 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLS----AN--NEHFAQIEGLIDEI 589 (1212)
Q Consensus 516 l~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS----~n--~~~~i~ie~l~~~~ 589 (1212)
+.+.....+||++|++.|++.+. - -+.+||++|.... .. .+..+.+..+.+..
T Consensus 226 l~~~~~i~~GG~~it~dIa~~l~----i-----------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~ 284 (420)
T PRK09472 226 LRHTKVIPYAGNVVTSDIAYAFG----T-----------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP 284 (420)
T ss_pred EEEEeeeechHHHHHHHHHHHhC----c-----------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC
Confidence 22333467999999988875541 1 1357899986532 21 23456666543322
Q ss_pred ceEEEEeHHHHHHHHHHHHHHHHHHHH-------HHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccC----
Q psy18164 590 DFKLLVTRAEFEALNEDLFDRVGYPVE-------QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSK---- 658 (1212)
Q Consensus 590 d~~~~itR~efe~l~~~l~~~i~~~i~-------~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~---- 658 (1212)
...|+|.+|.+++.+-++.+.+.|+ ..|..+++....++.|+|+||++++|.|++.+++.|+.++..
T Consensus 285 --~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~ 362 (420)
T PRK09472 285 --PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPL 362 (420)
T ss_pred --CeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCc
Confidence 2489999999999996555555554 566777888888999999999999999999999999843221
Q ss_pred --------CCCchhHHHhhHHHHHHh
Q psy18164 659 --------NLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 659 --------~~n~deaVA~GAa~~aa~ 676 (1212)
.-+|..|+|.|.++++..
T Consensus 363 ~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 363 NITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred ccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 247999999999999873
No 52
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.78 E-value=1.5e-18 Score=201.02 Aligned_cols=161 Identities=23% Similarity=0.337 Sum_probs=126.3
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC-c--eeEccchhhhhccCCCChHHHHHHHhCCCCCC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 113 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~-~--~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~ 113 (1212)
..+||||||+|+++ +.+++++ +.+ .||+|+|+++ . ..+|.+|+....++|.++... +
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~--~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~-------- 64 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI--ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R-------- 64 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE--Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e--------
Confidence 35899999999985 4456543 444 3999999743 2 579999999888888764331 1
Q ss_pred HHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccc--cEEEccCCCCCHHHHHHH
Q psy18164 114 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVIN--EAVIIVPGYFNQIERQSM 191 (1212)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~--~~VitVPa~f~~~qr~~l 191 (1212)
|. ..|. +.--++++.+|+++++.++..++..+. .+|||||++|+..||+++
T Consensus 65 ----------pi----------------~~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 65 ----------PM----------------KDGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ----------cC----------------CCCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 11 1121 122278899999999998888776554 799999999999999999
Q ss_pred HHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 192 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 192 ~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
.+|++.||++++.+++||+|||++|+.... .+..+||+|+||||+|++++.+.
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~------~~~~~lvvDiG~gtt~v~vi~~~ 170 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVD------EPVANVVVDIGGGTTEVAIISFG 170 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcC------CCceEEEEEeCCCeEEEEEEEeC
Confidence 999999999999999999999999976322 24579999999999999999864
No 53
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.73 E-value=4.2e-17 Score=189.60 Aligned_cols=159 Identities=23% Similarity=0.309 Sum_probs=118.5
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC--c-eeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~--~-~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
+||||||+||+++....+ .++. .||+|+|... . ..+|.+|+....+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~-------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA-------------- 61 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE--------------
Confidence 799999999999886333 3442 4999999743 3 46899998776665554321
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
..|. .+| .+...+++..+|+++++.+..........+|||||++|+..||+++++|+
T Consensus 62 ------~~pi-------~~G----------~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 ------IRPL-------RDG----------VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ------EccC-------CCC----------eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 0111 111 23344677888888886654332223347999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
+.||++.+.+++||+|||++|+.... .+..+||||+||||||+++++..
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~------~~~~~lVvDiGggttdvsvv~~g 167 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS------QPSGNMVVDIGGGTTDIAVLSLG 167 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc------CCCeEEEEEeCCCeEEEEEEEeC
Confidence 99999999999999999999986432 23468999999999999999874
No 54
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.71 E-value=1.3e-16 Score=185.35 Aligned_cols=159 Identities=21% Similarity=0.343 Sum_probs=113.4
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC-----c--eeEccchhhhhccCCCChHHHHHHHhCCCC
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 111 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~-----~--~~iG~~A~~~~~~~p~~~~~~~KrllG~~~ 111 (1212)
+||||||+||+++....| + ++ ..||+|+|.++ . ..+|.+|+....+.|.+... +
T Consensus 5 ~giDlGt~~s~i~~~~~~--~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--I------- 65 (333)
T ss_pred eEEecCcceEEEEECCCC--E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--E-------
Confidence 899999999999885333 2 33 26999999733 3 67999998776555544210 0
Q ss_pred CCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHH
Q psy18164 112 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 191 (1212)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l 191 (1212)
.|. .+| ..... +.+..+++|++.......+.....+|+|||++|+..||+++
T Consensus 66 -----------~pi-------~~G---------~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 66 -----------RPM-------KDG---------VIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred -----------ecC-------CCC---------EEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 111 112 11121 34455556555544332222223799999999999999999
Q ss_pred HHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 192 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 192 ~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
++|++.+|++.+.+++||+|||++|+.... .+..++|||+||||+|++++++.
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~------~~~~~lVvDiG~gttdvs~v~~~ 170 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE------EPTGSMVVDIGGGTTEVAVISLG 170 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc------CCceEEEEEcCCCeEEEEEEEeC
Confidence 999999999999999999999999976332 23578999999999999999875
No 55
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.66 E-value=5.8e-16 Score=180.28 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=113.0
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC---ceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~---~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.|||||||+|++++.. |+.. ++ .+||+|+|.+. ..++|.+|.....++|.++..
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~------------- 63 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA------------- 63 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE-------------
Confidence 4899999999998553 3333 32 27999999643 348999998776665544211
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
..|. .+|..... +.+..+++++......... ....+|+|+|++|++.||++++.|
T Consensus 64 -------~~pi----------------~~G~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 64 -------IRPM----------------KDGVIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred -------EecC----------------CCCeecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 0111 11111111 3445555555554433222 124799999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
++.||++.+.+++||+|||++|+.... .+..++|||+||||||++++++.
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~------~~~~~lvvDiGggttdvs~v~~~ 168 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVT------EPTGSMVVDIGGGTTEVAVISLG 168 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCccc------CCCeEEEEEeCCCeEEEEEEecC
Confidence 999999999999999999999986432 23468999999999999999875
No 56
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.66 E-value=2.1e-15 Score=175.69 Aligned_cols=159 Identities=26% Similarity=0.324 Sum_probs=116.8
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec---CceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK---GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~---~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
+||||||++|++++. |+.+ ++ + +||+|++.+ ...++|.+|.......|.+...
T Consensus 11 vgiDlGt~~t~i~~~--~~~~-~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~-------------- 66 (335)
T PRK13930 11 IGIDLGTANTLVYVK--GKGI-VL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA-------------- 66 (335)
T ss_pred eEEEcCCCcEEEEEC--CCCE-EE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--------------
Confidence 899999999999986 3332 32 1 599999964 2368999998776554433110
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
..|+ .+|.... -+.+..+++++.+.+..........+|+|+|++|+..+|+.+.+|+
T Consensus 67 ------~~pi----------------~~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 67 ------IRPL----------------KDGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred ------eecC----------------CCCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 0111 1121111 2457778888876665543444578999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
+.+|++.+.+++||+|||++|+..... ...+||||+||||||++++...
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~~------~~~~lVvDiG~gttdvs~v~~g 172 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVTE------PVGNMVVDIGGGTTEVAVISLG 172 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcCC------CCceEEEEeCCCeEEEEEEEeC
Confidence 999999999999999999998764321 2357999999999999999764
No 57
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.62 E-value=6.7e-15 Score=159.58 Aligned_cols=161 Identities=26% Similarity=0.347 Sum_probs=120.8
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec--C---ceeEccchhhhhccCCCChHHHHHHHhCCCC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--G---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 111 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~--~---~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~ 111 (1212)
..+|||+||.||.|+.- |+. ++++. ||+|++.. + -..+|.+|+....+.|.+..
T Consensus 7 ~diGIDLGTanTlV~~k--~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~----------- 65 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV----------- 65 (342)
T ss_pred ccceeeecccceEEEEc--Cce--EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCce-----------
Confidence 35899999999999876 332 55564 99999965 2 24589999877666665521
Q ss_pred CCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcC-CccccEEEccCCCCCHHHHHH
Q psy18164 112 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG-QVINEAVIIVPGYFNQIERQS 190 (1212)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~-~~~~~~VitVPa~f~~~qr~~ 190 (1212)
.+....+|-+ .--+++..+++|+.+......+ ....+++++||..-++-.|++
T Consensus 66 ----------------aiRPmkdGVI----------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 66 ----------------AIRPMKDGVI----------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred ----------------EEeecCCcEe----------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 1111122222 2237888899999988875433 344579999999999999999
Q ss_pred HHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 191 MLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 191 l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
+++|++.||.+.+.+++||.|||+..++.-.. +..-||||+||||+|++++++.
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglpi~e------p~G~mvvDIGgGTTevaVISlg 173 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLPIME------PTGSMVVDIGGGTTEVAVISLG 173 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCcccC------CCCCEEEEeCCCceeEEEEEec
Confidence 99999999999999999999999977653322 2346999999999999998764
No 58
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.61 E-value=2e-13 Score=158.40 Aligned_cols=206 Identities=25% Similarity=0.305 Sum_probs=162.1
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeec
Q psy18164 422 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKT 501 (1212)
Q Consensus 422 ~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~ 501 (1212)
.++|+|..+ -+.|.+|.+.+|+++..++-+|-|+|.+....... ...++++||||||||+++++-
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEk------elGv~lIDiG~GTTdIai~~~----- 222 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEK------ELGVALIDIGGGTTDIAIYKN----- 222 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccH------hcCeEEEEeCCCcEEEEEEEC-----
Confidence 466666554 45688899999999999999999999876443322 577999999999999999982
Q ss_pred ccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccC------C
Q psy18164 502 KERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA------N 575 (1212)
Q Consensus 502 ~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~------n 575 (1212)
| . +.+.+...+||++++..|+.-|.--| ..||++|...-. .
T Consensus 223 ---G------~---l~~~~~ipvgG~~vT~DIa~~l~t~~---------------------~~AE~iK~~~g~a~~~~~~ 269 (418)
T COG0849 223 ---G------A---LRYTGVIPVGGDHVTKDIAKGLKTPF---------------------EEAERIKIKYGSALISLAD 269 (418)
T ss_pred ---C------E---EEEEeeEeeCccHHHHHHHHHhCCCH---------------------HHHHHHHHHcCccccCcCC
Confidence 3 2 23333468999999999987764333 358888876532 2
Q ss_pred ceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc
Q psy18164 576 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE 655 (1212)
Q Consensus 576 ~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~ 655 (1212)
.+..+.++...++. ..++||.++.+++++-+..+..+++..|+++++...-...|+|+||++.+|.+.+..++.|+.+
T Consensus 270 ~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~ 347 (418)
T COG0849 270 DEETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRP 347 (418)
T ss_pred CcceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCc
Confidence 34456777664444 7789999999999999999999999999999998777889999999999999999999999842
Q ss_pred --ccC----------CCCchhHHHhhHHHHHHhh
Q psy18164 656 --LSK----------NLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 656 --i~~----------~~n~deaVA~GAa~~aa~l 677 (1212)
+.. ..||..+.|.|..++++..
T Consensus 348 vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 348 VRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred eEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 222 2467889999999998854
No 59
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.61 E-value=2.4e-15 Score=170.34 Aligned_cols=158 Identities=25% Similarity=0.384 Sum_probs=106.0
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC---ceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~---~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
-+||||||+|+.++.-..| ++.+. ||+|+++.. -..+|.+|+....+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~~~~G----iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG----IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE----EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred ceEEecCcccEEEEECCCC----EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 3899999999998653333 33333 999999753 3458999987766665441
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
.++..-.+|-+ .=.+++..+|+++.+.+.....-.-.+++++||+.-++.+|+++.+|
T Consensus 58 ------------~~~~Pl~~GvI----------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 58 ------------EVVRPLKDGVI----------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp ------------EEE-SEETTEE----------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred ------------EEEccccCCcc----------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 11111111211 11368888999998888764222335799999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
+..+|.+.+.|++||.|||+..++.-.. +...||+|+||||+|++++.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~------~~g~miVDIG~GtTdiavis 163 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFE------PRGSMIVDIGGGTTDIAVIS 163 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTS------SS-EEEEEE-SS-EEEEEEE
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCC------CCceEEEEECCCeEEEEEEE
Confidence 9999999999999999999988864332 45789999999999999995
No 60
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.52 E-value=4.5e-13 Score=158.40 Aligned_cols=300 Identities=16% Similarity=0.112 Sum_probs=188.6
Q ss_pred EEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec----------CcEeecHHHHHhhhhCCCchHhHhHHhcC
Q psy18164 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----------GERTFGEDAQIIGTRFPSNSYGYFLDLLG 355 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~----------~~r~~G~~A~~~~~~~p~~t~~~~k~llG 355 (1212)
|.||+||.++++++...+.|.-+ +||+|+... ...++|.+|......
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~---------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------- 58 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV---------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------- 58 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE---------eeccceeecCcccccccCCCceEEchhhhhCCCC--------------
Confidence 68999999999999976645434 466665531 345678776542100
Q ss_pred CCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHH
Q psy18164 356 KSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIER 435 (1212)
Q Consensus 356 ~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR 435 (1212)
.+.-++|+ .+|. +.--+.+..+++++....-. ....-..++|++|..++..+|
T Consensus 59 ---------~~~~~~P~----------------~~G~-i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 59 ---------GLELIYPI----------------EHGI-VVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred ---------ceEEcccc----------------cCCE-EeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHH
Confidence 01111222 1221 22233445566665543211 111235799999999998888
Q ss_pred HHHHH-HHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEE
Q psy18164 436 QSMLK-AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVS 514 (1212)
Q Consensus 436 ~al~~-Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~ 514 (1212)
+.+.+ +.+..|+..+.+++++.+|+++|+. ..-+|+|+|+++|+++.+. .| .-
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----------~~~lVVDiG~~~t~i~pv~--------~G-------~~ 165 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR-----------TTGLVVDSGDGVTHVVPVY--------DG-------YV 165 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC-----------CeEEEEECCCCeeEEEEEE--------CC-------EE
Confidence 88877 4666899999999999999988753 4689999999999998886 24 11
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce--------------eEE
Q psy18164 515 VLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE--------------HFA 580 (1212)
Q Consensus 515 vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~--------------~~i 580 (1212)
+........+||+++|+.|.+++..+... .+.. .-...++.+|+.+..-.. ...
T Consensus 166 ~~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~ 233 (371)
T cd00012 166 LPHAIKRLDLAGRDLTRYLKELLRERGYE-----LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLE 233 (371)
T ss_pred chhhheeccccHHHHHHHHHHHHHhcCCC-----ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccc
Confidence 22223346899999999999998665321 0111 112235555555321100 000
Q ss_pred EEeecccCcceEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHhcCC--CCCCccEEEEEcCCcCCHHHHHHHH
Q psy18164 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYPVEQALKSSAV--PMDVISQVILVGAGTRVPKVQEKIT 649 (1212)
Q Consensus 581 ~ie~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~Vq~~l~ 649 (1212)
..-.+-++ ..+.++.+.| .+++-+|+ .+.+.|.++|..+.. ...-++.|+|+||+|++|.+.+.|.
T Consensus 234 ~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~ 310 (371)
T cd00012 234 KTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQ 310 (371)
T ss_pred eeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHH
Confidence 01111122 2455665544 33344443 778888888887643 2334678999999999999999999
Q ss_pred HHhCC----------cccCCCCchhHHHhhHHHHHHh
Q psy18164 650 KVVGV----------ELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 650 ~~fg~----------~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
+.++. .+....++..++-+||+++|..
T Consensus 311 ~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 311 KELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 88861 1234567889999999999964
No 61
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.47 E-value=3.4e-13 Score=148.29 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCe
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV 230 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~ 230 (1212)
+.++++|+++++.++.++|.++.++|+|||++|++.||+++.+|++.||++++.++.||.|||++|+..
T Consensus 40 ~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----------- 108 (239)
T TIGR02529 40 LGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----------- 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----------
Confidence 789999999999999999988999999999999999999999999999999999999999999988631
Q ss_pred EEEEEecCCceEEEEEEE
Q psy18164 231 HVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 231 ~vlV~D~GggT~Dvsvv~ 248 (1212)
..+|+|+||||+|+++++
T Consensus 109 ~~~vvDiGggtt~i~i~~ 126 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILK 126 (239)
T ss_pred CcEEEEeCCCcEEEEEEE
Confidence 259999999999999974
No 62
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.43 E-value=2.2e-12 Score=152.69 Aligned_cols=298 Identities=17% Similarity=0.174 Sum_probs=181.1
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC---------cEeecHHHHHhhhhCCCchHhHhHHhcC
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---------ERTFGEDAQIIGTRFPSNSYGYFLDLLG 355 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~---------~r~~G~~A~~~~~~~p~~t~~~~k~llG 355 (1212)
+|+||+||.++++++.....|.- .+||+|+.... ..++|.+|.... +
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~---------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQV---------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcE---------EccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 68999999999999986654432 35888877422 235676663210 0
Q ss_pred CCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCC--ccceEEEecCCCCCHH
Q psy18164 356 KSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQI 433 (1212)
Q Consensus 356 ~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~--~i~~~VItVP~~f~~~ 433 (1212)
. ..-++|+ .++ .+.--+.+..+++++... .++. .-..++|++|...+..
T Consensus 59 ~---------~~~~~P~----------------~~G-~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~ 109 (373)
T smart00268 59 G---------LELKYPI----------------EHG-IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKS 109 (373)
T ss_pred C---------ceecCCC----------------cCC-EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHH
Confidence 0 0011222 122 223345556677776653 2222 2346899999999999
Q ss_pred HHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCe
Q psy18164 434 ERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQ 512 (1212)
Q Consensus 434 qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~ 512 (1212)
+|+.+.+.+ +..|+.-+.+++++.+|+++++ ..+-||+|+|+++|+++.+. .|
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-----------~~~~lVVDiG~~~t~v~pv~--------~G------- 163 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASG-----------RTTGLVIDSGDGVTHVVPVV--------DG------- 163 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----------CCEEEEEecCCCcceEEEEE--------CC-------
Confidence 999998887 4679999999999999998875 25689999999999999886 24
Q ss_pred EEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCC---ce------------
Q psy18164 513 VSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN---NE------------ 577 (1212)
Q Consensus 513 ~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n---~~------------ 577 (1212)
.-+........+||.++|..|.+++...-.. . +.. .-...++.+|+.+..- ..
T Consensus 164 ~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~---~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~ 231 (373)
T smart00268 164 YVLPHAIKRIDIAGRDLTDYLKELLSERGYQ---F--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSES 231 (373)
T ss_pred EEchhhheeccCcHHHHHHHHHHHHHhcCCC---C--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccc
Confidence 1122223345899999999999988762100 0 110 0112344444443210 00
Q ss_pred eEEEE-eecccCcceEEEEeHHHHHHHHHHHH---------HHHHHHHHHHHHhcCCC--CCCccEEEEEcCCcCCHHHH
Q psy18164 578 HFAQI-EGLIDEIDFKLLVTRAEFEALNEDLF---------DRVGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQ 645 (1212)
Q Consensus 578 ~~i~i-e~l~~~~d~~~~itR~efe~l~~~l~---------~~i~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq 645 (1212)
..... -.+-++.. +.+..+.| .+++.+| ..+.++|.++|..+... ..-.+.|+|+||+|++|.+.
T Consensus 232 ~~~~~~~~lpdg~~--~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~ 308 (373)
T smart00268 232 SKLEKTYELPDGNT--IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFG 308 (373)
T ss_pred cccceeEECCCCCE--EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHH
Confidence 00000 01123332 33433333 2233333 36778888888776422 22246699999999999999
Q ss_pred HHHHHHhCC--------cccCCCCchhHHHhhHHHHHHh
Q psy18164 646 EKITKVVGV--------ELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 646 ~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
++|.+.+.. .+....++..++=.||+++|..
T Consensus 309 ~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 309 ERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 999888731 2333445566777788777753
No 63
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.39 E-value=7e-13 Score=132.87 Aligned_cols=195 Identities=22% Similarity=0.267 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEE
Q psy18164 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMF 481 (1212)
Q Consensus 402 ~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv 481 (1212)
.+.+++++.++.++|.++++..-++|+.--+...+...+..+.||++++..++||||||.-.++ .+-.|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l-----------~dg~V 144 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL-----------DDGGV 144 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc-----------CCCcE
Confidence 4678999999999999999999999999988888999999999999999999999999954433 22378
Q ss_pred EEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q psy18164 482 YDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKL 561 (1212)
Q Consensus 482 ~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL 561 (1212)
+|+|||||-+||++ .|+ | -+..|..-||..|...|+-+ ++++
T Consensus 145 VDiGGGTTGIsi~k--------kGk--------V-iy~ADEpTGGtHmtLvlAG~----------ygi~----------- 186 (277)
T COG4820 145 VDIGGGTTGISIVK--------KGK--------V-IYSADEPTGGTHMTLVLAGN----------YGIS----------- 186 (277)
T ss_pred EEeCCCcceeEEEE--------cCc--------E-EEeccCCCCceeEEEEEecc----------cCcC-----------
Confidence 99999999999998 241 2 34456788888887665422 1112
Q ss_pred HHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCC
Q psy18164 562 FKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV 641 (1212)
Q Consensus 562 ~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssri 641 (1212)
+.+||..|..--...+. | ..+.|+++++.+.+.+.++..+ |.-+.|+||+|.-
T Consensus 187 ~EeAE~~Kr~~k~~~Ei------------f----------~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~ 239 (277)
T COG4820 187 LEEAEQYKRGHKKGEEI------------F----------PVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQ 239 (277)
T ss_pred HhHHHHhhhccccchhc------------c----------cchhHHHHHHHHHHHHHhccCC-----CcceEEecccccC
Confidence 24456555532111111 1 1356899999999999998766 5569999999999
Q ss_pred HHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 642 PKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 642 P~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
|.+.+..++.|+.++..+..|....-+|-|+
T Consensus 240 ~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 240 PGVEELFEKQLALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred ccHHHHHHHHhccccccCCCcceechhhhhh
Confidence 9999999999998777777666555555543
No 64
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.35 E-value=8.7e-11 Score=136.31 Aligned_cols=213 Identities=16% Similarity=0.165 Sum_probs=138.7
Q ss_pred ccceEE--EecCCCCCHHHH-HHHHHHHHHc------C------CCeeeeechhHHHHHhhcccccccCC--CCCCeEEE
Q psy18164 418 VINEAV--IIVPGYFNQIER-QSMLKAGELA------G------LKVLQLMNDYTAVALNYGIFKRKDFN--ETNPVHVM 480 (1212)
Q Consensus 418 ~i~~~V--ItVP~~f~~~qR-~al~~Aa~~A------G------l~~~~li~EptAaAl~y~~~~~~~~~--~~~~~~vl 480 (1212)
.+.+++ ...|..+...++ ..+++..... | ++.+.++.+|.+|.+++.......+. .-+...++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 589998854443 6666554221 1 12356789999998887665332110 01146789
Q ss_pred EEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q psy18164 481 FYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAK 560 (1212)
Q Consensus 481 v~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~k 560 (1212)
++|+|+||||++++.- + .+ +....+....|..++...|++++..+... ..+ ++. +
T Consensus 189 vIDIG~~TtD~~v~~~--------~------~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~~-----~~~--~~~---~ 243 (344)
T PRK13917 189 VIDFGSGTTDLDTIQN--------L------KR-VEEESFVIPKGTIDVYKRIASHISKKEEG-----ASI--TPY---M 243 (344)
T ss_pred EEEcCCCcEEEEEEeC--------c------EE-cccccccccchHHHHHHHHHHHHHhhCCC-----CCC--CHH---H
Confidence 9999999999999861 1 22 12333446789999999999888654321 122 122 1
Q ss_pred HHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcC
Q psy18164 561 LFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640 (1212)
Q Consensus 561 L~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssr 640 (1212)
+.+. |... .+.+. ...+ +.+ ++++.++++++++++...|...+.. ..+++.|+|+||+++
T Consensus 244 ie~~-------l~~g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~ 303 (344)
T PRK13917 244 LEKG-------LEYG---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGAN 303 (344)
T ss_pred HHHH-------HHcC---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHH
Confidence 2111 2111 11111 1111 122 5778889999999999999888853 347899999999998
Q ss_pred CHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 641 VPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 641 iP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+ +++.|++.|+. +...-||..|.|+|...+|..+-
T Consensus 304 l--l~~~lk~~f~~-~~~~~~p~~ANa~G~~~~g~~~~ 338 (344)
T PRK13917 304 I--FFDSLSHWYSD-VEKADESQFANVRGYYKYGELLK 338 (344)
T ss_pred H--HHHHHHHHcCC-eEEcCChHHHHHHHHHHHHHHHh
Confidence 7 88999999984 35567999999999999987554
No 65
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.21 E-value=1.2e-09 Score=130.84 Aligned_cols=224 Identities=13% Similarity=0.072 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHcCC--ccceEEEecCCCCCHHHHHHHHHHHHHc-CCCeeeeechhHHHHHhhcccccc-cCCC
Q psy18164 398 ELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQIERQSMLKAGELA-GLKVLQLMNDYTAVALNYGIFKRK-DFNE 473 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~~--~i~~~VItVP~~f~~~qR~al~~Aa~~A-Gl~~~~li~EptAaAl~y~~~~~~-~~~~ 473 (1212)
+.+..+++|+... .+.. .-..++||.|..++..+|+.+.+.+-.. |+.-+.+.+++.+++++++..... ...
T Consensus 82 d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~- 157 (414)
T PTZ00280 82 DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELG- 157 (414)
T ss_pred HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccC-
Confidence 4445566665332 1221 1235899999999999999988776544 889999999999999876432211 110
Q ss_pred CCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCC
Q psy18164 474 TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFE 553 (1212)
Q Consensus 474 ~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~ 553 (1212)
+ ..+-||+|+|+|+|+++-|- .|. . +........+||++++..|.++|.++.. .+..
T Consensus 158 g-~~tglVVDiG~~~T~i~PV~--------~G~------~-l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~ 214 (414)
T PTZ00280 158 G-TLTGTVIDSGDGVTHVIPVV--------DGY------V-IGSSIKHIPLAGRDITNFIQQMLRERGE-------PIPA 214 (414)
T ss_pred C-ceeEEEEECCCCceEEEEEE--------CCE------E-cccceEEecCcHHHHHHHHHHHHHHcCC-------CCCc
Confidence 1 34569999999999998775 241 1 1222223579999999999999865421 1111
Q ss_pred CHHHHHHHHHHHHHhhhhccCCc-----------------eeEEEEeecccCcceEEEEeHHHHH---HHHHHHH-----
Q psy18164 554 NPRAVAKLFKEAGRLKNVLSANN-----------------EHFAQIEGLIDEIDFKLLVTRAEFE---ALNEDLF----- 608 (1212)
Q Consensus 554 ~~ra~~kL~~~aek~K~~LS~n~-----------------~~~i~ie~l~~~~d~~~~itR~efe---~l~~~l~----- 608 (1212)
. . .+..++.+|+.+..-. ...+..+...++....+.|..+.|. -|+.|-+
T Consensus 215 ~--~---~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~ 289 (414)
T PTZ00280 215 E--D---ILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEW 289 (414)
T ss_pred H--H---HHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCcc
Confidence 1 0 1123555555543210 0011122212233456788887774 2444421
Q ss_pred -HHHHHHHHHHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy18164 609 -DRVGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 609 -~~i~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg 653 (1212)
..+.++|.++|..+... .+-.+.|+|+||+|.+|.+.++|.+.+.
T Consensus 290 ~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 290 TTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 14677788888776432 2335679999999999999999988876
No 66
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.18 E-value=3.4e-10 Score=126.87 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
.+.+...|+++++.++.++|..+..++++||++|+..+|+++.+|++.||+++..++.||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4678889999999999999988999999999999999999999999999999999999999999887541
Q ss_pred eEEEEEecCCceEEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv~ 248 (1212)
..+|+||||||+|+++++
T Consensus 136 -~~~vvDIGggtt~i~v~~ 153 (267)
T PRK15080 136 -NGAVVDIGGGTTGISILK 153 (267)
T ss_pred -CcEEEEeCCCcEEEEEEE
Confidence 259999999999999974
No 67
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.07 E-value=1.2e-08 Score=117.87 Aligned_cols=208 Identities=12% Similarity=0.080 Sum_probs=129.4
Q ss_pred ccceEEEecCCCCCHHHHHHHHHHHHHc---------CCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCc
Q psy18164 418 VINEAVIIVPGYFNQIERQSMLKAGELA---------GLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWS 488 (1212)
Q Consensus 418 ~i~~~VItVP~~f~~~qR~al~~Aa~~A---------Gl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt 488 (1212)
.+..+|+..|..+...+|+.+++..... -++.+.++.+|.+|.++|......... . ...++|+|+|++|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~-~-~~~~lVIDIG~~T 178 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLT-G-KEQSLIIDPGYFT 178 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCccc-C-cCcEEEEecCCCe
Confidence 4667999999999999999998876532 234467899999998888654322111 2 5678999999999
Q ss_pred eeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHh
Q psy18164 489 TTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRL 568 (1212)
Q Consensus 489 ~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~ 568 (1212)
||+.++. + ..+ +....+....|-.++-..|.+.+.+++.. +...+...+.++ ...-
T Consensus 179 tD~~~~~---------~-----~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~------~~~~~~~~i~~~---l~~g 234 (320)
T TIGR03739 179 FDWLVAR---------G-----MRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGT------PAYRDIDRIDLA---LRTG 234 (320)
T ss_pred eeeehcc---------C-----CEE-cccccCCchhHHHHHHHHHHHHHHhhcCC------CCccCHHHHHHH---HHhC
Confidence 9998774 1 123 33444556789888888888888877653 211122222211 1111
Q ss_pred hhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHH
Q psy18164 569 KNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI 648 (1212)
Q Consensus 569 K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l 648 (1212)
|.. .+ + +. .+.|+ +.++ ..+..++++..-|.+.+ + ...+++.|+|+||++. .+++.|
T Consensus 235 ~~~---------~~---~-gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l 291 (320)
T TIGR03739 235 KQP---------RI---Y-QK--PVDIK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAV 291 (320)
T ss_pred Cce---------ee---c-ce--ecCch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHH
Confidence 100 01 1 11 11122 2222 23333333333333333 1 1245899999999988 568999
Q ss_pred HHHhCC-cccCCCCchhHHHhhHHHHH
Q psy18164 649 TKVVGV-ELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 649 ~~~fg~-~i~~~~n~deaVA~GAa~~a 674 (1212)
++.|+. .+....||..|.|+|-..++
T Consensus 292 ~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 292 KAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 999984 45566889999999987665
No 68
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.05 E-value=6.8e-09 Score=123.97 Aligned_cols=312 Identities=14% Similarity=0.158 Sum_probs=177.8
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC-----cEeecHHHHHhhhhCCCchHhHhHHhcCCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 357 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~-----~r~~G~~A~~~~~~~p~~t~~~~k~llG~~ 357 (1212)
..+|-||+|+.++++++.....|- ..+||+++.... ..++|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~---------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~-------------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPR---------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RS-------------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-S---------EEEESEEEEESSSSSSSSCEETHHHHHT---GT--------------
T ss_pred CCEEEEECCCceEEEEECCCCCCC---------CcCCCccccccccccceeEEeecccccc---hh--------------
Confidence 457899999999999997555343 236888876433 34677663320 00
Q ss_pred CCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHH
Q psy18164 358 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQS 437 (1212)
Q Consensus 358 ~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~a 437 (1212)
...+.....++ .+.--+.+..+++++.... -.....-..++++.|.+++..+|+.
T Consensus 58 -----------------------~~~~~~p~~~g-~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 58 -----------------------NLELRSPIENG-VIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp -----------------------GEEEEESEETT-EESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred -----------------------heeeeeecccc-ccccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 00011111122 2222344555666665532 1111233469999999999999987
Q ss_pred HHHHHH-HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEE
Q psy18164 438 MLKAGE-LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516 (1212)
Q Consensus 438 l~~Aa~-~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl 516 (1212)
+.+.+- ..|+.-+.+++++.+|+++++.. .-||+|+|++.|.++-|- .|. -+.
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-----------tglVVD~G~~~t~v~pV~--------dG~-------~~~ 166 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGRT-----------TGLVVDIGYSSTSVVPVV--------DGY-------VLP 166 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTBS-----------SEEEEEESSS-EEEEEEE--------TTE-------E-G
T ss_pred hhhhhhcccccceeeeeecccccccccccc-----------cccccccceeeeeeeeee--------ecc-------ccc
Confidence 776654 56999999999999999887553 359999999999988774 241 111
Q ss_pred EEecCCCCChHHHHHHHHHHHHHH-HhhcccCCC---CCC-CCHHHHHHHHHHHHHhhhhc---cC------------Cc
Q psy18164 517 GVGYDRTLGGLEMQIRLRDFLGKK-FNEMKKTTK---DVF-ENPRAVAKLFKEAGRLKNVL---SA------------NN 576 (1212)
Q Consensus 517 ~~~~d~~lGG~~~D~~l~~~l~~~-~~~~~~~~~---d~~-~~~ra~~kL~~~aek~K~~L---S~------------n~ 576 (1212)
.......+||++++..|.++|.++ +.-...... ... ........-...++.+|+.+ +. ..
T Consensus 167 ~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 246 (393)
T PF00022_consen 167 HSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENP 246 (393)
T ss_dssp GGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTT
T ss_pred cccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccccccccccc
Confidence 112235799999999999999884 111000000 000 00000011111222333221 11 11
Q ss_pred eeEEEEeecccCcceEEEEeHHHHHHHHHHHHH----------------HHHHHHHHHHHhcCCCCC--CccEEEEEcCC
Q psy18164 577 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFD----------------RVGYPVEQALKSSAVPMD--VISQVILVGAG 638 (1212)
Q Consensus 577 ~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~----------------~i~~~i~~~L~~a~~~~~--~i~~ViLvGGs 638 (1212)
..... |-++. .+.+..+.|. +++.+|+ .+.++|.+++..+..... -.+.|+|+||+
T Consensus 247 ~~~~~---lPdg~--~i~~~~er~~-~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 247 EKSYE---LPDGQ--TIILGKERFR-IPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp TEEEE----TTSS--EEEESTHHHH-HHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred ceecc---ccccc--cccccccccc-ccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence 11221 22333 5666666552 3333332 577888888887754322 24689999999
Q ss_pred cCCHHHHHHHHHHhCC--------cccCCC-CchhHHHhhHHHHHHhh
Q psy18164 639 TRVPKVQEKITKVVGV--------ELSKNL-NTDEAAALGAVYKAADL 677 (1212)
Q Consensus 639 sriP~Vq~~l~~~fg~--------~i~~~~-n~deaVA~GAa~~aa~l 677 (1212)
|++|.+.++|.+.+.. ++.... ++..++=.||+++|..-
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 9999999999877641 233344 78899999999999743
No 69
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.96 E-value=8.3e-08 Score=112.65 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechhHHHHHhhccc-ccccCCCCCCe-EEEEEEcCCCceeEEEEEEEeeecccCCcccc
Q psy18164 432 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF-KRKDFNETNPV-HVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 509 (1212)
Q Consensus 432 ~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~-~~~~~~~~~~~-~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~ 509 (1212)
....+.+.++++.||+++..+.-+|.|.+=.+... ........ .. .++++|+|+++|+++++. .|
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~-~~~~~~lvdiG~~~t~l~i~~--------~g---- 208 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTY-RLTDAALVDIGATSSTLNLLH--------PG---- 208 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccc-cCceEEEEEECCCcEEEEEEE--------CC----
Confidence 45677889999999999999988888886555310 00000011 23 499999999999999997 23
Q ss_pred CCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCc
Q psy18164 510 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEI 589 (1212)
Q Consensus 510 ~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~ 589 (1212)
.+ -......+||.+|+..|.+.+ +- + ..+||+.|..-.... ..
T Consensus 209 --~~---~~~r~i~~G~~~i~~~i~~~~----~~------~-----------~~~Ae~~k~~~~~~~-----------~~ 251 (348)
T TIGR01175 209 --RM---LFTREVPFGTRQLTSELSRAY----GL------N-----------PEEAGEAKQQGGLPL-----------LY 251 (348)
T ss_pred --eE---EEEEEeechHHHHHHHHHHHc----CC------C-----------HHHHHHHHhcCCCCC-----------ch
Confidence 22 222345699999998886433 11 1 245777776422110 00
Q ss_pred ceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccC---------
Q psy18164 590 DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSK--------- 658 (1212)
Q Consensus 590 d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~--------- 658 (1212)
+ .+++++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+.+.||.++..
T Consensus 252 ~----------~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~ 321 (348)
T TIGR01175 252 D----------PEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMAL 321 (348)
T ss_pred h----------HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhccc
Confidence 0 2345566666666666666432 223346899999999999999999999999832210
Q ss_pred ----------CCCchhHHHhhHHHHH
Q psy18164 659 ----------NLNTDEAAALGAVYKA 674 (1212)
Q Consensus 659 ----------~~n~deaVA~GAa~~a 674 (1212)
..+|..++|.|.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 322 DAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred CccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 1334677888888764
No 70
>PTZ00281 actin; Provisional
Probab=98.94 E-value=2.1e-08 Score=118.35 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHcCC--ccceEEEecCCCCCHHHHHHHHH-HHHHcCCCeeeeechhHHHHHhhcccccccCCCCC
Q psy18164 399 LVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQIERQSMLK-AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETN 475 (1212)
Q Consensus 399 l~a~~L~~lk~~a~~~~~~--~i~~~VItVP~~f~~~qR~al~~-Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~ 475 (1212)
.+..+++|+... .+.. .-..++||-|.+....+|+.+.+ ..+..++.-+.+.+.+.+++++++.
T Consensus 82 ~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~---------- 148 (376)
T PTZ00281 82 DMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR---------- 148 (376)
T ss_pred HHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----------
Confidence 344556655431 2222 23468889999999999998877 4456688888999999999877542
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
.+-||+|+|++.|.++-|- .| +.+........+||.+++..|.+.|..+-. .+.. .
T Consensus 149 -~tglVVDiG~~~t~v~PV~--------dG-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~-~ 204 (376)
T PTZ00281 149 -TTGIVMDSGDGVSHTVPIY--------EG-------YALPHAILRLDLAGRDLTDYMMKILTERGY-------SFTT-T 204 (376)
T ss_pred -ceEEEEECCCceEEEEEEE--------ec-------ccchhheeeccCcHHHHHHHHHHHHHhcCC-------CCCc-H
Confidence 3569999999999977553 14 122223334579999999999988754311 1111 1
Q ss_pred HHHHHHHHHHHHhhhhccCCc------------eeEEEEe-ecccCcceEEEEeHHHH---HHHHHHHH-----HHHHHH
Q psy18164 556 RAVAKLFKEAGRLKNVLSANN------------EHFAQIE-GLIDEIDFKLLVTRAEF---EALNEDLF-----DRVGYP 614 (1212)
Q Consensus 556 ra~~kL~~~aek~K~~LS~n~------------~~~i~ie-~l~~~~d~~~~itR~ef---e~l~~~l~-----~~i~~~ 614 (1212)
.- ...++.+|+.+.--. ....... .|-|+. .+.|..+.| |-|+.|-+ ..+.++
T Consensus 205 -~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~ 278 (376)
T PTZ00281 205 -AE---REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHET 278 (376)
T ss_pred -HH---HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHH
Confidence 11 122445555533110 0001111 122222 355666555 23333321 146677
Q ss_pred HHHHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------cccCCCCchhHHHhhHHHHHH
Q psy18164 615 VEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 615 i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa 675 (1212)
|.+++..+... ..-.+.|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||++.|.
T Consensus 279 i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 279 TYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 77777766432 22246799999999999999998877641 233445667788889988886
No 71
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.93 E-value=6.8e-08 Score=112.69 Aligned_cols=183 Identities=22% Similarity=0.295 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCC-CCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccC
Q psy18164 432 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNE-TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETH 510 (1212)
Q Consensus 432 ~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~-~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~ 510 (1212)
...-....++++.|||++..+=-++.|.+-.|..... .+.. .....++++|+|+.++.++++. .|
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~-~~~~~~~~~~~~lvdiG~~~t~~~i~~--------~g----- 200 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEP-QLPDEEDAETVALVDIGASSTTVIIFQ--------NG----- 200 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHH-TST----T-EEEEEEE-SS-EEEEEEE--------TT-----
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHH-hCCcccccceEEEEEecCCeEEEEEEE--------CC-----
Confidence 3456778899999999986664444444333322111 1111 1256899999999999999987 23
Q ss_pred CeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcc
Q psy18164 511 PQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEID 590 (1212)
Q Consensus 511 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d 590 (1212)
.+. ......+||.++++.|++.+.-.+ .+|++.|..-+-..
T Consensus 201 -~~~---f~R~i~~G~~~l~~~i~~~~~i~~---------------------~~Ae~~k~~~~l~~-------------- 241 (340)
T PF11104_consen 201 -KPI---FSRSIPIGGNDLTEAIARELGIDF---------------------EEAEELKRSGGLPE-------------- 241 (340)
T ss_dssp -EEE---EEEEES-SHHHHHHHHHHHTT--H---------------------HHHHHHHHHT------------------
T ss_pred -EEE---EEEEEeeCHHHHHHHHHHhcCCCH---------------------HHHHHHHhcCCCCc--------------
Confidence 222 222357999999999987653332 23555554311000
Q ss_pred eEEEEeHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc---------cCC
Q psy18164 591 FKLLVTRAEFEALNEDLFDRVGYPVEQALKS--SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL---------SKN 659 (1212)
Q Consensus 591 ~~~~itR~efe~l~~~l~~~i~~~i~~~L~~--a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i---------~~~ 659 (1212)
+...+.+.+.++++..-|.+.++- +......|+.|+|+||++++|.+.+.|.+.+|.++ ..+
T Consensus 242 -------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~ 314 (340)
T PF11104_consen 242 -------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLD 314 (340)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--
T ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccC
Confidence 223445666666666666666652 22335579999999999999999999999998321 111
Q ss_pred C----------CchhHHHhhHHHHH
Q psy18164 660 L----------NTDEAAALGAVYKA 674 (1212)
Q Consensus 660 ~----------n~deaVA~GAa~~a 674 (1212)
. .|+.++|.|.|+..
T Consensus 315 ~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 315 PKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChhhhhhhhhHHHHHHHHhhcC
Confidence 2 26678999998864
No 72
>PTZ00004 actin-2; Provisional
Probab=98.89 E-value=6e-08 Score=114.74 Aligned_cols=235 Identities=12% Similarity=0.069 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHcC--CccceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCC
Q psy18164 398 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 474 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~--~~i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~ 474 (1212)
+.+..++.|+.. ..++ ..-..+++|-|.+.+..+|+.+.+.+ +..|+..+.+++++.+++++++.
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------- 148 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------- 148 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC---------
Confidence 344556666432 1222 22345789999999999998776654 55699999999999999977642
Q ss_pred CCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q psy18164 475 NPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 554 (1212)
Q Consensus 475 ~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~ 554 (1212)
.+-+|+|+|++.|+++-|- .| +-+.......++||++++..|.+.|..+-. .+..
T Consensus 149 --~tglVVDiG~~~t~v~pV~--------dG-------~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~- 203 (378)
T PTZ00004 149 --TTGIVLDSGDGVSHTVPIY--------EG-------YSLPHAIHRLDVAGRDLTEYMMKILHERGT-------TFTT- 203 (378)
T ss_pred --ceEEEEECCCCcEEEEEEE--------CC-------EEeecceeeecccHHHHHHHHHHHHHhcCC-------CCCc-
Confidence 3459999999999987774 24 222233334579999999999998854311 1111
Q ss_pred HHHHHHHHHHHHHhhhhccCCc------------e-eEEEEee-cccCcceEEEEeHHHHH---HHHHHH------HHHH
Q psy18164 555 PRAVAKLFKEAGRLKNVLSANN------------E-HFAQIEG-LIDEIDFKLLVTRAEFE---ALNEDL------FDRV 611 (1212)
Q Consensus 555 ~ra~~kL~~~aek~K~~LS~n~------------~-~~i~ie~-l~~~~d~~~~itR~efe---~l~~~l------~~~i 611 (1212)
... ...++.+|+.+..-. . ....... |-|+. .+.|..+.|. -++.|- ...+
T Consensus 204 -~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi 277 (378)
T PTZ00004 204 -TAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGI 277 (378)
T ss_pred -HHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCCh
Confidence 111 112344444432100 0 0001111 22332 3455665552 344442 2346
Q ss_pred HHHHHHHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------cccCCCCchhHHHhhHHHHHH
Q psy18164 612 GYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 612 ~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa 675 (1212)
.++|.+++..+..+ ..-...|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||++.|.
T Consensus 278 ~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 278 HELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 67778888776532 22346799999999999999999877641 233345666777788888775
No 73
>PTZ00466 actin-like protein; Provisional
Probab=98.87 E-value=1.2e-07 Score=111.75 Aligned_cols=236 Identities=11% Similarity=0.093 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCC
Q psy18164 398 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 476 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 476 (1212)
+.+..+++|+.+... ....-..+++|-|+.++..+|+.+.+.+ +..|+.-+.+.+.+.+++++++.
T Consensus 87 d~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------- 153 (380)
T PTZ00466 87 NDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------- 153 (380)
T ss_pred HHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-----------
Confidence 344556666543211 1112345888999999999999876654 55688888999999999877642
Q ss_pred eEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHH
Q psy18164 477 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 556 (1212)
Q Consensus 477 ~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~r 556 (1212)
.+-+|+|+|.+.|.++-|- .| +-+........+||++++.-|.+.+.+. ....+. .
T Consensus 154 ~tglVVD~G~~~t~v~PV~--------~G-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~----~ 209 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSIY--------EG-------YSITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT----S 209 (380)
T ss_pred ceEEEEeCCCCceEEEEEE--------CC-------EEeecceeEecCchhHHHHHHHHHHHhc-----CCCCCc----H
Confidence 3569999999999987664 24 2222233345799999999999887542 110010 1
Q ss_pred HHHHHHHHHHHhhhhccC---C--------ceeEEEEe-ecccCcceEEEEeHHHHH---HHHHHHH-----HHHHHHHH
Q psy18164 557 AVAKLFKEAGRLKNVLSA---N--------NEHFAQIE-GLIDEIDFKLLVTRAEFE---ALNEDLF-----DRVGYPVE 616 (1212)
Q Consensus 557 a~~kL~~~aek~K~~LS~---n--------~~~~i~ie-~l~~~~d~~~~itR~efe---~l~~~l~-----~~i~~~i~ 616 (1212)
. -+..++.+|+.+.- + ........ .|-|+. .+.|..+.|. -|+.|-+ ..+.++|.
T Consensus 210 ~---~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~ 284 (380)
T PTZ00466 210 A---EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIV 284 (380)
T ss_pred H---HHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHH
Confidence 1 11223444544321 0 00000111 122232 3556666662 2333311 14567777
Q ss_pred HHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------cccCCCCchhHHHhhHHHHHH
Q psy18164 617 QALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 617 ~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa 675 (1212)
+++..+..+ ..-...|+|+||+|.+|.+.++|...+.. .+....++..++=+||+++|.
T Consensus 285 ~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 285 TSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 777776432 22357799999999999999999877741 233344566677788888875
No 74
>PTZ00452 actin; Provisional
Probab=98.86 E-value=1.5e-07 Score=110.99 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCe
Q psy18164 399 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV 477 (1212)
Q Consensus 399 l~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~ 477 (1212)
.+..+++|+....- .....-..+++|-|.+.+..+|+.|.+.+ +..++..+.+.+.+.+++++++. .
T Consensus 81 ~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-----------~ 148 (375)
T PTZ00452 81 DIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-----------T 148 (375)
T ss_pred HHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-----------c
Confidence 33456666543210 11122346899999999999998886655 44588888899999999877532 3
Q ss_pred EEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHH
Q psy18164 478 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRA 557 (1212)
Q Consensus 478 ~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra 557 (1212)
+-||+|+|.|.|+++-|- .| +-+........+||.+++.-|.+.|..+ .. .+.. ...
T Consensus 149 tglVVDiG~~~t~v~PV~--------dG-------~~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~--~~~~-~~~ 205 (375)
T PTZ00452 149 IGLVVDSGEGVTHCVPVF--------EG-------HQIPQAITKINLAGRLCTDYLTQILQEL-----GY--SLTE-PHQ 205 (375)
T ss_pred eeeeecCCCCcceEEEEE--------CC-------EEeccceEEeeccchHHHHHHHHHHHhc-----CC--CCCC-HHH
Confidence 569999999999987664 24 2222222335799999999998887542 11 1111 110
Q ss_pred HHHHHHHHHHhhhhccCCce------------eEEEE-eecccCcceEEEEeHHHHH---HHHHHHH-----HHHHHHHH
Q psy18164 558 VAKLFKEAGRLKNVLSANNE------------HFAQI-EGLIDEIDFKLLVTRAEFE---ALNEDLF-----DRVGYPVE 616 (1212)
Q Consensus 558 ~~kL~~~aek~K~~LS~n~~------------~~i~i-e~l~~~~d~~~~itR~efe---~l~~~l~-----~~i~~~i~ 616 (1212)
. ..++.+|+.++--.. ..... -.|-|+. .+.|..+.|. -|++|-+ ..+.++|.
T Consensus 206 -~---~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~ 279 (375)
T PTZ00452 206 -R---IIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAY 279 (375)
T ss_pred -H---HHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHH
Confidence 1 113334444321100 00000 1122332 3567777662 2333321 24567777
Q ss_pred HHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------cccCCCCchhHHHhhHHHHHH
Q psy18164 617 QALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 617 ~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa 675 (1212)
+++..+... ..-.+.|+|+||+|.+|.+.++|.+.+.. ++..+.+...++=+|+++.|.
T Consensus 280 ~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 280 SSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 887776432 33356899999999999999999877641 223344556677788888885
No 75
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.64 E-value=4.2e-08 Score=99.09 Aligned_cols=83 Identities=23% Similarity=0.240 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEE
Q psy18164 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMF 234 (1212)
Q Consensus 155 ~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV 234 (1212)
.+++++++.+++.+|..++++.-++|..--....+...+..+.||+.++.+++||+|||.-..+. .-.|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-----------dg~V 144 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-----------DGGV 144 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC-----------CCcE
Confidence 57888999999999999999999999998777778888999999999999999999999644432 2379
Q ss_pred EecCCceEEEEEEE
Q psy18164 235 YDMGAWSTTVSIVS 248 (1212)
Q Consensus 235 ~D~GggT~Dvsvv~ 248 (1212)
+|+||||+-+|+++
T Consensus 145 VDiGGGTTGIsi~k 158 (277)
T COG4820 145 VDIGGGTTGISIVK 158 (277)
T ss_pred EEeCCCcceeEEEE
Confidence 99999999999986
No 76
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.58 E-value=3.3e-07 Score=109.84 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 188 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 188 r~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+.+.+|++.||+++..++.||.|+|.++..... .+..++|+||||||||++++.
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e------~~~gv~vvDiGggtTdisv~~ 222 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE------RELGVCVVDIGGGTMDIAVYT 222 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh------hhcCeEEEEeCCCceEEEEEE
Confidence 3345679999999999999999999998864322 234699999999999999996
No 77
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.45 E-value=1.5e-06 Score=102.76 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 185 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
....+.+.+|++.||+++..++.||.|+|++|..... ....++|+|+||||+|++++.
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~------~~~~~~vvDiG~gtt~i~i~~ 214 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE------KELGVCLIDIGGGTTDIAVYT 214 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch------hcCCEEEEEeCCCcEEEEEEE
Confidence 3456788899999999999999999999998854221 234699999999999999985
No 78
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.45 E-value=2.1e-06 Score=98.96 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=97.6
Q ss_pred CeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChH
Q psy18164 448 KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 527 (1212)
Q Consensus 448 ~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~ 527 (1212)
..+.++.|+.||.+.+..... + ...++|+|+||+|+|++++. | ..-.+-.+.+...+|-.
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~----~--~~~~lVVDIGG~T~Dv~~v~---------~-----~~~~~~~~~~~~~~Gvs 200 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD----E--DESVLVVDIGGRTTDVAVVR---------G-----GLPDISKCSGTPEIGVS 200 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-----T--TSEEEEEEE-SS-EEEEEEE---------G-----GG--EEEEEEETTSSTH
T ss_pred eeEEEEcccHHHHHHHHHhhc----c--cCcEEEEEcCCCeEEeeeec---------C-----CccccchhccCCchhHH
Confidence 356789999999988765421 1 46799999999999999886 1 01112334555689998
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHH
Q psy18164 528 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDL 607 (1212)
Q Consensus 528 ~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l 607 (1212)
.+-..+.+.+...... . +.....++.+.. +-+..++. ...+.+ .++++.+.++..
T Consensus 201 ~~~~~I~~~l~~~~~~-------~--s~~~~~~ii~~~-~~~~~~~~----------~i~~~~-----~~~~v~~~i~~~ 255 (318)
T PF06406_consen 201 DLYDAIAQALRSAGID-------T--SELQIDDIIRNR-KDKGYLRQ----------VINDED-----VIDDVSEVIEEA 255 (318)
T ss_dssp HHHHHHHHHTT--SBH-------H--HHHHHHHHHHTT-T-HHHHHH----------HSSSHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-------C--cHHHHHHHHHhh-hccceecc----------cccchh-----hHHHHHHHHHHH
Confidence 8888877776652110 0 011111111100 00011110 001111 134444555555
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC---CcccCCCCchhHHHhhHH
Q psy18164 608 FDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG---VELSKNLNTDEAAALGAV 671 (1212)
Q Consensus 608 ~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg---~~i~~~~n~deaVA~GAa 671 (1212)
++++.+-|.+.+. ...+++.|+|+||++. .+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 256 ~~~l~~~i~~~~~----~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 256 VEELINRILRELG----DFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHT----TS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHh----hhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 5555555555543 2347899999999975 57899999987 366778899999999954
No 79
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=98.43 E-value=1.3e-06 Score=103.60 Aligned_cols=149 Identities=16% Similarity=0.097 Sum_probs=99.2
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec----------CceeEccchhhhhccCCCChHHHHHHHhC
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----------GERTFGEDAQIIGTRFPSNSYGYFLDLLG 108 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~----------~~~~iG~~A~~~~~~~p~~~~~~~KrllG 108 (1212)
|.||+||.++++++..++.+.-++ ||+++... ...++|.+|...... .
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~~---------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~------------ 59 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVVF---------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-G------------ 59 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceEe---------eccceeecCcccccccCCCceEEchhhhhCCCC-c------------
Confidence 689999999999998766444344 66766532 345677766432110 0
Q ss_pred CCCCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHH
Q psy18164 109 KSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIER 188 (1212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr 188 (1212)
..-..|+ .+|.+ .--+.+..+++++....-.. ...-..+++++|..++..+|
T Consensus 60 ----------~~~~~P~-------~~G~i----------~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 60 ----------LELIYPI-------EHGIV----------VDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred ----------eEEcccc-------cCCEE----------eCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHH
Confidence 0001121 12222 12245666777766542111 11235699999999998888
Q ss_pred HHHHHH-HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 189 QSMLKA-GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 189 ~~l~~A-a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
+.+.+. .+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----------~~~lVVDiG~~~t~i~pv~ 161 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR-----------TTGLVVDSGDGVTHVVPVY 161 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC-----------CeEEEEECCCCeeEEEEEE
Confidence 887775 577899999999999999998764 3689999999999987765
No 80
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=98.43 E-value=2.8e-06 Score=100.81 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=102.0
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC---------ceeEccchhhhhccCCCChHHHHHHHh
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---------ERTFGEDAQIIGTRFPSNSYGYFLDLL 107 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~---------~~~iG~~A~~~~~~~p~~~~~~~Krll 107 (1212)
++|+||+||.++++++..+..+.-+ +||+|+.... ..++|.+|..... .
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~---------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~----~--------- 59 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV---------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRG----G--------- 59 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE---------ccceeeEecccccccCCCcceEecchhhhcCC----C---------
Confidence 4689999999999998866544323 4888887422 2456766532110 0
Q ss_pred CCCCCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCC--ccccEEEccCCCCCH
Q psy18164 108 GKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQ 185 (1212)
Q Consensus 108 G~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~--~~~~~VitVPa~f~~ 185 (1212)
..-..|+ .+|.+ .--+.+..+++++... .++. .-..++++.|...+.
T Consensus 60 -----------~~~~~P~-------~~G~i----------~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 60 -----------LELKYPI-------EHGIV----------ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred -----------ceecCCC-------cCCEE----------eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 0011221 12222 2236677777777764 2222 224689999999999
Q ss_pred HHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 186 IERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 186 ~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+|+.+.+.+ +..|++.+.++++|.+|+++++. .+.||+|+|+++++++.+.
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~-----------~~~lVVDiG~~~t~v~pv~ 161 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASGR-----------TTGLVIDSGDGVTHVVPVV 161 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCC-----------CEEEEEecCCCcceEEEEE
Confidence 9999998887 57799999999999999988761 3689999999999998876
No 81
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.36 E-value=5.5e-05 Score=83.41 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCC-CCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeE
Q psy18164 435 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNET-NPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQV 513 (1212)
Q Consensus 435 R~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~-~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~ 513 (1212)
-....+|+++|||+..-+==|.-|.-=+|... -..+... ....++++|+|+.++.+.++. .|
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~-~~~~~~~~a~~~vav~~Igat~s~l~vi~--------~g-------- 213 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLL-ASQFGPEEAAMKVAVFDIGATSSELLVIQ--------DG-------- 213 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHH-HHHhCCchhhhhheeeeecccceEEEEEE--------CC--------
Confidence 44567899999999855544444444344411 1122222 134579999999999999987 23
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEE
Q psy18164 514 SVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKL 593 (1212)
Q Consensus 514 ~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~ 593 (1212)
..-+..+..+||+.+...|...+-- + ...++.+|....--. |+..
T Consensus 214 -k~ly~r~~~~g~~Qlt~~i~r~~~L----------~-----------~~~a~~~k~~~~~P~-------------~y~~ 258 (354)
T COG4972 214 -KILYTREVPVGTDQLTQEIQRAYSL----------T-----------EEKAEEIKRGGTLPT-------------DYGS 258 (354)
T ss_pred -eeeeEeeccCcHHHHHHHHHHHhCC----------C-----------hhHhHHHHhCCCCCC-------------chhH
Confidence 1223345789999999888654321 1 112445554332111 1111
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy18164 594 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 594 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg 653 (1212)
+-+.....++.++|...|+--+...+ ..+|++++|.||+.++-.+.+.|.+..+
T Consensus 259 ----~vl~~f~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 259 ----EVLRPFLGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 11122333444444444444444443 5589999999999999999999999987
No 82
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.35 E-value=9.8e-06 Score=90.23 Aligned_cols=173 Identities=14% Similarity=0.190 Sum_probs=99.8
Q ss_pred eeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHH
Q psy18164 451 QLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQ 530 (1212)
Q Consensus 451 ~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D 530 (1212)
..++|.+|-+..-....+ ..=.|+|+||..+-+.+++ . | .+.-.........|+..|.
T Consensus 73 ~~~~ei~~~~~g~~~~~~--------~~~~vidiGgqd~k~i~~~-~-------g------~~~~~~~n~~ca~Gtg~f~ 130 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP--------EARGVIDIGGQDSKVIKID-D-------G------KVDDFTMNDKCAAGTGRFL 130 (248)
T ss_pred CceEEhhHHHHHHHHHCC--------CCCEEEEecCCeeEEEEEC-C-------C------cEeeeeecCcccccccHHH
Confidence 367788877654322222 1125999999988887775 2 3 2322223444567777787
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEee-cccCcceEEEEeHHHHHHHHHHHHH
Q psy18164 531 IRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG-LIDEIDFKLLVTRAEFEALNEDLFD 609 (1212)
Q Consensus 531 ~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~-l~~~~d~~~~itR~efe~l~~~l~~ 609 (1212)
..+++.+--.+. .+..+ +.+.+....-+....+..+. +.... .--.++ ++++..+++
T Consensus 131 e~~a~~l~~~~~--------------e~~~~---~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~~ 188 (248)
T TIGR00241 131 EVTARRLGVSVE--------------ELGSL---AEKADRKAKISSMCTVFAESELISLL--AAGVKK---EDILAGVYE 188 (248)
T ss_pred HHHHHHcCCCHH--------------HHHHH---HhcCCCCCCcCCEeEEEechhHHHHH--HCCCCH---HHHHHHHHH
Confidence 776655431111 11111 11111111112222222221 11100 011233 355566666
Q ss_pred HHHHHHHHHHHhcCCCCCCcc-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 610 RVGYPVEQALKSSAVPMDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 610 ~i~~~i~~~L~~a~~~~~~i~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
.+..-+.+.+...+ ++ .|+|.||.++.|.+.+.+.+.+|.++..+-++..+.|+|||+
T Consensus 189 ~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 189 SIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 66666666554433 44 799999999999999999999998888889999999999997
No 83
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.28 E-value=7.8e-06 Score=95.72 Aligned_cols=63 Identities=30% Similarity=0.291 Sum_probs=50.9
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 176 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 176 VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
++++|..+ -+.+++|.+.+|+++..++-+|-|+|.+....... .-.++++||||||+|+++++
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEk------elGv~lIDiG~GTTdIai~~ 221 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEK------ELGVALIDIGGGTTDIAIYK 221 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccH------hcCeEEEEeCCCcEEEEEEE
Confidence 45555433 45689999999999999999999999877654443 34699999999999999975
No 84
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.23 E-value=4.2e-05 Score=91.00 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=114.4
Q ss_pred EEEecCceeEEEEEEeCCCCeEEecCCCCCcc-ceEEEE-EecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRK-TPTLVA-FHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~-~PS~V~-f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
+-||.||.+++++++.+..|.-+..+..+++. +.++.. -..+.+++|.++...... +.
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~------------------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL------------------- 68 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-cc-------------------
Confidence 78999999999999988778777777777664 444332 123445566655432100 00
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHH-HHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYA-SVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a-~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
.........+. +.-=+...++.+|+...- .......-..+++|-|..+....|..+.+.+
T Consensus 69 ------------------~~~~~p~~~g~-i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~ 129 (444)
T COG5277 69 ------------------LELRYPIENGI-ILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELL 129 (444)
T ss_pred ------------------ceeecccccCc-cCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHH
Confidence 00111111111 111122334444444432 1111122336999999999999888766554
Q ss_pred -HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 443 -ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 443 -~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
+...+..+.+..++.+++++.+.. ..+-+|+|+|.+.|+++=|- .| +.+......
T Consensus 130 fE~~~vp~~~~~~~~~l~~ya~g~~---------~~~g~ViD~G~~~t~v~PV~--------DG-------~~l~~a~~r 185 (444)
T COG5277 130 FETLNVPALYLAIQAVLSLYASGSS---------DETGLVIDSGDSVTHVIPVV--------DG-------IVLPKAVKR 185 (444)
T ss_pred HHhcCCcceEeeHHHHHHHHhcCCC---------CCceEEEEcCCCceeeEeee--------cc-------cccccccee
Confidence 444666666666666666554332 13689999999999987664 24 223333334
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKF 541 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~ 541 (1212)
..+||++++..|.+.|....
T Consensus 186 i~~gG~~it~~l~~lL~~~~ 205 (444)
T COG5277 186 IDIGGRDITDYLKKLLREKY 205 (444)
T ss_pred eecCcHHHHHHHHHHHhhcc
Confidence 57999999999999888853
No 85
>KOG0679|consensus
Probab=98.17 E-value=0.00011 Score=82.12 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHhhcccccccCCCCCC
Q psy18164 398 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA-GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 476 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 476 (1212)
+++.++++|..+.-- +.+-.-.-++||-|++=+++.|+.+.+. .+...+....|..+++++|++-| .
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-----------r 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-----------R 153 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-----------C
Confidence 456677777764221 1122224589999999889998877665 45567788888888888887643 2
Q ss_pred eEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHH
Q psy18164 477 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 540 (1212)
Q Consensus 477 ~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 540 (1212)
.+-||+|+|++++.|+=+. .| .+-..++.. ..+||+-++..+.+.|..+
T Consensus 154 stalVvDiGa~~~svsPV~--------DG------~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPVH--------DG------YVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred CceEEEEecCCCceeeeee--------cc------eEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 4579999999999998765 24 232333333 5899999999999999877
No 86
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.84 E-value=0.00017 Score=84.03 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=48.7
Q ss_pred EEEccCCCCCHHHH-HHHHHHHHHc------------CCceEEEecchhHHHHHhhhhcccCC--CCCCCeEEEEEecCC
Q psy18164 175 AVIIVPGYFNQIER-QSMLKAGELA------------GLKVLQLMNDYTAVALNYGIFKRKDF--NETNPVHVMFYDMGA 239 (1212)
Q Consensus 175 ~VitVPa~f~~~qr-~~l~~Aa~~A------------Gl~~~~li~EP~AAal~y~~~~~~~~--~~~~~~~vlV~D~Gg 239 (1212)
+|.+.|+.+...++ ..+++..... -+..+.+++||.+|.+.+........ ..-....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44699998854443 5666655321 12356789999999887765432110 011234789999999
Q ss_pred ceEEEEEEE
Q psy18164 240 WSTTVSIVS 248 (1212)
Q Consensus 240 gT~Dvsvv~ 248 (1212)
||+|++++.
T Consensus 195 ~TtD~~v~~ 203 (344)
T PRK13917 195 GTTDLDTIQ 203 (344)
T ss_pred CcEEEEEEe
Confidence 999999985
No 87
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=97.81 E-value=7.1e-05 Score=86.64 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=57.3
Q ss_pred ccccEEEccCCCCCHHHHHHHHHHHHHc---------CCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCce
Q psy18164 171 VINEAVIIVPGYFNQIERQSMLKAGELA---------GLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWS 241 (1212)
Q Consensus 171 ~~~~~VitVPa~f~~~qr~~l~~Aa~~A---------Gl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT 241 (1212)
.+..+|++.|..+...+|..+++..... -+..+.+++||.+|.+.+...+..... ....++|+|+||+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~--~~~~~lVIDIG~~T 178 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLT--GKEQSLIIDPGYFT 178 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCccc--CcCcEEEEecCCCe
Confidence 3557999999999988999998887531 335678899999998877653321111 34578999999999
Q ss_pred EEEEEEE
Q psy18164 242 TTVSIVS 248 (1212)
Q Consensus 242 ~Dvsvv~ 248 (1212)
+|+.++.
T Consensus 179 tD~~~~~ 185 (320)
T TIGR03739 179 FDWLVAR 185 (320)
T ss_pred eeeehcc
Confidence 9998773
No 88
>PTZ00280 Actin-related protein 3; Provisional
Probab=97.76 E-value=0.00048 Score=82.75 Aligned_cols=96 Identities=13% Similarity=-0.035 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
+.+..+++|+....- .....-..+++|.|..++..+|+.+.+.+ +..|++.+.+..+|.+|++++....... .....
T Consensus 82 d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~-~~~g~ 159 (414)
T PTZ00280 82 DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK-ELGGT 159 (414)
T ss_pred HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhccccccc-ccCCc
Confidence 566667776543211 11111235899999999999999988877 5559999999999999998763321110 00012
Q ss_pred eEEEEEecCCceEEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+-||+|+|+|+++++.|-
T Consensus 160 ~tglVVDiG~~~T~i~PV~ 178 (414)
T PTZ00280 160 LTGTVIDSGDGVTHVIPVV 178 (414)
T ss_pred eeEEEEECCCCceEEEEEE
Confidence 3569999999999987664
No 89
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=97.73 E-value=0.002 Score=81.40 Aligned_cols=273 Identities=16% Similarity=0.174 Sum_probs=154.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHcC--------------CccceEEEecCCCCCHHHHHHHHHHHHHc--------CCC-
Q psy18164 392 ELYHVEELVAMLLHKAREYASVSAG--------------QVINEAVIIVPGYFNQIERQSMLKAGELA--------GLK- 448 (1212)
Q Consensus 392 ~~~~~eel~a~~L~~lk~~a~~~~~--------------~~i~~~VItVP~~f~~~qR~al~~Aa~~A--------Gl~- 448 (1212)
-.||=..++.++|..+.-.|--+.+ ...+.+++|||+.....+|+.+++.++.| |..
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~ 494 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHP 494 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566677777777777777655543 23567999999999999999988887765 421
Q ss_pred --------------------eeeeechhHHHHHhhc------------------ccccccC-----CCCCCeEEEEEEcC
Q psy18164 449 --------------------VLQLMNDYTAVALNYG------------------IFKRKDF-----NETNPVHVMFYDMG 485 (1212)
Q Consensus 449 --------------------~~~li~EptAaAl~y~------------------~~~~~~~-----~~~~~~~vlv~D~G 485 (1212)
+.-=-+|.|+.=+=|. +.+.... .....-+|.-+|+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIG 574 (1002)
T PF07520_consen 495 WDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIG 574 (1002)
T ss_pred CCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecC
Confidence 0001233333322111 1111110 11124579999999
Q ss_pred CCceeEEEEEEEeeecccCCccccCCeEEEE----EEecCCCCChHHHHHHH-HHHHHHHHhhccc-C------------
Q psy18164 486 AWSTTVSIVSYQVVKTKERGFVETHPQVSVL----GVGYDRTLGGLEMQIRL-RDFLGKKFNEMKK-T------------ 547 (1212)
Q Consensus 486 ggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl----~~~~d~~lGG~~~D~~l-~~~l~~~~~~~~~-~------------ 547 (1212)
|||||..|-.|.... |. .....+. -..| -.+.|+||=..+ ..++...+...-+ .
T Consensus 575 GGTTDL~It~Y~ld~----G~---g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~L 646 (1002)
T PF07520_consen 575 GGTTDLMITQYRLDD----GQ---GSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRL 646 (1002)
T ss_pred CCcceeeEEEEEecc----CC---cceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHH
Confidence 999999999987332 20 1112221 1122 457888885544 4555555443110 0
Q ss_pred -CCCCCCCH-H-------------HHHHHHHHHHHhhhhccCCceeEEEEeec---------------------------
Q psy18164 548 -TKDVFENP-R-------------AVAKLFKEAGRLKNVLSANNEHFAQIEGL--------------------------- 585 (1212)
Q Consensus 548 -~~d~~~~~-r-------------a~~kL~~~aek~K~~LS~n~~~~i~ie~l--------------------------- 585 (1212)
+.+-.... + ...+++.++|..=.. +........+..+
T Consensus 647 fG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~ 725 (1002)
T PF07520_consen 647 FGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPD 725 (1002)
T ss_pred hCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCC
Confidence 11100000 0 123455555553221 1111111111111
Q ss_pred ccCcceEEEEeHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc------
Q psy18164 586 IDEIDFKLLVTRAEFEALNE---DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL------ 656 (1212)
Q Consensus 586 ~~~~d~~~~itR~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i------ 656 (1212)
++=.|+.+.|+..++...+- -.+..+..-+-+++.. -+-|-++|.|--||+|.||.++++.....+
T Consensus 726 Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l 800 (1002)
T PF07520_consen 726 FDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPL 800 (1002)
T ss_pred cceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEec
Confidence 12245568899999988664 3444444444444443 246789999999999999999999975322
Q ss_pred --------------cCCCCchhHHHhhHHHHHHhhc
Q psy18164 657 --------------SKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 657 --------------~~~~n~deaVA~GAa~~aa~ls 678 (1212)
.+--||-..||.||.+.+....
T Consensus 801 ~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 801 HGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 2345899999999998877655
No 90
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.69 E-value=0.00028 Score=82.57 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=54.8
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHH--------HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeE
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKAGE--------LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTV 491 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~Aa~--------~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dv 491 (1212)
.-.+||.+...-++-++.+..+.. .||+++-.++. |-|++.+... .. + ...++++|||||||++
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-eE-----k-e~gVa~IDIGgGTT~i 160 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-EE-----R-NTRVLNIDIGGGTANY 160 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-hh-----c-cCceEEEEeCCCceEE
Confidence 346788877644444443333211 26777666666 8777765542 21 2 6789999999999999
Q ss_pred EEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHH
Q psy18164 492 SIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQ 530 (1212)
Q Consensus 492 svv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D 530 (1212)
+++. .| . +.+.....+||+.+.
T Consensus 161 aVf~--------~G------~---l~~T~~l~vGG~~IT 182 (475)
T PRK10719 161 ALFD--------AG------K---VIDTACLNVGGRLIE 182 (475)
T ss_pred EEEE--------CC------E---EEEEEEEecccceEE
Confidence 9997 24 2 233334678998874
No 91
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.57 E-value=0.0068 Score=67.81 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=41.9
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhCCccc-CCCCchhHHHhhHHHHHHh
Q psy18164 630 SQVILVGAGTRVPKVQEKITKVVGVELS-KNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 630 ~~ViLvGGssriP~Vq~~l~~~fg~~i~-~~~n~deaVA~GAa~~aa~ 676 (1212)
..|+|.||.++.|.+.+.+++.+|.++. .+.+|..+-|+|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999997766 5778999999999999964
No 92
>KOG0676|consensus
Probab=97.52 E-value=0.00075 Score=77.69 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=100.8
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCce-eEEEEEEEe
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWST-TVSIVSYQV 498 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~-dvsvv~~~~ 498 (1212)
.-+++|-|+.+..+-|+.+-+..-. -|++-.+.=..-|.. |+..+ .+=+|+|+|.|-+ .+-|++
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE-~fnvpa~yva~qavl--ya~g~---------ttG~VvD~G~gvt~~vPI~e--- 164 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFE-TFNVPALYVAIQAVL--YASGR---------TTGLVVDSGDGVTHVVPIYE--- 164 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhh-hcCccHhHHHHHHHH--HHcCC---------eeEEEEEcCCCceeeeeccc---
Confidence 4689999999999999887764322 234433332223323 54432 3469999999966 444554
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHHHHHHHHhhhhccC---
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFE-NPRAVAKLFKEAGRLKNVLSA--- 574 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~-~~ra~~kL~~~aek~K~~LS~--- 574 (1212)
| +.+........+||+++..-|...|.+. .. .... ..+ .-++.+|+.|+.
T Consensus 165 ------G-------~~lp~ai~~ldl~G~dlt~~l~~~L~~~-----g~--s~~~~~~~------eIv~diKeklCyval 218 (372)
T KOG0676|consen 165 ------G-------YALPHAILRLDLAGRDLTDYLLKQLRKR-----GY--SFTTSAEF------EIVRDIKEKLCYVAL 218 (372)
T ss_pred ------c-------cccchhhheecccchhhHHHHHHHHHhc-----cc--ccccccHH------HHHHHhHhhhccccc
Confidence 4 3344445567899999998777666651 11 1111 111 112333333321
Q ss_pred ---------CceeEEEEeecccCcceEEEEeHHHHH---HHHHHH-----HHHHHHHHHHHHHhc--CCCCCCccEEEEE
Q psy18164 575 ---------NNEHFAQIEGLIDEIDFKLLVTRAEFE---ALNEDL-----FDRVGYPVEQALKSS--AVPMDVISQVILV 635 (1212)
Q Consensus 575 ---------n~~~~i~ie~l~~~~d~~~~itR~efe---~l~~~l-----~~~i~~~i~~~L~~a--~~~~~~i~~ViLv 635 (1212)
+....+....-..|... +.+.-+.|. -+++|- ...+-..+-+.+.++ ++...-...|+|+
T Consensus 219 d~~~e~~~~~~~~~l~~~y~lPDg~~-i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLs 297 (372)
T KOG0676|consen 219 DFEEEEETANTSSSLESSYELPDGQK-ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLS 297 (372)
T ss_pred ccchhhhcccccccccccccCCCCCE-EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEe
Confidence 11111111100112222 444444332 223321 122233333333333 3333445679999
Q ss_pred cCCcCCHHHHHHHHHHhC
Q psy18164 636 GAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 636 GGssriP~Vq~~l~~~fg 653 (1212)
||+|-+|.+-+++.+-..
T Consensus 298 GGtT~~pGl~~Rl~kEl~ 315 (372)
T KOG0676|consen 298 GGTTMFPGLADRLQKELQ 315 (372)
T ss_pred CCcccchhHHHHHHHHHh
Confidence 999999999998887654
No 93
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=97.49 E-value=0.001 Score=79.61 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=91.5
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC-----ceeEccchhhhhccCCCChHHHHHHHhCCC
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 110 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~-----~~~iG~~A~~~~~~~p~~~~~~~KrllG~~ 110 (1212)
..+|-||+|+.++++++..+..|-.+ +||++..... ...+|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v---------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~-------------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV---------IPSVVGRPRDKNSSNDYYVGDEALSP---RS-------------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE---------EESEEEEESSSSSSSSCEETHHHHHT---GT--------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc---------CCCccccccccccceeEEeecccccc---hh--------------
Confidence 56789999999999999755433223 5888876432 34566552210 00
Q ss_pred CCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHH
Q psy18164 111 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQS 190 (1212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~ 190 (1212)
...+.. ....|.... -+.+..+++++.... -.....-..++++.|..++..+|+.
T Consensus 58 --------------~~~~~~---------p~~~g~i~~-~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 58 --------------NLELRS---------PIENGVIVD-WDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp --------------GEEEEE---------SEETTEESS-HHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred --------------heeeee---------ecccccccc-ccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 000000 001121122 245566666665542 1111223469999999999999998
Q ss_pred HHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEE
Q psy18164 191 MLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 191 l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv 247 (1212)
+.+.+ +..|++.+.++++|.+|+++++.. +-||+|+|++.+.|+-|
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-----------tglVVD~G~~~t~v~pV 159 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGRT-----------TGLVVDIGYSSTSVVPV 159 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTBS-----------SEEEEEESSS-EEEEEE
T ss_pred hhhhhhcccccceeeeeecccccccccccc-----------cccccccceeeeeeeee
Confidence 77776 577999999999999999887642 45999999999987655
No 94
>PTZ00004 actin-2; Provisional
Probab=97.45 E-value=0.002 Score=76.46 Aligned_cols=83 Identities=8% Similarity=0.016 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhcC--CccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 227 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~--~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~ 227 (1212)
+.+..++.|+.. ..++ ..-..+++|-|..++..+|+.+.+.+ +..|++.+.++.+|.+|+++++.
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------- 148 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------- 148 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC---------
Confidence 456666766432 1222 22345789999999999998777766 67799999999999999987652
Q ss_pred CCeEEEEEecCCceEEEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv 247 (1212)
.+-+|+|+|++.++++-+
T Consensus 149 --~tglVVDiG~~~t~v~pV 166 (378)
T PTZ00004 149 --TTGIVLDSGDGVSHTVPI 166 (378)
T ss_pred --ceEEEEECCCCcEEEEEE
Confidence 256999999999988655
No 95
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.39 E-value=0.0087 Score=69.53 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=43.3
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHH
Q psy18164 630 SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 630 ~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa 675 (1212)
+.|+++||.++.+.+.+.+++.+|.++..+.+|..+-|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999999985
No 96
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.35 E-value=0.0015 Score=76.58 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=43.6
Q ss_pred cEEEccCCCCCHHHHHHHHHHHHH------------cCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCce
Q psy18164 174 EAVIIVPGYFNQIERQSMLKAGEL------------AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWS 241 (1212)
Q Consensus 174 ~~VitVPa~f~~~qr~~l~~Aa~~------------AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT 241 (1212)
-.+||.+... ++.++++++. ||++...++. |-|++.+.... . ....++++|+||||
T Consensus 90 ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E------ke~gVa~IDIGgGT 157 (475)
T PRK10719 90 AVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E------RNTRVLNIDIGGGT 157 (475)
T ss_pred EEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h------ccCceEEEEeCCCc
Confidence 4577777644 4445566665 6666555555 88888755532 1 23479999999999
Q ss_pred EEEEEEEE
Q psy18164 242 TTVSIVSY 249 (1212)
Q Consensus 242 ~Dvsvv~~ 249 (1212)
++++++.=
T Consensus 158 T~iaVf~~ 165 (475)
T PRK10719 158 ANYALFDA 165 (475)
T ss_pred eEEEEEEC
Confidence 99999763
No 97
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.34 E-value=0.028 Score=63.88 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=43.3
Q ss_pred EEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 632 VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 632 ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
|+|+||.+..-.|.+.+.+.+|.++..+.+|.-.-|.|||+.|..
T Consensus 346 iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999864
No 98
>PRK13317 pantothenate kinase; Provisional
Probab=97.32 E-value=0.019 Score=64.65 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=42.5
Q ss_pred CccEEEEEc-CCcCCHHHHHHHHHHh---CCcccCCCCchhHHHhhHHHHHH
Q psy18164 628 VISQVILVG-AGTRVPKVQEKITKVV---GVELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 628 ~i~~ViLvG-GssriP~Vq~~l~~~f---g~~i~~~~n~deaVA~GAa~~aa 675 (1212)
.+..|+++| |.++.|.+++.+.+++ +.++..+.|+..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 7999999999999988 46788889999999999999875
No 99
>PTZ00452 actin; Provisional
Probab=97.28 E-value=0.0044 Score=73.35 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
+.+..++.|+....- .....-..+++|-|...+..+|+.|.+.+ +..+++.+.+.+.|.+++++++.
T Consensus 80 d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------- 147 (375)
T PTZ00452 80 DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------- 147 (375)
T ss_pred HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-----------
Confidence 445556666543211 11222346899999999999999887777 66799999999999999987652
Q ss_pred eEEEEEecCCceEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv 247 (1212)
.+-||+|+|.|.++++-|
T Consensus 148 ~tglVVDiG~~~t~v~PV 165 (375)
T PTZ00452 148 TIGLVVDSGEGVTHCVPV 165 (375)
T ss_pred ceeeeecCCCCcceEEEE
Confidence 256999999999988544
No 100
>PTZ00281 actin; Provisional
Probab=97.26 E-value=0.0037 Score=74.08 Aligned_cols=81 Identities=9% Similarity=-0.007 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhcCC--ccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 227 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~--~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~ 227 (1212)
+.+..+++|+... .+.. .-..+++|-|..++..+|+.|.+.+ +..+++.+.++..|.+++++++.
T Consensus 81 d~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~--------- 148 (376)
T PTZ00281 81 DDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--------- 148 (376)
T ss_pred HHHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC---------
Confidence 4555566665432 2222 2246888999999999999988865 77799999999999999987652
Q ss_pred CCeEEEEEecCCceEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVS 245 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvs 245 (1212)
.+-||+|+|.+.+.++
T Consensus 149 --~tglVVDiG~~~t~v~ 164 (376)
T PTZ00281 149 --TTGIVMDSGDGVSHTV 164 (376)
T ss_pred --ceEEEEECCCceEEEE
Confidence 2569999999999875
No 101
>KOG0679|consensus
Probab=97.22 E-value=0.0045 Score=69.64 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
|+..+.++|..+..- .....---++||-|++=+...|+.+.+.+ +...++...|+.+|+++|++-+.
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr----------- 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR----------- 153 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC-----------
Confidence 566666666653211 11122235899999988888888766655 77788899999999999987653
Q ss_pred eEEEEEecCCceEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv 247 (1212)
.+.||+|+|++++.|+-|
T Consensus 154 stalVvDiGa~~~svsPV 171 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPV 171 (426)
T ss_pred CceEEEEecCCCceeeee
Confidence 267999999999987754
No 102
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.16 E-value=0.004 Score=67.34 Aligned_cols=189 Identities=19% Similarity=0.145 Sum_probs=95.9
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
+..|.++.-.=-|+.+|.+......- .+..+.++||||||||++++.- .+.+.-+.-+|
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG------t~~PlaIlDmG~GSTDAsii~~-------------~g~v~~iHlAG-- 164 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG------TDKPLAILDMGGGSTDASIINR-------------DGEVTAIHLAG-- 164 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT--------SSEEEEEE-SSEEEEEEE-T-------------TS-EEEEEEE---
T ss_pred HHHCCceEEccccHHHHHhcccCCCC------CCCCeEEEecCCCcccHHHhCC-------------CCcEEEEEecC--
Confidence 34588776666788888876533221 1577999999999999999973 23555555444
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeE---------EE-Eee--------
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHF---------AQ-IEG-------- 584 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~---------i~-ie~-------- 584 (1212)
.|+-++..|...| +. ++ +.-||.+|+---+.-+.. +. ++.
T Consensus 165 --AG~mVTmlI~sEL----------Gl----~d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~fa 222 (332)
T PF08841_consen 165 --AGNMVTMLINSEL----------GL----ED------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFA 222 (332)
T ss_dssp --SHHHHHHHHHHHC----------T-----S-------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTT
T ss_pred --CchhhHHHHHHhh----------CC----CC------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHee
Confidence 2555555443221 10 01 122555555311111100 00 000
Q ss_pred ---cccCcceEEEE----eHHHHHHHHHHHHHHH-HHHHHHHHHhc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-
Q psy18164 585 ---LIDEIDFKLLV----TRAEFEALNEDLFDRV-GYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVG- 653 (1212)
Q Consensus 585 ---l~~~~d~~~~i----tR~efe~l~~~l~~~i-~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg- 653 (1212)
+.. .+--+.| +-++...+=...-+++ ..-..++|+.- .-+..+|+.|+|||||+-=.-|-++|.+.+.
T Consensus 223 Rvvi~~-~~~lvPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~ 301 (332)
T PF08841_consen 223 RVVILK-EDGLVPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSH 301 (332)
T ss_dssp SEEEEC-TTEEEEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCT
T ss_pred EEEEec-CCceeecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhh
Confidence 000 0111222 2233322222221221 11223444432 2345689999999999998888888887763
Q ss_pred -------CcccCCCCchhHHHhhHHHHHH
Q psy18164 654 -------VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 654 -------~~i~~~~n~deaVA~GAa~~aa 675 (1212)
-++.-..-|..|||.|.++.-+
T Consensus 302 y~iVaGRgNIrG~eGPRNAVATGLvlsy~ 330 (332)
T PF08841_consen 302 YGIVAGRGNIRGVEGPRNAVATGLVLSYA 330 (332)
T ss_dssp TT-EEEE--GGGTSTTSTHHHHHHHHHHH
T ss_pred CcceeeccccccccCchHHHHHHHHHhhc
Confidence 2566677889999999987543
No 103
>PTZ00466 actin-like protein; Provisional
Probab=97.12 E-value=0.0057 Score=72.49 Aligned_cols=84 Identities=7% Similarity=-0.025 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
+.+..+++|+.+... ....-..+++|-|..++..+|+.+.+.+ +..|++.+.+...|.+|+++++.
T Consensus 87 d~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------- 153 (380)
T PTZ00466 87 NDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------- 153 (380)
T ss_pred HHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-----------
Confidence 455566666543211 1112346888999999999999987766 66799999999999999987652
Q ss_pred eEEEEEecCCceEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv 247 (1212)
.+-+|+|+|.+.+.|.-+
T Consensus 154 ~tglVVD~G~~~t~v~PV 171 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSI 171 (380)
T ss_pred ceEEEEeCCCCceEEEEE
Confidence 257999999999988543
No 104
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.06 E-value=0.0019 Score=74.62 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=31.2
Q ss_pred ceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 201 KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 201 ~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
..+.+++|+.||.+.+...-. +...+||+|+||+|+|+++++
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~------~~~~~lVVDIGG~T~Dv~~v~ 182 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD------EDESVLVVDIGGRTTDVAVVR 182 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-------TTSEEEEEEE-SS-EEEEEEE
T ss_pred eeEEEEcccHHHHHHHHHhhc------ccCcEEEEEcCCCeEEeeeec
Confidence 467889999999988765411 124799999999999999885
No 105
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=96.80 E-value=0.13 Score=61.55 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=53.8
Q ss_pred ceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc--------------
Q psy18164 590 DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE-------------- 655 (1212)
Q Consensus 590 d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~-------------- 655 (1212)
|+.+.|.-.++++.+-.---.+......+.+. ++.-+-|-++|+|--+|.|.||..++......
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~Ea--In~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~ 819 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEA--INHYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGT 819 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHH--HhhhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccc
Confidence 34456666666654322100122222222221 12345678999999999999999998876422
Q ss_pred ------ccCCCCchhHHHhhHHHHHHhhc
Q psy18164 656 ------LSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 656 ------i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
..+--||-..+|.||-+.+..+.
T Consensus 820 WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 820 WYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred eecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 12335788999999988887654
No 106
>KOG0797|consensus
Probab=96.72 E-value=0.011 Score=68.59 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=88.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHcCCccc-----eEEEecCCCCCHHHHHHHH-HHHHHcCCCeeeeechhHHHHHhhcc
Q psy18164 392 ELYHVEELVAMLLHKAREYASVSAGQVIN-----EAVIIVPGYFNQIERQSML-KAGELAGLKVLQLMNDYTAVALNYGI 465 (1212)
Q Consensus 392 ~~~~~eel~a~~L~~lk~~a~~~~~~~i~-----~~VItVP~~f~~~qR~al~-~Aa~~AGl~~~~li~EptAaAl~y~~ 465 (1212)
..+|..++++.+-+-+.-...+.+..+.+ .+|+-||-.|....-+.+. --....||+-..++-|..||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 46788888877655554444556665544 5899999999877755444 44566799999999999999876655
Q ss_pred cccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHH
Q psy18164 466 FKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK 539 (1212)
Q Consensus 466 ~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~ 539 (1212)
. .-.|||||+-.|.++.|+ .|.+-.+..+ -...||.||++.++-++.+
T Consensus 275 s-----------s~CVVdiGAQkTsIaCVE--------dGvs~~ntri-------~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S-----------SACVVDIGAQKTSIACVE--------DGVSLPNTRI-------ILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c-----------ceeEEEccCcceeEEEee--------cCccccCceE-------EeccCCchHHHHHHHHHHh
Confidence 3 358999999999999998 3533223333 2468999999998876655
No 107
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.58 E-value=0.37 Score=57.62 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=119.9
Q ss_pred HHHHHHHHHcCCCeee----eechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCC
Q psy18164 436 QSMLKAGELAGLKVLQ----LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 511 (1212)
Q Consensus 436 ~al~~Aa~~AGl~~~~----li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~ 511 (1212)
....++|...||..-. -+=+.-|.++.-+.- ..+-|++=+|-+|+.+.+-+-.. .-.|. -.+
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~---------~~~~l~~I~GTStC~m~~s~~~~---~v~Gv--wGp 297 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA---------QPGSLAMIAGTSTCHMLLSEKPR---FVPGV--WGP 297 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC---------CCCeEEEEeccceEEEEecCCce---ecCcc--ccc
Confidence 3456788888885321 112222222222111 12234444788888777665220 01121 122
Q ss_pred eEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcc-------cCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEee
Q psy18164 512 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMK-------KTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 584 (1212)
Q Consensus 512 ~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~-------~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~ 584 (1212)
....+.-++-..=||..-.=.|.+||.+....-. +.+.++. .....++..-+++.+...+-... ...++.
T Consensus 298 y~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~ 374 (544)
T COG1069 298 YDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDW 374 (544)
T ss_pred cccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEeccc
Confidence 3333333444556777777788888877642100 1011111 12344444455666665543322 122222
Q ss_pred ccc------CcceEEE-------EeHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHH
Q psy18164 585 LID------EIDFKLL-------VTRAEFEALNEDLFDRV---GYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI 648 (1212)
Q Consensus 585 l~~------~~d~~~~-------itR~efe~l~~~l~~~i---~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l 648 (1212)
++. |.+.+-. =+.+.+-.+..-.+.-+ ...|-+++++.|+. |+.|.+.||..+-|.+.+++
T Consensus 375 f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~ 451 (544)
T COG1069 375 FNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLY 451 (544)
T ss_pred ccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHH
Confidence 221 2222222 22332323333333222 24455666776654 88999999999999999999
Q ss_pred HHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 649 TKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 649 ~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|..+... ..++++++|+|+.||.-.+.
T Consensus 452 aDvtg~~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 452 ADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred HHhcCCeEEee-cccchhhhHHHHHHHHHhcc
Confidence 99999766555 67899999999999976654
No 108
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=95.95 E-value=0.011 Score=63.17 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=42.8
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
.++.|.++||.++.|.+.+++.++||.++...-+ .|+.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4889999999999999999999999987766555 89999999999974
No 109
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=95.80 E-value=0.11 Score=61.48 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=52.3
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCeeeee---chhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEe
Q psy18164 422 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLM---NDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 498 (1212)
Q Consensus 422 ~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li---~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 498 (1212)
++||==.--.++.|..+..-+..||==|+.-- -|..=|+-..|.... .......|+=+|+||||+.+++++-
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~---S~~~~~~V~NiDIGGGTtN~avf~~-- 162 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL---SKEHHTVVANIDIGGGTTNIAVFDN-- 162 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH---hhhhCCeEEEEEeCCCceeEEEEEC--
Confidence 56666666667777777777777764333221 122223221111110 1111578999999999999999983
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHH
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEM 529 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~ 529 (1212)
| ++++++. .++||+-|
T Consensus 163 ------G--------~v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 163 ------G--------EVIDTAC-LDIGGRLI 178 (473)
T ss_pred ------C--------EEEEEEE-EeeccEEE
Confidence 4 3455554 57999876
No 110
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.64 E-value=0.16 Score=59.76 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCe-EEEEEecCCceEEEEEEE
Q psy18164 184 NQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV-HVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~-~vlV~D~GggT~Dvsvv~ 248 (1212)
.....+.+.++++.||++...+..+|.|.+-.+..-........... .++++|+|+++++++++.
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~ 206 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH 206 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE
Confidence 34567789999999999999998899888765531000000111123 499999999999999984
No 111
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=95.01 E-value=0.13 Score=65.75 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=43.5
Q ss_pred ceeeHHHHHHHHHHHHHHHHHHhcC--------------CccccEEEccCCCCCHHHHHHHHHHHHHc
Q psy18164 145 ELYHVEELVAMLLHKAREYASVSAG--------------QVINEAVIIVPGYFNQIERQSMLKAGELA 198 (1212)
Q Consensus 145 ~~~s~~ev~~~~L~~l~~~a~~~~~--------------~~~~~~VitVPa~f~~~qr~~l~~Aa~~A 198 (1212)
..||-..+++++|..|+-+|-.+.+ +..+++++|+|....-.+|+.++++++.|
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~A 482 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEA 482 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHH
Confidence 4578889999999999988855433 23577999999999999988888877755
No 112
>PRK15027 xylulokinase; Provisional
Probab=94.88 E-value=0.058 Score=66.36 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=59.6
Q ss_pred EeHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHH
Q psy18164 595 VTRAEFEAL-NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 595 itR~efe~l-~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~ 673 (1212)
-+|.+|-.. ++-+.-.+...+ +.++..+. .++.|.++||+++.+...+++.+++|.++....+.+++.++|||+.
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 356666543 333333333444 33444443 4788999999999999999999999988866667777899999999
Q ss_pred HHhhcCCc
Q psy18164 674 AADLSTGF 681 (1212)
Q Consensus 674 aa~ls~~f 681 (1212)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 98765543
No 113
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=94.66 E-value=0.55 Score=54.45 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=40.4
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhC-----CcccCCCCchhHHHhhHHHHH
Q psy18164 630 SQVILVGAGTRVPKVQEKITKVVG-----VELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 630 ~~ViLvGGssriP~Vq~~l~~~fg-----~~i~~~~n~deaVA~GAa~~a 674 (1212)
..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999994 457778999999999999975
No 114
>PLN02669 xylulokinase
Probab=94.55 E-value=0.09 Score=65.58 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 604 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 604 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
+..+++.+.=-++..++..+.. ..++.|+++||+|+.+.+.+++.++||..+.+.- ..++.|+|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~-~~ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQ-RPDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecC-CCCchHHHHHHHHHH
Confidence 3334444333333333333322 3578999999999999999999999998765444 447889999999986
No 115
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=94.54 E-value=0.1 Score=65.07 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=62.2
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 595 VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 595 itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
-+|..+..++.-+++-+.--++.+++...-....++.|.++||+++.+...+++.+++|.++...-+ .|++++|||+.|
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 488 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAMLG 488 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHHH
Confidence 3576777777777776665555444433211124788999999999999999999999988866544 568899999999
Q ss_pred HhhcCC
Q psy18164 675 ADLSTG 680 (1212)
Q Consensus 675 a~ls~~ 680 (1212)
+.-.+.
T Consensus 489 ~~~~G~ 494 (541)
T TIGR01315 489 AKAAGT 494 (541)
T ss_pred HHhcCc
Confidence 865543
No 116
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.29 E-value=1.1 Score=53.21 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=50.7
Q ss_pred CcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHH-HHhCC-cccCCCCchhH
Q psy18164 588 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKIT-KVVGV-ELSKNLNTDEA 665 (1212)
Q Consensus 588 ~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~-~~fg~-~i~~~~n~dea 665 (1212)
+..-.+.||..+.+++.. --.-+..-++-.|++++++.+||+.|+|.||..+.=-+++.+. -.++. ...+-.-.-.+
T Consensus 288 ~~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~ 366 (412)
T PF14574_consen 288 DIGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNA 366 (412)
T ss_dssp SSSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-H
T ss_pred CCCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcH
Confidence 334467899999987532 2345666778889999999999999999999988777777764 22331 11121222335
Q ss_pred HHhhHHHHH
Q psy18164 666 AALGAVYKA 674 (1212)
Q Consensus 666 VA~GAa~~a 674 (1212)
+-.||.+..
T Consensus 367 al~GA~~~L 375 (412)
T PF14574_consen 367 ALAGARMAL 375 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566665544
No 117
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=93.94 E-value=0.59 Score=55.53 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=43.8
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcCCceEEEec---chhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 175 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLMN---DYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 175 ~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~---EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
++||==+--.+++|..+..-+..||==++.--- |..-|+-..+.... .......|+=+|+||||+.+++++-.
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~---S~~~~~~V~NiDIGGGTtN~avf~~G 163 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL---SKEHHTVVANIDIGGGTTNIAVFDNG 163 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH---hhhhCCeEEEEEeCCCceeEEEEECC
Confidence 566665666677777777777777653333221 44444332221111 11124589999999999999998643
No 118
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=93.92 E-value=0.61 Score=56.06 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=96.2
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcc-cceEEE-EecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRK-TPTLVA-FHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~-~PS~V~-~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
|-||.||-.++++++.+..|.-+.++..+.+. ..++.. -..+...+|+++...... +..
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~------------------ 69 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLL------------------ 69 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-ccc------------------
Confidence 89999999999999988766666655555543 333332 124455666665432110 000
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcC--CccccEEEccCCCCCHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~--~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
.+.....+ |. +.-=+....+.+++...- .++. ..-..+++|-|..+...+|..+.+.
T Consensus 70 ----------~~~~p~~~---------g~-i~~W~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 70 ----------ELRYPIEN---------GI-ILNWDAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred ----------eeeccccc---------Cc-cCCcHHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 00000011 11 111134555666555442 1111 1123599999999999998876665
Q ss_pred H-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEE
Q psy18164 195 G-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 195 a-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv 247 (1212)
+ +...+..+.+...+.+++++.+... .+.+|+|+|.+.++|+=|
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g~~~---------~~g~ViD~G~~~t~v~PV 173 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASGSSD---------ETGLVIDSGDSVTHVIPV 173 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcCCCC---------CceEEEEcCCCceeeEee
Confidence 5 6667777778888887777665422 267999999999988644
No 119
>PRK00047 glpK glycerol kinase; Provisional
Probab=93.56 E-value=0.17 Score=62.64 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=44.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||++|.|...+++.++||.++... +..|+.++|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHHHHhhhcCc
Confidence 37889999999999999999999999887544 45578999999999865554
No 120
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=93.52 E-value=0.18 Score=61.97 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=45.3
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.+.+.+++.++||.++.... ..|+.++|||+.|+.-.+.|
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999998776544 66789999999998766543
No 121
>PF13941 MutL: MutL protein
Probab=93.46 E-value=0.26 Score=58.89 Aligned_cols=43 Identities=33% Similarity=0.543 Sum_probs=31.0
Q ss_pred EEEEEcCCcceEEEEEE--CCCceEEecCCCCCcccceEEEEecCceeEccc
Q psy18164 38 VMSVDLGSEWMKVAIVS--PGVPMEIALNKESKRKTPTLVAFHKGERTFGED 87 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~--~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~ 87 (1212)
++.+|||+|||.+..++ .+. .+++ |....||.| -. +.+.+|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~-~~~i----g~a~apTTv-~~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGE-PRLI----GQAEAPTTV-EP-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCc-cEEE----EEEeCCCCc-Cc-ccHHHHHH
Confidence 68999999999999998 553 4566 566678877 22 45555543
No 122
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=93.45 E-value=0.15 Score=62.84 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=44.4
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||++|.+...+++.++||.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHHHHHHhhcCc
Confidence 4788999999999999999999999988865 445678899999999865543
No 123
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=93.22 E-value=0.18 Score=57.39 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHH
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~ 673 (1212)
+++-..+++.+.|+++....+..+.+. .++.+||++ |++-..|.+.+| ..+..+..+.-+-|.||++-
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 333444555555555544446554442 355566665 777788888888 55666666788889998753
No 124
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=93.05 E-value=0.22 Score=62.13 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=55.9
Q ss_pred EeHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 595 VTRAEFEALNE-DLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 595 itR~efe~l~~-~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGs-sriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
-+|.+|-..+- -+.-.+... -+.|+..+. .++.|.++||+ ++.+...+++.++||.++...-++ |+.|+|||+
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~-l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMI-METFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 35655443322 222233333 333444443 47899999999 999999999999999888666554 688999999
Q ss_pred HHHhhcCC
Q psy18164 673 KAADLSTG 680 (1212)
Q Consensus 673 ~aa~ls~~ 680 (1212)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876554
No 125
>PRK04123 ribulokinase; Provisional
Probab=92.95 E-value=0.2 Score=62.64 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=43.7
Q ss_pred CccEEEEEcCC-cCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAG-TRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGs-sriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||+ +|.+...+++.++||.++...- ..|+.++|||+.|+.-.+.
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~G~ 490 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAAGA 490 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHhcc
Confidence 47889999999 9999999999999998775444 4578899999999865443
No 126
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=92.88 E-value=0.23 Score=60.85 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=44.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||+++.|...+++.++||.++...-+ .|+.++|||+.|+.-.+.
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~a~~a~G~ 444 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMFGFYGVGE 444 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHHHHHhcCc
Confidence 4788999999999999999999999988765544 478899999999866543
No 127
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=92.88 E-value=0.24 Score=61.25 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=43.8
Q ss_pred ccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 629 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 629 i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
++.|.++||+++.+...+++.++||.++...- ..|+.++|||+.|+.-.+.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 78899999999999999999999998876544 5568899999999865554
No 128
>PRK10331 L-fuculokinase; Provisional
Probab=92.54 E-value=0.26 Score=60.38 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=44.7
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.|...+++.+++|.++...- ..|++++|||+.|+.-.+.|
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~~~G~~ 441 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWYGVGEF 441 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999998875544 45788999999998755543
No 129
>PLN02295 glycerol kinase
Probab=92.40 E-value=0.29 Score=60.72 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=44.6
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 627 DVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 627 ~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
..++.|.++||+++.|...+++.++||.++... +..|+.|+|||+.|+.-.+.
T Consensus 411 ~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 411 KGLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CCcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCc
Confidence 357889999999999999999999999888543 45578999999999866554
No 130
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=92.28 E-value=0.31 Score=59.53 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=44.2
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.+...+++.+++|.++... . .|+.|+|||+.|+.-.+.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHHHHHHhcCCc
Confidence 47889999999999999999999999888543 3 6799999999998765543
No 131
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=92.06 E-value=0.44 Score=59.04 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=55.5
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.+|-. +++-+.-.+...++...+..+. .++.|.++||+++.+...+++.++||.++...-++ |+.++|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHH
Confidence 4444433 2233333334444443333342 47899999999999999999999999888655544 68899999999
Q ss_pred HhhcCC
Q psy18164 675 ADLSTG 680 (1212)
Q Consensus 675 a~ls~~ 680 (1212)
+.-.+.
T Consensus 447 ~~~~G~ 452 (505)
T TIGR01314 447 LKALGL 452 (505)
T ss_pred HHhcCc
Confidence 876554
No 132
>KOG2517|consensus
Probab=91.97 E-value=0.47 Score=57.12 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
+++-+--++...|+..-++.+ ..|+.+.+.||.|+-|.+.+.+.+.+|.++.++.+.|- |+.|||+.|+..++.+
T Consensus 392 ~leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 392 ALEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCc
Confidence 344444555555555544443 46778999999999999999999999999999999987 9999999999888763
No 133
>KOG2531|consensus
Probab=91.92 E-value=0.43 Score=55.38 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=46.5
Q ss_pred cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 622 SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 622 a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
.+.....-..|+++||+||--.|-+.|.++||..+..- +..+++++|+||.|+.
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 436 LGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 35666678899999999999999999999999766544 8889999999999874
No 134
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=91.69 E-value=0.36 Score=47.27 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=26.5
Q ss_pred EEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCC--hHHHH--HHHHHHH
Q psy18164 479 VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLG--GLEMQ--IRLRDFL 537 (1212)
Q Consensus 479 vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lG--G~~~D--~~l~~~l 537 (1212)
|+++|+|++++.+.+++.. ....+++++.+.....| |..+. ..+.+-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~-----------~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG-----------SDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT-----------EEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeC-----------CCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 6899999999999999852 12356777665433333 55555 4444443
No 135
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=91.59 E-value=0.65 Score=51.53 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=37.9
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhC-Cc----ccCCCCchhHHHhhHHHHH
Q psy18164 631 QVILVGAGTRVPKVQEKITKVVG-VE----LSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 631 ~ViLvGGssriP~Vq~~l~~~fg-~~----i~~~~n~deaVA~GAa~~a 674 (1212)
.|+|.||.++.+.+.+.|++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999995 23 4556788999999999875
No 136
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=91.40 E-value=0.44 Score=58.37 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=44.0
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.+...+++.+++|.++.... .|+.++|||+.|+.-.+.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCCc
Confidence 478899999999999999999999998885543 3799999999998766543
No 137
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=90.96 E-value=2 Score=48.40 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=39.5
Q ss_pred CCccEEEEEcC-CcCCHHHHHHHHHHhC---CcccCCCCchhHHHhhHHH
Q psy18164 627 DVISQVILVGA-GTRVPKVQEKITKVVG---VELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 627 ~~i~~ViLvGG-ssriP~Vq~~l~~~fg---~~i~~~~n~deaVA~GAa~ 672 (1212)
..+..|+++|| .+..|.+++.+..++. .+....-|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 6779999999998875 5677788999999999986
No 138
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=90.83 E-value=0.52 Score=58.58 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=44.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||++|.+...+++.+++|.++...-++ |+.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhCC
Confidence 47889999999999999999999999888655544 68899999999865543
No 139
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=90.83 E-value=1.3 Score=53.40 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=39.0
Q ss_pred ceeeHHHHHHHHHHHHHHHHHHhcC--------------CccccEEEccCCCCCHHHHHHHHHHHHH
Q psy18164 145 ELYHVEELVAMLLHKAREYASVSAG--------------QVINEAVIIVPGYFNQIERQSMLKAGEL 197 (1212)
Q Consensus 145 ~~~s~~ev~~~~L~~l~~~a~~~~~--------------~~~~~~VitVPa~f~~~qr~~l~~Aa~~ 197 (1212)
..++-..+++++|..|+.+|-.+.+ +..+.+++|+|....-..|+.+++-+..
T Consensus 422 p~ySRSslmTfML~EilaqAl~qiNsp~tR~kl~~~~aPR~LRsiILTlPsAmPk~EreIfr~r~~e 488 (1014)
T COG4457 422 PCYSRSSLMTFMLSEILAQALSQINSPATRLKLRHKDAPRQLRSIILTLPSAMPKQEREIFRQRMEE 488 (1014)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhcCHHHhhhhccCCchHhhhhheeeCCccCCchHHHHHHHHHHH
Confidence 3577788999999999888865443 2235689999999987777766655543
No 140
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.52 E-value=3.4 Score=52.23 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
...+..+..+++-|.|-.+......... . . +++++||||.|||++++.
T Consensus 249 ~a~~~pv~tI~SGPAagvvGAa~ltg~~---~-g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 249 EAREKPVETILSGPAAGVVGAAYLTGLK---A-G-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred HHhcCCeeeEeeccHHHHHHHHHhcccc---c-C-CEEEEEcCCcceeeeeee
Confidence 3345566667788877766654431211 1 2 699999999999999997
No 141
>KOG0677|consensus
Probab=90.25 E-value=6.5 Score=42.53 Aligned_cols=194 Identities=18% Similarity=0.196 Sum_probs=112.0
Q ss_pred ceEEEecCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEe
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKA-GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 498 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 498 (1212)
..+.+|=|+-=...-|+.|.+. .+.-||.-+.+. -.|+.--|+..- -.=+|+|-|-|-|-+.=+-
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyva--iQAVLtLYAQGL---------~tGvVvDSGDGVTHi~PVy--- 167 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVA--IQAVLTLYAQGL---------LTGVVVDSGDGVTHIVPVY--- 167 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEeh--HHHHHHHHHhcc---------cceEEEecCCCeeEEeeee---
Confidence 3678999988777777776654 456688765443 233333354322 2238999999987765442
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCC---
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN--- 575 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n--- 575 (1212)
.| +..-.-.....+.|+++++-|.+.+..+=-.- ....|. ......|+.|.--
T Consensus 168 -----e~-------~~l~HLtrRldvAGRdiTryLi~LLl~rGYaf-N~tADF-----------ETVR~iKEKLCYisYd 223 (389)
T KOG0677|consen 168 -----EG-------FVLPHLTRRLDVAGRDITRYLIKLLLRRGYAF-NHTADF-----------ETVREIKEKLCYISYD 223 (389)
T ss_pred -----cc-------eehhhhhhhccccchhHHHHHHHHHHhhcccc-ccccch-----------HHHHHHHhhheeEeec
Confidence 12 11111223456889999999999888762110 011121 1233344444311
Q ss_pred --------ceeEEEEee--cccCcceEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhcCCCC--CCccEEEEE
Q psy18164 576 --------NEHFAQIEG--LIDEIDFKLLVTRAEFE---ALNEDLF-----DRVGYPVEQALKSSAVPM--DVISQVILV 635 (1212)
Q Consensus 576 --------~~~~i~ie~--l~~~~d~~~~itR~efe---~l~~~l~-----~~i~~~i~~~L~~a~~~~--~~i~~ViLv 635 (1212)
-++++-+++ |-|+. .+++--+.|| .|++|.+ ..+.+++-++++.+.++. +--.+|+|.
T Consensus 224 ~e~e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLS 301 (389)
T KOG0677|consen 224 LELEQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLS 301 (389)
T ss_pred hhhhhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeec
Confidence 122333333 23332 3456666675 4666643 245566777777665432 224689999
Q ss_pred cCCcCCHHHHHHHHHHhC
Q psy18164 636 GAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 636 GGssriP~Vq~~l~~~fg 653 (1212)
||+|.-|.+-..|++.+.
T Consensus 302 GGstMYPGLPSRLEkElk 319 (389)
T KOG0677|consen 302 GGSTMYPGLPSRLEKELK 319 (389)
T ss_pred CCcccCCCCcHHHHHHHH
Confidence 999999999888876653
No 142
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=89.91 E-value=0.61 Score=49.50 Aligned_cols=30 Identities=30% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCceEEEecchhHHHHH
Q psy18164 186 IERQSMLKAGELAGLKVLQLMNDYTAVALN 215 (1212)
Q Consensus 186 ~qr~~l~~Aa~~AGl~~~~li~EP~AAal~ 215 (1212)
...+.+.++++.||+++..++-+|-|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457789999999999999999999998753
No 143
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.47 E-value=2.5 Score=51.55 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccE--EEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHH-HhhhhcccCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEA--VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL-NYGIFKRKDFNET 227 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~--VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal-~y~~~~~~~~~~~ 227 (1212)
+.+...+..|+..++...+..+.++ |=|-=..--.+.-.++.++-+..|++. .+|+.-+=|=+ +++..+....
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~--- 127 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPR--- 127 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhcCCC---
Confidence 4556666666666655545455442 222222222334557888999999976 67765544444 3444433321
Q ss_pred CCeEEEEEecCCceEEEEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
....+|+|+|||++.+++..
T Consensus 128 -~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 128 -KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred -CCCEEEEEecCCeEEEEEec
Confidence 34789999999999999887
No 144
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=89.28 E-value=3.7 Score=46.00 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=18.3
Q ss_pred CeEEEEEEcCCCceeEEEEE
Q psy18164 476 PVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~ 495 (1212)
...|+=+|+||||+..|++.
T Consensus 144 ~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred ceEEEEEeccCCccceeeec
Confidence 57899999999999999987
No 145
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=88.84 E-value=1.5 Score=54.29 Aligned_cols=51 Identities=29% Similarity=0.338 Sum_probs=38.2
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 627 DVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 627 ~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
..++.|.++||++|.+...+++.+++|.++..... .|+.+.|+|+.++.-.
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAALAAAAL 450 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHHHHHHHh
Confidence 34678999999999999999999999988875444 4555555555555443
No 146
>PRK10854 exopolyphosphatase; Provisional
Probab=88.74 E-value=4.8 Score=49.89 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCceEEEecchhHHHHHh-hhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 185 QIERQSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y-~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+...++.++-...|+++ ++|+..+=|-+.| +...... . .+..+|+|+|||++.+++++
T Consensus 96 ~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~--~--~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 96 LNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP--E--KGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred cCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC--C--CCCeEEEEeCCCeEEEEEec
Confidence 344556667777789975 7888777776666 3333221 1 24689999999999999875
No 147
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.50 E-value=5.4 Score=45.10 Aligned_cols=62 Identities=26% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 187 ERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
......+|.+.|||...-+==|.-|.--+|..--..-........|+|+|+|+..+.++++.
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~ 211 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQ 211 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEE
Confidence 34567899999999865443355555444442111111111223479999999999888875
No 148
>KOG0797|consensus
Probab=88.40 E-value=3.2 Score=49.12 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=63.8
Q ss_pred eeeHHHHHHHHHHHHHHHHHHhcCCcc-----ccEEEccCCCCCHHHHH-HHHHHHHHcCCceEEEecchhHHHHHhhhh
Q psy18164 146 LYHVEELVAMLLHKAREYASVSAGQVI-----NEAVIIVPGYFNQIERQ-SMLKAGELAGLKVLQLMNDYTAVALNYGIF 219 (1212)
Q Consensus 146 ~~s~~ev~~~~L~~l~~~a~~~~~~~~-----~~~VitVPa~f~~~qr~-~l~~Aa~~AGl~~~~li~EP~AAal~y~~~ 219 (1212)
-.|..++++.+-.-+.-.....+..++ -.+|+-||-.|.....+ .+.--....||..+.++.|..||.++.|+.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 345555555433322222233444333 25899999999876644 555566888999999999999999876653
Q ss_pred cccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 220 KRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 220 ~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.-.|||+|+-++.++.|+
T Consensus 276 -----------s~CVVdiGAQkTsIaCVE 293 (618)
T KOG0797|consen 276 -----------SACVVDIGAQKTSIACVE 293 (618)
T ss_pred -----------ceeEEEccCcceeEEEee
Confidence 358999999999998875
No 149
>KOG0680|consensus
Probab=88.19 E-value=45 Score=37.74 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=55.5
Q ss_pred cceEEEecCCCCCHHHHH-HHHHHHHHcCCCeeeeechhHHHHHhhc---ccccccCCCCCCeEEEEEEcCCCceeEE-E
Q psy18164 419 INEAVIIVPGYFNQIERQ-SMLKAGELAGLKVLQLMNDYTAVALNYG---IFKRKDFNETNPVHVMFYDMGAWSTTVS-I 493 (1212)
Q Consensus 419 i~~~VItVP~~f~~~qR~-al~~Aa~~AGl~~~~li~EptAaAl~y~---~~~~~~~~~~~~~~vlv~D~Gggt~dvs-v 493 (1212)
-..+|+|=|.+--++-.. ...--.+.-++. .+..-+.|+.+++- ..+..... ++....+|+|.|.+-|.+. +
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd--~v~kttaa~lva~~~~~~~ne~~tt-~~~~c~lVIDsGysfThIip~ 169 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFD--AVLKTTAAVLVAFTKYVRNNEDSTT-TSSECCLVIDSGYSFTHIIPV 169 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccc--eEeecCHHHhcchhhhccCCccccc-cccceEEEEeCCCceEEEehh
Confidence 346899988875544333 333333444554 34444445444443 22222112 2356899999999866543 3
Q ss_pred EEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHH
Q psy18164 494 VSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLG 538 (1212)
Q Consensus 494 v~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~ 538 (1212)
+. |....+... ...+||..++..|-+++.
T Consensus 170 v~---------g~~~~qaV~-------RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 VK---------GIPYYQAVK-------RIDVGGKALTNLLKETIS 198 (400)
T ss_pred hc---------CcchhhceE-------EeecchHHHHHHHHHHhh
Confidence 33 211111111 346999999999988775
No 150
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=88.03 E-value=2.4 Score=45.01 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHH
Q psy18164 433 IERQSMLKAGELAGLKVLQLMNDYTAVAL 461 (1212)
Q Consensus 433 ~qR~al~~Aa~~AGl~~~~li~EptAaAl 461 (1212)
...+.+..+++.|||++..++-+|-|++.
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 45778889999999999999999999874
No 151
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=87.81 E-value=1.4 Score=47.60 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEE
Q psy18164 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYD 483 (1212)
Q Consensus 404 L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D 483 (1212)
+.+|.+..+...+.++ .|+++-..|... .++.+--. .||| +|....+.-.... +...+++|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~-------------vAAa-NW~Ata~~~~e~~-~dsci~VD 136 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPRE-------------VAAA-NWVATARFLAEEI-KDSCILVD 136 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHH-------------HHHh-hhHHHHHHHHHhc-CCceEEEe
Confidence 3455666666676665 788998888764 22221111 1121 2211111100111 56799999
Q ss_pred cCCCceeEEEEE
Q psy18164 484 MGAWSTTVSIVS 495 (1212)
Q Consensus 484 ~Gggt~dvsvv~ 495 (1212)
||+.|+|+-=+.
T Consensus 137 ~GSTTtDIIPi~ 148 (330)
T COG1548 137 MGSTTTDIIPIK 148 (330)
T ss_pred cCCcccceEeec
Confidence 999999976554
No 152
>PF13941 MutL: MutL protein
Probab=87.47 E-value=2.3 Score=51.11 Aligned_cols=43 Identities=33% Similarity=0.558 Sum_probs=29.7
Q ss_pred EEEEecCceeEEEEEEe--CCCCeEEecCCCCCccceEEEEEecCcEeecHH
Q psy18164 285 VMSVDLGSEWMKVAIVS--PGVPMEIALNKESKRKTPTLVAFHKGERTFGED 334 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~--~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~ 334 (1212)
++.+||||||+++..+. .+ ..+++ +.-..||.| - .+....|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~-~~~~i----g~a~apTTv-~-~~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDG-EPRLI----GQAEAPTTV-E-PGDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCC-ccEEE----EEEeCCCCc-C-cccHHHHHH
Confidence 68899999999999998 55 34454 344567777 2 245555544
No 153
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=87.01 E-value=0.47 Score=46.47 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcC---CceEE---------Eecch-hHHHHH
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAG---LKVLQ---------LMNDY-TAVALN 215 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AG---l~~~~---------li~EP-~AAal~ 215 (1212)
+-++.-|+...+.|+...+.++..+++++ .....+.+.++++.++ ++... ++..| -|+|++
T Consensus 46 ~~i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 46 EDISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 34455666666777777777777888877 3344455677777766 66666 67788 777764
No 154
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=84.80 E-value=14 Score=42.65 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=39.3
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCC--c-ccCCCCc----hhHHHhhHHHHHHhhcCC
Q psy18164 627 DVISQVILVGAGTRVPKVQEKITKVVGV--E-LSKNLNT----DEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 627 ~~i~~ViLvGGssriP~Vq~~l~~~fg~--~-i~~~~n~----deaVA~GAa~~aa~ls~~ 680 (1212)
.+.+.|+|.|-.+|+|-+.+.+.+.|+. . ....+.+ -..+|.|||+.|.-+.++
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhcc
Confidence 4678899999999999998888877752 1 1111222 244899999999888765
No 155
>KOG0676|consensus
Probab=84.33 E-value=3.8 Score=47.86 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcC--CccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCe
Q psy18164 154 AMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV 230 (1212)
Q Consensus 154 ~~~L~~l~~~a~~~~~--~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~ 230 (1212)
..+.+|+.. +.+. .....+++|-|..+...-|+.|.+.. +..+.+-+.+ ...|.+ |.....
T Consensus 82 e~iw~~if~---~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv---a~qavl-ya~g~t--------- 145 (372)
T KOG0676|consen 82 EKIWHHLFY---SELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV---AIQAVL-YASGRT--------- 145 (372)
T ss_pred HHHHHHHHH---HhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH---HHHHHH-HHcCCe---------
Confidence 556666651 2221 12246999999999999999888766 3334443322 223333 544332
Q ss_pred EEEEEecCCceEEE
Q psy18164 231 HVMFYDMGAWSTTV 244 (1212)
Q Consensus 231 ~vlV~D~GggT~Dv 244 (1212)
+=+|+|+|.|-+++
T Consensus 146 tG~VvD~G~gvt~~ 159 (372)
T KOG0676|consen 146 TGLVVDSGDGVTHV 159 (372)
T ss_pred eEEEEEcCCCceee
Confidence 45999999996643
No 156
>KOG0681|consensus
Probab=84.22 E-value=13 Score=44.60 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=69.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccC
Q psy18164 393 LYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDF 471 (1212)
Q Consensus 393 ~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~ 471 (1212)
.++--++...+|.|+-...--....-..-+++|=+..=...+|+.|.+-. +.-|+.-+.+=-+.- |..+++..
T Consensus 90 VvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl-----fS~~hN~~- 163 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL-----FSFYHNYG- 163 (645)
T ss_pred ccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH-----HHHhhccC-
Confidence 34445666777777666432221121234777777666667787776654 444876554321111 11111111
Q ss_pred CCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHH
Q psy18164 472 NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 540 (1212)
Q Consensus 472 ~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 540 (1212)
......-||+++|..+|.|-.|- .| .. ++..+...++||...-.-|.+.|..+
T Consensus 164 -~~~~~~~liis~g~~~T~vipvl--------dG------~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 164 -KSSNKSGLIISMGHSATHVIPVL--------DG------RL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred -cccCcceEEEecCCCcceeEEEe--------cC------ch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 11134689999999999876553 24 22 34445567899998765555555444
No 157
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=84.22 E-value=50 Score=37.99 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--cCCccceEEEecCCCCCHHH------------HHHHHHHH-HHcCCCeeeeechhHHHH
Q psy18164 396 VEELVAMLLHKAREYASVS--AGQVINEAVIIVPGYFNQIE------------RQSMLKAG-ELAGLKVLQLMNDYTAVA 460 (1212)
Q Consensus 396 ~eel~a~~L~~lk~~a~~~--~~~~i~~~VItVP~~f~~~q------------R~al~~Aa-~~AGl~~~~li~EptAaA 460 (1212)
+++++..+...+.+..+.. ...++..+.|++|...+... .-.+.+.. +..|+++ .+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv-~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPV-VVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCE-EEechHHHHH
Confidence 4555555555555544432 12356778888888664321 11233333 2347764 7999999999
Q ss_pred HhhcccccccCCCCCCeEEEEEEcCCCceeEEEE
Q psy18164 461 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 494 (1212)
Q Consensus 461 l~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 494 (1212)
++-....... . .++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~---~-~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGK---G-ARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccC---C-CCcEEEEEeCCcc-EEEEE
Confidence 8754433211 1 4678999999875 55555
No 158
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=84.05 E-value=1.4 Score=48.42 Aligned_cols=47 Identities=23% Similarity=0.103 Sum_probs=34.1
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
+..|.++.--=-|+.+|.+........ ..-+.++||||||+|.|++.
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPGt------~~PlaIlDmG~GSTDAsii~ 152 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPGT------DKPLAILDMGGGSTDASIIN 152 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT--------SSEEEEEE-SSEEEEEEE-
T ss_pred HHHCCceEEccccHHHHHhcccCCCCC------CCCeEEEecCCCcccHHHhC
Confidence 455888766677999999877654433 23589999999999999985
No 159
>PTZ00297 pantothenate kinase; Provisional
Probab=82.40 E-value=1.1e+02 Score=42.68 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=35.2
Q ss_pred CCCccEEEEEcCC-cCCHHHHHHHHHHhC------CcccCCCCchhHHHhhHHHHH
Q psy18164 626 MDVISQVILVGAG-TRVPKVQEKITKVVG------VELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 626 ~~~i~~ViLvGGs-sriP~Vq~~l~~~fg------~~i~~~~n~deaVA~GAa~~a 674 (1212)
..+|+.|+++|+. ..-|..++.|..++. .+...--+....-|+||++..
T Consensus 1389 ~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1389 VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 3468899999995 458999999886652 344444566678889987654
No 160
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=80.31 E-value=26 Score=39.60 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=36.8
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcCCceEEEe---cchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 175 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLM---NDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 175 ~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li---~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
++||=-..=..+.|..+..--..||==++.-- -|..-|.-..+. ..+.+.....|+=+|+||||+..|++.
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA---~t~Seqr~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGA---QTLSEQRLTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccc---cchhhhhceEEEEEeccCCccceeeec
Confidence 45554444455566655544444543222211 133322221111 112223345799999999999999864
No 161
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=79.51 E-value=7.3 Score=44.71 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 435 RQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 435 R~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
+..+.+.. +..|+++ ++|+...=|.+.|.--.. .+.. ...+++|+|||||.++++.
T Consensus 87 ~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~-~~~~---~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 87 GPEFLREAEAILGLPI-EVISGEEEARLIYLGVAH-TLPI---ADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHh-CCCC---CCcEEEEecCCeEEEEEec
Confidence 33444444 4579987 788888888777732221 1211 2249999999999999875
No 162
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=79.42 E-value=16 Score=39.80 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCccccEEEccCCCCCHH-HHHHHHH-HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEE
Q psy18164 157 LHKAREYASVSAGQVINEAVIIVPGYFNQI-ERQSMLK-AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMF 234 (1212)
Q Consensus 157 L~~l~~~a~~~~~~~~~~~VitVPa~f~~~-qr~~l~~-Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV 234 (1212)
+..|++.++...+.++ .|+++-..|... ..+..++ ||.. . .|.|- +..+ ..++..++
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAAaN--W---------~Ata~-~~~e-------~~~dsci~ 134 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAAAN--W---------VATAR-FLAE-------EIKDSCIL 134 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHHhh--h---------HHHHH-HHHH-------hcCCceEE
Confidence 4566777777777665 788888888653 2221222 2211 1 11111 1111 12347999
Q ss_pred EecCCceEEEEEE
Q psy18164 235 YDMGAWSTTVSIV 247 (1212)
Q Consensus 235 ~D~GggT~Dvsvv 247 (1212)
+|||..|+|+--+
T Consensus 135 VD~GSTTtDIIPi 147 (330)
T COG1548 135 VDMGSTTTDIIPI 147 (330)
T ss_pred EecCCcccceEee
Confidence 9999999997544
No 163
>KOG0681|consensus
Probab=79.11 E-value=2.6 Score=50.22 Aligned_cols=72 Identities=24% Similarity=0.373 Sum_probs=51.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh------C--CcccCCCCchhHHH
Q psy18164 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV------G--VELSKNLNTDEAAA 667 (1212)
Q Consensus 596 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f------g--~~i~~~~n~deaVA 667 (1212)
+..=+.+++..++.+...-..+.| +..|+|+||.+.+|.+.+.|.+-+ | ..+....||-..+=
T Consensus 535 dQaGl~Ei~~~il~r~p~~eq~~l---------V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW 605 (645)
T KOG0681|consen 535 DQAGLAEIMDTILRRYPHDEQEKL---------VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAW 605 (645)
T ss_pred hhhhHHHHHHHHHHhCchhhhHhh---------hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhh
Confidence 344444444444444443333333 788999999999999999998776 3 25566788988999
Q ss_pred hhHHHHHHh
Q psy18164 668 LGAVYKAAD 676 (1212)
Q Consensus 668 ~GAa~~aa~ 676 (1212)
+||+.+|+.
T Consensus 606 ~GA~~~a~n 614 (645)
T KOG0681|consen 606 RGASAWAAN 614 (645)
T ss_pred hhhHHhhcC
Confidence 999999986
No 164
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=77.91 E-value=7.6 Score=44.19 Aligned_cols=53 Identities=13% Similarity=0.349 Sum_probs=35.1
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHhh-cccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 438 MLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 438 l~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
+.+.-+..|+++ .+|+...=|.+.| |.... + .. ....+++|+|||||.+++++
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~--l-~~-~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSS--L-PP-DKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHH--S-TT-TSSEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhh--c-cc-cCCEEEEEECCCceEEEEEE
Confidence 444445569987 7777776666665 33222 2 12 56789999999999999986
No 165
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=77.50 E-value=5.4 Score=45.40 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCceEEEecchhHHHHHhh-hhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 189 QSMLKAGELAGLKVLQLMNDYTAVALNYG-IFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 189 ~~l~~Aa~~AGl~~~~li~EP~AAal~y~-~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
..+.+.-...|++. .+|+..+=|.+.|. ..... ......+|+|+|||++.+++++
T Consensus 75 ~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l----~~~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 75 EFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSL----PPDKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHS----TTTSSEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhc----cccCCEEEEEECCCceEEEEEE
Confidence 34666666779975 68887766666553 22221 1234789999999999988874
No 166
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=77.18 E-value=9.8 Score=46.93 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCceEEEecchhHHHHHh-hhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 185 QIERQSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y-~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+...++.++-+..|+++ ++|+..+=|-+.| +..... .. ....+|+|+|||++.+++++
T Consensus 91 ~N~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l--~~--~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 91 VNADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTT--GG--ADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred cCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhcc--CC--CCCEEEEEecCCeeeEEEec
Confidence 344566777778889975 7888777777666 333322 21 23589999999999999875
No 167
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=76.23 E-value=2 Score=48.93 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=27.2
Q ss_pred CceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecc
Q psy18164 200 LKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKT 254 (1212)
Q Consensus 200 l~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~ 254 (1212)
.+...+..-|.|.+..... .... ..+++++||||.|||++++. .|..
T Consensus 53 ~Pv~ti~SGPaas~~ga~~-~~~g-----~~~~i~vDmGGTTtDi~~i~--~G~p 99 (290)
T PF01968_consen 53 RPVETILSGPAASVIGAAA-RLTG-----LENAIVVDMGGTTTDIALIK--DGRP 99 (290)
T ss_dssp SGGCTB--SSHHHHHHHHH---HT------SSEEEEEE-SS-EEEEEEE--TTEE
T ss_pred hHHHHhhcCHHHhHhhhhh-hcCC-----CCCEEEEeCCCCEEEEEEEE--CCee
Confidence 3444566677777665444 1111 23799999999999999985 4443
No 168
>PLN02666 5-oxoprolinase
Probab=75.40 E-value=43 Score=45.83 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=51.6
Q ss_pred EeHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHH
Q psy18164 595 VTRAEFEALNEDL-FDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 595 itR~efe~l~~~l-~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~ 672 (1212)
++-++..+-+..+ -..+..+|+.+....|.++.+. .++..||+ =|..--.|.+.+| ..+..+.++.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 4445554444443 3455667777777778777653 35555555 4777788999999 5577888999899999975
Q ss_pred HH
Q psy18164 673 KA 674 (1212)
Q Consensus 673 ~a 674 (1212)
.-
T Consensus 531 ad 532 (1275)
T PLN02666 531 AD 532 (1275)
T ss_pred hh
Confidence 43
No 169
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=74.72 E-value=12 Score=42.85 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEE
Q psy18164 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMF 234 (1212)
Q Consensus 155 ~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV 234 (1212)
..|...++.+..+ +..--.+|-|--..--.++...+.+.-...|++. ++|+...=|.+.|.--.. .+.. ...++
T Consensus 56 ~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~-~~~~---~~~~v 129 (300)
T TIGR03706 56 EALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAH-TLPI---ADGLV 129 (300)
T ss_pred HHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHh-CCCC---CCcEE
Confidence 3444444444432 2221234444333333344445555556779975 799988888776642221 1111 12499
Q ss_pred EecCCceEEEEEEE
Q psy18164 235 YDMGAWSTTVSIVS 248 (1212)
Q Consensus 235 ~D~GggT~Dvsvv~ 248 (1212)
+|+|||++.++++.
T Consensus 130 ~DiGGGSte~~~~~ 143 (300)
T TIGR03706 130 VDIGGGSTELILGK 143 (300)
T ss_pred EEecCCeEEEEEec
Confidence 99999999999865
No 170
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=73.49 E-value=14 Score=45.49 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCeeeeechhHHHHHhh-cccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 435 RQSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 435 R~al~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
...+.++-+..|+++ ++|+...=|.+.| |.....+ . ....+|+|+|||||.+++++
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~--~--~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTG--G--ADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccC--C--CCCEEEEEecCCeeeEEEec
Confidence 445556666679998 7888777777666 4443322 1 24589999999999999886
No 171
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=73.16 E-value=3.5 Score=41.21 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.4
Q ss_pred ceEEEEEcCCcceEEEEEECCC
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGV 57 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~ 57 (1212)
|.++|||+|+.++++|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 6789999999999999999764
No 172
>PRK10854 exopolyphosphatase; Provisional
Probab=72.98 E-value=13 Score=46.07 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCeeeeechhHHHHHhh-cccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 435 RQSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 435 R~al~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
...+.++-+..|+++ .+|+...=|.+.| |...... . ....+++|+|||||.+++++
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~---~-~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP---E-KGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC---C-CCCeEEEEeCCCeEEEEEec
Confidence 334555556679998 7888777777666 4443322 1 35689999999999999986
No 173
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=71.76 E-value=14 Score=41.51 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-----CcccCCCCchhHHHhhHHHHH
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-----VELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-----~~i~~~~n~deaVA~GAa~~a 674 (1212)
++....+.+...+..++...+..... |+|+||..+...+.+.+.+.+. .++.....|....|.||+++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 33444445555555566555433222 9999999999777777755553 334566788999999999986
No 174
>KOG1385|consensus
Probab=71.66 E-value=11 Score=44.02 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=82.4
Q ss_pred EEEEecCceeEEEEEEeC-----CCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCC
Q psy18164 285 VMSVDLGSEWMKVAIVSP-----GVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 359 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~-----g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~ 359 (1212)
++-||=|+|-++|=++.= +.|+++ ..+-=+...|=.-+|.++ |......+..||.
T Consensus 69 ~iiiDAGSTGsRvHvY~F~~~~~~~~p~l-e~E~F~~~kPGLSsfadd---------------p~~aA~Sl~~LLd---- 128 (453)
T KOG1385|consen 69 AIIIDAGSTGTRVHVYKFDQCLPGMPPEL-EHELFKEVKPGLSSFADD---------------PEEAANSLRPLLD---- 128 (453)
T ss_pred EEEEecCCCcceEEEEEeccCCCCCCchh-HHHHHhhcCCcccccCCC---------------hHHHHHhHHHHHH----
Confidence 678999999999988842 222211 111111122333333222 3333334444443
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHH
Q psy18164 360 SPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 360 ~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~ 439 (1212)
.-+...|...... ..++++..-|-.+.+.+-...+|+.+++..+....-++..-.|+|=
T Consensus 129 -----~A~~~vP~~~~~k----TPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm------------ 187 (453)
T KOG1385|consen 129 -----VAEAFVPREHWKK----TPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIM------------ 187 (453)
T ss_pred -----HHHhhCCHhHhcc----CceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeec------------
Confidence 2233344432222 2356666556778899999999999999887543333322112221
Q ss_pred HHHHHcCCCeeeeechhHH--HHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 440 KAGELAGLKVLQLMNDYTA--VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 440 ~Aa~~AGl~~~~li~EptA--aAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
.=-+|..- ..++|....-.. .....+.++|+|||+|+++..-
T Consensus 188 -----------~GtdEGv~aWiTiN~Llg~L~~---~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 188 -----------DGTDEGVYAWITINYLLGTLGA---PGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -----------cCcccceeeeeehhhhhcccCC---CCCCceEEEEcCCceEEEEEec
Confidence 11112211 134554433211 1146799999999999998775
No 175
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=71.35 E-value=17 Score=40.91 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=55.7
Q ss_pred EEeHHHHHHHHHH---HHHHHHHHHHHHHHh-cCCCC--CCccEEEEEcC--CcCCH-HHHHHHHHHhCCcccCCCCchh
Q psy18164 594 LVTRAEFEALNED---LFDRVGYPVEQALKS-SAVPM--DVISQVILVGA--GTRVP-KVQEKITKVVGVELSKNLNTDE 664 (1212)
Q Consensus 594 ~itR~efe~l~~~---l~~~i~~~i~~~L~~-a~~~~--~~i~~ViLvGG--ssriP-~Vq~~l~~~fg~~i~~~~n~de 664 (1212)
..+++||.+.+.. ....+..++.-+... +.+.. ...+.|+|.|- .+|.| .|++.|++.|..++. .+.. +
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-k 299 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-E 299 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-h
Confidence 5678888876632 333333333333222 12111 23457999987 99999 999999999984332 2333 8
Q ss_pred HHHhhHHHHHHhhcCC
Q psy18164 665 AAALGAVYKAADLSTG 680 (1212)
Q Consensus 665 aVA~GAa~~aa~ls~~ 680 (1212)
++|.|+|+.|.-+...
T Consensus 300 sAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 300 SAAIGLALIAEDIFSG 315 (326)
T ss_pred hhhhhHHHHHHHHhCC
Confidence 9999999999988776
No 176
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=71.23 E-value=16 Score=43.03 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.9
Q ss_pred cCceEEEEecCceeEEEEEEe
Q psy18164 281 YGIAVMSVDLGSEWMKVAIVS 301 (1212)
Q Consensus 281 ~~~~vvGID~Gtt~s~va~~~ 301 (1212)
.+..++.||||.||.+|+.+.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCCCEEEEecCCceEEEEEEE
Confidence 567899999999999999985
No 177
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=69.45 E-value=72 Score=37.06 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=93.3
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
..+.+|+++|| ++-+.+- . .| . .|+ ++|.--|-.-||..+..+..+.|.+....-..=.-+.
T Consensus 162 ~~~r~vlNiGG----IaNlt~l--~---~~------~-~v~--g~DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~ 223 (371)
T COG2377 162 RERRAVLNIGG----IANLTYL--P---PG------G-PVL--GFDTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDE 223 (371)
T ss_pred CCCeEEEeccc----eEEEEec--C---CC------C-cee--eeecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCH
Confidence 47799999998 3444432 1 11 2 344 4556678888999999988877765221111101122
Q ss_pred HHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHH---HHH-HHHHHHHHHH-HHHHHhcCCCCCCcc
Q psy18164 556 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA---LNE-DLFDRVGYPV-EQALKSSAVPMDVIS 630 (1212)
Q Consensus 556 ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~---l~~-~l~~~i~~~i-~~~L~~a~~~~~~i~ 630 (1212)
....+|+ .+..++...- ..-+-.+|...--...++. +-. +...-+..+- ..+++....-..+-+
T Consensus 224 ~ll~~ll-----~~p~F~~~~P------kStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~eltA~tIv~s~~~~~~~p~ 292 (371)
T COG2377 224 ALLARLL-----AHPYFALPAP------KSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVELTAATIVKSVATLQGDPR 292 (371)
T ss_pred HHHHHHh-----hCCcccCCCc------ccCCccccchhhHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 2223332 2333332221 1112223333222222222 111 1111111111 122222233455678
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhC-Cccc----CCCCchhHHHhhHHHHHHhhc
Q psy18164 631 QVILVGAGTRVPKVQEKITKVVG-VELS----KNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 631 ~ViLvGGssriP~Vq~~l~~~fg-~~i~----~~~n~deaVA~GAa~~aa~ls 678 (1212)
.++++||+.+-|.+.+.|...+. ..+. ..+++|..=|.+-|+.|...-
T Consensus 293 ~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l 345 (371)
T COG2377 293 RLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTL 345 (371)
T ss_pred eeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHH
Confidence 99999999999999999999994 3443 257788777788888887653
No 178
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=69.11 E-value=15 Score=43.93 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=57.6
Q ss_pred eHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEAL-NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~l-~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|++|-.. ++.+.=++.+.++..=++++. .+..+-+=||.++..++.+.+.+.+|.++.++.+. |..|+||||.|
T Consensus 372 ~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~-EtTAlGaA~lA 447 (499)
T COG0554 372 TKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVVL-ETTALGAAYLA 447 (499)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeeccccc-hhhHHHHHHHH
Confidence 45554432 223333444444444444454 57888899999999999999999999888776655 68899999999
Q ss_pred HhhcCCc
Q psy18164 675 ADLSTGF 681 (1212)
Q Consensus 675 a~ls~~f 681 (1212)
..-.+.+
T Consensus 448 Gla~G~w 454 (499)
T COG0554 448 GLAVGFW 454 (499)
T ss_pred hhhhCcC
Confidence 8766643
No 179
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=68.50 E-value=4.8 Score=37.46 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.0
Q ss_pred ceEEEEEcCCcceEEEEEECC
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g 56 (1212)
|.++|||+|.|++.+|+.+..
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC
Confidence 457999999999999998654
No 180
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=68.30 E-value=20 Score=43.90 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccceEE-EecCCC-CCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhh-cccccccCCC
Q psy18164 397 EELVAMLLHKAREYASVSAGQVINEAV-IIVPGY-FNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNE 473 (1212)
Q Consensus 397 eel~a~~L~~lk~~a~~~~~~~i~~~V-ItVP~~-f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~ 473 (1212)
++.+...+.-|+..++...+..+..+. |+.-+. --.+.-..+..+-+..|+++ .+|+.-+=|-+.| |.-+..+ .
T Consensus 51 ~eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~--~ 127 (492)
T COG0248 51 EEAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLP--R 127 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhcCC--C
Confidence 344455566666666555555555522 221110 01122346788888889997 6776655555544 4433322 1
Q ss_pred CCCeEEEEEEcCCCceeEEEEE
Q psy18164 474 TNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 474 ~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
....+|+|+|||||.+++..
T Consensus 128 --~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 128 --KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred --CCCEEEEEecCCeEEEEEec
Confidence 46799999999999999996
No 181
>PRK09604 UGMP family protein; Validated
Probab=66.87 E-value=2.5e+02 Score=32.66 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh---CCcccCCC---CchhHHHhhHHHHH
Q psy18164 611 VGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV---GVELSKNL---NTDEAAALGAVYKA 674 (1212)
Q Consensus 611 i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f---g~~i~~~~---n~deaVA~GAa~~a 674 (1212)
+.+.++.+++.. .++.|+|.||...-.++++.|.+.+ |.++..+. -.|.+++.|++=+-
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 334444444432 4678999999999999999999988 44444333 46899999998443
No 182
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=65.53 E-value=56 Score=41.82 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCC--HHHHH-HHHHHhC-C--------cc-cCCCCchhHHHh
Q psy18164 602 ALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV--PKVQE-KITKVVG-V--------EL-SKNLNTDEAAAL 668 (1212)
Q Consensus 602 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssri--P~Vq~-~l~~~fg-~--------~i-~~~~n~deaVA~ 668 (1212)
.++...++.....+-.++...-...++.+.|+|-||-++- +++.+ .+.+.|- + .+ ..-+--+.+.-.
T Consensus 243 ~~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~ 322 (638)
T PRK14101 243 ALALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFL 322 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHH
Confidence 3444566666666555554433333346778888887632 55553 5666663 1 11 111223346677
Q ss_pred hHHHHHH
Q psy18164 669 GAVYKAA 675 (1212)
Q Consensus 669 GAa~~aa 675 (1212)
|||-++.
T Consensus 323 Gaa~~~~ 329 (638)
T PRK14101 323 GVSAILA 329 (638)
T ss_pred HHHHHHH
Confidence 8855444
No 183
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.25 E-value=7.9 Score=49.10 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=25.4
Q ss_pred EecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 205 LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 205 li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
+.+-|.|-.++..+-.... .+ +++++||||.|+|++++.
T Consensus 258 I~SGPAagvvGAa~ltg~~----~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 258 ILSGPAAGVVGAAYLTGLK----AG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred EeeccHHHHHHHHHhcccc----cC-CEEEEEcCCcceeeeeee
Confidence 4445655555444321111 12 599999999999999987
No 184
>PRK14878 UGMP family protein; Provisional
Probab=65.21 E-value=2.7e+02 Score=32.32 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=30.0
Q ss_pred ccEEEEEcCCcCCHHHHHHHHHHh---CCcccCCC---CchhHHHh
Q psy18164 629 ISQVILVGAGTRVPKVQEKITKVV---GVELSKNL---NTDEAAAL 668 (1212)
Q Consensus 629 i~~ViLvGGssriP~Vq~~l~~~f---g~~i~~~~---n~deaVA~ 668 (1212)
+..|+|.||-..-.++++.|.+.+ |.++..+. -.|.+++.
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 678999999999999999999877 43443332 34666666
No 185
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=64.42 E-value=5.9 Score=36.85 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.9
Q ss_pred ceEEEEecCceeEEEEEEeCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g 303 (1212)
|.++|||+|.+++++|++.+.
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC
Confidence 358999999999999999643
No 186
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=63.61 E-value=20 Score=42.11 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC-cc------cCCCCchhHHHhhHHHHHHh
Q psy18164 605 EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV-EL------SKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 605 ~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~-~i------~~~~n~deaVA~GAa~~aa~ 676 (1212)
.-+.+=+...|.+.++... ..++.|+++||+.+-|++.+.|++.++. .+ ..+.+.-||++. |++|+.
T Consensus 264 aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~La~~ 337 (364)
T PF03702_consen 264 ATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWLAYR 337 (364)
T ss_dssp HHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHHHHH
Confidence 3333334444555555543 2378999999999999999999999973 33 334455566554 556654
No 187
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=60.39 E-value=9.2 Score=38.40 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.6
Q ss_pred CceEEEEEcCCcceEEEEEECC
Q psy18164 35 GIAVMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 35 ~~~vvGIDfGTt~s~va~~~~g 56 (1212)
.|.++|||+|+..+++|+.++.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 4679999999999999998865
No 188
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=58.74 E-value=1.2e+02 Score=35.25 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHHH
Q psy18164 972 KIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERH 1010 (1212)
Q Consensus 972 ~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R~ 1010 (1212)
.|+++++||-+ ++. +++.+.+++.+-++..-||--++
T Consensus 9 ~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~sILPlRL~F 45 (379)
T PF11593_consen 9 KLEELEEKLAS-NDN-SKDSVMDKISEAQDSILPLRLQF 45 (379)
T ss_pred cHHHHHHHHhc-CCc-hHHHHHHHHHHHHhccccHHHHH
Confidence 58899999984 344 99999999999999999987654
No 189
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=58.57 E-value=10 Score=38.00 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=18.9
Q ss_pred ceEEEEecCceeEEEEEEeCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g 303 (1212)
|.++|||+|+..+.+|+..+.
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 679999999999999999887
No 190
>PRK00976 hypothetical protein; Provisional
Probab=58.36 E-value=33 Score=39.44 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=39.5
Q ss_pred CccEEEEEcCCcCCH--HHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVP--KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP--~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
+.+.|+|-||-++.+ .+.+.|++.+... ...-..++.++|||+.|..+...
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCC
Confidence 477899999999998 7888888888643 22234589999999999876554
No 191
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=56.50 E-value=92 Score=34.53 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCccceEEE--ecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEE
Q psy18164 416 GQVINEAVI--IVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 493 (1212)
Q Consensus 416 ~~~i~~~VI--tVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsv 493 (1212)
+..+...+. .+|.+||.- +++++++.-.|.+. -+++-..||.+.......- . . ...++++|+|-|+|-+.+
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v--~-~-~~~~~~vniGN~HTlaa~ 183 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEV--S-S-REGIIVVNIGNGHTLAAL 183 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChhh--h-c-cCCeEEEEeCCccEEEEE
Confidence 456667777 799997654 56667767676666 4455554444433222221 1 1 567999999999999998
Q ss_pred EE
Q psy18164 494 VS 495 (1212)
Q Consensus 494 v~ 495 (1212)
++
T Consensus 184 v~ 185 (254)
T PF08735_consen 184 VK 185 (254)
T ss_pred Ee
Confidence 85
No 192
>KOG0994|consensus
Probab=56.24 E-value=4.1e+02 Score=35.47 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.1
Q ss_pred eEEEecCCCCCHHHHHHHHHH
Q psy18164 421 EAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 421 ~~VItVP~~f~~~qR~al~~A 441 (1212)
++-.-+|.||.++-|+.-.+.
T Consensus 999 hCe~Ck~Gf~GdA~~q~CqrC 1019 (1758)
T KOG0994|consen 999 HCEHCKDGFYGDALRQNCQRC 1019 (1758)
T ss_pred chhhccccchhHHHHhhhhhh
Confidence 466778999999888776654
No 193
>PLN02939 transferase, transferring glycosyl groups
Probab=56.11 E-value=2.8e+02 Score=36.82 Aligned_cols=179 Identities=15% Similarity=0.128 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-ccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCC-
Q psy18164 911 EKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL-EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE- 988 (1212)
Q Consensus 911 ~eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~-~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~- 988 (1212)
+++++.++.++.+...-|+..+.++.-+.-|++++-++..++-. .+-.....+-+.+.+.++++.+..-|+--...++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (977)
T PLN02939 239 KDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEK 318 (977)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888889999888999999999999888888742 1111223333444566666666665542111111
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHh---hccchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHhhhhhhcccc
Q psy18164 989 ADVLENKLNEINSLVVPIWERHRE---HQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLS 1065 (1212)
Q Consensus 989 ~~~~~~Kl~eL~~~~~pi~~R~~e---~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~ 1065 (1212)
.-..-++-++|++..+.+..-..| ++.++..++.+++.+...+..+..-.. +. ...++.-
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~---- 381 (977)
T PLN02939 319 AALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDH-----------EI--HSYIQLY---- 381 (977)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHH-----------HH--HHHHHHH----
Confidence 111122233333333333332222 334566666565555555444433110 00 0111222
Q ss_pred chhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhh----cCCCCCccccHHHHHHHHHHH
Q psy18164 1066 MVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQ----LKKSDPIVLTIRSIVEKIRAL 1127 (1212)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~W~~~~~~~q~~----l~~~~dp~~~~~~i~~k~~~l 1127 (1212)
...+++.+.-++...+++.+ .|..+-|.-.|++|-..++.+
T Consensus 382 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 382 ---------------------QESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred ---------------------HHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 45566666666666666665 345556666777777766655
No 194
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=55.92 E-value=30 Score=29.25 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=30.3
Q ss_pred HHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCe
Q psy18164 411 ASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 449 (1212)
Q Consensus 411 a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~ 449 (1212)
.+++.... ...++.|+.++..+|..+.+.|...||..
T Consensus 8 i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 8 LEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 34444433 67899999999999999999999999975
No 195
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=55.56 E-value=11 Score=41.62 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=17.6
Q ss_pred EEEEEcCCcceEEEEEECCC
Q psy18164 38 VMSVDLGSEWMKVAIVSPGV 57 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~ 57 (1212)
+||||+|||++++++++..+
T Consensus 2 ~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEECSSEEEEEEEETTS
T ss_pred EEEEEEcccceEEEEEeCCC
Confidence 58999999999999998543
No 196
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=55.41 E-value=7.7 Score=44.55 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=16.5
Q ss_pred EEEEEecCCceEEEEEEE
Q psy18164 231 HVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 231 ~vlV~D~GggT~Dvsvv~ 248 (1212)
+++++||||.|+|++++.
T Consensus 129 ~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CEEEEEcCccceeeEEec
Confidence 699999999999999974
No 197
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=54.44 E-value=11 Score=37.86 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=19.1
Q ss_pred ceEEEEEcCCcceEEEEEECC
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g 56 (1212)
|.++||||||-.+++|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 678999999999999998865
No 198
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=54.24 E-value=21 Score=41.67 Aligned_cols=64 Identities=28% Similarity=0.233 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 185 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
......+.++++.||++...+=-+|-|.+-.|...............++++|+|+.++.++++.
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~ 198 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ 198 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE
Confidence 4567788999999999876554455554433333111111112345899999999999998865
No 199
>PRK03011 butyrate kinase; Provisional
Probab=53.57 E-value=21 Score=41.98 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=36.9
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhC----CcccCCCCchhHHHhhHH
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVG----VELSKNLNTDEAAALGAV 671 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg----~~i~~~~n~deaVA~GAa 671 (1212)
++|.|+|.||.+..+.+.+.|++.+. ..+....+.++|.+.||+
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHH
Confidence 68999999999999999998887775 355666777889999986
No 200
>PRK09698 D-allose kinase; Provisional
Probab=53.41 E-value=1.5e+02 Score=33.88 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=31.0
Q ss_pred CccEEEEEcCCcCC-----HHHHHHHHHHhC-------CcccCCCCchhHHHhhHHHHHH
Q psy18164 628 VISQVILVGAGTRV-----PKVQEKITKVVG-------VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 628 ~i~~ViLvGGssri-----P~Vq~~l~~~fg-------~~i~~~~n~deaVA~GAa~~aa 675 (1212)
+.+.|+|-||.++. +.+++.+++..- .++......+.+.++|||+.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 46778887777664 345666665432 1234455567889999998864
No 201
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=52.34 E-value=14 Score=40.91 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=17.0
Q ss_pred EEEEecCceeEEEEEEeCC
Q psy18164 285 VMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g 303 (1212)
++|||+||++++++++...
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 6899999999999999743
No 202
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=52.05 E-value=47 Score=39.29 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCC--ceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccchhhhhH
Q psy18164 188 RQSMLKAGELAGL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMKISLVT 265 (1212)
Q Consensus 188 r~~l~~Aa~~AGl--~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~~~~~~ 265 (1212)
.+.+.++.+.-|+ +++.++++.+++.++-.+.. ...++-|=||-||=-+-+..+.+ -+++.-
T Consensus 184 v~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~--------~~~~iG~IfGTGtN~~y~e~~~~-ipkl~~------- 247 (466)
T COG5026 184 VRLLQEALSARNLPIRVVAVINDTTGTLLASVYTS--------SETIIGIIFGTGTNGCYCEPKGR-IPKLPR------- 247 (466)
T ss_pred HHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcC--------CCCeEEEEEecCccceEEeeccc-CCcCcc-------
Confidence 3445555555555 47789999999988665433 23678888999987665555443 222221
Q ss_pred HHHHHHHHHHhhhcccCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe--cCcEeecHHHH
Q psy18164 266 LCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH--KGERTFGEDAQ 336 (1212)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~--~~~r~~G~~A~ 336 (1212)
.-+.+... .++-.-.|++.-.-..... ...+++....+.+ |....|. -.+.+.|+-..
T Consensus 248 ---------d~~~~~~p-m~iN~EwGsfdn~~~~Lp~-t~ydv~idq~s~~--pg~~~~Ek~~sG~yLGellr 307 (466)
T COG5026 248 ---------DDLPETGP-MLINCEWGSFDNELSVLPR-TKYDVLIDQESPN--PGHQIFEKMSSGMYLGELLR 307 (466)
T ss_pred ---------ccccccCC-eEEEecccccCcceeeccc-cceeeeeccCCCC--cchHHHhhhhcceeHHHHHH
Confidence 11122333 3456677777632222222 2445555554332 4444442 23455565543
No 203
>PRK04863 mukB cell division protein MukB; Provisional
Probab=50.41 E-value=6.5e+02 Score=35.65 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=15.6
Q ss_pred eHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy18164 596 TRAEFEALNED-LFDRVGYPVEQALKSS 622 (1212)
Q Consensus 596 tR~efe~l~~~-l~~~i~~~i~~~L~~a 622 (1212)
.|+.|..++.- +.-++..-|.+.|.+.
T Consensus 193 dR~kF~kLf~taiy~~i~~~i~~fl~~y 220 (1486)
T PRK04863 193 DRSKFYRLIEASLYGGISSAITRSLRDY 220 (1486)
T ss_pred hHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 36777777764 3335555555555543
No 204
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=49.74 E-value=78 Score=37.28 Aligned_cols=61 Identities=18% Similarity=0.386 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccC----CCCchhHHHhhHHHHHHh
Q psy18164 613 YPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSK----NLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 613 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~----~~n~deaVA~GAa~~aa~ 676 (1212)
..|.++++... ...+.|+++||+++-|++.+.|++.++..+.. .+++|--=|+.-|+.|..
T Consensus 274 ~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 274 ASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 34445554332 22468999999999999999999998522211 244443344455666654
No 205
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=49.53 E-value=42 Score=36.24 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCceeEEEEEEE
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQ 497 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~ 497 (1212)
.+.+|++|+||.++-+++|++.
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~ 83 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELS 83 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEE
T ss_pred CceEEEEeecCcEEEEEEEEEc
Confidence 5789999999999999999997
No 206
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=48.90 E-value=48 Score=28.15 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=32.0
Q ss_pred HHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCe
Q psy18164 408 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 449 (1212)
Q Consensus 408 k~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~ 449 (1212)
.+..+++.... ....++.|+.++..+|..+.+.|+..||+.
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 34444444332 357789999999999999999999999976
No 207
>PLN02920 pantothenate kinase 1
Probab=48.27 E-value=69 Score=37.75 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=37.3
Q ss_pred CCCccEEEEEcCCcCCH-HHHHHHHHHh---C---CcccCCCCchhHHHhhHHHHHH
Q psy18164 626 MDVISQVILVGAGTRVP-KVQEKITKVV---G---VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 626 ~~~i~~ViLvGGssriP-~Vq~~l~~~f---g---~~i~~~~n~deaVA~GAa~~aa 675 (1212)
...++.|+++|+..|.+ ..++.|.-++ . .+....-+...+-|+||.+...
T Consensus 295 ~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 295 RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 34688999999999998 7777555443 2 3556667788899999987654
No 208
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.41 E-value=94 Score=34.26 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=54.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCC
Q psy18164 426 VPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 505 (1212)
Q Consensus 426 VP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g 505 (1212)
+|.+|+.- |.+...| ..+|-. ..+++.--||+....+... ....||+|+|-|++.++++.=
T Consensus 186 iPe~FtRM-raaa~sa-l~~~t~-av~mDskfaav~gal~dpa-------a~palvVd~GngHttaalvde--------- 246 (342)
T COG4012 186 IPESFTRM-RAAAMSA-LSAGTD-AVAMDSKFAAVMGALVDPA-------ADPALVVDYGNGHTTAALVDE--------- 246 (342)
T ss_pred CchhHHHH-HHHHHHH-HhcCce-EEEEcchhHhhhhcccCcc-------cCceEEEEccCCceEEEEecC---------
Confidence 67777632 3322222 223333 3566666666655544322 347999999999999999861
Q ss_pred ccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q psy18164 506 FVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFN 542 (1212)
Q Consensus 506 ~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~ 542 (1212)
.++.-+-......|.-..|..-|.++...++.
T Consensus 247 -----dRI~gv~EHHT~~Lspekled~I~rf~~GeL~ 278 (342)
T COG4012 247 -----DRIVGVYEHHTIRLSPEKLEDQIIRFVEGELE 278 (342)
T ss_pred -----CeEEEEeecccccCCHHHHHHHHHHHHhcccc
Confidence 14444444445566666666666666655543
No 209
>KOG1385|consensus
Probab=46.92 E-value=71 Score=37.58 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=51.2
Q ss_pred ceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCc-cccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHH-
Q psy18164 135 GTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQV-INEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV- 212 (1212)
Q Consensus 135 ~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~-~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AA- 212 (1212)
-.+.+....|-..-+.+-...+|+.+++..+...--+ +.++ |+|=.. .+|-+-|
T Consensus 142 TPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~-VsIm~G-----------------------tdEGv~aW 197 (453)
T KOG1385|consen 142 TPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDA-VSIMDG-----------------------TDEGVYAW 197 (453)
T ss_pred CceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCc-eeeccC-----------------------cccceeee
Confidence 3456666678888899999999999999887432211 1222 222111 1111111
Q ss_pred -HHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEE
Q psy18164 213 -ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 249 (1212)
Q Consensus 213 -al~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~ 249 (1212)
.+.|.+..-. ......|.|+|+|||++.++..--
T Consensus 198 iTiN~Llg~L~---~~~~~tvgv~DLGGGSTQi~f~p~ 232 (453)
T KOG1385|consen 198 ITINYLLGTLG---APGHRTVGVVDLGGGSTQITFLPT 232 (453)
T ss_pred eehhhhhcccC---CCCCCceEEEEcCCceEEEEEecC
Confidence 2334433221 112458999999999999987643
No 210
>PLN02362 hexokinase
Probab=46.34 E-value=59 Score=40.04 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHcCC--ceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEE
Q psy18164 184 NQIERQSMLKAGELAGL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTV 244 (1212)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl--~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dv 244 (1212)
...-.+.+.+|...-|+ +++.+||+.+|..++..+... ...+-+=+|-||=-+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~--------~~~iG~IlGTGtNac 258 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDP--------DTVAAVIIGTGTNAC 258 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCC--------CceEEEEEECCccce
Confidence 44455666677766665 578899999999886554322 245566678875433
No 211
>PRK02224 chromosome segregation protein; Provisional
Probab=46.26 E-value=4.8e+02 Score=34.83 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhh
Q psy18164 907 STLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLE 981 (1212)
Q Consensus 907 ~~ls~eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~ 981 (1212)
..+++.+...+..++-.+..-+.......+++..++...-.++..+. .+...+.+.++..+...+.+...=+.
T Consensus 144 l~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~l~~~~~~l~ 216 (880)
T PRK02224 144 INATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD--QLKAQIEEKEEKDLHERLNGLESELA 216 (880)
T ss_pred HcCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999998877777766666666666666666666553 23333333444555555555544443
No 212
>KOG2708|consensus
Probab=45.93 E-value=2.1e+02 Score=30.91 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=48.1
Q ss_pred EEeHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc--cCCCCchhHHHhhH
Q psy18164 594 LVTRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL--SKNLNTDEAAALGA 670 (1212)
Q Consensus 594 ~itR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i--~~~~n~deaVA~GA 670 (1212)
++|.+++-- |-+.+|.-+.+.-++++..++ -+.|++|||-..--.+|++...+....- ....|-..|+-.|+
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~ 298 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGV 298 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCch
Confidence 455555432 233456666666677776554 3579999999999999999988875322 22334445666666
Q ss_pred HHHH
Q psy18164 671 VYKA 674 (1212)
Q Consensus 671 a~~a 674 (1212)
-+.-
T Consensus 299 MIA~ 302 (336)
T KOG2708|consen 299 MIAQ 302 (336)
T ss_pred HHHH
Confidence 5433
No 213
>PLN02362 hexokinase
Probab=45.52 E-value=42 Score=41.30 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=18.9
Q ss_pred cCceEEEEecCceeEEEEEEeC
Q psy18164 281 YGIAVMSVDLGSEWMKVAIVSP 302 (1212)
Q Consensus 281 ~~~~vvGID~Gtt~s~va~~~~ 302 (1212)
.....++||||.||.+|+.+.=
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L 114 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQL 114 (509)
T ss_pred cceeEEEEecCCceEEEEEEEe
Confidence 4567899999999999999953
No 214
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=44.87 E-value=52 Score=27.83 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=26.9
Q ss_pred cEEEccCCCCCHHHHHHHHHHHHHcCCce
Q psy18164 174 EAVIIVPGYFNQIERQSMLKAGELAGLKV 202 (1212)
Q Consensus 174 ~~VitVPa~f~~~qr~~l~~Aa~~AGl~~ 202 (1212)
...++.|+.++..+|..+.+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 57789999999999999999999999975
No 215
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=44.13 E-value=14 Score=42.38 Aligned_cols=51 Identities=8% Similarity=0.235 Sum_probs=30.5
Q ss_pred EeHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy18164 595 VTRAEFEALNEDLFDR----VGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 595 itR~efe~l~~~l~~~----i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg 653 (1212)
++-++.+++..-+++. +.+-|+.++.+.|.++ +..||.. |++-..+.+.+|
T Consensus 245 ~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp------v~~gGaG--~~~a~~lA~~lg 299 (318)
T TIGR03123 245 LGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT------VVAAGAG--EFLAKEAAARLG 299 (318)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecch--HHHHHHHHHHcC
Confidence 3445566666655544 4445555555555443 5555555 888788888777
No 216
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=42.67 E-value=26 Score=35.16 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.5
Q ss_pred CceEEEEecCceeEEEEEEeCC
Q psy18164 282 GIAVMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 282 ~~~vvGID~Gtt~s~va~~~~g 303 (1212)
.|.++|||+|+..+.+|+..+.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 4679999999999999998764
No 217
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=42.40 E-value=2.7e+02 Score=31.90 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=26.4
Q ss_pred cCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCC
Q psy18164 445 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAW 487 (1212)
Q Consensus 445 AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Ggg 487 (1212)
.|+++ .+-|+..|+|++-.+..... . ..+++++-+|-|
T Consensus 106 ~~~Pv-~veNDan~aalaE~~~g~~~---~-~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLPV-FVENDANAAALAEAWFGAGR---G-IDDVVYITLGTG 143 (314)
T ss_pred HCCCE-EEecHHHHHHHHHHHhCCCC---C-CCCEEEEEEccc
Confidence 45555 89999999999876654421 1 456777777766
No 218
>PLN02405 hexokinase
Probab=41.86 E-value=94 Score=38.20 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHcCCc--eEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 184 NQIERQSMLKAGELAGLK--VLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~--~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
...-.+.+.+|+..-|++ ++.+||+.++..++..+... ...+-+=+|-||=-+.+-+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~--------~~~iG~IlGTGtNacY~E~ 262 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP--------DVVAAVILGTGTNAAYVER 262 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC--------CceEEEEEeCCeeeEEEee
Confidence 455566777777777775 78899999998886665432 2456666788865444433
No 219
>PLN02377 3-ketoacyl-CoA synthase
Probab=41.69 E-value=60 Score=39.94 Aligned_cols=76 Identities=14% Similarity=0.054 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEE-EcCCcCCHHHHHHHHHHhCCc---ccCCCCchhHHHhhHHHHHH
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL-VGAGTRVPKVQEKITKVVGVE---LSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViL-vGGssriP~Vq~~l~~~fg~~---i~~~~n~deaVA~GAa~~aa 675 (1212)
++...++..+-+...++++|+++|++++|||.|++ +.|....|.+-.+|.+.+|.. ...+++..-|.+...++.-|
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL~lA 244 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLA 244 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHHHHH
Confidence 33344444455667788999999999999999977 444446899999999999932 34566654555544444433
No 220
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.44 E-value=1e+02 Score=26.56 Aligned_cols=54 Identities=28% Similarity=0.292 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhh
Q psy18164 928 EHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLE 981 (1212)
Q Consensus 928 D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~ 981 (1212)
|++..+...-...++..|-.+..+|.++.|....+++-.+.-+..+.++..=+.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~ 56 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELE 56 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 455566667777888888888999998999999999998888888877765543
No 221
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=40.12 E-value=34 Score=38.79 Aligned_cols=68 Identities=16% Similarity=0.019 Sum_probs=46.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHcCC-cc-ceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechh-HHHHHh
Q psy18164 392 ELYHVEELVAMLLHKAREYASVSAGQ-VI-NEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY-TAVALN 462 (1212)
Q Consensus 392 ~~~~~eel~a~~L~~lk~~a~~~~~~-~i-~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~Ep-tAaAl~ 462 (1212)
..++.+++++-+...+.+.....+.. .+ ..++++=+..++..-++++.+- .|.++..+-.+| .+.|+.
T Consensus 211 ~G~~~edI~aGl~~sia~rv~~~~~~~~i~~~v~~~GGva~N~~l~~al~~~---Lg~~v~~~p~~p~~~GAlG 281 (293)
T TIGR03192 211 AGYTKNMVIAAYCQAMAERVVSLLERIGVEEGFFITGGIAKNPGVVKRIERI---LGIKAVDTKIDSQIAGALG 281 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCEEEECcccccHHHHHHHHHH---hCCCceeCCCCccHHHHHH
Confidence 35788999999888887776555432 22 3589999999999988888764 477665343344 344443
No 222
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=40.01 E-value=70 Score=37.74 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=56.2
Q ss_pred EEEeHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCCccE-EEEEcCCcCCHHHHHHHHHHhC-CcccC-CCCchhHHHh
Q psy18164 593 LLVTRAEFEALNEDLFDRV-GYPVEQALKSSAVPMDVISQ-VILVGAGTRVPKVQEKITKVVG-VELSK-NLNTDEAAAL 668 (1212)
Q Consensus 593 ~~itR~efe~l~~~l~~~i-~~~i~~~L~~a~~~~~~i~~-ViLvGGssriP~Vq~~l~~~fg-~~i~~-~~n~deaVA~ 668 (1212)
..-.+.++-..++..++++ ...++.++++.+ ++. |.|.||..---..-..|.+..+ .++.. +.-.|+.+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 3456777777777777655 456677777766 455 9999999877777777877755 44543 4455889999
Q ss_pred hHHHHHHhhcC
Q psy18164 669 GAVYKAADLST 679 (1212)
Q Consensus 669 GAa~~aa~ls~ 679 (1212)
|||++++....
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999986554
No 223
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.62 E-value=8.7e+02 Score=30.53 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy18164 966 SKTIVDKIDEITNWLEE 982 (1212)
Q Consensus 966 re~l~~~l~e~~~WL~e 982 (1212)
.++|...+..+..-|++
T Consensus 224 ~e~i~~~~~~~~~~L~~ 240 (563)
T TIGR00634 224 LEKLRELSQNALAALRG 240 (563)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34556666666666654
No 224
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=39.27 E-value=4.6e+02 Score=30.69 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=34.5
Q ss_pred CccEEEEEcCCcCC-HHHHHHHH---HHhC---CcccCCCCchhHHHhhHHHHH
Q psy18164 628 VISQVILVGAGTRV-PKVQEKIT---KVVG---VELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 628 ~i~~ViLvGGssri-P~Vq~~l~---~~fg---~~i~~~~n~deaVA~GAa~~a 674 (1212)
.+..|+++|+..|. |..++.|. .++. .+....-|..-+-|+||.+..
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 57899999999875 77888888 5553 355566688889999998753
No 225
>PRK10331 L-fuculokinase; Provisional
Probab=38.89 E-value=25 Score=43.19 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=17.4
Q ss_pred eEEEEEcCCcceEEEEEECC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g 56 (1212)
-++|||+|||++++++++..
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred eEEEEecCCCceEEEEEcCC
Confidence 36899999999999999754
No 226
>PLN02666 5-oxoprolinase
Probab=38.13 E-value=33 Score=46.86 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=25.6
Q ss_pred EecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEE
Q psy18164 205 LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 205 li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv 247 (1212)
+.+-|.|..+.+....... ....+++++||||.|||++++
T Consensus 292 i~SGPAagv~Gaa~l~~~~---~g~~~~I~~DmGGTTtDv~li 331 (1275)
T PLN02666 292 ILSGPAGGVVGYAQTTFGL---ETEKPVIGFDMGGTSTDVSRY 331 (1275)
T ss_pred EEECHHHHHHHHHHHhccc---cCCCCEEEEecCCceeeeEEE
Confidence 4445666666543322100 012479999999999999998
No 227
>KOG1369|consensus
Probab=38.08 E-value=43 Score=40.50 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=43.7
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCC---eeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEE
Q psy18164 426 VPGYFNQIERQSMLKAGELAGLK---VLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 497 (1212)
Q Consensus 426 VP~~f~~~qR~al~~Aa~~AGl~---~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~ 497 (1212)
++.-....--+.+.+|.+.-|+. +..++|++++.-++.++.. +..++-+=+|.||=-+-+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~--------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED--------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC--------CCcEEEEEECCCccceeeeecc
Confidence 33334445567788888887775 7789999999887665533 3456666678887776666654
No 228
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=37.98 E-value=1.8e+02 Score=32.44 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=36.3
Q ss_pred CCccEEEEEcCCcCCH----HHHHHHHHHhC-----Cccc--CCCCchhHHHhhHHHHHHhhcCC
Q psy18164 627 DVISQVILVGAGTRVP----KVQEKITKVVG-----VELS--KNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 627 ~~i~~ViLvGGssriP----~Vq~~l~~~fg-----~~i~--~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
...+.|+|.|-.+|+| -|++.|+++|. .++. ...-----.|.|||+.|..++++
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 3467899999999986 46677777763 2221 12222234688999999888765
No 229
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=37.88 E-value=26 Score=42.89 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=17.6
Q ss_pred EEEEEcCCcceEEEEEECCC
Q psy18164 38 VMSVDLGSEWMKVAIVSPGV 57 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~ 57 (1212)
++|||+|||++++++++..+
T Consensus 3 ilgiD~GTss~K~~l~d~~g 22 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQG 22 (465)
T ss_pred EEEEecCCCcEEEEEEcCCC
Confidence 68999999999999998543
No 230
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=36.99 E-value=3.4e+02 Score=30.36 Aligned_cols=50 Identities=10% Similarity=0.304 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHH-HHHhhhhcCC----CCCHHHHHHHHHHHHHhhHHHHHHHHhh
Q psy18164 964 NESKTIVDKIDE-ITNWLEEDGW----NAEADVLENKLNEINSLVVPIWERHREH 1013 (1212)
Q Consensus 964 eere~l~~~l~e-~~~WL~edg~----~a~~~~~~~Kl~eL~~~~~pi~~R~~e~ 1013 (1212)
.|.++|+.+|.. -+||++|+-- ....++-.+.+++|+.+.+-+...+.+.
T Consensus 89 tEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 89 TEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 445555555554 3578887521 1223344555566666666655555443
No 231
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=36.65 E-value=76 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=32.2
Q ss_pred HHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceE
Q psy18164 161 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVL 203 (1212)
Q Consensus 161 ~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~ 203 (1212)
.+....+.... ....++.|+.++..+|..+.+.|+..||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 34444444333 3567899999999999999999999999753
No 232
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=36.49 E-value=33 Score=34.50 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=19.1
Q ss_pred ceEEEEecCceeEEEEEEeCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g 303 (1212)
|.++|||||+-.+.||+..+.
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 679999999999999998765
No 233
>PRK15027 xylulokinase; Provisional
Probab=36.44 E-value=27 Score=43.01 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=17.0
Q ss_pred EEEEEcCCcceEEEEEECC
Q psy18164 38 VMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g 56 (1212)
+||||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 5899999999999999754
No 234
>PLN02405 hexokinase
Probab=36.00 E-value=1.3e+02 Score=36.90 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=32.3
Q ss_pred cCceEEEEecCceeEEEEEEeCC-CCeEEecCCCCCccceEEEEEecCcEeecHHHHH
Q psy18164 281 YGIAVMSVDLGSEWMKVAIVSPG-VPMEIALNKESKRKTPTLVAFHKGERTFGEDAQI 337 (1212)
Q Consensus 281 ~~~~vvGID~Gtt~s~va~~~~g-~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~ 337 (1212)
.....++||||.||.+|+.+.=+ ..-.++.....+..+|.-+--...+.+|+.-|..
T Consensus 93 E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~ 150 (497)
T PLN02405 93 EKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAA 150 (497)
T ss_pred cceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHH
Confidence 45679999999999999998532 1111121122234445444333344566666544
No 235
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=35.89 E-value=29 Score=43.45 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.4
Q ss_pred eEEEEEcCCcceEEEEEECC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g 56 (1212)
.++|||+|||++++++++..
T Consensus 1 ~~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDST 20 (541)
T ss_pred CEEEEEecCcCEEEEEEcCC
Confidence 36899999999999999754
No 236
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=35.36 E-value=68 Score=41.36 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=38.4
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhC---CcccCC---CCchhHHHhhHHHHHH
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVG---VELSKN---LNTDEAAALGAVYKAA 675 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg---~~i~~~---~n~deaVA~GAa~~aa 675 (1212)
.++.|+|.||..+-..+.+.|.+.++ .++..+ .-.|.+++.|.|+.||
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998875 333332 3469999999998875
No 237
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=35.33 E-value=41 Score=37.63 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=16.5
Q ss_pred EEEEecCceeEEEEEEeC
Q psy18164 285 VMSVDLGSEWMKVAIVSP 302 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~ 302 (1212)
++|||.||+++++.++..
T Consensus 3 ~~GIDiGStttK~Vlid~ 20 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEV 20 (262)
T ss_pred EEEEEcCcccEEEEEEec
Confidence 689999999999999984
No 238
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=35.09 E-value=28 Score=38.72 Aligned_cols=66 Identities=17% Similarity=0.010 Sum_probs=37.5
Q ss_pred eeHHHHHHHHHHHHHHHHHHHcC-Cccc-eEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechh-HHHHHhh
Q psy18164 394 YHVEELVAMLLHKAREYASVSAG-QVIN-EAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY-TAVALNY 463 (1212)
Q Consensus 394 ~~~eel~a~~L~~lk~~a~~~~~-~~i~-~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~Ep-tAaAl~y 463 (1212)
.+++++++.++..+-......+. ..+. .++++==...+..-++.+.+.. |.++ .+-.+| .++|+..
T Consensus 177 ~~~~di~~~~~~~va~~i~~~~~~~~~~~~Vvl~GGva~n~~l~~~l~~~l---g~~v-~~~~~~~~~~AlGa 245 (248)
T TIGR00241 177 VKKEDILAGVYESIAERVAEMLQRLKIEAPIVFTGGVSKNKGLVKALEKKL---GMKV-ITPPEPQIVGAVGA 245 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEECccccCHHHHHHHHHHh---CCcE-EcCCCccHHHHHHH
Confidence 46677777777766665544433 2344 5666644555666666665553 6654 445555 4666543
No 239
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=34.99 E-value=40 Score=32.73 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCC--HHHHHHHHHHhCC
Q psy18164 609 DRVGYPVEQALKSSAVPMDVISQVILVGAGTRV--PKVQEKITKVVGV 654 (1212)
Q Consensus 609 ~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssri--P~Vq~~l~~~fg~ 654 (1212)
..+...|+++|+++++++++|+.|+..|-++.. +.=.+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 455677999999999999999999999988876 3444568888884
No 240
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=34.76 E-value=31 Score=42.95 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.6
Q ss_pred eEEEEEcCCcceEEEEEECC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g 56 (1212)
-+||||+|||++++++++..
T Consensus 4 ~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 37999999999999999754
No 241
>PTZ00288 glucokinase 1; Provisional
Probab=34.47 E-value=87 Score=37.50 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=0.0
Q ss_pred ccCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCC
Q psy18164 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 359 (1212)
Q Consensus 280 ~~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~ 359 (1212)
+...-++|+|.|.|++++++++..+.
T Consensus 23 ~~~~~~~~~DiGgt~~R~~~~~~~~~------------------------------------------------------ 48 (405)
T PTZ00288 23 SSGPIFVGCDVGGTNARVGFAREVQH------------------------------------------------------ 48 (405)
T ss_pred ccCCeEEEEEecCCceEEEEEeccCC------------------------------------------------------
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcC--CceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHH--
Q psy18164 360 SPVVQLFKSRFPYYDIVADEERGTIVFKTN--DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIER-- 435 (1212)
Q Consensus 360 ~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR-- 435 (1212)
.+...-...+.+. .+.....-+.+...|.+|++...-. ..+..+||+||.=-...+.
T Consensus 49 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~iAvAGPV~~~~~~~ 109 (405)
T PTZ00288 49 -----------------DDSGVHIIYVRFNVTKTDIRELLEFFDEVLQKLKKNLSFI--QRVAAGAISVPGPVTGGQLAG 109 (405)
T ss_pred -----------------CCCceeEEEEecccccccHHHHHHHHHHHHHHHHhcCccc--cCcCeEEEEEeCceeCCEeec
Q ss_pred ---------HHHHHHHHHcCCCeeeeechhHHHHHhhcccccccC--------------------CC----CCCeEEEEE
Q psy18164 436 ---------QSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDF--------------------NE----TNPVHVMFY 482 (1212)
Q Consensus 436 ---------~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~--------------------~~----~~~~~vlv~ 482 (1212)
+.+-.-=.+.|+..+.|||+=+|.|+.-..-...+. .. .....++|+
T Consensus 110 ~~~~~~~~~~lTNlpw~i~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vl 189 (405)
T PTZ00288 110 PFNNLKGIARLTDYPVELFPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVL 189 (405)
T ss_pred cccccccccccCCCCchhcCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEE
Q ss_pred EcCCC
Q psy18164 483 DMGAW 487 (1212)
Q Consensus 483 D~Ggg 487 (1212)
=+|.|
T Consensus 190 g~GTG 194 (405)
T PTZ00288 190 APGTG 194 (405)
T ss_pred Eeccc
No 242
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=34.17 E-value=32 Score=42.66 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.6
Q ss_pred EEEEEcCCcceEEEEEECCC
Q psy18164 38 VMSVDLGSEWMKVAIVSPGV 57 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~ 57 (1212)
++|||+|||++++++++..+
T Consensus 4 ~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 68999999999999997543
No 243
>PLN02914 hexokinase
Probab=33.90 E-value=2.3e+02 Score=34.89 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=41.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC--ceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEe
Q psy18164 179 VPGYFNQIERQSMLKAGELAGL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 251 (1212)
Q Consensus 179 VPa~f~~~qr~~l~~Aa~~AGl--~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~ 251 (1212)
++..-...-.+.+.+|.+.-|+ +++.+||+.+|..++..+... ...+-+=+|-||=-+.+-+++.
T Consensus 199 ~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~--------~~~iGlIlGTGtNacY~E~~~~ 265 (490)
T PLN02914 199 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD--------DVMVAVILGTGTNACYVERTDA 265 (490)
T ss_pred cCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC--------CceEEEEEECCeeeEEEeeccc
Confidence 3333345556677777776665 478899999998876655432 2456666788866555544443
No 244
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.88 E-value=75 Score=34.97 Aligned_cols=58 Identities=22% Similarity=0.205 Sum_probs=36.5
Q ss_pred cCCCCCHHHHHHHHHHHHHc---CCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEE
Q psy18164 179 VPGYFNQIERQSMLKAGELA---GLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 249 (1212)
Q Consensus 179 VPa~f~~~qr~~l~~Aa~~A---Gl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~ 249 (1212)
+|.+|+. |+.|+..| |-. .-+++--.||+......... .-.||+|+|-|++..+++.=
T Consensus 186 iPe~FtR-----Mraaa~sal~~~t~-av~mDskfaav~gal~dpaa-------~palvVd~GngHttaalvde 246 (342)
T COG4012 186 IPESFTR-----MRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPAA-------DPALVVDYGNGHTTAALVDE 246 (342)
T ss_pred CchhHHH-----HHHHHHHHHhcCce-EEEEcchhHhhhhcccCccc-------CceEEEEccCCceEEEEecC
Confidence 6666654 44444333 433 34666666766655543332 25899999999998888753
No 245
>KOG0994|consensus
Probab=33.84 E-value=1.1e+03 Score=32.00 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHH
Q psy18164 925 NQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKI 973 (1212)
Q Consensus 925 ~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l 973 (1212)
.....-+.+.+++...|+.+|-.+|+.|.++ ...+++.+++.+.+
T Consensus 1457 ~~a~as~~q~~~s~~el~~Li~~v~~Flt~~----~adp~si~~vA~~v 1501 (1758)
T KOG0994|consen 1457 EQANASRSQMEESNRELRNLIQQVRDFLTQP----DADPDSIEEVAEEV 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHH
Confidence 3344445556667777888899999998643 44555555554443
No 246
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=33.77 E-value=34 Score=35.07 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.9
Q ss_pred EEEEEcCCcceEEEEEE
Q psy18164 38 VMSVDLGSEWMKVAIVS 54 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~ 54 (1212)
|+|||.|+++++.|+..
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999985
No 247
>PLN02596 hexokinase-like
Probab=33.63 E-value=4.3e+02 Score=32.57 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHcCCc--eEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 184 NQIERQSMLKAGELAGLK--VLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~--~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
...-.+.+.+|+..-|++ ++.++|+.++..++..+.+. ...+-+=+|-||=-+.+-+++
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~--------~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK--------DTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC--------CeEEEEEEecccceEEEEEcc
Confidence 455566788888777775 78899999999887665432 245555688886555544444
No 248
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=33.27 E-value=33 Score=42.51 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=17.1
Q ss_pred EEEEEcCCcceEEEEEECC
Q psy18164 38 VMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g 56 (1212)
+||||+|||++++++++.+
T Consensus 2 ~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred EEEEeccccceEEEEEcCC
Confidence 6899999999999999754
No 249
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=33.18 E-value=1.2e+02 Score=36.91 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=23.6
Q ss_pred eEEEecchhHHHHHhh-----hhcccCC--CCCCCeEEEEEecCCceEEEEE
Q psy18164 202 VLQLMNDYTAVALNYG-----IFKRKDF--NETNPVHVMFYDMGAWSTTVSI 246 (1212)
Q Consensus 202 ~~~li~EP~AAal~y~-----~~~~~~~--~~~~~~~vlV~D~GggT~Dvsv 246 (1212)
.+++|+-..=+.++|. +.+-... ......++-++||||+++.++.
T Consensus 129 ~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf 180 (434)
T PF01150_consen 129 WVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAF 180 (434)
T ss_dssp TCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEE
T ss_pred ceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeee
Confidence 3567776655555443 3221110 0002468999999999999983
No 250
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=32.97 E-value=30 Score=34.35 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.9
Q ss_pred EEEEcCCcceEEEEEECC
Q psy18164 39 MSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g 56 (1212)
+|||||+..+++|+.+..
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 599999999999988764
No 251
>PLN02295 glycerol kinase
Probab=32.42 E-value=35 Score=42.37 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=17.0
Q ss_pred EEEEEcCCcceEEEEEECC
Q psy18164 38 VMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g 56 (1212)
++|||+|||++++++++..
T Consensus 2 vlgID~GTts~Ka~l~d~~ 20 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRD 20 (512)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 6899999999999999754
No 252
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=32.24 E-value=4.6e+02 Score=29.81 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHHH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ 364 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v~ 364 (1212)
++|||+|.++++++++...
T Consensus 2 ~lgidig~t~i~~~l~d~~------------------------------------------------------------- 20 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK------------------------------------------------------------- 20 (303)
T ss_pred eEEEEeCCCcEEEEEECCC-------------------------------------------------------------
Q ss_pred hhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCC-------------
Q psy18164 365 LFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFN------------- 431 (1212)
Q Consensus 365 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~------------- 431 (1212)
-..+....-.....++++++..+...+++..... ..+..+.|++|...+
T Consensus 21 ----------------g~i~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~~~~~igia~pG~vd~~~g~~~~~~~~~ 82 (303)
T PRK13310 21 ----------------LELQWEERVPTPRDSYDAFLDAVCELVAEADQRF--GCKGSVGIGIPGMPETEDGTLYAANVPA 82 (303)
T ss_pred ----------------CcEEEEEEecCCCcCHHHHHHHHHHHHHHHHhhc--CCcceEEEeCCCcccCCCCEEeccCccc
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCC
Q psy18164 432 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAW 487 (1212)
Q Consensus 432 ~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Ggg 487 (1212)
......-..-.+..|+++ .+-|+..|+|++-.++.... . ..+++++.+|.|
T Consensus 83 w~~~~l~~~l~~~~~~pV-~ieNDa~aaalaE~~~g~~~---~-~~~~~~l~~gtG 133 (303)
T PRK13310 83 ASGKPLRADLSARLGRDV-RLDNDANCFALSEAWDDEFT---Q-YPLVMGLILGTG 133 (303)
T ss_pred ccCCcHHHHHHHHHCCCe-EEeccHhHHHHHHhhhcccc---C-CCcEEEEEecCc
No 253
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=32.24 E-value=1.2e+02 Score=33.71 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=46.2
Q ss_pred CCccccEEE--ccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEE
Q psy18164 169 GQVINEAVI--IVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246 (1212)
Q Consensus 169 ~~~~~~~Vi--tVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 246 (1212)
+..+...+. .+|.+|+.- +++++++..+|.+. -+++--.||.+........ .....++++|+|=|+|=+.+
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v----~~~~~~~~vniGN~HTlaa~ 183 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEV----SSREGIIVVNIGNGHTLAAL 183 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChhh----hccCCeEEEEeCCccEEEEE
Confidence 445566777 899987643 56777777777766 3455555554444332222 12346999999999997777
Q ss_pred E
Q psy18164 247 V 247 (1212)
Q Consensus 247 v 247 (1212)
+
T Consensus 184 v 184 (254)
T PF08735_consen 184 V 184 (254)
T ss_pred E
Confidence 7
No 254
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=32.04 E-value=51 Score=35.55 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCceEEEEEEEEEeec
Q psy18164 228 NPVHVMFYDMGAWSTTVSIVSYQVVK 253 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv~~~~~~ 253 (1212)
+.+.+|++|+||.++-|++|++....
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~ 86 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNG 86 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCC
Confidence 35689999999999999999998886
No 255
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.87 E-value=67 Score=31.42 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=18.5
Q ss_pred HHHhhhhcCCCCCHHHHHHHH
Q psy18164 976 ITNWLEEDGWNAEADVLENKL 996 (1212)
Q Consensus 976 ~~~WL~edg~~a~~~~~~~Kl 996 (1212)
.++||++|+...|.+.|+++.
T Consensus 91 nE~WleEDe~~iTpE~fk~Rm 111 (156)
T COG4296 91 NEDWLEEDEQPITPESFKERM 111 (156)
T ss_pred hhhhhhccCCccCHHHHHHHh
Confidence 578999999999999998774
No 256
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=31.70 E-value=40 Score=42.11 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=16.3
Q ss_pred EEEEEcCCcceEEEEEE
Q psy18164 38 VMSVDLGSEWMKVAIVS 54 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~ 54 (1212)
++|||+|||.+++++++
T Consensus 3 ~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVD 19 (536)
T ss_pred EEEEecCCCceEEEEEE
Confidence 68999999999999999
No 257
>KOG0964|consensus
Probab=31.33 E-value=1.4e+03 Score=30.41 Aligned_cols=37 Identities=32% Similarity=0.553 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q psy18164 963 PNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINS 1001 (1212)
Q Consensus 963 ~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~ 1001 (1212)
.++-+.....++..++-+.+ -.+...+++.+|.-|+.
T Consensus 250 ~e~s~~~~~~~~~~~d~~~~--~~~~i~ele~~l~~l~~ 286 (1200)
T KOG0964|consen 250 PEESEQYIDALDKVEDESED--LKCEIKELENKLTNLRE 286 (1200)
T ss_pred chhhhhHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHH
Confidence 33444444444444444432 22334444444444444
No 258
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=31.19 E-value=1.1e+03 Score=29.26 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=38.2
Q ss_pred ccEEEEEcCCcCCHHHHHHHHHHh---CCcccCCC---CchhHHHhhHHHHHHhhc
Q psy18164 629 ISQVILVGAGTRVPKVQEKITKVV---GVELSKNL---NTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 629 i~~ViLvGGssriP~Vq~~l~~~f---g~~i~~~~---n~deaVA~GAa~~aa~ls 678 (1212)
+..|+|.||-..-.++++.|.+.+ |.++..+. -.|.+++.|++.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 568999999999999999999665 43444333 568999999987665444
No 259
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=31.06 E-value=3.4e+02 Score=34.25 Aligned_cols=110 Identities=11% Similarity=0.239 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHhhhhhhccccch
Q psy18164 988 EADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMV 1067 (1212)
Q Consensus 988 ~~~~~~~Kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~ 1067 (1212)
-+..=.+++++|+.+++.|.. .....+|...+..|.++.....+... ..+.. .+
T Consensus 21 VkSaKdKr~del~~~i~~i~n-~~ki~Dw~~i~~eFd~L~k~~~K~~~----~~~~~-------~~-------------- 74 (595)
T PF05470_consen 21 VKSAKDKRFDELEEIIKQIRN-AMKINDWSSILTEFDKLNKQLEKSKK----IQQNE-------GI-------------- 74 (595)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHhh----hhhcC-------CC--------------
Confidence 344556789999999999887 56777888877777776554443222 11111 11
Q ss_pred hhhcccccccccccc-chhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHHHHHHHHHhcc
Q psy18164 1068 WFRVCWGFFFLLFKQ-DKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 1138 (1212)
Q Consensus 1068 ~~~~~~~~~~~~~~~-~~~i~~~~~~~~~W~~~~~~~q~~l~~~~dp~~~~~~i~~k~~~l~~~~~~~~~k~ 1138 (1212)
+..|-. ...+++.+++ .|.+ .+..+++.++..- ....+..|+++..+.+...+++-
T Consensus 75 ---------P~~yir~l~~Led~v~e--~~~~--ke~~Kkms~~nak--aln~lkQklkK~~k~~e~~i~~y 131 (595)
T PF05470_consen 75 ---------PRFYIRALVELEDFVNE--TWAD--KEAKKKMSKNNAK--ALNTLKQKLKKYNKEYEAQIAKY 131 (595)
T ss_pred ---------ChhHHHHHHHHHHHHHH--HHhh--hHhhhhcCHHhHH--HHHHHHHHHHhhhhhHHHHHHHH
Confidence 111111 2334666664 4532 3344555555544 55667888888888777777654
No 260
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=30.92 E-value=40 Score=34.91 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=18.0
Q ss_pred ceEEEEEcCCcceEEEEEEC
Q psy18164 36 IAVMSVDLGSEWMKVAIVSP 55 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~ 55 (1212)
|.|+|||-|+++|++|+...
T Consensus 2 m~iLGIDPgl~~tG~avi~~ 21 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEV 21 (164)
T ss_pred CEEEEEccccCceeEEEEEe
Confidence 67999999999999999864
No 261
>PLN02914 hexokinase
Probab=30.87 E-value=2.7e+02 Score=34.22 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=30.9
Q ss_pred cCceEEEEecCceeEEEEEEeCC-CCeEEecCCCCCccceEEEEEecCcEeecHHHH
Q psy18164 281 YGIAVMSVDLGSEWMKVAIVSPG-VPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 336 (1212)
Q Consensus 281 ~~~~vvGID~Gtt~s~va~~~~g-~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~ 336 (1212)
.....++||||.||.+|+.+.=+ ..-.++.....+..+|--+-....+-+|+.-|.
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~ 149 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIAS 149 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHH
Confidence 44568999999999999999532 111122222233344443332233445555553
No 262
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=30.46 E-value=40 Score=41.67 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=17.0
Q ss_pred EEEEEcCCcceEEEEEECC
Q psy18164 38 VMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g 56 (1212)
+||||+|||++++++++..
T Consensus 3 ~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 6899999999999999744
No 263
>PRK00047 glpK glycerol kinase; Provisional
Probab=30.37 E-value=40 Score=41.72 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=17.5
Q ss_pred eEEEEEcCCcceEEEEEECC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g 56 (1212)
-+||||+|||++++++++..
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 47999999999999999754
No 264
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=30.32 E-value=40 Score=41.72 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=18.6
Q ss_pred ceEEEEecCceeEEEEEEeCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g 303 (1212)
..++|||+||+++|+.++...
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCC
Confidence 468999999999999999765
No 265
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=30.11 E-value=9.1e+02 Score=27.90 Aligned_cols=188 Identities=19% Similarity=0.174 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhcccc--------------ccccCCCCHhHHHHHHHHH
Q psy18164 908 TLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL--------------EEYSSVAAPNESKTIVDKI 973 (1212)
Q Consensus 908 ~ls~eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~--------------~~~~~~~t~eere~l~~~l 973 (1212)
.++-+++....+.+..|.-.=-+.....+..+.+|+|--+++..|.+ +--.-.+.-.+...|...+
T Consensus 82 ~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l 161 (335)
T PF08429_consen 82 KLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRL 161 (335)
T ss_pred cCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHH
Confidence 35566666666655544333233333444444555555554444421 0011233446777788888
Q ss_pred HHHHHhhhhc-----CC-CCCHHHHHHHHHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccCcCCc
Q psy18164 974 DEITNWLEED-----GW-NAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNET 1047 (1212)
Q Consensus 974 ~e~~~WL~ed-----g~-~a~~~~~~~Kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~ 1047 (1212)
... .|+..- +. ..+.+++.+=+++-..+.-| .--..+..|+.++..+...-..++..-. .
T Consensus 162 ~~~-~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~---------~~~~~~~~L~~~l~~~~~We~ka~~~L~-~--- 227 (335)
T PF08429_consen 162 EQL-EWLEEAREILSDPDRLTLDELRELLDEGERLGIP---------SDEKLMAELQELLKQGEEWEEKAKELLS-R--- 227 (335)
T ss_pred HHH-HHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCc---------cchHHHHHHHHHHHHHHHHHHHHHHHHh-c---
Confidence 665 599741 11 13444444443333333221 2223556677777777777776655432 1
Q ss_pred ccCCCCCHhhhhhhccccchhhhccccccccccc-cchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccHHHHHHHH
Q psy18164 1048 EDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFK-QDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKI 1124 (1212)
Q Consensus 1048 ~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~W~~~~~~~q~~l~~~~dp~~~~~~i~~k~ 1124 (1212)
+..+-.+++.+ ...... ++... .+..|.+.+.+...|......-... ..++..++.++..-+
T Consensus 228 ---~~~~l~~Le~l--------~~~~~~-ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~---~~~~~p~~~el~~l~ 290 (335)
T PF08429_consen 228 ---PRVSLEQLEAL--------LEEAEN-IPVSLPSLDKLKDALQKAKEWLRQIEELLEQ---NGSKRPTLDELEELV 290 (335)
T ss_pred ---CCCCHHHHHHH--------HHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCcHHHHHHHH
Confidence 45566666655 122222 23333 3678899999999998877666322 333433555555443
No 266
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=29.87 E-value=1.3e+02 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=25.9
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCe
Q psy18164 422 AVIIVPGYFNQIERQSMLKAGELAGLKV 449 (1212)
Q Consensus 422 ~VItVP~~f~~~qR~al~~Aa~~AGl~~ 449 (1212)
..+..|+.++..||..+.+.|+..||..
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 5789999999999999999999999965
No 267
>KOG0996|consensus
Probab=29.66 E-value=6.9e+02 Score=33.66 Aligned_cols=97 Identities=15% Similarity=0.297 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhH-hHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhc--CCCC
Q psy18164 911 EKQVEKSLSKLDSL-NQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEED--GWNA 987 (1212)
Q Consensus 911 ~eel~~~~~~l~~l-~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~ed--g~~a 987 (1212)
.+.+.....++.++ ...++.++++.++.|.+|.+=-....- ..+.+.|...+...+.-|++. ..+-
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~-----------~~ei~~L~~~~~~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKC-----------QTEIEQLEELLEKEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555543 556788888888888888764333321 233344444444444444331 2233
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhhccchH
Q psy18164 988 EADVLENKLNEINSLVVPIWERHREHQERPE 1018 (1212)
Q Consensus 988 ~~~~~~~Kl~eL~~~~~pi~~R~~e~~~rp~ 1018 (1212)
.++-+.+++..+++-..|...++.++..+-+
T Consensus 473 ~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPLLKQVNEARSELD 503 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888877777765543
No 268
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=29.45 E-value=9.3e+02 Score=27.82 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=80.9
Q ss_pred HHHhccccc-cccCCCCHhHHHHHHHHHHHHHHhhhhc-----CCCCCHHHHHHHHHHHHHhhHHHHHHHHhhccchHHH
Q psy18164 947 DAKSKLELE-EYSSVAAPNESKTIVDKIDEITNWLEED-----GWNAEADVLENKLNEINSLVVPIWERHREHQERPEAL 1020 (1212)
Q Consensus 947 ~~r~kL~~~-~~~~~~t~eere~l~~~l~e~~~WL~ed-----g~~a~~~~~~~Kl~eL~~~~~pi~~R~~e~~~rp~a~ 1020 (1212)
++|..|+.+ .+......+....|...+...+.|-+.= ....+ +.+|.++.+. ......-+..+
T Consensus 184 ~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~-------l~~Le~l~~~----~~~ipv~~~~~ 252 (335)
T PF08429_consen 184 ELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLSRPRVS-------LEQLEALLEE----AENIPVSLPSL 252 (335)
T ss_pred HHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHH----HhcCCCchHHH
Confidence 445555432 2323455678888999999999999741 12233 3333333333 23345556778
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHhhhhhhccccchhhhccccccccccccchhhHHHHHHHHHHHHHH
Q psy18164 1021 KSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKS 1100 (1212)
Q Consensus 1021 ~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~W~~~~ 1100 (1212)
..++.++.+++.....++.+.+... ....+-.++..+ ...-......+.....++..+...+.|.+..
T Consensus 253 ~~L~~~l~kak~w~~~i~~ll~~~~----~~~p~~~el~~l--------~~~~~~L~~~~~~~~~Le~~~~~~~~W~~~~ 320 (335)
T PF08429_consen 253 DKLKDALQKAKEWLRQIEELLEQNG----SKRPTLDELEEL--------VAESEELPVKLEELSDLEKQLKRAEDWMEKA 320 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC----CCCCcHHHHHHH--------HHHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888877633210 123344555555 1111111222222567888999999999887
Q ss_pred HHHHhhc
Q psy18164 1101 EKEQNQL 1107 (1212)
Q Consensus 1101 ~~~q~~l 1107 (1212)
.....+.
T Consensus 321 ~k~F~k~ 327 (335)
T PF08429_consen 321 KKLFLKK 327 (335)
T ss_pred HHHhccc
Confidence 6655543
No 269
>KOG1386|consensus
Probab=28.67 E-value=3.7e+02 Score=32.67 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=81.5
Q ss_pred EEEecCceeEEEEEEe----CCCC-eEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCC
Q psy18164 286 MSVDLGSEWMKVAIVS----PGVP-MEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 360 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~----~g~~-~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~ 360 (1212)
|-||=|++.|.+-++. .|.| ..++.......++ ....+....+|+....+++.||.
T Consensus 12 iviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~--------------~PGiSsfa~nP~~a~~~l~pLle----- 72 (501)
T KOG1386|consen 12 IVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKL--------------GPGISSFADNPEGASVYLTPLLE----- 72 (501)
T ss_pred EEEecCCCCceEEEEeecccCCCcccCccchhhccccc--------------CCChhhhccChhhhHHHHHHHHH-----
Confidence 5789999999998873 3433 2222211111111 11223334578877778887763
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHH
Q psy18164 361 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 440 (1212)
Q Consensus 361 ~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~ 440 (1212)
..+.+.|....... .+.+-..-|..+-+++.-..+|..+........+-.+.+.
T Consensus 73 ----fA~~~IPk~~h~~T----pl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~------------------ 126 (501)
T KOG1386|consen 73 ----FAKEHIPKEKHKET----PLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDE------------------ 126 (501)
T ss_pred ----HHHhhCCHhhcCCC----CeEEEecccceecCcccHHHHHHHHHHhcccccCCccccc------------------
Confidence 33444554322211 1333333346666777777777777765443333222221
Q ss_pred HHHHcCCCeeeeechhHH-----HHHhhcccccccCC--CCCCeEEEEEEcCCCceeEEEEE
Q psy18164 441 AGELAGLKVLQLMNDYTA-----VALNYGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 441 Aa~~AGl~~~~li~EptA-----aAl~y~~~~~~~~~--~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
+ .++|+-..- .+++|...+-...+ .....++-++||||.+++|+.+-
T Consensus 127 -----~---a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~ 180 (501)
T KOG1386|consen 127 -----W---ARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEP 180 (501)
T ss_pred -----c---cEEeecccceehhhHHHHHHHHhccccCcccCCcceeeeEecCCceeEEEEec
Confidence 1 133322111 24555544322211 10257899999999999999775
No 270
>PLN02854 3-ketoacyl-CoA synthase
Probab=28.59 E-value=1.3e+02 Score=37.11 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEE-EcCCcCCHHHHHHHHHHhCC
Q psy18164 610 RVGYPVEQALKSSAVPMDVISQVIL-VGAGTRVPKVQEKITKVVGV 654 (1212)
Q Consensus 610 ~i~~~i~~~L~~a~~~~~~i~~ViL-vGGssriP~Vq~~l~~~fg~ 654 (1212)
-+...++++|+++|+++++||.|++ +.+....|.+-..|.+.+|.
T Consensus 191 v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGl 236 (521)
T PLN02854 191 VMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKL 236 (521)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCC
Confidence 3556778899999999999999987 33444589999999999993
No 271
>KOG1029|consensus
Probab=28.16 E-value=8.4e+02 Score=31.26 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=5.1
Q ss_pred HHHHHhhHHH
Q psy18164 934 KEKALNSLES 943 (1212)
Q Consensus 934 ~~eakN~LEs 943 (1212)
|+.||.+||.
T Consensus 398 rEaar~ElEk 407 (1118)
T KOG1029|consen 398 REAAREELEK 407 (1118)
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 272
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=28.06 E-value=1e+02 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.2
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCCe
Q psy18164 421 EAVIIVPGYFNQIERQSMLKAGELAGLKV 449 (1212)
Q Consensus 421 ~~VItVP~~f~~~qR~al~~Aa~~AGl~~ 449 (1212)
.-.++.|+.+++.||+.+...|...||..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 45677899999999999999999999976
No 273
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=27.58 E-value=1.5e+02 Score=30.71 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=53.6
Q ss_pred eHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHH----------------HHHHHHHHHHcCCCeeeeechhHH
Q psy18164 395 HVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE----------------RQSMLKAGELAGLKVLQLMNDYTA 458 (1212)
Q Consensus 395 ~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~q----------------R~al~~Aa~~AGl~~~~li~EptA 458 (1212)
++++++..+.+.+.+....... . .+.|++|..++... .+.|.+ ..++++ .+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~~-~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~pv-~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYGR-S--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVPV-IIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTC-E--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSEE-EEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccc-c--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceEE-EEecCCCc
Confidence 4677777777777766655432 1 66666666554332 223333 236644 89999999
Q ss_pred HHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEE
Q psy18164 459 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 494 (1212)
Q Consensus 459 aAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 494 (1212)
+|++........ . ..+++++-+|.| .-++++
T Consensus 104 ~a~ae~~~~~~~---~-~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAAK---D-CDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTTT---T-TSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCccC---C-cceEEEEEeecC-CCccee
Confidence 998876643321 1 467888888876 455555
No 274
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.31 E-value=1.2e+02 Score=25.33 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCe
Q psy18164 406 KAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 449 (1212)
Q Consensus 406 ~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~ 449 (1212)
.+++..+.+.... .-.++.|+ ++..+|+.+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444455554433 44679999 89999999999999999865
No 275
>PRK04123 ribulokinase; Provisional
Probab=26.79 E-value=54 Score=41.07 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=16.3
Q ss_pred EEEEEcCCcceEEEEEE
Q psy18164 38 VMSVDLGSEWMKVAIVS 54 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~ 54 (1212)
++|||+|||++++++++
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 78999999999999998
No 276
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.27 E-value=1.3e+02 Score=31.71 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCC-CCHHHHHHHHHHHHHhhHHHHHH
Q psy18164 942 ESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWN-AEADVLENKLNEINSLVVPIWER 1009 (1212)
Q Consensus 942 Es~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~-a~~~~~~~Kl~eL~~~~~pi~~R 1009 (1212)
++|+-+.|..|. ..+++||+++ ++.++++++|.+++ .+-++..+.|..-+.+++.+..-
T Consensus 4 ~efL~~L~~~L~------~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 4 NEFLNELEKYLK------KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHH------cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 345555555553 3566766665 66777788764433 45667777777777777766643
No 277
>KOG0996|consensus
Probab=25.46 E-value=1.9e+03 Score=29.97 Aligned_cols=10 Identities=10% Similarity=-0.107 Sum_probs=8.3
Q ss_pred EEEecCCceE
Q psy18164 233 MFYDMGAWST 242 (1212)
Q Consensus 233 lV~D~GggT~ 242 (1212)
.|+|++|||+
T Consensus 168 ~iiD~~~~~~ 177 (1293)
T KOG0996|consen 168 KIIDKPGGTY 177 (1293)
T ss_pred eeeccCCCce
Confidence 6889999985
No 278
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=24.66 E-value=82 Score=32.08 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=0.0
Q ss_pred EEEEEcCCcceEEEEE-ECCCceEEe
Q psy18164 38 VMSVDLGSEWMKVAIV-SPGVPMEIA 62 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~-~~g~~~~ii 62 (1212)
|+|||-|+++++.|+. ..++.+.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
No 279
>PLN02192 3-ketoacyl-CoA synthase
Probab=24.13 E-value=1.9e+02 Score=35.68 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCCc---ccCCCCchhH
Q psy18164 601 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGVE---LSKNLNTDEA 665 (1212)
Q Consensus 601 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGs-sriP~Vq~~l~~~fg~~---i~~~~n~dea 665 (1212)
++..++...-+...++++|+++|++++|||.|++.... ...|.+-.+|.+.+|.. ...+++..-|
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr~~i~afdLsgmGC 238 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGC 238 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCCCCceEEEcccchh
Confidence 33334444456677889999999999999988765322 35899999999999933 2344554333
No 280
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=23.99 E-value=1.8e+02 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=26.3
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcCCceE
Q psy18164 175 AVIIVPGYFNQIERQSMLKAGELAGLKVL 203 (1212)
Q Consensus 175 ~VitVPa~f~~~qr~~l~~Aa~~AGl~~~ 203 (1212)
..+..|+.++..||..+.+.|+..||...
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 56899999999999999999999999753
No 281
>PRK13321 pantothenate kinase; Reviewed
Probab=23.88 E-value=66 Score=35.92 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=17.3
Q ss_pred EEEEecCceeEEEEEEeCC
Q psy18164 285 VMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g 303 (1212)
+++||+|+|++++|++..+
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 5899999999999999855
No 282
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=23.84 E-value=2.7e+02 Score=29.83 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=9.7
Q ss_pred HHhhHHHHHHHHHhcccc
Q psy18164 937 ALNSLESLLFDAKSKLEL 954 (1212)
Q Consensus 937 akN~LEs~iy~~r~kL~~ 954 (1212)
+++.|- ++|.+++.|.+
T Consensus 8 ~~d~~~-~l~~v~~~iK~ 24 (205)
T PF12238_consen 8 SKDALK-ALKKVLDLIKE 24 (205)
T ss_pred hHHHHH-HHHHHHHHHcc
Confidence 344443 34778887753
No 283
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=23.56 E-value=3.5e+02 Score=27.75 Aligned_cols=80 Identities=10% Similarity=0.173 Sum_probs=48.1
Q ss_pred ccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHH
Q psy18164 957 YSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQ--ERPEALKSLNNALNVSVTFY 1034 (1212)
Q Consensus 957 ~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R~~e~~--~rp~a~~~l~~~l~~~~~~l 1034 (1212)
+-..+|++|+..+.+.+..+..|= .++.-...+++|.-.|......+..-+...- -.|++.+-+++++..++...
T Consensus 17 ~~~~Lt~eeK~~lkev~~~~~~~~---~~de~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~peak~Fv~~li~~~~~l~ 93 (154)
T PF05823_consen 17 FYKNLTPEEKAELKEVAKNYAKFK---NEDEMIAALKEKSPSLYEKAEKLRDKLKKKIDKLSPEAKAFVKELIAKARSLY 93 (154)
T ss_dssp HHHH--TTTHHHHHHHHTT----------TTHHHHHHHH-HHHHHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHccccC---CHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 445678899999988887766552 3444566777777777666665554444332 36999998999999888876
Q ss_pred HHhhc
Q psy18164 1035 NSIKN 1039 (1212)
Q Consensus 1035 ~~~~~ 1039 (1212)
..+.+
T Consensus 94 ~~~~~ 98 (154)
T PF05823_consen 94 AQYSA 98 (154)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 66543
No 284
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.21 E-value=1.1e+02 Score=36.32 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy18164 605 EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 605 ~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg 653 (1212)
+...+.+...|+++|++++++.+||+.+++.+++.++- ...+++.||
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~--d~~~~~llg 313 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN--QLIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH--HHHHHHhcc
Confidence 45567778899999999999999999999999998743 223444466
No 285
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=22.76 E-value=75 Score=37.03 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.9
Q ss_pred hcccCceEEEEEcCCcceEEEEEECCC
Q psy18164 31 EHSYGIAVMSVDLGSEWMKVAIVSPGV 57 (1212)
Q Consensus 31 ~~~~~~~vvGIDfGTt~s~va~~~~g~ 57 (1212)
.....|-++|||.|+|.|.+.+..+++
T Consensus 130 ~~~~~~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 130 REYQGMYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred hhhcCcEEEEEecCCcceeEEEEeCCC
Confidence 344468899999999999999999885
No 286
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.47 E-value=1.4e+02 Score=25.35 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=26.4
Q ss_pred cEEEccCCCCCHHHHHHHHHHHHHcCCceE
Q psy18164 174 EAVIIVPGYFNQIERQSMLKAGELAGLKVL 203 (1212)
Q Consensus 174 ~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~ 203 (1212)
.-.+..|+.++..+|+.+...|...|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 456778999999999999999999999754
No 287
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=22.42 E-value=1.4e+02 Score=35.91 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=13.5
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy18164 1169 KPSETEQSKPEEQPAGDQEPLTPKPSPSPV 1198 (1212)
Q Consensus 1169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1198 (1212)
.+.++|++...++.-.++.+..|.++.++.
T Consensus 399 s~~e~e~s~~~~pq~~~~~a~~~~~~~~~~ 428 (429)
T PRK00247 399 TPSENEESKGSPPQVEATTTAEPNREPSQE 428 (429)
T ss_pred ccccccccCCCCCCCccccccCCCCCCCCC
Confidence 344444444333333444455555555443
No 288
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=22.29 E-value=1.6e+03 Score=28.00 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=53.4
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHH-HHHHHHhCCcccCCCC-chhHHHhhHH
Q psy18164 594 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQ-EKITKVVGVELSKNLN-TDEAAALGAV 671 (1212)
Q Consensus 594 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq-~~l~~~fg~~i~~~~n-~deaVA~GAa 671 (1212)
...-.+|-..++..++++.--+-+-+.+... .+.+.+.||...--... ++|.+-++.++-.... .|.-.|.|||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHH
Confidence 3344556666677777776665555554321 56799999987554444 6777777766654444 4777999999
Q ss_pred HHHHhhc
Q psy18164 672 YKAADLS 678 (1212)
Q Consensus 672 ~~aa~ls 678 (1212)
+++...-
T Consensus 331 l~~~~~~ 337 (555)
T COG2192 331 LAVKREL 337 (555)
T ss_pred HHHHHHh
Confidence 9987654
No 289
>PLN03170 chalcone synthase; Provisional
Probab=22.18 E-value=3.8e+02 Score=32.18 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCc-CCHHHHHHHHHHhCC
Q psy18164 606 DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT-RVPKVQEKITKVVGV 654 (1212)
Q Consensus 606 ~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGss-riP~Vq~~l~~~fg~ 654 (1212)
...+=..+..+++|+++|++.++|+.|+++-.+. .+|.+.-.|.+.+|.
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl 154 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGL 154 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCc
Confidence 3444556678999999999999999998877544 699999999999993
No 290
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.16 E-value=1.7e+02 Score=24.54 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCce
Q psy18164 159 KAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 202 (1212)
Q Consensus 159 ~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~ 202 (1212)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...|+..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3445555555433 34679999 89999999999999999864
No 291
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=21.97 E-value=66 Score=37.97 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=17.6
Q ss_pred EEEEecCceeEEEEEEeCC
Q psy18164 285 VMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g 303 (1212)
++|||.|++.+++.++..+
T Consensus 4 ~lGIDIGSTsTKaVVmd~~ 22 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDDK 22 (432)
T ss_pred EEEEEcCchhEEEEEEcCC
Confidence 7899999999999999876
No 292
>PRK13318 pantothenate kinase; Reviewed
Probab=21.93 E-value=74 Score=35.59 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=17.3
Q ss_pred EEEEecCceeEEEEEEeCC
Q psy18164 285 VMSVDLGSEWMKVAIVSPG 303 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g 303 (1212)
+++||+|+|++++|++..|
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 6899999999999999855
No 293
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=21.88 E-value=1.3e+03 Score=29.29 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcC
Q psy18164 928 EHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDG 984 (1212)
Q Consensus 928 D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg 984 (1212)
+.-+.+-......||.|.+.+.+.++ .+ .+..+ .......+|+.+..
T Consensus 325 ~~ik~~~~~~~k~~~~~~~~~~~~~~--~~----~d~~~----~~~~~~~~~~~~~~ 371 (684)
T PHA02566 325 EAIKQEDQTSIKNLEKFAASVDELLE--DY----KDIVF----ENSLDALEWINDLN 371 (684)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHH--Hh----hhhhh----hhhhHHHHHHHhhc
Confidence 34444556678889999999888773 22 12222 22667889998753
No 294
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=21.64 E-value=1.2e+03 Score=26.55 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh
Q psy18164 609 DRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV 652 (1212)
Q Consensus 609 ~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f 652 (1212)
+-+.+.++++++.. .++.|+|.||-..-.++++.|.+.+
T Consensus 244 ~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 244 DHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33444555555543 4678999999999999999998877
No 295
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=21.57 E-value=1.6e+03 Score=27.78 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=53.2
Q ss_pred CCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q psy18164 960 VAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSI 1037 (1212)
Q Consensus 960 ~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~l~~~ 1037 (1212)
..++.++..++..-.++. ....-..++..++.++...+..+-.+.++..++..-...|++++.-.++++...
T Consensus 76 ~l~~~e~a~lr~~~r~~~------~~~~iP~elv~~~~~~~s~a~~~W~~AR~~nDf~~F~P~Le~iv~l~re~a~~~ 147 (494)
T PF02074_consen 76 DLDEWERANLREMRRDYE------RATKIPEELVEELARLTSEAEQAWEEARENNDFSAFAPYLEKIVELQREIAEYL 147 (494)
T ss_dssp STTHHHHHHHHHHHHHHH------HHHCS-HHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666655544322 123455677889999999999999999999999999999999999998877664
No 296
>COG5373 Predicted membrane protein [Function unknown]
Probab=21.37 E-value=3.4e+02 Score=34.90 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q psy18164 1177 KPEEQPAGDQEPLTPKPSPSP 1197 (1212)
Q Consensus 1177 ~~~~~~~~~~~~~~~~~~~~~ 1197 (1212)
++-|.+++.|++.+|.|+.-+
T Consensus 87 ~e~e~~~a~~psa~~~~~~~~ 107 (931)
T COG5373 87 QEGEAPAAEQPSAVPAPSAAP 107 (931)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
Confidence 333444455666666655443
No 297
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=21.16 E-value=6.1e+02 Score=25.81 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=74.0
Q ss_pred EEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHH
Q psy18164 478 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRA 557 (1212)
Q Consensus 478 ~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra 557 (1212)
+||-+|-|-.+|=.++++.. .+.++++.++.-..-.+... +
T Consensus 1 rILGIDPGl~~~G~av~~~~------------~~~~~~~~~g~i~t~~~~~~-------------------------~-- 41 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQE------------GRKLIYLASGVIRTSSDAPL-------------------------P-- 41 (154)
T ss_pred CEEEEccCcCceEEEEEEee------------CCeEEEEEeeEEECCCCCCH-------------------------H--
Confidence 37889999999999999865 23566666554221111111 1
Q ss_pred HHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCccEE
Q psy18164 558 VAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP-----MDVISQV 632 (1212)
Q Consensus 558 ~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~-----~~~i~~V 632 (1212)
.||....+.+...+....-..+.||.++=... .+..+ .+..+...+..++...++. +..+...
T Consensus 42 -~rl~~I~~~l~~~i~~~~Pd~vaiE~~~~~~n---------~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~ 109 (154)
T cd00529 42 -SRLKTIYDGLNEVIDQFQPDVVAIERVFFAKN---------PDSAL--KLGQARGALILALANRNLPVFEYTPNQVKKA 109 (154)
T ss_pred -HHHHHHHHHHHHHHHHhCCCEEEEEEhhcccC---------hHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEEE
Confidence 22222333333333322223566776432111 11111 2344666777777776654 4445444
Q ss_pred EEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 633 ILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 633 iLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+.-=|...=--|+.++++.++.+.. ..+.|+|=|++.|+..
T Consensus 110 ~tG~G~A~KeqV~~mv~~~l~~~~~-~~~~d~aDAlaiA~~~ 150 (154)
T cd00529 110 VTGYGKADKDQVQHMVKRLLNLSEI-PKPDDAADALAVAITH 150 (154)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHH
Confidence 4322444445688999999984332 1233444444444433
No 298
>PRK09557 fructokinase; Reviewed
Probab=20.80 E-value=1.5e+02 Score=33.85 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=28.2
Q ss_pred cCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEE
Q psy18164 445 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 494 (1212)
Q Consensus 445 AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 494 (1212)
.|++ +.+.|+..|+|++-....... . .++++++.+|.| .-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~---~-~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAA---G-KQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccC---C-CCcEEEEEEccc-eEEEEE
Confidence 3776 479999999998754432211 1 467888888855 344444
No 299
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=20.77 E-value=2.1e+02 Score=33.12 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh---CCcccCCC---CchhHHHhhHH
Q psy18164 611 VGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV---GVELSKNL---NTDEAAALGAV 671 (1212)
Q Consensus 611 i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f---g~~i~~~~---n~deaVA~GAa 671 (1212)
+.+.+..+++.. .++.|.|.||...-.++++.|.+.. |.++..+. -.|.+++.|++
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 334444555433 4678999999999999999999887 53333332 45888999886
No 300
>PRK07058 acetate kinase; Provisional
Probab=20.74 E-value=4.7e+02 Score=31.20 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCc-CCHHHHHHHHHHhC
Q psy18164 604 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT-RVPKVQEKITKVVG 653 (1212)
Q Consensus 604 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGss-riP~Vq~~l~~~fg 653 (1212)
++-+..|+.+.|-...... ..+|.|+++||-. ..+.|++.|.+.++
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3445566666665555433 3699999999999 99999999987765
No 301
>PRK13318 pantothenate kinase; Reviewed
Probab=20.72 E-value=89 Score=34.93 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=17.2
Q ss_pred EEEEEcCCcceEEEEEECC
Q psy18164 38 VMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g 56 (1212)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 5899999999999999854
No 302
>KOG0680|consensus
Probab=20.66 E-value=7.1e+02 Score=28.66 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=41.8
Q ss_pred ccEEEccCCC-CCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhh--cccCCCCCCCeEEEEEecCCceEEE
Q psy18164 173 NEAVIIVPGY-FNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF--KRKDFNETNPVHVMFYDMGAWSTTV 244 (1212)
Q Consensus 173 ~~~VitVPa~-f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~--~~~~~~~~~~~~vlV~D~GggT~Dv 244 (1212)
.++|+|=|.. |...|.....--.+..+|.. +..-+.|+..++... ++.+.-...+...+|+|-|.+-+.+
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThI 166 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHI 166 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEE
Confidence 5789999976 56666666665667777764 444444444444311 1111111234589999999987755
No 303
>PRK03918 chromosome segregation protein; Provisional
Probab=20.62 E-value=9.1e+02 Score=32.16 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Q psy18164 960 VAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHR 1011 (1212)
Q Consensus 960 ~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R~~ 1011 (1212)
...+++.+.+...+.+++..+.+- ....+.++.++++|+.-...+.....
T Consensus 655 ~~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~~~~~~ 704 (880)
T PRK03918 655 KYSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKLKEELE 704 (880)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888877777532 12344555555555555444443333
No 304
>PRK13321 pantothenate kinase; Reviewed
Probab=20.21 E-value=87 Score=34.97 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=17.1
Q ss_pred EEEEEcCCcceEEEEEECC
Q psy18164 38 VMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g 56 (1212)
+++||+|.|++.+|+++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 5899999999999999855
No 305
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.08 E-value=1.2e+03 Score=29.85 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhHh-HHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhh
Q psy18164 908 TLNEKQVEKSLSKLDSLN-QIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLE 981 (1212)
Q Consensus 908 ~ls~eel~~~~~~l~~l~-~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~ 981 (1212)
.++..++......+..+. ..-....+..+....+|.-+-.+..+|.. ...+++.+.+.+.+.+++.=+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~-----~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 369 RLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST-----IPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHH
Confidence 356666655444444443 22233444444555666666666776642 2233555556555555555443
No 306
>PLN02669 xylulokinase
Probab=20.03 E-value=83 Score=39.50 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=18.1
Q ss_pred ceEEEEEcCCcceEEEEEECC
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPG 56 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g 56 (1212)
.-+||||+||+.+++++++..
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CeEEEEecccCCeEEEEEcCC
Confidence 347999999999999999754
Done!