RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18164
(1212 letters)
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 532 bits (1374), Expect = e-179
Identities = 211/392 (53%), Positives = 269/392 (68%), Gaps = 6/392 (1%)
Query: 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 345
+ +DLGSEW+KVA+V PGVP EI LN+ESKRKTP+ VAF GER FG DA + RFP
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 346 SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLH 405
Y + DLLGK D P V L++SR P +V DE RGT+ FK +D E Y VEELVAM+L+
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMILN 120
Query: 406 KAREYASVSAGQ-VINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
A++ A A + + + VI VP YF Q +RQ++L A ELAGL VL L+ND TA ALNY
Sbjct: 121 YAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYA 180
Query: 465 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 524
+ +R F P +V+FYDMGA STT ++V + V+ KE+ +T PQ+ VLGVG+DRTL
Sbjct: 181 LDRR--FENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKS--KTVPQIEVLGVGWDRTL 236
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 584
GG E +RL D L K+F E K DV NPRA+AKL KEA R K VLSAN+E IE
Sbjct: 237 GGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIES 296
Query: 585 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKV 644
L D+IDFK +TRAEFE L DLF+R P+++AL+S+ + + I V L+G TRVPKV
Sbjct: 297 LYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKV 356
Query: 645 QEKITKVVG-VELSKNLNTDEAAALGAVYKAA 675
QE++++ VG +L K+LN DEAAA+GA Y AA
Sbjct: 357 QEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
Score = 299 bits (768), Expect = 2e-91
Identities = 117/221 (52%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 98
+ +DLGSEW+KVA+V PGVP EI LN+ESKRKTP+ VAF GER FG DA + RFP
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 99 SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLH 158
Y + DLLGK D P V L++SR P +V DE RGT+ FK +D E Y VEELVAM+L+
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMILN 120
Query: 159 KAREYASVSAGQ-VINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
A++ A A + + + VI VP YF Q +RQ++L A ELAGL VL L+ND TA ALNY
Sbjct: 121 YAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYA 180
Query: 218 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258
+ +R F P +V+FYDMGA STT ++V + V+ KE+
Sbjct: 181 LDRR--FENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKS 219
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 354 bits (910), Expect = e-112
Identities = 109/392 (27%), Positives = 188/392 (47%), Gaps = 17/392 (4%)
Query: 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 345
+DLG+ +A+ ++I +N+ S R TP++V F R GE + T N
Sbjct: 1 FGLDLGNNNSVLAVARN-RGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKN 59
Query: 346 SYGYFLDLLGKSIDSPVVQLF-KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
+ ++G P + K + D++ G V + ++ +L AM +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 465 IFKRKD-FNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
IFK E P V F D+G S T SIV+++ Q+ VLG D+
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKK------------GQLKVLGTACDKH 227
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 583
GG + + + + +F K D+ ENP+A ++ A +LK VLSAN +E
Sbjct: 228 FGGRDFDLAITEHFADEFKTKYKI--DIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 285
Query: 584 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 643
+++++D ++R E E L + L +RV PV +AL + + + + V ++G TR+P
Sbjct: 286 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 345
Query: 644 VQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675
+++ I++ G LS LN DEA A GA + A
Sbjct: 346 LKQSISEAFGKPLSTTLNQDEAIAKGAAFICA 377
Score = 187 bits (477), Expect = 4e-52
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 3/222 (1%)
Query: 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 98
+DLG+ +A+ ++I +N+ S R TP++V F R GE + T N
Sbjct: 1 FGLDLGNNNSVLAVARN-RGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKN 59
Query: 99 SYGYFLDLLGKSIDSPVVQLF-KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
+ ++G P + K + D++ G V + ++ +L AM +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 218 IFKRKD-FNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258
IFK E P V F D+G S T SIV+++ + K G
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLG 221
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 317 bits (816), Expect = 3e-98
Identities = 143/398 (35%), Positives = 211/398 (53%), Gaps = 20/398 (5%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 343
+V+ +D G+ VA+ G +++ N+ S R+TP+LV+F + +R GE A+
Sbjct: 1 SVVGIDFGNLNSVVAVARKGG-IDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNF 59
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFK-TNDNE--LYHVEELV 400
N+ F L+G+ D P VQ P+ +V + G + K E ++ E+++
Sbjct: 60 KNTVRNFKRLIGRKFDDPEVQKELKFLPF-KVVELPD-GKVGIKVNYLGEEKVFSPEQVL 117
Query: 401 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 460
AMLL K +E A + + + VI VP YF +R+++L A ++AGL L+LMN+ TA A
Sbjct: 118 AMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATA 177
Query: 461 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
L YGI+K E P +V F D+G ST VSIV++ K ++ VL +
Sbjct: 178 LAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAF----NKG--------KLKVLSTAF 225
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
DR LGG + L + K+F +K DV NP+A +L +LK VLSAN E
Sbjct: 226 DRNLGGRDFDEALFEHFAKEFK--EKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPL 283
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
IE L+++ D + R EFE L L +RV P+E+AL + + + I V +VG TR
Sbjct: 284 NIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTR 343
Query: 641 VPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
+P V+E I KV G ELS LN DEA A G + A LS
Sbjct: 344 IPAVKELIAKVFGKELSTTLNADEAVARGCALQCAMLS 381
Score = 177 bits (451), Expect = 2e-48
Identities = 75/216 (34%), Positives = 119/216 (55%), Gaps = 6/216 (2%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 96
+V+ +D G+ VA+ G +++ N+ S R+TP+LV+F + +R GE A+
Sbjct: 1 SVVGIDFGNLNSVVAVARKGG-IDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNF 59
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFK-TNDNE--LYHVEELV 153
N+ F L+G+ D P VQ P+ +V + G + K E ++ E+++
Sbjct: 60 KNTVRNFKRLIGRKFDDPEVQKELKFLPF-KVVELPD-GKVGIKVNYLGEEKVFSPEQVL 117
Query: 154 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 213
AMLL K +E A + + + VI VP YF +R+++L A ++AGL L+LMN+ TA A
Sbjct: 118 AMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATA 177
Query: 214 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 249
L YGI+K E P +V F D+G ST VSIV++
Sbjct: 178 LAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAF 213
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 284 bits (728), Expect = 2e-83
Identities = 193/655 (29%), Positives = 291/655 (44%), Gaps = 79/655 (12%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
V+ +DLG+ VA++ G P E+ N E R TP++VAF ER G+ A+ P
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGP-EVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPK 59
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
N+ L+G+ PVVQ PY +V V E + E++ AM+L
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPY-KVVKLPNGDAGVEVRYLGETFTPEQISAMVL 118
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K +E A G+ + +AVI VP YFN +RQ+ AG +AGL VL+++N+ TA AL YG
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 465 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 524
+ K KD V+ +D+G + VSI+ G E VL D L
Sbjct: 179 LDK-KDKERN----VLVFDLGGGTFDVSILEI------GDGVFE------VLATNGDTHL 221
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN-EHFAQIE 583
GG + RL D ++F KK D+ ++PRA+ +L + A + K LS+N E
Sbjct: 222 GGEDFDNRLVDHFVEEFK--KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFI 279
Query: 584 GLIDE-IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 642
+ + D +TRA+FE L DLF+R PVE+ALK + + I +V+LVG TR+P
Sbjct: 280 TAMADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIP 339
Query: 643 KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFER 702
VQE + + G E SK +N DEA A+GA +A LS F VK + D+ + +E
Sbjct: 340 AVQELVKEFFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIET-- 397
Query: 703 ESESGD--TKIIKRMLFGPSNTYPQKKILTFNKYV---GDFNFNVSYASEIEHLNPEQIA 757
G TK+I R T P KK F+ V E E
Sbjct: 398 ---LGGVMTKLIPRN-----TTIPTKKSQIFSTAADNQTAVEIQVYQG-EREMAPD---- 444
Query: 758 MLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEKQE 814
K + F++ G+ A +G I+ F +D +GIL++ + K++
Sbjct: 445 ---NKLLGSFELDGIPPA----------PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQ 491
Query: 815 AAESPLSKLGNTLTSLFSRSKTDENEKPINEA--VDEGNKTAEEPSKNVNSTESQQQSAE 872
S L+ DE E+ + +A +K +E + N E S E
Sbjct: 492 KITITASS---GLSD-------DEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLE 541
Query: 873 ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI 927
+S+K K K+ E + L + E+ +K + L ++
Sbjct: 542 KSLKEEGDKLPEADKKKVEEAIEWLKEE--------LEGEDKEEIEAKTEELQKV 588
Score = 141 bits (359), Expect = 7e-35
Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
V+ +DLG+ VA++ G P E+ N E R TP++VAF ER G+ A+ P
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGP-EVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPK 59
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
N+ L+G+ PVVQ PY +V V E + E++ AM+L
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPY-KVVKLPNGDAGVEVRYLGETFTPEQISAMVL 118
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K +E A G+ + +AVI VP YFN +RQ+ AG +AGL VL+++N+ TA AL YG
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 218 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-----YQVVKT 254
+ K KD V+ +D+G + VSI+ ++V+ T
Sbjct: 179 LDK-KDKERN----VLVFDLGGGTFDVSILEIGDGVFEVLAT 215
Score = 46.8 bits (112), Expect = 6e-05
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 884 ADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 943
DK K I+AS S L++ ++E+ + + + + + +A N E
Sbjct: 483 KDKGTGKE-QKITITAS------SGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEE 535
Query: 944 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 1003
++ + L+ EE + ++ K ++E WL+E+ + + +E K E+ +V
Sbjct: 536 YVYSLEKSLK-EEGDKLPEADKKK-----VEEAIEWLKEELEGEDKEEIEAKTEELQKVV 589
Query: 1004 VPIWERHRE 1012
PI ER +
Sbjct: 590 QPIGERMYQ 598
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 256 bits (656), Expect = 9e-74
Identities = 170/607 (28%), Positives = 271/607 (44%), Gaps = 85/607 (14%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 346
+DLG+ VA++ G ++ N E +R TP++VAF K GE G+ A+ P N+
Sbjct: 10 IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENT 69
Query: 347 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 406
+G+ + + + D + Y EE+ AM+L K
Sbjct: 70 IFSIKRKIGRGSNGLKISV----------------------EVDGKKYTPEEISAMILTK 107
Query: 407 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 466
+E A G+ + +AVI VP YFN +RQ+ A +AGL VL+L+N+ TA AL YG+
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 467 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGG 526
K K+ V+ YD+G + VS++ G E VL G D LGG
Sbjct: 168 KGKE------KTVLVYDLGGGTFDVSLLEI------GDGVFE------VLATGGDNHLGG 209
Query: 527 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 586
+ L D+L +F K D+ + A+ +L + A + K LS+ + + +
Sbjct: 210 DDFDNALIDYLVMEFK--GKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIG 267
Query: 587 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQE 646
+ID +TRA+FE L DL +R PVEQALK + + I VILVG TR+P VQE
Sbjct: 268 GDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQE 327
Query: 647 KITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESES 706
+ + G E K++N DEA ALGA +AA LS + D++ + +E
Sbjct: 328 LVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLL--DVIPLSLGIETLGGVR- 384
Query: 707 GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTKQISK 766
T II+R + T P KK F+ + A I E+ K + +
Sbjct: 385 --TPIIER-----NTTIPVKKSQEFSTAA-----DGQTAVAIHVFQGEREMAADNKSLGR 432
Query: 767 FDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNT 826
F++ G+ A + I+ F +D +GIL++ +L K+++ T
Sbjct: 433 FELDGIPPA------PRGVPQ-IEVTFDIDANGILNVTAKDLGTGKEQS---------IT 476
Query: 827 LTSLFSRSKTDENEKPINEAVDEGNKTAE------EPSKNVNSTESQQQSAEESVKNATQ 880
+ + S ++ I V++ A E + N ES S E+++K +
Sbjct: 477 IKASSGLS-----DEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIVK 531
Query: 881 TPDADKK 887
+ +K+
Sbjct: 532 VSEEEKE 538
Score = 122 bits (309), Expect = 8e-29
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 99
+DLG+ VA++ G ++ N E +R TP++VAF K GE G+ A+ P N+
Sbjct: 10 IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENT 69
Query: 100 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 159
+G+ + + + D + Y EE+ AM+L K
Sbjct: 70 IFSIKRKIGRGSNGLKISV----------------------EVDGKKYTPEEISAMILTK 107
Query: 160 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 219
+E A G+ + +AVI VP YFN +RQ+ A +AGL VL+L+N+ TA AL YG+
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 220 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250
K K+ V+ YD+G + VS++
Sbjct: 168 KGKE------KTVLVYDLGGGTFDVSLLEIG 192
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 237 bits (608), Expect = 1e-69
Identities = 132/399 (33%), Positives = 198/399 (49%), Gaps = 34/399 (8%)
Query: 281 YGIAVMSVDLG---SEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ 336
GI DLG S VA V G EI N E R TP++V F GE GE A+
Sbjct: 1 IGI-----DLGTTNSA---VAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAK 52
Query: 337 IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV 396
P N+ G F L+G+ D P+VQ K V + Y
Sbjct: 53 RQALDNPENTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIP----VPVELGGKKYSP 108
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
EE+ A++L K +E A G+ + EAVI VP YFN +R++ +A E+AGL V++L+N+
Sbjct: 109 EEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEP 168
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
TA AL YG+ K+ + T ++ +D+G + VS+V + VL
Sbjct: 169 TAAALAYGLDKKDEKGRT----ILVFDLGGGTFDVSLVEVE------------GGVFEVL 212
Query: 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576
G D LGG + L D+L +KF +K D+ +PRA+ +L + A + K LS++
Sbjct: 213 ATGGDNHLGGDDFDNALADYLAEKF--KEKGGIDLRLDPRALRRLKEAAEKAKIALSSSE 270
Query: 577 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636
E + GL D ++ +TR EFE L L +R VE+ L + + + I V+LVG
Sbjct: 271 EATITLPGLGSGGDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVG 330
Query: 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675
+R+P V+E + ++ G + ++++ DEA ALGA AA
Sbjct: 331 GSSRIPLVRELLEELFGKKPLRSIDPDEAVALGAAIYAA 369
Score = 122 bits (309), Expect = 6e-30
Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 34 YGIAVMSVDLG---SEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ 89
GI DLG S VA V G EI N E R TP++V F GE GE A+
Sbjct: 1 IGI-----DLGTTNSA---VAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAK 52
Query: 90 IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV 149
P N+ G F L+G+ D P+VQ K V + Y
Sbjct: 53 RQALDNPENTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIP----VPVELGGKKYSP 108
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
EE+ A++L K +E A G+ + EAVI VP YFN +R++ +A E+AGL V++L+N+
Sbjct: 109 EEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEP 168
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250
TA AL YG+ K+ + T ++ +D+G + VS+V +
Sbjct: 169 TAAALAYGLDKKDEKGRT----ILVFDLGGGTFDVSLVEVE 205
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 214 bits (547), Expect = 2e-61
Identities = 133/393 (33%), Positives = 207/393 (52%), Gaps = 23/393 (5%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
V+ +DLG+ + V + G +EI N + R TP+ VAF GER G+ A+ T P
Sbjct: 3 VIGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPE 61
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAML 403
N+ L+G+ D VQ PY +V + + I + + EE+ AM+
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPY-KVVNKDGKPYIEVDVKGEKKTFSPEEISAMV 120
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL V++++N+ TA A+ Y
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K+ E N ++ +D+G + VS++ T + G E VL D
Sbjct: 181 GLDKKGG--EKN---ILVFDLGGGTFDVSLL------TIDNGVFE------VLATNGDTH 223
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 583
LGG + R+ + K F KK KD+ ++ RA+ KL +E + K LS+ ++ +IE
Sbjct: 224 LGGEDFDQRVMEHFIKLFK--KKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIE 281
Query: 584 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 643
L D DF +TRA+FE LN DLF + PV++ L+ + + I +++LVG TR+PK
Sbjct: 282 SLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPK 341
Query: 644 VQEKITKVV-GVELSKNLNTDEAAALGAVYKAA 675
VQ+ + + G E S+ +N DEA A GA +A
Sbjct: 342 VQQLLKEFFNGKEPSRGINPDEAVAYGAAVQAG 374
Score = 108 bits (272), Expect = 4e-25
Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 13/223 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
V+ +DLG+ + V + G +EI N + R TP+ VAF GER G+ A+ T P
Sbjct: 3 VIGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPE 61
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAML 156
N+ L+G+ D VQ PY +V + + I + + EE+ AM+
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPY-KVVNKDGKPYIEVDVKGEKKTFSPEEISAMV 120
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL V++++N+ TA A+ Y
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-----YQVVKT 254
G+ K+ E N ++ +D+G + VS+++ ++V+ T
Sbjct: 181 GLDKKGG--EKN---ILVFDLGGGTFDVSLLTIDNGVFEVLAT 218
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 209 bits (532), Expect = 2e-59
Identities = 129/399 (32%), Positives = 205/399 (51%), Gaps = 20/399 (5%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 343
+V+ D+G + +A+ G +E N+ S R TP++++F RT G A+
Sbjct: 1 SVVGFDVGFQSCYIAVARAG-GIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHA 59
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 401
+N+ F G++ + P VQ K Y D+V + G V + L+ VE++ A
Sbjct: 60 NNTVSNFKRFHGRAFNDPFVQKEKENLSY-DLVPLKNGGVGVKVMYMGEEHLFSVEQITA 118
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
MLL K +E A + + + + VI VP +F ER+S+L A ++ GL L+LMND TAVAL
Sbjct: 119 MLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVAL 178
Query: 462 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
NYGI+K+ + P V+F DMG + VS ++ K K VLG +
Sbjct: 179 NYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLK------------VLGTAF 226
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
D LGG +L + +F K D RA+ +L++E +LK ++S+N+
Sbjct: 227 DPFLGGKNFDEKLVEHFCAEFK--TKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLP 284
Query: 581 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
IE +++ D + R++FE L DL R+ P+ L+ + + ++ +S V +VG T
Sbjct: 285 LNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGAT 344
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
R+P V+E+I K G ++S LN DEA A G + A LS
Sbjct: 345 RIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 383
Score = 126 bits (317), Expect = 5e-31
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 5/222 (2%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 96
+V+ D+G + +A+ G +E N+ S R TP++++F RT G A+
Sbjct: 1 SVVGFDVGFQSCYIAVARAG-GIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHA 59
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 154
+N+ F G++ + P VQ K Y D+V + G V + L+ VE++ A
Sbjct: 60 NNTVSNFKRFHGRAFNDPFVQKEKENLSY-DLVPLKNGGVGVKVMYMGEEHLFSVEQITA 118
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
MLL K +E A + + + + VI VP +F ER+S+L A ++ GL L+LMND TAVAL
Sbjct: 119 MLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVAL 178
Query: 215 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 255
NYGI+K+ + P V+F DMG + VS ++ K K
Sbjct: 179 NYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLK 220
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 207 bits (528), Expect = 8e-59
Identities = 132/392 (33%), Positives = 204/392 (52%), Gaps = 20/392 (5%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 347
+DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+N+
Sbjct: 4 IDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTV 62
Query: 348 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 407
L+G+ PVVQ +P+ + + IV + + ++ EE+ +M+L K
Sbjct: 63 FDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLTKM 122
Query: 408 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 467
+E A G+ + AVI VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG+ K
Sbjct: 123 KEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 182
Query: 468 RKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 527
+ +V+ +D+G + VS++ T E G E V D LGG
Sbjct: 183 KGG----GERNVLIFDLGGGTFDVSLL------TIEDGIFE------VKATAGDTHLGGE 226
Query: 528 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID 587
+ RL + ++F +K KD+ N RA+ +L R K LS++ + +I+ L +
Sbjct: 227 DFDNRLVNHFVQEFK--RKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 284
Query: 588 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEK 647
IDF +TRA FE L DLF PVE+ L+ + + I ++LVG TR+PKVQ+
Sbjct: 285 GIDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKL 344
Query: 648 ITKVV-GVELSKNLNTDEAAALGAVYKAADLS 678
+ G EL+K++N DEA A GA +AA LS
Sbjct: 345 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
Score = 105 bits (265), Expect = 4e-24
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 5/208 (2%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 100
+DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+N+
Sbjct: 4 IDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTV 62
Query: 101 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 160
L+G+ PVVQ +P+ + + IV + + ++ EE+ +M+L K
Sbjct: 63 FDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLTKM 122
Query: 161 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 220
+E A G+ + AVI VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG+ K
Sbjct: 123 KEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 182
Query: 221 RKDFNETNPVHVMFYDMGAWSTTVSIVS 248
+ +V+ +D+G + VS+++
Sbjct: 183 KGG----GERNVLIFDLGGGTFDVSLLT 206
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 212 bits (541), Expect = 6e-58
Identities = 198/682 (29%), Positives = 325/682 (47%), Gaps = 81/682 (11%)
Query: 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 339
+ G A+ +DLG+ + V V +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 TKGPAI-GIDLGTTYSCVG-VWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 340 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEE 398
R P N+ L+G+ D VVQ +P+ +++ I V + + +H EE
Sbjct: 60 ARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEE 119
Query: 399 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA 458
+ +M+L K +E A G+ + +AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA
Sbjct: 120 ISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 179
Query: 459 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518
A+ YG+ K K E N V+ +D+G + VS++ T E G E V
Sbjct: 180 AAIAYGLDK-KGDGEKN---VLIFDLGGGTFDVSLL------TIEDGIFE------VKAT 223
Query: 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEH 578
D LGG + RL +F + F K KD+ N RA+ +L + R K LS++ +
Sbjct: 224 AGDTHLGGEDFDNRLVEFCVQDFKR-KNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQA 282
Query: 579 FAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG 638
+I+ L + ID+ + ++RA FE L D F PVE+ LK + + + +V+LVG
Sbjct: 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGS 342
Query: 639 TRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQ 697
TR+PKVQ I G E K++N DEA A GA +AA L TG + + +D++L +
Sbjct: 343 TRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL-TGEQSSQ--VQDLLLLDVT 399
Query: 698 -VEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
+ E+ G TK+I+R + T P KK F Y + + E E +
Sbjct: 400 PLSLGLETAGGVMTKLIER-----NTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKD 454
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEK 812
+LG KF + G+ A +G I+ F +D +GIL+ V
Sbjct: 455 NNLLG-----KFHLDGIPPA----------PRGVPQIEVTFDIDANGILN-------VSA 492
Query: 813 QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAE 872
++ + +K+ T+T+ R + ++ +NEA E K +E ++ ++ ++
Sbjct: 493 EDKSTGKSNKI--TITNDKGRLSKADIDRMVNEA--EKYKAEDEANRERVEAKNGLENYC 548
Query: 873 ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI----- 927
S+KN Q VK +S S+ +T+ EK ++++L L+ NQ+
Sbjct: 549 YSMKNTLQDEK---------VKGKLSDSD----KATI-EKAIDEALEWLEK-NQLAEKEE 593
Query: 928 -EHAKVRKEKALNSLESLLFDA 948
EH + E N + + ++ A
Sbjct: 594 FEHKQKEVESVCNPIMTKMYQA 615
Score = 110 bits (277), Expect = 1e-24
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 7/217 (3%)
Query: 33 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 92
+ G A+ +DLG+ + V V +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 TKGPAI-GIDLGTTYSCVG-VWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 93 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEE 151
R P N+ L+G+ D VVQ +P+ +++ I V + + +H EE
Sbjct: 60 ARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEE 119
Query: 152 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA 211
+ +M+L K +E A G+ + +AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA
Sbjct: 120 ISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 179
Query: 212 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
A+ YG+ K K E N V+ +D+G + VS+++
Sbjct: 180 AAIAYGLDK-KGDGEKN---VLIFDLGGGTFDVSLLT 212
Score = 40.5 bits (95), Expect = 0.006
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 909 LNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKT 968
L++ +++ +++ + + A + +A N LE+ + K+ L+ E+ + ++ T
Sbjct: 512 LSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKAT 571
Query: 969 IVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPI 1006
I IDE WLE++ AE + E+K E+ S+ PI
Sbjct: 572 IEKAIDEALEWLEKNQ-LAEKEEFEHKQKEVESVCNPI 608
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 186 bits (473), Expect = 2e-51
Identities = 129/399 (32%), Positives = 202/399 (50%), Gaps = 20/399 (5%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 343
+V+ +DLG + VA+ G +E N+ S R TP ++F R+ G A+
Sbjct: 1 SVVGIDLGFQSCYVAVARAG-GIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNA 59
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 401
N+ F G++ P VQ K Y D+V G V + + E++ A
Sbjct: 60 KNTVQGFKRFHGRAFSDPFVQAEKPSLAY-DLVQLPTGSTGIKVMYMEEERNFTTEQVTA 118
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
MLL K +E A + + + + V+ VP ++ ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 119 MLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVAL 178
Query: 462 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
YGI+K+ E P +V+F DMG + VS+ ++ K K VL +
Sbjct: 179 AYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLK------------VLATAF 226
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
D TLGG + L ++ ++F KK D+ RA+ +L +E +LK ++SAN
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFG--KKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLP 284
Query: 581 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
IE +++ID + R +F + +DL RV P+ L+ + + + I V +VG T
Sbjct: 285 LNIECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGAT 344
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
R+P V+EKI+K G E+S LN DEA A G + A LS
Sbjct: 345 RIPAVKEKISKFFGKEVSTTLNADEAVARGCALQCAILS 383
Score = 100 bits (251), Expect = 2e-22
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 5/222 (2%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 96
+V+ +DLG + VA+ G +E N+ S R TP ++F R+ G A+
Sbjct: 1 SVVGIDLGFQSCYVAVARAG-GIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNA 59
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 154
N+ F G++ P VQ K Y D+V G V + + E++ A
Sbjct: 60 KNTVQGFKRFHGRAFSDPFVQAEKPSLAY-DLVQLPTGSTGIKVMYMEEERNFTTEQVTA 118
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
MLL K +E A + + + + V+ VP ++ ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 119 MLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVAL 178
Query: 215 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 255
YGI+K+ E P +V+F DMG + VS+ ++ K K
Sbjct: 179 AYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLK 220
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 186 bits (472), Expect = 2e-51
Identities = 125/399 (31%), Positives = 202/399 (50%), Gaps = 20/399 (5%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 343
+V+ +DLG +A+ G +E N+ S R TP ++ R G A+
Sbjct: 1 SVVGIDLGFLNCYIAVARSG-GIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNV 59
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY-YDIVADEERGTIVFKTNDNELYHVEELVAM 402
N+ F L G+S D P+VQ + R PY + + G V + + +E++ M
Sbjct: 60 RNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGM 119
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
LL K +E + + + + + VI +P +F ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 120 LLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALA 179
Query: 463 YGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
YGI+K +D + P +V+F DMG + VS+ ++ K K VL +
Sbjct: 180 YGIYK-QDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLK------------VLATTF 226
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
D LGG L D+ +F K +V EN RA+ +L++E +LK ++SAN
Sbjct: 227 DPYLGGRNFDEALVDYFCDEFKTKYKI--NVKENSRALLRLYQECEKLKKLMSANASDLP 284
Query: 581 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
IE ++++D + RA+FE L L RV P++ ++ + + + I + +VG T
Sbjct: 285 LNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGAT 344
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
R+P V+E+IT ++S LN DEA A G + A LS
Sbjct: 345 RIPAVKEQITSFFLKDISTTLNADEAVARGCALQCAILS 383
Score = 103 bits (258), Expect = 2e-23
Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 5/222 (2%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 96
+V+ +DLG +A+ G +E N+ S R TP ++ R G A+
Sbjct: 1 SVVGIDLGFLNCYIAVARSG-GIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNV 59
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY-YDIVADEERGTIVFKTNDNELYHVEELVAM 155
N+ F L G+S D P+VQ + R PY + + G V + + +E++ M
Sbjct: 60 RNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGM 119
Query: 156 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 215
LL K +E + + + + + VI +P +F ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 120 LLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALA 179
Query: 216 YGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 255
YGI+K +D + P +V+F DMG + VS+ ++ K K
Sbjct: 180 YGIYK-QDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLK 220
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 182 bits (465), Expect = 2e-50
Identities = 135/402 (33%), Positives = 209/402 (51%), Gaps = 38/402 (9%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 341
++ +DLG+ VA++ G P I N E R TP++VAF K GER G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIP-NAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTN- 61
Query: 342 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 401
P N+ +G+ D + + PY +V + + +N + Y +E+ A
Sbjct: 62 -PENTIFSIKRFMGRKFDEVEEE---RKVPYKVVVDEGGNYKVEIDSNGKD-YTPQEISA 116
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
M+L K +E A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176
Query: 462 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521
YG+ K+ NE ++ YD+G + VSI+ G E VL D
Sbjct: 177 AYGLDKKG--NEK----ILVYDLGGGTFDVSILEI------GDGVFE------VLATNGD 218
Query: 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQ 581
LGG + R+ D+L ++F K+ D+ ++ A+ +L + A + K LS+ E
Sbjct: 219 THLGGDDFDQRIIDWLVEEF--KKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEIN 276
Query: 582 IEGL-IDE-----IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
+ + D ++ L TRA+FE L EDL +R PV+QALK + + I +VILV
Sbjct: 277 LPFITADATGPKHLEMTL--TRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILV 334
Query: 636 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677
G TR+P VQE + ++ G E +K +N DE A+GA + L
Sbjct: 335 GGSTRIPAVQELVKELFGKEPNKGVNPDEVVAIGAAIQGGVL 376
Score = 108 bits (271), Expect = 5e-25
Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 16/212 (7%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 94
++ +DLG+ VA++ G P I N E R TP++VAF K GER G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIP-NAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTN- 61
Query: 95 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 154
P N+ +G+ D + + PY +V + + +N + Y +E+ A
Sbjct: 62 -PENTIFSIKRFMGRKFDEVEEE---RKVPYKVVVDEGGNYKVEIDSNGKD-YTPQEISA 116
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
M+L K +E A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176
Query: 215 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
YG+ K+ NE ++ YD+G + VSI
Sbjct: 177 AYGLDKKG--NEK----ILVYDLGGGTFDVSI 202
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 176 bits (449), Expect = 2e-48
Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 23/393 (5%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
++ +DLG+ VA++ P+ I N E KR TP++V+F K GE A+ P
Sbjct: 4 IIGIDLGTTNSCVAVIDKTTPVIIE-NAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
N++ L+G+ VQ K + PYY IV E R + + + Y ++ + +L
Sbjct: 63 NTFFATKRLIGRQFKDVEVQR-KMKVPYYKIV--EGRNGDAWIYTNGKKYSPSQIASFVL 119
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K ++ A G+ ++EAVI VP YFN +RQ+ AG LAGLKVL+++N+ TA AL YG
Sbjct: 120 KKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYG 179
Query: 465 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 524
I KRK ++ YD+G + +SI++ E G E V D L
Sbjct: 180 IDKRK-----ENKNIAVYDLGGGTFDISILNI------EDGVFE------VKATNGDTML 222
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 584
GG + + ++ K+F K D+ N +A+ ++ + A + K LS++ E ++
Sbjct: 223 GGEDFDNAIVQYIIKEFKR--KYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPY 280
Query: 585 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKV 644
L ++ +TR EFE L + + R YP +Q LK + + I +VILVG TR+P +
Sbjct: 281 LDGPKHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYI 340
Query: 645 QEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677
Q + ++ G + SK++N DEA ALGA + + L
Sbjct: 341 QNVVQEIFGKKPSKSVNPDEAVALGAAIQGSIL 373
Score = 107 bits (270), Expect = 6e-25
Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 9/210 (4%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
++ +DLG+ VA++ P+ I N E KR TP++V+F K GE A+ P
Sbjct: 4 IIGIDLGTTNSCVAVIDKTTPVIIE-NAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
N++ L+G+ VQ K + PYY IV E R + + + Y ++ + +L
Sbjct: 63 NTFFATKRLIGRQFKDVEVQR-KMKVPYYKIV--EGRNGDAWIYTNGKKYSPSQIASFVL 119
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K ++ A G+ ++EAVI VP YFN +RQ+ AG LAGLKVL+++N+ TA AL YG
Sbjct: 120 KKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYG 179
Query: 218 IFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247
I KRK ++ YD+G + +SI+
Sbjct: 180 IDKRK-----ENKNIAVYDLGGGTFDISIL 204
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 180 bits (459), Expect = 1e-47
Identities = 189/641 (29%), Positives = 298/641 (46%), Gaps = 121/641 (18%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
++ +DLG+ VA++ G P+ I N E R TP++VAF K GER G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIP-NAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N+ +G+ D V R PY +V D G + K + E Y +E+ AM+
Sbjct: 61 ENTIYSIKRFMGRRFD--EVTEEAKRVPY-KVVGDG--GDVRVKVDGKE-YTPQEISAMI 114
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL Y
Sbjct: 115 LQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 174
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K K +E ++ +D+G + VSI+ G E VL D
Sbjct: 175 GLDKSKK-DEK----ILVFDLGGGTFDVSILEIG------DGVFE------VLSTAGDTH 217
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 583
LGG + R+ D+L +F K+ D+ ++ A+ +L + A + K LS+
Sbjct: 218 LGGDDFDQRIIDWLADEFK--KEEGIDLSKDKMALQRLKEAAEKAKIELSSVLS------ 269
Query: 584 GLIDEID-------------FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 630
EI+ ++ +TRA+FE L DL +R PV QALK + + I
Sbjct: 270 ---TEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDID 326
Query: 631 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKD 690
+VILVG TR+P VQE + G E +K++N DE A+GA + V K KD
Sbjct: 327 EVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGG-------VLKGDVKD 379
Query: 691 IVLY---PIQVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYAS 746
++L P+ + E+ G TK+I+R + T P KK F S A+
Sbjct: 380 VLLLDVTPLSLGI--ETLGGVMTKLIER-----NTTIPTKKSQVF-----------STAA 421
Query: 747 ------EIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDE 797
+I L E+ K + +F+++G+ A +G I+ F +D
Sbjct: 422 DNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPA----------PRGVPQIEVTFDIDA 471
Query: 798 SGILSLVNIELVVEKQEA----AESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKT 853
+GIL + + K+++ A S LS+ +E E+ + EA E N
Sbjct: 472 NGILHVSAKDKGTGKEQSITITASSGLSE--------------EEIERMVKEA--EANAE 515
Query: 854 AEEPSKNV----NSTESQQQSAEESVKNATQTPDADKKPKI 890
++ K N+ +S AE+++K A A++K KI
Sbjct: 516 EDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKI 556
Score = 104 bits (261), Expect = 9e-23
Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 13/210 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
++ +DLG+ VA++ G P+ I N E R TP++VAF K GER G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIP-NAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N+ +G+ D V R PY +V D G + K + E Y +E+ AM+
Sbjct: 61 ENTIYSIKRFMGRRFD--EVTEEAKRVPY-KVVGDG--GDVRVKVDGKE-YTPQEISAMI 114
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL Y
Sbjct: 115 LQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 174
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
G+ K K +E ++ +D+G + VSI
Sbjct: 175 GLDKSKK-DEK----ILVFDLGGGTFDVSI 199
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 167 bits (426), Expect = 3e-45
Identities = 110/371 (29%), Positives = 176/371 (47%), Gaps = 20/371 (5%)
Query: 307 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF 366
++ N R TP +VAF E G A+ R +N+ +LG+S P Q
Sbjct: 23 DVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKE 82
Query: 367 KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIV 426
K+ I D E +F + +E+ ++ K +E A + G + VI V
Sbjct: 83 KTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITV 142
Query: 427 PGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGA 486
P YF++ ++ ++ +A E AG VL+++++ +A AL YGI + + T +V+ Y +G
Sbjct: 143 PVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGIGQD---SPTGKSYVLVYRLGG 199
Query: 487 WSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKK 546
ST V+I+ G VL D LGG L +L NE K+
Sbjct: 200 TSTDVTILRVN------SGMYR------VLATSTDDNLGGESFTETLSQYLA---NEFKR 244
Query: 547 TTK-DVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNE 605
K DV N RA+ KL A K +LS +E L + IDF+ V+RA FE+L
Sbjct: 245 KWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCS 304
Query: 606 DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITK-VVGVELSKNLNTDE 664
LF + P+E+ L+ + + I++V+L G +R+PK+Q+ I VE+ +++ DE
Sbjct: 305 SLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDE 364
Query: 665 AAALGAVYKAA 675
A+GA +A
Sbjct: 365 VIAIGAAKQAG 375
Score = 84.4 bits (209), Expect = 5e-17
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 8/204 (3%)
Query: 60 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF 119
++ N R TP +VAF E G A+ R +N+ +LG+S P Q
Sbjct: 23 DVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKE 82
Query: 120 KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIV 179
K+ I D E +F + +E+ ++ K +E A + G + VI V
Sbjct: 83 KTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITV 142
Query: 180 PGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGA 239
P YF++ ++ ++ +A E AG VL+++++ +A AL YGI + + T +V+ Y +G
Sbjct: 143 PVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGIGQD---SPTGKSYVLVYRLGG 199
Query: 240 WSTTVSIVS-----YQVVKTKERG 258
ST V+I+ Y+V+ T
Sbjct: 200 TSTDVTILRVNSGMYRVLATSTDD 223
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 161 bits (410), Expect = 2e-43
Identities = 125/383 (32%), Positives = 183/383 (47%), Gaps = 37/383 (9%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 347
+DLG+ VA V G ++I ++ + P++V + G + G DA + P N+
Sbjct: 5 IDLGTTNSLVASVLSG-KVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKNTI 63
Query: 348 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 407
L+GKSI+ K FPY I+ + G I+F T + VE + A +L
Sbjct: 64 SSVKRLMGKSIEDI-----KKSFPYLPILEGKNGGIILFHTQQGTVTPVE-VSAEILKAL 117
Query: 408 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 467
+E A S G I AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA AL YG+ K
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 468 RKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 527
+K+ YD+G + VSI+ +G E VL G D LGG
Sbjct: 178 KKE------GIYAVYDLGGGTFDVSILKL------HKGVFE------VLATGGDSALGGD 219
Query: 528 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID 587
+ L + L +KK + A+L A + K LS E +E +
Sbjct: 220 DFDQLLAELL------LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE----VE--VR 267
Query: 588 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEK 647
DFK +TR EFE L + L + +QAL+ + + + I VILVG TR+P VQE
Sbjct: 268 GQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEA 327
Query: 648 ITKVVGVELSKNLNTDEAAALGA 670
++K G + ++N DE A+GA
Sbjct: 328 VSKFFGQKPLCDINPDEVVAIGA 350
Score = 93.0 bits (232), Expect = 4e-20
Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 100
+DLG+ VA V G ++I ++ + P++V + G + G DA + P N+
Sbjct: 5 IDLGTTNSLVASVLSG-KVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKNTI 63
Query: 101 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 160
L+GKSI+ K FPY I+ + G I+F T + VE + A +L
Sbjct: 64 SSVKRLMGKSIEDI-----KKSFPYLPILEGKNGGIILFHTQQGTVTPVE-VSAEILKAL 117
Query: 161 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 220
+E A S G I AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA AL YG+ K
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 221 RKDFNETNPVHVMFYDMGAWSTTVSIV 247
+K+ YD+G + VSI+
Sbjct: 178 KKE------GIYAVYDLGGGTFDVSIL 198
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 161 bits (408), Expect = 7e-43
Identities = 132/402 (32%), Positives = 196/402 (48%), Gaps = 49/402 (12%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRF 342
AV+ +DLG+ VA++ P I N E R TP++VAF K GER G A+
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIE-NAEGARTTPSVVAFTKDGERLVGMPAKRQAVTN 61
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD------EERGTIVFKTNDNELYHV 396
P N+ L+G+ D P VQ PY + A E G + Y
Sbjct: 62 PENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHG---------KKYSP 112
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
++ A +L K +E A G+ + AVI VP YFN +RQ+ AG++AGL VL+++N+
Sbjct: 113 SQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEP 172
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
TA AL YG ++ + + YD+G + +SI+ Q +G E V
Sbjct: 173 TAAALAYG------LDKKDDKVIAVYDLGGGTFDISILEIQ------KGVFE------VK 214
Query: 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576
D LGG + L L K+F K+ D+ ++ A+ +L + A + K LS++
Sbjct: 215 STNGDTFLGGEDFDNALLRHLVKEFK--KEQGIDLTKDNMALQRLREAAEKAKIELSSS- 271
Query: 577 EHFAQIEGLIDEID--------FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV 628
Q + + I + +TRA+FE+L DL R P ++ALK + V
Sbjct: 272 ---LQTDINLPYITADASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSD 328
Query: 629 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670
I +VILVG TR+PKVQE + ++ G E SK +N DEA A+GA
Sbjct: 329 IGEVILVGGMTRMPKVQETVKEIFGKEPSKGVNPDEAVAIGA 370
Score = 95.9 bits (239), Expect = 6e-21
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRF 95
AV+ +DLG+ VA++ P I N E R TP++VAF K GER G A+
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIE-NAEGARTTPSVVAFTKDGERLVGMPAKRQAVTN 61
Query: 96 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD------EERGTIVFKTNDNELYHV 149
P N+ L+G+ D P VQ PY + A E G + Y
Sbjct: 62 PENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHG---------KKYSP 112
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
++ A +L K +E A G+ + AVI VP YFN +RQ+ AG++AGL VL+++N+
Sbjct: 113 SQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEP 172
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250
TA AL YG ++ + + YD+G + +SI+ Q
Sbjct: 173 TAAALAYG------LDKKDDKVIAVYDLGGGTFDISILEIQ 207
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 164 bits (417), Expect = 3e-42
Identities = 115/388 (29%), Positives = 181/388 (46%), Gaps = 34/388 (8%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 346
+DLG+ VA V GVP E+ + E + P++V + K G G++A P N+
Sbjct: 4 IDLGTTNSLVASVRSGVP-EVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNT 62
Query: 347 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 406
L+G+SI+ S PY V D + +T + VE + A +L K
Sbjct: 63 ISSVKRLMGRSIEDIKTF---SILPY-RFV-DGPGEMVRLRTVQGTVTPVE-VSAEILKK 116
Query: 407 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 466
++ A S G + AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA A+ YG+
Sbjct: 117 LKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 176
Query: 467 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGG 526
K + YD+G + VSI+ +G E VL G D LGG
Sbjct: 177 KASE------GIYAVYDLGGGTFDVSILKL------TKGVFE------VLATGGDSALGG 218
Query: 527 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 586
+ L ++ +K+ NP L + A K L+ +++ +
Sbjct: 219 DDFDHALAKWI------LKQLGISADLNPEDQRLLLQAARAAKEALTDAES--VEVDFTL 270
Query: 587 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQE 646
D DFK +TR EFEAL + L + +AL+ + + ++ I V+LVG TR+P V+
Sbjct: 271 DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRR 330
Query: 647 KITKVVGVELSKNLNTDEAAALGAVYKA 674
+ ++ G E +++ D+ ALGA +A
Sbjct: 331 AVAELFGQEPLTDIDPDQVVALGAAIQA 358
Score = 93.9 bits (234), Expect = 2e-19
Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 99
+DLG+ VA V GVP E+ + E + P++V + K G G++A P N+
Sbjct: 4 IDLGTTNSLVASVRSGVP-EVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNT 62
Query: 100 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 159
L+G+SI+ S PY V D + +T + VE + A +L K
Sbjct: 63 ISSVKRLMGRSIEDIKTF---SILPY-RFV-DGPGEMVRLRTVQGTVTPVE-VSAEILKK 116
Query: 160 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 219
++ A S G + AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA A+ YG+
Sbjct: 117 LKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 176
Query: 220 KRKDFNETNPVHVMFYDMGAWSTTVSI 246
K + YD+G + VSI
Sbjct: 177 KASE------GIYAVYDLGGGTFDVSI 197
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 165 bits (418), Expect = 4e-42
Identities = 186/641 (29%), Positives = 297/641 (46%), Gaps = 89/641 (13%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
V+ +DLG+ VA + G P I N E +R TP++VA+ K G+R G+ A+ P
Sbjct: 41 VVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N++ +G+ + V + +S+ Y +V DE + + + EE+ A +
Sbjct: 100 ENTFFSVKRFIGRKMSE-VDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 156
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K + AS + +AVI VP YFN +R + AG +AGL+VL+++N+ TA +L Y
Sbjct: 157 LRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 216
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G F++K NET ++ +D+G + VS++ G E VL D
Sbjct: 217 G-FEKKS-NET----ILVFDLGGGTFDVSVLEVG------DGVFE------VLSTSGDTH 258
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA---NNEHFA 580
LGG + R+ D+L F K D+ ++ +A+ +L + A + K LS+ +
Sbjct: 259 LGGDDFDKRIVDWLASNFK--KDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLP 316
Query: 581 QIEGLID---EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGA 637
I D ID L TRA+FE L DL DR PVE AL+ + + I +VILVG
Sbjct: 317 FITATADGPKHIDTTL--TRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGG 374
Query: 638 GTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQ 697
TR+P VQE + K+ G + + +N DE ALGA +A L+ DIVL +
Sbjct: 375 STRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE-------VSDIVLLDVT 427
Query: 698 -VEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
+ E+ G TKII R + T P K F+ D +V EI L E+
Sbjct: 428 PLSLGLETLGGVMTKIIPR-----NTTLPTSKSEVFST-AADGQTSV----EINVLQGER 477
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEK 812
+ K + F + G+ A +G I+ F +D +GILS+ + K
Sbjct: 478 EFVRDNKSLGSFRLDGIPPA----------PRGVPQIEVKFDIDANGILSVSATDKGTGK 527
Query: 813 QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQS-- 870
++ T+T + K DE E+ + EA K A+E + ++ +++ Q+
Sbjct: 528 KQDI---------TITGASTLPK-DEVERMVQEA----EKFAKEDKEKRDAVDTKNQADS 573
Query: 871 ----AEESVKNATQTPDADKKPKI----VTVKEPISASETR 903
E+ +K AD K K+ +K+ I++ T+
Sbjct: 574 VVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQ 614
Score = 92.6 bits (230), Expect = 5e-19
Identities = 68/211 (32%), Positives = 114/211 (54%), Gaps = 11/211 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
V+ +DLG+ VA + G P I N E +R TP++VA+ K G+R G+ A+ P
Sbjct: 41 VVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N++ +G+ + V + +S+ Y +V DE + + + EE+ A +
Sbjct: 100 ENTFFSVKRFIGRKMSE-VDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 156
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K + AS + +AVI VP YFN +R + AG +AGL+VL+++N+ TA +L Y
Sbjct: 157 LRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 216
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247
G F++K NET ++ +D+G + VS++
Sbjct: 217 G-FEKKS-NET----ILVFDLGGGTFDVSVL 241
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 161 bits (410), Expect = 4e-41
Identities = 128/404 (31%), Positives = 206/404 (50%), Gaps = 39/404 (9%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
++ +DLG+ VA++ G P+ IA N E R TP++V F K GE G+ A+ P
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIA-NAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAM 402
N++ +G+ D + R PY I +E +G + K + EEL AM
Sbjct: 63 QNTFYNLKRFIGRRYDE--LDPESKRVPY-TIRRNE-QGNVRIKCPRLEREFAPEELSAM 118
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L K + AS G+ + AVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSI--VSYQVVKTKERGFVETHPQVSVLGVGY 520
YG R ++T V+ +D+G + VS+ V V + K + G
Sbjct: 179 YG-LDRSS-SQT----VLVFDLGGGTFDVSLLEVGNGVFEVK-----------ATSG--- 218
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA------ 574
D LGG + R+ D+L ++F E + D+ + +A+ +L + A + K LS
Sbjct: 219 DTQLGGNDFDKRIVDWLAEQFLEKEGI--DLRRDRQALQRLTEAAEKAKIELSGVSVTDI 276
Query: 575 NNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL 634
+ E I+ +L R +FE+L DL DR+ PV++ALK + + + I +V+L
Sbjct: 277 SLPFITATEDGPKHIETRL--DRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVL 334
Query: 635 VGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
VG TR+P VQ+ + ++ E ++N+N DE A+GA +A L+
Sbjct: 335 VGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILA 378
Score = 100 bits (250), Expect = 2e-21
Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 13/211 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
++ +DLG+ VA++ G P+ IA N E R TP++V F K GE G+ A+ P
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIA-NAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAM 155
N++ +G+ D + R PY I +E +G + K + EEL AM
Sbjct: 63 QNTFYNLKRFIGRRYDE--LDPESKRVPY-TIRRNE-QGNVRIKCPRLEREFAPEELSAM 118
Query: 156 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 215
+L K + AS G+ + AVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 216 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
YG R ++T V+ +D+G + VS+
Sbjct: 179 YG-LDRSS-SQT----VLVFDLGGGTFDVSL 203
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 160 bits (408), Expect = 6e-41
Identities = 131/402 (32%), Positives = 196/402 (48%), Gaps = 77/402 (19%)
Query: 297 VAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ----------------IIG 339
VA++ G P I N E R TP++VAF K GER G+ A+ ++G
Sbjct: 16 VAVMEGGEPKVIE-NAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMG 74
Query: 340 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 399
R VQ PY + AD G + + + Y +E+
Sbjct: 75 RRDE------------------EVQKDIKLVPYKIVKADN--GDAWVEIDGKK-YTPQEI 113
Query: 400 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 459
AM+L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 460 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKE--RGFVETHPQVSVLG 517
AL YG+ K+ D E ++ YD+G + VSI+ E G E VL
Sbjct: 174 ALAYGLDKKGD--EK----ILVYDLGGGTFDVSIL--------EIGDGVFE------VLS 213
Query: 518 VGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE 577
D LGG + R+ D+L +F K+ D+ ++ A+ +L + A + K LS+ +
Sbjct: 214 TNGDTHLGGDDFDQRIIDYLADEFK--KENGIDLRKDKMALQRLKEAAEKAKIELSSAQQ 271
Query: 578 HFAQI---------EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV 628
+I G ++ KL TRA+FE L EDL +R P +QALK + + +
Sbjct: 272 --TEINLPFITADASGPKH-LEIKL--TRAKFEELTEDLVERTIEPCKQALKDAGLSVSD 326
Query: 629 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670
I +VILVG TR+P VQE + + G E +K +N DE A+GA
Sbjct: 327 IDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGA 368
Score = 91.7 bits (229), Expect = 8e-19
Identities = 70/214 (32%), Positives = 104/214 (48%), Gaps = 45/214 (21%)
Query: 50 VAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ----------------IIG 92
VA++ G P I N E R TP++VAF K GER G+ A+ ++G
Sbjct: 16 VAVMEGGEPKVIE-NAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMG 74
Query: 93 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 152
R VQ PY + AD G + + + Y +E+
Sbjct: 75 RRDE------------------EVQKDIKLVPYKIVKADN--GDAWVEIDGKK-YTPQEI 113
Query: 153 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 212
AM+L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 213 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
AL YG+ K+ D E ++ YD+G + VSI
Sbjct: 174 ALAYGLDKKGD--EK----ILVYDLGGGTFDVSI 201
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 157 bits (398), Expect = 9e-40
Identities = 184/661 (27%), Positives = 300/661 (45%), Gaps = 102/661 (15%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
V+ +DLG+ VA++ G P I N E R TP++VA+ K G+ G+ A+ P
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIP-NAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N++ +G+ + + +++ Y + D + N+ + EE+ A +
Sbjct: 63 ENTFYSVKRFIGRKFSE-ISE--EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K E AS G+ + +AVI VP YFN +RQ+ AG++AGL+VL+++N+ TA +L Y
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K+ NET ++ +D+G + VSI+ G E VL D
Sbjct: 180 GLDKKN--NET----ILVFDLGGGTFDVSILEVG------DGVFE------VLSTSGDTH 221
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLS---------- 573
LGG + ++ ++L K+F KK D+ ++ +A+ +L + A + K LS
Sbjct: 222 LGGDDFDKKIVNWLIKEFK--KKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLP 279
Query: 574 ---ANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 630
A IE + TRA+FE L DL +R PVE ALK + + I
Sbjct: 280 FITATQTGPKHIEKTL---------TRAKFEELCSDLINRCRIPVENALKDAKLDKSDID 330
Query: 631 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKD 690
+V+LVG TR+P +QE + K++G + ++++N DE A+GA +A L+ +VK + D
Sbjct: 331 EVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAG--EVKDILLLD 388
Query: 691 IVLYPIQVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIE 749
+ + V E+ G TKII R + T P KK F+ V D NV EI
Sbjct: 389 VTPLSLGV----ETLGGVMTKIIPR-----NTTIPTKKSEVFSTAV-DNQTNV----EIH 434
Query: 750 HLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNI 806
L E+ K + F + G+ A +G I+ F +D +GILS+
Sbjct: 435 VLQGERELAKDNKSLGTFRLDGIPPA----------PRGVPQIEVTFDIDANGILSVTAK 484
Query: 807 ELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKN------ 860
+ K+++ T+ S ++E + V E K A E +
Sbjct: 485 DKGTGKEQSI---------TIQ---GASTLPKDE--VERMVKEAEKNAAEDKEKREKIDL 530
Query: 861 VNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 920
N ES AE+ +K +KK KI + + R + N + ++ L +
Sbjct: 531 KNQAESLCYQAEKQLKELKDKISEEKKEKIENL-----IKKLRQALQNDNYESIKSLLEE 585
Query: 921 L 921
L
Sbjct: 586 L 586
Score = 89.4 bits (222), Expect = 4e-18
Identities = 67/210 (31%), Positives = 113/210 (53%), Gaps = 11/210 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
V+ +DLG+ VA++ G P I N E R TP++VA+ K G+ G+ A+ P
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIP-NAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N++ +G+ + + +++ Y + D + N+ + EE+ A +
Sbjct: 63 ENTFYSVKRFIGRKFSE-ISE--EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K E AS G+ + +AVI VP YFN +RQ+ AG++AGL+VL+++N+ TA +L Y
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
G+ K+ NET ++ +D+G + VSI
Sbjct: 180 GLDKKN--NET----ILVFDLGGGTFDVSI 203
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 151 bits (383), Expect = 2e-39
Identities = 112/407 (27%), Positives = 183/407 (44%), Gaps = 36/407 (8%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTR 341
V+ ++ G+ + +A ++ G IA N++ +R+ P+ +++H + G A Q+I R
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIA-NEDGERQIPSAISYHGEQEYHGNQAKAQLI--R 57
Query: 342 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD-----EERGTIVFKTNDNELYHV 396
N+ F DLLGK V + P V D +E+ V K + V
Sbjct: 58 NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKE---TILTV 114
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
E+ L + +E A G+ + AV+ VP +F+ + ++++KA E AGL VLQL+ +
Sbjct: 115 HEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEP 174
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
A L Y + + + V+ D G T VS+++ RG + T +L
Sbjct: 175 AAALLAYDAGEPTEDEALDRNVVVA-DFGGTRTDVSVIA-------VRGGLYT-----IL 221
Query: 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576
+D LGG + L K+F KKT D N RA+AKL E+ K LSA+
Sbjct: 222 ATAHDPGLGGDTLDDALVKHFAKEFT--KKTKTDPRTNARALAKLRAESEITKKTLSAST 279
Query: 577 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636
+E L + IDF + R FE L +F + V A+ + + I +V+LVG
Sbjct: 280 SATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVG 339
Query: 637 AGTRVPKVQEKI-------TKVVG-VELSKNLNTDEAAALGAVYKAA 675
PK+ + T + + +SK L+ E A G +A+
Sbjct: 340 GTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
Score = 87.8 bits (218), Expect = 3e-18
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 14/219 (6%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTR 94
V+ ++ G+ + +A ++ G IA N++ +R+ P+ +++H + G A Q+I R
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIA-NEDGERQIPSAISYHGEQEYHGNQAKAQLI--R 57
Query: 95 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD-----EERGTIVFKTNDNELYHV 149
N+ F DLLGK V + P V D +E+ V K + V
Sbjct: 58 NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKE---TILTV 114
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
E+ L + +E A G+ + AV+ VP +F+ + ++++KA E AGL VLQL+ +
Sbjct: 115 HEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEP 174
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
A L Y + + + V+ D G T VS+++
Sbjct: 175 AAALLAYDAGEPTEDEALDRN-VVVADFGGTRTDVSVIA 212
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 147 bits (373), Expect = 1e-38
Identities = 93/280 (33%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
EEL +++L +E A G+ + EAVI VP YFN +R++ +AGELAGLKV +L+N+
Sbjct: 85 EELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEP 144
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
TA AL YG KD V +D+G + VS++ G +E +
Sbjct: 145 TAAALAYG-LHDKDEETKFLV----FDLGGGTFDVSVLELF------DGVMEVR---ASA 190
Query: 517 GVGYDRTLGGLEM-QIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 575
G D LGG + + FL K + + D P +A+L + A R K LS
Sbjct: 191 G---DNYLGGEDFTRALAEAFLKK--HGLDFEKLD----PSELARLLRAAERAKRALSDQ 241
Query: 576 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
E A++ I+ + + +TR EFE + + L +R+ P+E+AL+ + + I ++ILV
Sbjct: 242 EE--AEMSVRIEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILV 299
Query: 636 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675
G TR+P V++ ++++ G +LN DE ALGA +A
Sbjct: 300 GGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQAG 339
Score = 79.5 bits (197), Expect = 1e-15
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
EEL +++L +E A G+ + EAVI VP YFN +R++ +AGELAGLKV +L+N+
Sbjct: 85 EELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEP 144
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 249
TA AL YG KD V +D+G + VS++
Sbjct: 145 TAAALAYG-LHDKDEETKFLV----FDLGGGTFDVSVLEL 179
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 148 bits (374), Expect = 1e-36
Identities = 182/639 (28%), Positives = 292/639 (45%), Gaps = 89/639 (13%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
++ +DLG+ VAI+ P I N E R TP++VAF + G+R G A+ P
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIE-NSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNP 101
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N+ L+G+ D + + PY + A I + Y ++ A +
Sbjct: 102 ENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWI---EAQGKKYSPSQIGAFV 158
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K +E A G+ + +AVI VP YFN +RQ+ AG++AGL VL+++N+ TA AL +
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K N+ + V YD+G + +SI+ G E V + +
Sbjct: 219 GMDK----NDGKTIAV--YDLGGGTFDISILEIL------GGVFE------VKATNGNTS 260
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEH 578
LGG + R+ ++L +F K+ D+ ++ A+ +L + A K LS+ N
Sbjct: 261 LGGEDFDQRILNYLIAEFK--KQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLP 318
Query: 579 F--AQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636
F A G + KL +RA+ E L DL + P E+ +K + V D ++ VILVG
Sbjct: 319 FITADQSG-PKHLQIKL--SRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVG 375
Query: 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPI 696
TR+PKV E + K+ G E SK +N DEA A+GA +A V K KD++L +
Sbjct: 376 GMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAG-------VLKGEIKDLLLLDV 428
Query: 697 -QVEFERESESGD-TKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPE 754
+ E+ G T++I R + T P KK F+ D V I+ E
Sbjct: 429 TPLSLGIETLGGVFTRLINR-----NTTIPTKKSQVFST-AADNQTQVG----IKVFQGE 478
Query: 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVV- 810
+ K + +FD+ G+ A +G I+ F +D +GI+++ ++
Sbjct: 479 REMAADNKLLGQFDLVGIPPA----------PRGVPQIEVTFDVDANGIMNISAVDKSTG 528
Query: 811 EKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNV----NSTES 866
+KQE T+ S S +E EK + EA E K +E K + N E+
Sbjct: 529 KKQEI----------TIQSSGGLSD-EEIEKMVKEA--EEYKEQDEKKKELVDAKNEAET 575
Query: 867 QQQSAEESVKN-ATQTPDADK---KPKIVTVKEPISASE 901
S E+ + + + DADK K KI ++ +S+ +
Sbjct: 576 LIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSED 614
Score = 93.7 bits (233), Expect = 2e-19
Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 11/211 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
++ +DLG+ VAI+ P I N E R TP++VAF + G+R G A+ P
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIE-NSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNP 101
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N+ L+G+ D + + PY + A I + Y ++ A +
Sbjct: 102 ENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWI---EAQGKKYSPSQIGAFV 158
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K +E A G+ + +AVI VP YFN +RQ+ AG++AGL VL+++N+ TA AL +
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247
G+ K N+ + V YD+G + +SI+
Sbjct: 219 GMDK----NDGKTIAV--YDLGGGTFDISIL 243
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 147 bits (372), Expect = 2e-36
Identities = 159/613 (25%), Positives = 265/613 (43%), Gaps = 69/613 (11%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
V+ VDLG+ + VA + + N E R TP++VAF E+ G A+ P
Sbjct: 29 VIGVDLGTTYSCVATMDGDKA-RVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQ 87
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
+++ L+G+ + +Q PY + A G + + + Y ++ A +L
Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGN--GDAWVQDGNGKQYSPSQIGAFVL 145
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K +E A G ++ AV+ P YFN +RQ+ AG +AGL V++++N+ TA AL YG
Sbjct: 146 EKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYG 205
Query: 465 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 524
+ K KD + YD+G + +S++ G E V D L
Sbjct: 206 MDKTKD------SLIAVYDLGGGTFDISVLEIA------GGVFE------VKATNGDTHL 247
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAG-RLKNVLSANNEHFAQIE 583
GG + + L D++ E +KT+ R + +EA + K LS+ E +
Sbjct: 248 GGEDFDLALSDYI---LEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLP 304
Query: 584 GLIDEID----FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
+ D ++ ++R++FE + + L +R P +Q +K + V + I+ V+LVG T
Sbjct: 305 FITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMT 364
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
R+PKV E++ K + + +N DEA ALGA L VK + D+ + +E
Sbjct: 365 RMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRG--DVKGLVLLDVTPLSLGIE 422
Query: 700 FERESESGDTKIIKRMLFGPSNT-YPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAM 758
G + RM+ P NT P KK TF+ D V I+ E+
Sbjct: 423 -----TLGG--VFTRMI--PKNTTIPTKKSQTFST-AADNQTQVG----IKVFQGEREMA 468
Query: 759 LGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEKQEA 815
+ + +FD+ G+ A +G I+ F +D +GI V K +A
Sbjct: 469 ADNQMMGQFDLVGIPPA----------PRGVPQIEVTFDIDANGICH------VTAKDKA 512
Query: 816 AESPLSKLGNTLTSLFSRSKTD-ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEES 874
T+T+ SK E +E E ++ E + N+ E+Q +AE
Sbjct: 513 TG---KTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQ 569
Query: 875 VKNATQTPDADKK 887
+ DA+K+
Sbjct: 570 LGEWKYVSDAEKE 582
Score = 87.4 bits (216), Expect = 2e-17
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 9/210 (4%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
V+ VDLG+ + VA + + N E R TP++VAF E+ G A+ P
Sbjct: 29 VIGVDLGTTYSCVATMDGDKA-RVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQ 87
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
+++ L+G+ + +Q PY + A G + + + Y ++ A +L
Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGN--GDAWVQDGNGKQYSPSQIGAFVL 145
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K +E A G ++ AV+ P YFN +RQ+ AG +AGL V++++N+ TA AL YG
Sbjct: 146 EKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYG 205
Query: 218 IFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247
+ K KD + YD+G + +S++
Sbjct: 206 MDKTKD------SLIAVYDLGGGTFDISVL 229
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 143 bits (363), Expect = 2e-35
Identities = 160/531 (30%), Positives = 256/531 (48%), Gaps = 67/531 (12%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
V+ +DLG+ VA++ G P+ I N E R TP++V F K G+R G+ A+
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIP-NSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N+ +G+ D + +SR PY + ++ + + + Y +E+ AM+
Sbjct: 63 ENTVYSIKRFIGRRWDDTEEE--RSRVPYTCVKGRDDTVNVQIRGRN---YTPQEISAMI 117
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K ++ A G+ + +AVI VP YF +RQ+ AG +AGL+VL+++N+ TA AL Y
Sbjct: 118 LQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY 177
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K +D + ++ +D+G + VSI+ G E V +
Sbjct: 178 GLDK-QDQEQ----LILVFDLGGGTFDVSILQLG------DGVFE------VKATAGNNH 220
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEH 578
LGG + + D+L + F + + D+ ++ A+ +L + A + K LS+ N
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEG--IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLP 278
Query: 579 FAQIEGLIDEIDFKLL---VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
F DE K L +TRA+FE L +DL + P++QALK + + + I +VILV
Sbjct: 279 FITA----DETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILV 334
Query: 636 GAGTRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLY 694
G TR+P VQE I K G + +++N DEA ALGA +A L G +VK + D+
Sbjct: 335 GGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL--GGEVKDLLLLDVT-- 390
Query: 695 PIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPE 754
P+ + E E TKII+R + T P K F+ D +V EI L E
Sbjct: 391 PLSLGIETLGEVF-TKIIER-----NTTIPTSKSQVFSTAT-DGQTSV----EIHVLQGE 439
Query: 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILS 802
+ K + KF ++G+ A +G I+ F +D +GIL
Sbjct: 440 RAMAKDNKSLGKFLLTGIPPA----------PRGVPQIEVSFEIDVNGILK 480
Score = 87.9 bits (218), Expect = 1e-17
Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 12/210 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
V+ +DLG+ VA++ G P+ I N E R TP++V F K G+R G+ A+
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIP-NSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N+ +G+ D + +SR PY + ++ + + + Y +E+ AM+
Sbjct: 63 ENTVYSIKRFIGRRWDDTEEE--RSRVPYTCVKGRDDTVNVQIRGRN---YTPQEISAMI 117
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K ++ A G+ + +AVI VP YF +RQ+ AG +AGL+VL+++N+ TA AL Y
Sbjct: 118 LQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY 177
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
G+ K +D + ++ +D+G + VSI
Sbjct: 178 GLDK-QDQEQ----LILVFDLGGGTFDVSI 202
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 142 bits (361), Expect = 4e-35
Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 41/394 (10%)
Query: 279 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 338
H +AV +DLG+ VA V G E+ +++ + P++V + + G +A+
Sbjct: 16 HQRRLAV-GIDLGTTNSLVATVRSGQA-EVLPDEQGRVLLPSVVRYLEDGIEVGYEARAN 73
Query: 339 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY--YDIVADEERGTIVFKTNDNELYHV 396
+ P N+ +G+S+ + R+P+ Y VA E G + +T V
Sbjct: 74 AAQDPKNTISSVKRFMGRSLADI-----QQRYPHLPYQFVASEN-GMPLIRTAQGLKSPV 127
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
E + A +L R+ A + G ++ AVI VP YF+ +RQ+ A LAGL VL+L+N+
Sbjct: 128 E-VSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEP 186
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
TA A+ YG+ D + V + YD+G + +SI+ +G E VL
Sbjct: 187 TAAAIAYGL----D-SGQEGVIAV-YDLGGGTFDISILRL------SKGVFE------VL 228
Query: 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576
G D LGG + L D++ +++ +P L A K LS
Sbjct: 229 ATGGDSALGGDDFDHLLADWI------LEQAGLSPRLDPEDQRLLLDAARAAKEALSDA- 281
Query: 577 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636
+E + ++ +TR +F AL L R +AL+ + V D + +V++VG
Sbjct: 282 ---DSVE--VSVALWQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVG 336
Query: 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670
TRVP V+E + + G +++ D+ A+GA
Sbjct: 337 GSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGA 370
Score = 79.1 bits (196), Expect = 6e-15
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 17/217 (7%)
Query: 32 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 91
H +AV +DLG+ VA V G E+ +++ + P++V + + G +A+
Sbjct: 16 HQRRLAV-GIDLGTTNSLVATVRSGQA-EVLPDEQGRVLLPSVVRYLEDGIEVGYEARAN 73
Query: 92 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY--YDIVADEERGTIVFKTNDNELYHV 149
+ P N+ +G+S+ + R+P+ Y VA E G + +T V
Sbjct: 74 AAQDPKNTISSVKRFMGRSLADI-----QQRYPHLPYQFVASEN-GMPLIRTAQGLKSPV 127
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
E + A +L R+ A + G ++ AVI VP YF+ +RQ+ A LAGL VL+L+N+
Sbjct: 128 E-VSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEP 186
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
TA A+ YG+ D + V + YD+G + +SI
Sbjct: 187 TAAAIAYGL----D-SGQEGVIAV-YDLGGGTFDISI 217
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 135 bits (342), Expect = 7e-34
Identities = 106/400 (26%), Positives = 191/400 (47%), Gaps = 33/400 (8%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT-PTLVAFHKGERTFGEDAQIIGTRFP 343
++ +DLG+ + V + G + E+ RK+ P++VAF G G A P
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV--EELVA 401
N+ +GK ++ R+ + + + G F NE V EE+ +
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRF-KVKINSRNGAFFFSVLTNETKTVTPEEIGS 140
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
L+ K R+ A G + +AVI VP F++ +R + +KA LAGL+VL+++N+ TA AL
Sbjct: 141 RLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAAL 200
Query: 462 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521
YG+ K++D +V+ D+G + VS+++ K+ G ++ G +
Sbjct: 201 AYGLHKKQDV-----FNVLVVDLGGGTLDVSLLN------KQGGMF-----LTRAMAGNN 244
Query: 522 RTLGGLEMQIRLRDFL----GKKFNEMKKTTKDVFENPRAV--AKLFKEAGRLKNVLSAN 575
R LGG + RL +L +K+ ++ +D+ +AV AK+ L S
Sbjct: 245 R-LGGQDFNQRLLQYLYQKIYEKYGKVPDNKEDIQRLRQAVEAAKI-----NLTLHPSTT 298
Query: 576 NEHFAQIEGLIDEI-DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL 634
+ + I F+ +TR EFE LNEDLF ++ P+E L + + + +++L
Sbjct: 299 ISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVL 358
Query: 635 VGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674
VG TR+P++++ I + G + + +++ + A G +A
Sbjct: 359 VGGSTRIPRIRQVIGRFFGKDPNTSVDPELAVVTGVAIQA 398
Score = 91.8 bits (228), Expect = 2e-19
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 9/216 (4%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT-PTLVAFHKGERTFGEDAQIIGTRFP 96
++ +DLG+ + V + G + E+ RK+ P++VAF G G A P
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV--EELVA 154
N+ +GK ++ R+ + + + G F NE V EE+ +
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRF-KVKINSRNGAFFFSVLTNETKTVTPEEIGS 140
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
L+ K R+ A G + +AVI VP F++ +R + +KA LAGL+VL+++N+ TA AL
Sbjct: 141 RLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAAL 200
Query: 215 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250
YG+ K++D +V+ D+G + VS+++ Q
Sbjct: 201 AYGLHKKQDV-----FNVLVVDLGGGTLDVSLLNKQ 231
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 90.7 bits (225), Expect = 1e-18
Identities = 132/592 (22%), Positives = 234/592 (39%), Gaps = 107/592 (18%)
Query: 277 FEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 336
F+ IAV +D G+ +AI + +++ + + K PT + F T G +
Sbjct: 14 FKQERQIAV-GIDFGTTNSLIAI-ATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNKG 71
Query: 337 IIGTRFPSNSYGYFLDLLGKS----IDSPVV-QLFKSRFPYYDIVADEERGTIVFKTNDN 391
+ + L GK+ +++P + L K Y D+ + E + K
Sbjct: 72 LRSIK----------RLFGKTLKEILNTPALFSLVKD---YLDVNSSELKLNFANKQ--- 115
Query: 392 ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQ 451
+ E+ A + + A I +AVI VP +FN R ++ A ++AG +VL+
Sbjct: 116 --LRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLR 173
Query: 452 LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 511
L+ + TA A YG+ K N+ V YD+G + VSI + +E F
Sbjct: 174 LIAEPTAAAYAYGLNK----NQKGCYLV--YDLGGGTFDVSI-----LNIQEGIF----- 217
Query: 512 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKF--NEMKKTTKDVFENPRAVAKLFKEAGRLK 569
V+ D LGG ++ + + +L KF T + +AK KE L
Sbjct: 218 --QVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQ--------LAKKAKET--LT 265
Query: 570 NVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVI 629
S NN+ + + + E L L +R ++ L+ + P I
Sbjct: 266 YKDSFNND--------------NISINKQTLEQLILPLVERTINIAQECLEQAGNPN--I 309
Query: 630 SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITK 689
VILVG TR+P +++++ K V++ +++ D+A GA +A +L I
Sbjct: 310 DGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLI-- 367
Query: 690 DIVLYPIQVEFERESESGDTKIIKRMLFGPSNT-YPQKKILTFNKYVGD---FNFNVSYA 745
D+V + +E G + I NT P + F Y + F++
Sbjct: 368 DVVPLSLGMEL----YGGIVEKII-----MRNTPIPISVVKEFTTYADNQTGIQFHI--- 415
Query: 746 SEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSL-- 803
L E+ + +++F++ G+ A S + FA+D GILS+
Sbjct: 416 -----LQGEREMAADCRSLARFELKGLPPM-------KAGSIRAEVTFAIDADGILSVSA 463
Query: 804 ----VNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGN 851
N +E + +++ L + + +K D + + EAV E
Sbjct: 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAE 515
Score = 57.2 bits (138), Expect = 4e-08
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 36/235 (15%)
Query: 30 FEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 89
F+ IAV +D G+ +AI + +++ + + K PT + F T G +
Sbjct: 14 FKQERQIAV-GIDFGTTNSLIAI-ATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNKG 71
Query: 90 IIGTRFPSNSYGYFLDLLGKS----IDSPVV-QLFKSRFPYYDIVADEERGTIVFKTNDN 144
+ + L GK+ +++P + L K Y D+ + E + K
Sbjct: 72 LRSIK----------RLFGKTLKEILNTPALFSLVKD---YLDVNSSELKLNFANKQ--- 115
Query: 145 ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQ 204
+ E+ A + + A I +AVI VP +FN R ++ A ++AG +VL+
Sbjct: 116 --LRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLR 173
Query: 205 LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-----YQVVKT 254
L+ + TA A YG+ K N+ V YD+G + VSI++ +QV+ T
Sbjct: 174 LIAEPTAAAYAYGLNK----NQKGCYLV--YDLGGGTFDVSILNIQEGIFQVIAT 222
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 47.5 bits (114), Expect = 3e-05
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 561 LFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALK 620
L + K LS+ +E +I+ E+ + VTRAEFE +R+ V++AL
Sbjct: 303 LARAVEAAKIALSSQDET--RIDLDFVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALA 360
Query: 621 SSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 653
+ V D I +V L G + VP V++
Sbjct: 361 QAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFP 393
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 39.7 bits (94), Expect = 0.009
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 44/173 (25%)
Query: 922 DSLNQIEHAKVRKEKALNSLES-----LLFDAKSKLELEEYSSVAAPNESKTIV--DKID 974
++ +++E + E++ ++E L+ DA L E+ + + IV +K D
Sbjct: 275 ETDDEVEKIGI--ERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKAD 332
Query: 975 EITNWLEEDGWNAEA-----------DVLENKLNEI--------NSLVVPIWERHREHQE 1015
E+ D L + E+ V RH E E
Sbjct: 333 LTGEIDLEEENGKPVIRISAKTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALE 392
Query: 1016 RPEALKSLNNALN----------VSVTFYNSIKNLSLNTNE--TEDL--NLFS 1054
R AL+ L AL ++ +++ L T E +EDL +FS
Sbjct: 393 R--ALEHLERALEGLESGLPLELLAEDLRLALEALGEITGEVTSEDLLDRIFS 443
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 38.1 bits (89), Expect = 0.030
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 596 TRAEFE----ALNEDLFDRVGYPVEQALK-SSAVPMDVISQVILVGAGTRVPKVQEKITK 650
TRA E AL + L L+ + +P I + L+G G + P ++ +
Sbjct: 365 TRAVLEGVTFALRDSL---------DILREAGGIP---IQSIRLIGGGAKSPAWRQMLAD 412
Query: 651 VVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
+ G + +E ALGA AA + ++ +V V
Sbjct: 413 IFGTPVDV-PEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVL 460
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 38.1 bits (89), Expect = 0.030
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFI 687
+++ L+G G + P ++ I ++ E+ +T+EAAALGA +AA TG
Sbjct: 394 KSTEIRLIGGGAKSPAWRQIIADIMNAEVVV-PDTEEAAALGAAIQAAWCLTGEDGADVA 452
Query: 688 TKDIVLYPIQV 698
++ +++
Sbjct: 453 LAELCDELVEL 463
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 36.6 bits (85), Expect = 0.039
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 1119 SIVEKIRALEREVRYLENKSKLWMASLN--KKKESTSKKKEDKPKNKDSDKTKPSETEQS 1176
+K + L E+ K K K K+ SKKK+DK K+K DK ++
Sbjct: 59 EAKKKKKELAEEI----EKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Query: 1177 -KPEEQPAGDQEPLTPKPSPSPVDET 1201
K E D + + +
Sbjct: 115 EKEAEDKLEDLTKSYSETLSTLSELK 140
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 35.0 bits (81), Expect = 0.18
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 1157 EDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTP 1204
E +P + K KP E + KP+ Q + P PKP P PV E
Sbjct: 98 EPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP-APKPEPKPVVEEKAA 144
>gnl|CDD|233844 TIGR02392, rpoH_proteo, alternative sigma factor RpoH. A sigma
factor is a DNA-binding protein protein that binds to
the DNA-directed RNA polymerase core to produce the
holoenzyme capable of initiating transcription at
specific sites. Different sigma factors act in
vegetative growth, heat shock, extracytoplasmic
functions (ECF), etc. This model represents the clade of
sigma factors called RpoH and further restricted to the
Proteobacteria. This protein may be called sigma-32,
sigma factor H, heat shock sigma factor, and alternative
sigma factor RpoH. Note that in some species the single
locus rpoH may be replaced by two or more differentially
regulated stress response sigma factors [Cellular
processes, Adaptations to atypical conditions,
Transcription, Transcription factors].
Length = 270
Score = 34.2 bits (79), Expect = 0.30
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 751 LNPEQIAMLGTK-QISKFDV-------SGVSEAFGKHNEENAESKGIKAHFAMDESGILS 802
LNPE++ + + +S+ +V SG + +++ + G + +D+
Sbjct: 137 LNPEEVEAIAEELGVSEREVREMESRLSGQDMSLNASIDDDEDDGGAPIAYLVDKRS--- 193
Query: 803 LVNIELVVEKQEAAESPLSKLGNTLTSLFSRS-------KTDENEKPINEAVDEGNKTAE 855
+ E +E+++ E L N L SL +RS D+++ + E E +AE
Sbjct: 194 --DPEDTLEEEQWEELQRQALANALGSLDARSRRIIEARWLDDDKLTLQELAAEYGVSAE 251
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 32.7 bits (73), Expect = 0.32
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 1133 YLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQE 1187
++ N+ ++ + KKE+ +KK +KP+N+D K + E E K E+P + E
Sbjct: 45 FISNEDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDE 99
>gnl|CDD|145556 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This family
represents the phosphoprotein of Paramyxoviridae, a
putative RNA polymerase alpha subunit that may function
in template binding.
Length = 266
Score = 33.7 bits (77), Expect = 0.47
Identities = 14/68 (20%), Positives = 22/68 (32%)
Query: 1143 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETT 1202
S++ +K +T +K + P K + D E + KP D T
Sbjct: 32 QSISGEKVNTISEKFELPTISKPTTPKGPCIKDEIISVNKVKDIESIYEKPVTPTSDGKT 91
Query: 1203 TPEDKTKT 1210
E T
Sbjct: 92 PTEKSDDT 99
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 34.1 bits (78), Expect = 0.51
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 1099 KSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKED 1158
+EK + + +K + I +K RA ERE+ + + + + + + K K+
Sbjct: 337 TAEKNEAKARK--------KEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKK 388
Query: 1159 KPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVD 1199
+ ++ PSE E+SK P PS D
Sbjct: 389 GLIDASPNEDTPSENEESKGSPPQVEATTTAEPNREPSQED 429
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 34.0 bits (77), Expect = 0.59
Identities = 86/408 (21%), Positives = 149/408 (36%), Gaps = 62/408 (15%)
Query: 811 EKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEA--VDEGNKTAEEPSK--NVNSTES 866
E ++ AE K + ++ K DE +K E DE K AEE K
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
Query: 867 QQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQ 926
+ + AEE+ K A + AD+ K +E A E + K+ E++ K D +
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKK--KAEEAKKADEAK--------KKAEEAKKKADEAKK 1504
Query: 927 IEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWN 986
AK + ++A + E+ D K E + + A E K K DE+ E
Sbjct: 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK---KADELKKAEELKKAE 1561
Query: 987 AEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNA-LNVSVTFYNSIKNLSLNTN 1045
+ E K E E + E K A + + Y K +
Sbjct: 1562 EKKKAEEAKKAE---------EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM----- 1607
Query: 1046 ETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQN 1105
+ E+ + ++K+ + K+ + + + K + + +K+
Sbjct: 1608 KAEEAKKAEEAKIKAEE-----------------LKKAEEEKKKVEQLKKKEAEEKKKAE 1650
Query: 1106 QLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDS 1165
+LKK++ KI+A E + E+K K A KK E KK + K +
Sbjct: 1651 ELKKAEE--------ENKIKAAEEAKKAEEDKKK---AEEAKKAEEDEKKAAEALKKEAE 1699
Query: 1166 DKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETT--TPEDKTKTE 1211
+ K E ++ + EE+ ++ + + +E EDK K E
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
Score = 32.8 bits (74), Expect = 1.7
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 835 KTDENEKPINEA---VDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIV 891
K DE +K EA D K AEE K + +++ ++A + + A + +A +K K
Sbjct: 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
Query: 892 TVKEPISASETRYGVSTLNE--KQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAK 949
K+ +A + +E K+ E+ K D L + AK + ++A E +
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 950 SKLELEE 956
+K + EE
Sbjct: 1436 AKKKAEE 1442
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 33.1 bits (76), Expect = 0.62
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 1154 KKKEDKPKNKDSDKTKP--SETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKT 1208
K E KPK K K KP EQ K E +P + P +P + +P T++
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR-PASPFENTAPARPTSSTATAA 148
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 33.5 bits (77), Expect = 0.66
Identities = 13/70 (18%), Positives = 24/70 (34%)
Query: 1142 MASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDET 1201
+ + KKEDK K + ++ K E + G+ + P S +
Sbjct: 45 EENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKK 104
Query: 1202 TTPEDKTKTE 1211
P+ K +
Sbjct: 105 KPPKPKPNED 114
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that may
also include truncated forms and/or pseudogenes. Members
are predicted lipoproteins with a conserved signal
peptidase II processing and lipid attachment site. Note
that the name for certain characterized members, p72,
reflects an anomalous apparent molecular weight, given a
theoretical MW of about 61 kDa.
Length = 541
Score = 33.7 bits (77), Expect = 0.76
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 1149 KESTSKKKEDKPKNKDSDKT-----KPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTT 1203
S SK+ E KP+ K ++ T KP E S+ + ++ PS + ++
Sbjct: 27 TSSNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPD 86
Query: 1204 PEDKTKT 1210
P +
Sbjct: 87 PSKNKEE 93
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 33.5 bits (77), Expect = 0.79
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 1143 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETT 1202
A K +KPK P + P + KP P+PV
Sbjct: 128 APAAAAAAKAEKTTPEKPKAAAPTPEPP-AASKPTPPAAAKPPEPAPAAKPPPTPVARAD 186
Query: 1203 TPE 1205
E
Sbjct: 187 PRE 189
Score = 32.3 bits (74), Expect = 1.5
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 1154 KKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKT 1210
P + K +T KP+ + P KP+P + P K
Sbjct: 123 APPAAAPAAAAAAK--AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKP 177
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.9 bits (78), Expect = 0.79
Identities = 23/82 (28%), Positives = 36/82 (43%)
Query: 1098 EKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKE 1157
EK EKE +LK + P + + + + ALE + E + +K K SK ++
Sbjct: 1112 EKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRK 1171
Query: 1158 DKPKNKDSDKTKPSETEQSKPE 1179
K K K+ K K S + K
Sbjct: 1172 PKLKKKEKKKKKSSADKSKKAS 1193
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 33.5 bits (76), Expect = 0.81
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 1069 FRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALE 1128
F + G+ F +Q T N++ V K+K + + K LT+ E LE
Sbjct: 16 FSIIGGYVFFTSQQTT---TSENKSAVSKKKKPTVKKEKPKQSSNNLTLGKNKENFH-LE 71
Query: 1129 R-------EVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ 1181
+ +V + ++ ++ +SL + E K K + K ++ KP ++ KPE+
Sbjct: 72 KGFGNKQLQVERIIDR--IFQSSLKNRTEIKVKPKNNPQKKQNIKPVKPIPSKPEKPEDS 129
Query: 1182 PA 1183
P+
Sbjct: 130 PS 131
Score = 30.0 bits (67), Expect = 9.6
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 1135 ENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQ---EPLTP 1191
ENKS +++KKK+ T KK+ KPK ++ T E E+ Q E +
Sbjct: 34 ENKS-----AVSKKKKPTVKKE--KPKQSSNNLTLGKNKENFHLEKGFGNKQLQVERIID 86
Query: 1192 KPSPSPVDETTTPEDKTK 1209
+ S + T + K K
Sbjct: 87 RIFQSSLKNRTEIKVKPK 104
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This protein,
which interacts with both microtubules and TRAF3 (tumour
necrosis factor receptor-associated factor 3), is
conserved from worms to humans. The N-terminal region is
the microtubule binding domain and is well-conserved; the
C-terminal 100 residues, also well-conserved, constitute
the coiled-coil region which binds to TRAF3. The central
region of the protein is rich in lysine and glutamic acid
and carries KKE motifs which may also be necessary for
tubulin-binding, but this region is the least
well-conserved.
Length = 506
Score = 33.3 bits (76), Expect = 0.83
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 1097 KEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKK 1156
K++ KE+ + +K R EK + E++V ++ + + K K
Sbjct: 120 KKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPP 179
Query: 1157 EDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDE 1200
+ KP NK + + E+Q +E + KP V+E
Sbjct: 180 KKKPPNKKKEP--------PEEEKQRQAAREAVKGKPEEPDVNE 215
Score = 30.2 bits (68), Expect = 6.9
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 1148 KKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDK 1207
T KE K ++ K + E EQ K EE+ ++P P +E
Sbjct: 88 PAAKTKPAKEPKNESG---KEEEKEKEQVK-EEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Query: 1208 TKTE 1211
+ E
Sbjct: 144 KEKE 147
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is a
family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 33.2 bits (76), Expect = 0.91
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 1143 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQS---------KPEEQPAGDQEP-LTPK 1192
+ + +SK E + + KP ++ +S P + ++EP TP
Sbjct: 59 PGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPD 118
Query: 1193 PSPS 1196
P S
Sbjct: 119 PIAS 122
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is involved
in determining the site of synaptic vesicle fusion. The
C-terminus is a PDZ-binding motif that binds directly to
RIM (a small G protein Rab-3A effector). The family also
contains four coiled-coil domains.
Length = 774
Score = 33.4 bits (76), Expect = 0.92
Identities = 78/393 (19%), Positives = 145/393 (36%), Gaps = 39/393 (9%)
Query: 805 NIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNST 864
IE + E E L + L SL + + TD + + +A+ E + E + +
Sbjct: 400 KIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRD 459
Query: 865 ESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASET-----RYGVSTLNEKQVEKSLS 919
E +Q E+ K + D K ++ ++ +S E + VS L Q K S
Sbjct: 460 ERYEQEEFETYKKEFE----DLKEEVQNLQLKLSERELQLELLKEEVSKLASNQ-LKQRS 514
Query: 920 KLDSLN-QIEHAKVRKEKALNSLESLLFDAKSK-----LELEEYSSVAAPNESKTIVDKI 973
L+ + ++E + + EK L+ L + +S ++ S A ++ VD++
Sbjct: 515 DLERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVDRL 574
Query: 974 DEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTF 1033
+ E+ E D E + + + + QE+ EA + + +
Sbjct: 575 LDRLEKAEQ-----ERDDTEMEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELL- 628
Query: 1034 YNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINET 1093
+ L + E E L + I + + V K + L L E
Sbjct: 629 -EEAERLEKSEAEEETLRQSTQIGHAQAAAHNHIEHHV--------QKLESDLKQLRAER 679
Query: 1094 KVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMAS-----LNKK 1148
+ + EK Q L + + E+ + LE E R L+ ++ L S +
Sbjct: 680 EQLVAQLEKSQQSLMEFQQELNAAE--AERRKHLE-ENRELKQEALLAAISEKDANIALL 736
Query: 1149 KESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ 1181
+ S SKKK+ + + + K EQ K + Q
Sbjct: 737 ELSASKKKKTQEEVALLRREKDKLVEQLKDQTQ 769
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends to
by Lys/Arg-rich, and is followed by a membrane-spanning
region. This is followed by an acidic low-complexity
region of variable length and a well-conserved C-terminal
domain of two tandem regions matched by pfam05036
(Sporulation related repeat), found in several cell
division and sporulation proteins. The role of FtsN as a
suppressor for other cell division mutations is poorly
understood; it may involve cell wall hydrolysis [Cellular
processes, Cell division].
Length = 298
Score = 32.7 bits (74), Expect = 0.95
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 7/124 (5%)
Query: 1084 KGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMA 1143
G++ T ++ E+ Q ++ ++ ++ T S E+ A+E + E K +
Sbjct: 106 GGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPS--EQTVAVEARKQTAEKKPQKART 163
Query: 1144 SLNKKKE-----STSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPV 1198
+ +K SK KE K K K K SKP E + KP P
Sbjct: 164 AEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPKEK 223
Query: 1199 DETT 1202
E
Sbjct: 224 AERA 227
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional.
Length = 482
Score = 33.0 bits (76), Expect = 1.0
Identities = 19/82 (23%), Positives = 38/82 (46%)
Query: 1100 SEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDK 1159
+E+E L S I+ IVEK E + + K +++E +KKE++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 1160 PKNKDSDKTKPSETEQSKPEEQ 1181
+ ++ + + E E+ K ++Q
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKKQ 476
Score = 29.9 bits (68), Expect = 8.5
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 1128 EREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQE 1187
E E+ +L K KK + +K E K + + +K K + + K EE+ ++
Sbjct: 396 EEEIEFLTGSKKA-----TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Query: 1188 PLTPKPSPSPVDETTTPEDKTK 1209
K E E++ K
Sbjct: 451 KEEEKEEEEEEAEEEKEEEEEK 472
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1, of
polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 32.9 bits (75), Expect = 1.1
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 1094 KVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTS 1153
K +S ++ ++S + + + L+ + E K + ++ E
Sbjct: 232 KKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKE 291
Query: 1154 KKKED---KPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKT 1210
K+K K + + + +S EE+ + + EP P + E+ T +
Sbjct: 292 KEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEP------PPLPKKEEEKEEVTVS 345
Score = 29.8 bits (67), Expect = 9.0
Identities = 8/64 (12%), Positives = 16/64 (25%)
Query: 1147 KKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPED 1206
K++ + T + SKP + + + + TT E
Sbjct: 136 KRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEK 195
Query: 1207 KTKT 1210
Sbjct: 196 TEGK 199
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are RNase
Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in turnover
of yitJ riboswitch [Transcription, Degradation of RNA].
Length = 514
Score = 33.0 bits (76), Expect = 1.2
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 1074 GFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRA-LEREVR 1132
G+ +K L + K E+++KE LKK +L + V K+RA LERE++
Sbjct: 15 GYLLRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKE--ALLEAKEEVHKLRAELERELK 72
Query: 1133 YLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEE 1180
E +++L ++ E ++E+ K K E + K +E
Sbjct: 73 --ERRNEL------QRLERRLLQREETLDRKMESLDKKEENLEKKEKE 112
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 32.6 bits (74), Expect = 1.2
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 1164 DSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSP 1197
D+T+P E++ P PA E P P
Sbjct: 408 AHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDP 441
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 31.9 bits (72), Expect = 1.3
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 1099 KSEKEQNQLKKSDPIVLTIRSIVEKI-RALEREVRYLENKSKLWMASLNKKKESTSKKKE 1157
K KE + L+ ++++ ++ +I R LE K + ++ LN+ K K K
Sbjct: 92 KKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKP-VQLSDLNRLKPHMMKTKS 150
Query: 1158 DKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPS 1196
K ++ +K + E + + E+Q Q+P +
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQ 189
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 32.0 bits (73), Expect = 1.4
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 1147 KKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTT 1203
+K+ + S+ KEDK + D+ E E+ E ++E T + + S V++ T
Sbjct: 69 EKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE--TEEKTESNVEKEIT 123
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 32.9 bits (75), Expect = 1.4
Identities = 93/526 (17%), Positives = 175/526 (33%), Gaps = 97/526 (18%)
Query: 759 LGTKQISKFDVSGVSEAFGKHNEENA---ESKGIKAHFAMDESGILSLVNIELVVEKQEA 815
KQ+S + ++ + +A +E + S+ I + + I + + +
Sbjct: 2139 FDEKQVSNYILTNIDKANKLSSELSEAVTNSEEIIENIKKEIIEINENTEMNTLENTADK 2198
Query: 816 AESPLSKLGNTLTSLFSRSKTDENEKPINEA-VDEGNKTAE------EPSKNVNSTESQQ 868
+ L + + K IN + E ++E + NV T+ ++
Sbjct: 2199 LKELYENLKKKKNII------NNIYKKINFIKLQEIENSSEKYNDISKLFNNVVETQKKK 2252
Query: 869 QSAEESVKNATQTPDADKKPKIVTVK-----EPISASETRYGVSTLNEKQVEKSLSKLDS 923
++ N + DK+ +++ V E I Y N + K L+
Sbjct: 2253 LLDNKNKINNIKDKINDKEKELINVDSSFTLESIKTFNEIYDDIKSNIGDLYK----LED 2308
Query: 924 LNQIEHAKVRKEKA-----LNSLESLLFDAKSKLELEEY---SSVAAPNESKTIVDKIDE 975
N E KV+ LN + +L+ D + E Y ++ NE+ + + K E
Sbjct: 2309 TNNDELKKVKLYIENITHLLNRINTLINDLD-NYQDENYGKDKNIELNNENNSYIIKTKE 2367
Query: 976 ITNWLEEDGWNAEADVLEN----KLNEINSLVVPIWERHREHQERPEALKSLNNALNVSV 1031
N L+E+ ++ N N I + I + ++R + L+
Sbjct: 2368 KINNLKEEFSKLLKNIKRNNTLCNNNNIKDFISNIGKSVETIKQRFSSNLPEKEKLHQIE 2427
Query: 1032 TFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLIN 1091
N IKN+ T +++ F++ L+ +D + +D LI
Sbjct: 2428 ENLNEIKNIMNETKRISNVDAFTNKILQDIDNEKNKENNN---------MNAEKIDDLIE 2478
Query: 1092 ETKVWKEKSEKE------------------------------------QNQLKKSDPIVL 1115
EK + E +N + S I+
Sbjct: 2479 NVTSHNEKIKSELLIINDALRRVKEKKDEMNKLFNSLTENNNNNNNSAKNIVDNSTYIIN 2538
Query: 1116 TIRSIVEKIRAL----EREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPS 1171
+ S V K+ L + E++ LEN+ + K E + K++E D T
Sbjct: 2539 ELESHVSKLNELLSYIDNEIKELENEKLKLLE--KAKIEESRKERERIESETQEDNTDEE 2596
Query: 1172 ------ETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 1211
+ K EEQ A QE L + S + D+T + E
Sbjct: 2597 QINRQQQERLQKEEEQKAYSQERLNREVSGT--DDTNKNHNTGHDE 2640
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 32.5 bits (75), Expect = 1.5
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 608 FDRVGYPVEQALKSSAVPMDVISQVILVGA 637
+R+ Y EQAL + + ++LVGA
Sbjct: 246 VERLPYFAEQALAQ----LAGVRHLVLVGA 271
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and is
typically between 384 and 430 amino acids in length.
Length = 414
Score = 32.5 bits (74), Expect = 1.6
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 1142 MASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQS---KPEEQPAGDQEPLTPKPSPSPV 1198
S ++S++ K + K +K P +T + PE P +E K SPS +
Sbjct: 244 ETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLL 303
Query: 1199 DETTTPE 1205
+ E
Sbjct: 304 SPSPKAE 310
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 32.5 bits (74), Expect = 1.6
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 1144 SLNKKKESTSKKKEDKPKNKDSDKT-KPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETT 1202
S N K STS K+ + PK +++ ++ + ++ + D + ++ S +D+ +
Sbjct: 178 SSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYS 237
Query: 1203 TPEDKTKTE 1211
ED KT+
Sbjct: 238 --EDAKKTQ 244
>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional.
Length = 90
Score = 30.1 bits (68), Expect = 1.6
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 823 LGNTLTSLFSRSKTDENE--KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEES 874
LG TL SK ENE + + E E AE S N +Q AE S
Sbjct: 34 LGKTLKGFQEASKEFENEIKREMAEPEQEVKAPAELESNQTNEANQEQVDAENS 87
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein. This
family consists of several Neisseria meningitidis TspB
virulence factor proteins.
Length = 502
Score = 32.3 bits (73), Expect = 1.9
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 1167 KTKPSETEQSKPEEQPAGDQEPLT-PKPSPSPVDETTTPEDKT 1208
+ P + P P + P T P P P P D T
Sbjct: 330 QPLPEVSPAENPANNPNPRENPGTRPNPEPDP-DLNPDANPDT 371
Score = 30.7 bits (69), Expect = 5.6
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 1151 STSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKT 1210
+ + P+ + P P+ P D +P T SP+ D K +
Sbjct: 338 AENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRPNGRHRKERK 397
Query: 1211 E 1211
E
Sbjct: 398 E 398
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 32.3 bits (74), Expect = 2.0
Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 49/221 (22%)
Query: 914 VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKI 973
++ + +L+ L I+ + EKAL LES+L K E + E K +++ +
Sbjct: 280 YQELIEQLEEL--IDKYESHIEKALEELESILDTEKENSEFKLDVE-----ELKALLEAL 332
Query: 974 DEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTF 1033
+EI + LE KL + ++ + + E++ + +A+N +
Sbjct: 333 EEILEKNLQ--------KLEEKLKDPSTSIELE-----SITDLIESINDIIDAINELIRE 379
Query: 1034 YNS-IKNLSLNTNE-TEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLIN 1091
+N I NL N+ + L L + L K+ KGL+ IN
Sbjct: 380 HNEKIDNLKKEKNKAKKKLWLH---LVAELK-----------EDIDAYQKEKKGLEKAIN 425
Query: 1092 ETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVR 1132
+ ++ E E I+++ ++I+ LE+++
Sbjct: 426 SLEKEIKQLEAE-------------IKALEKEIKELEKQLT 453
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.7 bits (72), Expect = 2.1
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 1140 LWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVD 1199
L + + E +++ KP + +P+ + + + + PKP P P
Sbjct: 49 LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEK-KPKKPKPKPKPKPKP 107
Query: 1200 ETTTPE 1205
+
Sbjct: 108 KPKVKP 113
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 31.6 bits (73), Expect = 2.2
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
E ++ + K + + VI VP ++ER++++ A AG + + L+ +
Sbjct: 72 EAMLRYFIKKVKGRSLFF----RPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEP 127
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
A A+ G+ + P M D+G +T ++++S
Sbjct: 128 LAAAIGAGL------DIFEPKGNMVVDIGGGTTEIAVIS 160
Score = 31.6 bits (73), Expect = 2.2
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
E ++ + K + + VI VP ++ER++++ A AG + + L+ +
Sbjct: 72 EAMLRYFIKKVKGRSLFF----RPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEP 127
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495
A A+ G+ + P M D+G +T ++++S
Sbjct: 128 LAAAIGAGL------DIFEPKGNMVVDIGGGTTEIAVIS 160
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises non-enzymatically
over time as a form of protein damage. In this
isomerization, the connectivity of the polypeptide
changes to pass through the beta-carboxyl of the side
chain. Much but not all of this damage can be repaired
by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two such
enzymes in E. coli, an enzyme that degrades isoaspartyl
dipeptides and may unblock degradation of proteins that
cannot be repaired. This model also describes closely
related proteins from other species (e.g. Clostridium
perfringens, Thermoanaerobacter tengcongensis) that we
assume to be equivalent in function. This family shows
homology to dihydroorotases [Protein fate, Degradation
of proteins, peptides, and glycopeptides].
Length = 389
Score = 31.7 bits (72), Expect = 2.2
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 256 ERGMKISLVTLCSSVVLLLTLFEHS---YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNK 312
E G+ + VT S F+ + G+ V S + E ++ A+ VP+E AL
Sbjct: 273 EAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVREAVKDGDVPLEKALRV 332
Query: 313 ESKRKTPTLVAFHKGERTFGEDAQII 338
+ L KGE + G DA ++
Sbjct: 333 ITSNVAGVLNLTGKGEISPGNDADLV 358
>gnl|CDD|215126 PLN02204, PLN02204, diacylglycerol kinase.
Length = 601
Score = 31.8 bits (72), Expect = 2.4
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 1100 SEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKED- 1158
SE E+ + + K R+ E EV YLE +S+ AS +K + KK E
Sbjct: 392 SESEKYRWMGPKRYDYAGTKVFLKHRSYEAEVAYLETESEKSKASSEARKRTGPKKSEKI 451
Query: 1159 ------KPKNKDSDKTKPSETEQSKPEEQ 1181
N PS T S PEE
Sbjct: 452 VCRTNCSVCNTKVSTNSPSTTPNSCPEET 480
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein (parp)
genes of Trypanosoma brucei encode a small family of
abundant surface proteins whose expression is restricted
to the procyclic form of the parasite. They are found at
two unlinked loci, parpA and parpB; transcription of both
loci is developmentally regulated.
Length = 145
Score = 30.7 bits (68), Expect = 2.5
Identities = 13/75 (17%), Positives = 30/75 (40%)
Query: 1137 KSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPS 1196
K K + ++ +D+P+ ++ + + E+ +PEE+ + EP
Sbjct: 41 KGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEP 100
Query: 1197 PVDETTTPEDKTKTE 1211
+ PE + + E
Sbjct: 101 EPEPEPEPEPEPEPE 115
Score = 29.5 bits (65), Expect = 6.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 1157 EDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLT-----PKPSPSPVDE 1200
E +P+ + ++ +P E + +PE + G++EP P+P P P E
Sbjct: 69 EPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPE 117
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 31.7 bits (72), Expect = 2.5
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 1152 TSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 1211
T +++ED K KD + + K + P +E KP+ SP + + P +
Sbjct: 187 TVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSG 246
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 31.9 bits (72), Expect = 2.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1152 TSKKKEDKPKN-KDSDKTKPSETEQSKPEEQPAGDQEPLTPKPS-PSPVDETT 1202
T K K K S ++ +E QS PE DQ + +P+ +PV+ TT
Sbjct: 423 TPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVEHTT 475
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 31.7 bits (72), Expect = 2.7
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 1165 SDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 1211
+ +E EQ+ P E A ++ T P + P E
Sbjct: 34 TTPATSTEAEQTTPVESDATEEADNTETPVAA-TTAAEAPSSSETAE 79
>gnl|CDD|198341 cd10308, GST_C_eEF1b_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of eukaryotic
translation Elongation Factor 1 beta. Glutathione
S-transferase (GST) C-terminal domain family, eukaryotic
translation Elongation Factor 1 beta (eEF1b) subfamily;
eEF1b is a component of the eukaryotic translation
elongation factor-1 (EF1) complex which plays a central
role in the elongation cycle during protein
biosynthesis. EF1 consists of two functionally distinct
units, EF1A and EF1B. EF1A catalyzes the GTP-dependent
binding of aminoacyl-tRNA to the ribosomal A site
concomitant with the hydrolysis of GTP. The resulting
inactive EF1A:GDP complex is recycled to the active GTP
form by the guanine-nucleotide exchange factor EF1B, a
complex composed of at least two subunits, alpha and
gamma. Metazoan EFB1 contain a third subunit, beta.
eEF1b contains a GST_C-like alpha helical domain at the
N-terminal region and a C-terminal guanine nucleotide
exchange domain. The GST_C-like domain likely functions
as a protein-protein interaction domain, similar to the
function of the GST_C-like domains of EF1Bgamma and
various aminoacyl-tRNA synthetases (aaRSs) from higher
eukaryotes.
Length = 82
Score = 29.3 bits (66), Expect = 2.8
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 574 ANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDR---VGYPVEQA 618
++H + G+ + F L T EALNE L DR GY QA
Sbjct: 6 TESKH-KLLLGVSLDGSFADLKTDKGLEALNEYLADRSYISGYSPSQA 52
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins in
this family for which functions are known are components
of a multiprotein complex used for targeting nucleotide
excision repair to specific parts of the genome. In
humans, Rad23 complexes with the XPC protein. This family
is based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 378
Score = 31.4 bits (71), Expect = 3.0
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 1116 TIRSIVEKIRALEREVRYLENKSKLWMASLNKKKEST---SKKKED--------KPKNKD 1164
T++ + EKI A + + Y + KL + + T K KE KPK
Sbjct: 22 TVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVKEYKIKEKDFVVVMVSKPKTGT 81
Query: 1165 SDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 1211
P+ T S P P+ P +P S + E E
Sbjct: 82 GKVAPPAATPTSAPTPTPS---PPASPASGMSAAPASAVEEKSPSEE 125
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754).
This is a eukaryotic protein family of unknown function.
Length = 90
Score = 29.3 bits (66), Expect = 3.2
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 1145 LNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTP 1204
L KK KKK+ K K S + +E E+ + + +E + + E
Sbjct: 12 LKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGM 71
Query: 1205 EDKTKTE 1211
+ T+ E
Sbjct: 72 -NLTEAE 77
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 30.6 bits (70), Expect = 3.5
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 1099 KSEKEQNQL-----------KKSDPIVLTIRSIVEKIRALEREV 1131
K++K + L K+ D +V +R +V+++RA ER++
Sbjct: 107 KAQKAREALAEEFMQFRLVPKQFDRLVDNLRGMVDRVRAQERQI 150
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 31.0 bits (70), Expect = 3.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 1157 EDKPKN---KDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTE 1211
E++P+ K + +T+ KP+ +P +P+ P P+P PV++ E +
Sbjct: 124 EEQPRTQSQKAQSQATTVQTQPVKPKPRPE-KPQPVAPAPAPEPVEKAPKAEAAPPPK 180
Score = 29.8 bits (67), Expect = 7.9
Identities = 9/65 (13%), Positives = 18/65 (27%)
Query: 1146 NKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPE 1205
+ +S + + K KP + PA + PK +P + +
Sbjct: 126 QPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAED 185
Query: 1206 DKTKT 1210
Sbjct: 186 AAETR 190
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 31.6 bits (71), Expect = 3.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 1149 KESTSKKKEDKPKNKDSDKT--KPSETEQSKPEEQPAGDQEPLTPKPSPSPVD 1199
KES K+ KP + KP ++ KP + P ++P PK P D
Sbjct: 538 KESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKD 590
Score = 31.2 bits (70), Expect = 4.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 1155 KKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSP 1197
K +P++ S K P S PE +P G + +PKP SP
Sbjct: 622 KSPKRPESPKSPKRPPPPQRPSSPE-RPEGPKIIKSPKPPKSP 663
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 31.5 bits (71), Expect = 3.7
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 832 SRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIV 891
R ++DE EK + D+ + P ++V E E QT + K+ K
Sbjct: 190 KRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEE---GEEDQTQEEVKRSKER 246
Query: 892 TVK-EPISASETRYGVSTLNEKQVEKSLSK 920
T K + R G L ++ E+ K
Sbjct: 247 THKGRSLPDESKRSGQLGLEDEAEEEKEEK 276
>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides.
Length = 387
Score = 31.2 bits (71), Expect = 3.8
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 256 ERGMKISLVTLCSSVVLLLTLFE---HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNK 312
E+G+ + +T S L F+ + G+ V SVD ++ A+ +P+E+AL
Sbjct: 271 EQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREAVKCGDIPLEVALRV 330
Query: 313 ESKRKTPTLVAFHKGERTFGEDAQII 338
+ L KGE G DA ++
Sbjct: 331 ITSNVARILKLRKKGEIQPGFDADLV 356
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.3 bits (71), Expect = 4.4
Identities = 66/432 (15%), Positives = 143/432 (33%), Gaps = 39/432 (9%)
Query: 759 LGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAES 818
G ++ K E A+ + ++ + I L +E++
Sbjct: 164 FGLEKYEK----LSELLKEVIKEAKAKIEELEGQLSELLEDIEDL---LEALEEELKELK 216
Query: 819 PLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNA 878
L ++ + ++ + + E + E + E + + + + +S E
Sbjct: 217 KLEEI----QEEQEEEELEQEIEALEERLAELEEEKERLEE-LKARLLEIESLELEALKI 271
Query: 879 TQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKAL 938
+ + + + ++E I E E+++E + L+ L ++ E+ L
Sbjct: 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERL 331
Query: 939 NSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLE---EDGWNAEADVLENK 995
LE L +S+LE NE ++++ + E + L+
Sbjct: 332 EKLEEKLEKLESELEELA----EEKNELAKLLEERLKELEERLEELEKELEKALERLKQL 387
Query: 996 LNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSD 1055
I L + E +E E L+ L L L E E L
Sbjct: 388 EEAIQELKEELAELSAALEEIQEELEELEKEL--------EELERELEELEEEIKKLEEQ 439
Query: 1056 IELKSLDTLSMVWFR-------VCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLK 1108
I L + VC ++ L+ ++ E+ E+E ++ K
Sbjct: 440 INQLESKELMIAELAGAGEKCPVCGQEL-----PEEHEKELLELYELELEELEEELSREK 494
Query: 1109 KSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKT 1168
+ + I + +++R LE E+ L + L +K E E+ + K+ +
Sbjct: 495 EEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQL 554
Query: 1169 KPSETEQSKPEE 1180
+ + E + E+
Sbjct: 555 QQLKEELRQLED 566
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction also
removes the guanine base from the pool and therefore can
play a role in the regulation of cellular GTP and the
guanylate nucleotide pool.
Length = 429
Score = 30.7 bits (70), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 505 GFVETH---PQVSVLGVGYDRTL 524
GF++TH PQ + +G G L
Sbjct: 66 GFIDTHIHAPQYANIGSGLGEPL 88
>gnl|CDD|193541 cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase from bacteria
and archaea. Peptidase M20 family, Bacterial and
archaeal Aminoacyclase-1 indole-3-acetic-L-aspartic acid
hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA
amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes
indole-3-acetyl-N-aspartic acid (IAA or auxin) to
indole-3-acetic acid. Genes encoding IAA-amidohydrolases
were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and
ILL2 encode active IAA- amino acid hydrolases, and three
additional amidohydrolase-like genes (ILL3, ILL5, ILL6)
have been isolated. In higher plants, the growth
regulator indole-3-acetic acid (IAA or auxin) is found
both free and conjugated via amide bonding to a variety
of amino acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 415
Score = 30.6 bits (70), Expect = 5.1
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV---PKVQEKITKVV 652
R E LN+ + ++ E+ +K +A V ++ +VG P++ + + +V
Sbjct: 288 VRGETTELNDYMAEQ----AERIIKGAAEMHGVDVEIEVVGEAISADSDPELIDLVEEVA 343
Query: 653 G 653
Sbjct: 344 E 344
>gnl|CDD|152206 pfam11770, GAPT, GRB2-binding adapter (GAPT). This is a family of
transmembrane proteins which bind the growth factor
receptor-bound protein 2 (GRB2) in B cells. In contrast
to other transmembrane adaptor proteins, GAPT is not
phosphorylated upon BCR ligation. It associates with GRB2
constitutively through its proline-rich region.
Length = 158
Score = 29.5 bits (66), Expect = 5.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 1160 PKNK-DSDKTKPSETEQSKPEEQPAGDQEPL------TPKPSPSPVDE 1200
PK K +DK T+QS EE G++ P PS +P DE
Sbjct: 102 PKAKGTTDKALYENTQQSNLEEHIYGNETDPDYYNFQKPSPSEAPQDE 149
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This family
consists of several bovine specific leukaemia virus
receptors which are thought to function as transmembrane
proteins, although their exact function is unknown.
Length = 561
Score = 30.4 bits (68), Expect = 6.6
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 1148 KKESTSKKKEDKPKNKDSDKTKPSETEQS--KPEEQPAGDQEPLTPKPSPSPVDETT 1202
KK+ K+KE+K K K + ++ +P + A ++EPL P S + E +
Sbjct: 281 KKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEEPLPPMSSYKLLAENS 337
>gnl|CDD|218852 pfam06008, Laminin_I, Laminin Domain I. coiled-coil structure. It
has been suggested that the domains I and II from laminin
A, B1 and B2 may come together to form a triple helical
coiled-coil structure.
Length = 263
Score = 30.0 bits (68), Expect = 6.8
Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 35/227 (15%)
Query: 812 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSA 871
A + L L L+ L + +K N+A+ + K + + ++ ++
Sbjct: 38 PISATKRQLEDLEKALSKLAQ--DAENLQKKANQALAKAQKVNAAIERTLGHAKTLAEAI 95
Query: 872 EESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDS-------- 923
+ N + + ++ L E S L
Sbjct: 96 KNLRDNIKEILEK---------------------LAGLGENAFALPGSALSRMLAEAQRM 134
Query: 924 LNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNES--KTIVDKIDEITNWLE 981
L +I +K+ E + + + NE + + D ++E L
Sbjct: 135 LGEIRERDFQKQLQNAEAELKAAEELLNRVQTWFQTPQEENEGLFEALRDDLNEYEAKLS 194
Query: 982 EDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALN 1028
D + + K + L + +R RE QE+ + + L N
Sbjct: 195 -DLRELLDEA-QAKTRDAERLNLANQKRLREFQEKKQEVSELKNQAE 239
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.5 bits (70), Expect = 6.9
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 1071 VCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRA-LER 1129
G+F + + E K E+++KE +KK +L + + K+R E+
Sbjct: 18 AVIGYFVRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKE--ALLEAKEEIHKLRNEFEK 75
Query: 1130 EVRYLENKSKLWMASLNKKKESTSKKKE--DKPKNKDSDKTKPSETEQSKPEEQ 1181
E+R N+ + L +K+E+ +K E +K + + K K E +Q + E++
Sbjct: 76 ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK 129
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 30.3 bits (68), Expect = 7.5
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 1146 NKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSP-SPVDETTTP 1204
++K ++ + K K+ K K +E K E +++ PK +P P DE
Sbjct: 55 YQRKGQQQRESKPKISKKERRKRKQAE----KETEGKTEEKKSTAPKNAPVEPADELPEI 110
Query: 1205 EDKTKTEL 1212
++ + L
Sbjct: 111 DESSVANL 118
>gnl|CDD|153364 cd07680, F-BAR_PACSIN1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 1 or Syndapin I is expressed specifically in the
brain and is localized in neurites and synaptic boutons.
It binds the brain-specific proteins dynamin I,
synaptojanin, synapsin I, and neural Wiskott-Aldrich
syndrome protein (nWASP), and functions as a link
between the cytoskeletal machinery and synaptic vesicle
endocytosis. PACSIN 1 interacts with huntingtin and may
be implicated in the neuropathology of Huntington's
disease. It contains an N-terminal F-BAR domain and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 258
Score = 30.0 bits (67), Expect = 7.8
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 848 DEGNKTAEEP-SKNVNSTESQQQSAEESVK--------------NATQTPDADKK--PKI 890
++G + A++P +K + E+ +++ + K + TP+ KK K+
Sbjct: 118 EDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKV 177
Query: 891 VTVKEPISASETRYGVSTLNEKQVEKSLSK-LDSLNQI-EHAKVRKEKALNSLESLLFDA 948
K+ + ++ +Y V K+ + ++++ Q+ E + +EK L L+ +L D
Sbjct: 178 DKCKQDVQKTQEKYEKVL---DDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDI 234
Query: 949 KSKLELEEYSSVAA 962
K L L E SS A
Sbjct: 235 KRHLNLAESSSYAH 248
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 30.2 bits (69), Expect = 7.9
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 560 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLL--VTRAEFEALNEDLFDRVGYPVEQ 617
+L + A K LS E A + D I L +++ E R+ V+
Sbjct: 336 RLVRSAEEAKIALSDQAETRASL----DFISDGLATEISQQGLEEAISQPLARILELVQL 391
Query: 618 ALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 653
AL + V DVI L G R P ++ + + +
Sbjct: 392 ALDQAQVKPDVI---YLTGGSARSPLIRAALAQQLP 424
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 29.4 bits (66), Expect = 8.2
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 1147 KKKESTSKKKEDKPKNKDSDKTKPSETEQ-SKPEEQPAGDQEPLTPKPSPSPVDETTTPE 1205
KKK++T +KK+ K K K K E ++ ++E P + T E
Sbjct: 52 KKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAE 111
Query: 1206 DKT 1208
Sbjct: 112 VNH 114
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly of
the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that carry
internal targetting information, into the inner membrane.
Length = 377
Score = 30.1 bits (68), Expect = 8.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1150 ESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTP 1204
E+T + +++ +T P ETE PEE+ +P PKP SP + + P
Sbjct: 215 EATPAAESPAEPAEETAETTPEETED-APEEENNKPVKPPVPKPYISPDEYPSAP 268
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 30.0 bits (68), Expect = 9.2
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 1098 EKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKE 1157
E S KE ++ + ++ + EKIR E+ + LE LN K E KK E
Sbjct: 300 EPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLE 359
Query: 1158 DKPKNKDSDKTKPS 1171
D K + K+ S
Sbjct: 360 DLEKRLEKLKSNKS 373
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 30.2 bits (68), Expect = 9.4
Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 15/159 (9%)
Query: 834 SKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEES--VKNATQTPDADKKPKIV 891
S DE + + E V++ K E V + + A QTP + + KI
Sbjct: 593 SSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIE 652
Query: 892 TVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSK 951
++ E I+ K++E+ + D ++IE K+ KA + + +
Sbjct: 653 SLNEEIN-------------KKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEA 699
Query: 952 LELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 990
LE + +A S + +K +E+ L A
Sbjct: 700 LEQQIKQKIAEALNSSELKEKFEELEAELAAARETAAES 738
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.361
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 60,330,925
Number of extensions: 6031135
Number of successful extensions: 5999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5634
Number of HSP's successfully gapped: 273
Length of query: 1212
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1104
Effective length of database: 6,147,370
Effective search space: 6786696480
Effective search space used: 6786696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.0 bits)