RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18164
(1212 letters)
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 329 bits (845), Expect = 5e-99
Identities = 160/711 (22%), Positives = 303/711 (42%), Gaps = 63/711 (8%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 347
+DLG+ +A+ +I +N+ S R TP++V F R GE + T N+
Sbjct: 7 LDLGNNNSVLAVARNRGI-DIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65
Query: 348 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN---DNELYHVEELVAMLL 404
++G P + F + + + + + ++ +L AM +
Sbjct: 66 ANLKRIIGLDYHHPDFEQESKHFTSK--LVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 123
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 124 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 183
Query: 465 IFKR-KDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
IFK E P V F D+G S T SI+++ ++G ++ VLG D+
Sbjct: 184 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAF------KKGQLK------VLGTACDKH 231
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 583
GG + + + + +F K D+ ENP+A ++ A +LK VLSAN +E
Sbjct: 232 FGGRDFDLAITEHFADEFK--TKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 289
Query: 584 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 643
+++++D ++R E E L + L +RV PV +AL + + + + V ++G TR+P
Sbjct: 290 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 349
Query: 644 VQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERE 703
+++ I++ G LS LN DEA A GA + A S +V+ F +DI Y + ++++
Sbjct: 350 LKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQ 409
Query: 704 SESGD-TKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTK 762
E D ++ +++P K++T N+ GDF+ SY + Q+ +
Sbjct: 410 VEDEDHMEVFPA-----GSSFPSTKLITLNRT-GDFSMAASYT------DITQLPPNTPE 457
Query: 763 QISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSK 822
QI+ ++++GV E +S +K D SG+ ++ + + + +++ K
Sbjct: 458 QIANWEITGVQL------PEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVK 511
Query: 823 LGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEE---SVKNAT 879
+ LT + D + +NE +++ N+ + K V TE ++ + EE +++
Sbjct: 512 -KDDLTIVAHTFGLDAKK--LNELIEKENEMLAQ-DKLVAETEDRKNTLEEYIYTLRGKL 567
Query: 880 QTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALN 939
+ A S +E + L + K+ L K
Sbjct: 568 EEEYAPF----------ASDAE----KTKLQGM-LNKAEEWLYDEGFDSIKAKYIAK-YE 611
Query: 940 SLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 990
L SL + + +E A + + AE
Sbjct: 612 ELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKK 662
Score = 138 bits (351), Expect = 8e-34
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 100
+DLG+ +A+ +I +N+ S R TP++V F R GE + T N+
Sbjct: 7 LDLGNNNSVLAVARNRGI-DIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65
Query: 101 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN---DNELYHVEELVAMLL 157
++G P + F + + + + + ++ +L AM +
Sbjct: 66 ANLKRIIGLDYHHPDFEQESKHFTSK--LVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 123
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 124 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 183
Query: 218 IFKR-KDFNETNPVHVMFYDMGAWSTTVSIVS 248
IFK E P V F D+G S T SI++
Sbjct: 184 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMA 215
Score = 71.6 bits (176), Expect = 1e-12
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 874 SVKNATQTPDADKKPKIVTVKE---PISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHA 930
+++ A D + TVK+ I A L+ K++ + + K + + +
Sbjct: 491 TIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFG-----LDAKKLNELIEKENEMLAQDKL 545
Query: 931 KVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 990
E N+LE ++ + KLE EEY+ A+ E + +++ WL ++G+++
Sbjct: 546 VAETEDRKNTLEEYIYTLRGKLE-EEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKA 604
Query: 991 VLENKLNEINSLVVPIWERHREHQERPEA 1019
K E+ SL I R+ +E +
Sbjct: 605 KYIAKYEELASLGNIIRGRYLAKEEEKKQ 633
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 219 bits (561), Expect = 5e-63
Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 25/377 (6%)
Query: 307 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLD---LLGKSIDSPVV 363
EI N + R TP+ VAF ER G+ A+ P+N+ D L+G+ + V
Sbjct: 46 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNT---IFDAKRLIGRKFEDATV 102
Query: 364 QLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELVAMLLHKAREYASVSAGQVINEA 422
Q +P+ +V++ + + + + EE+ +M+L K +E A G ++ A
Sbjct: 103 QSDMKHWPF-RVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSA 161
Query: 423 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY 482
VI VP YFN +RQ+ AG + GL VL+++N+ TA A+ YG+ K+ +V+ +
Sbjct: 162 VITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEK--NVLIF 219
Query: 483 DMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFN 542
D+G + VSI+ T E G E V D LGG + R+ L ++F
Sbjct: 220 DLGGGTFDVSIL------TIEDGIFE------VKSTAGDTHLGGEDFDNRMVSHLAEEFK 267
Query: 543 EMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 602
+K KD+ N RAV +L R K LS++ + +I+ L + +DF +TRA FE
Sbjct: 268 --RKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEE 325
Query: 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKV-VGVELSKNLN 661
LN DLF PVE+AL+ + + I +++LVG TR+PK+Q+ + G EL+K++N
Sbjct: 326 LNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN 385
Query: 662 TDEAAALGAVYKAADLS 678
DEA A GA +AA L
Sbjct: 386 PDEAVAYGAAVQAAILI 402
Score = 105 bits (264), Expect = 5e-24
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 10/193 (5%)
Query: 60 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLD---LLGKSIDSPVV 116
EI N + R TP+ VAF ER G+ A+ P+N+ D L+G+ + V
Sbjct: 46 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNT---IFDAKRLIGRKFEDATV 102
Query: 117 QLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELVAMLLHKAREYASVSAGQVINEA 175
Q +P+ +V++ + + + + EE+ +M+L K +E A G ++ A
Sbjct: 103 QSDMKHWPF-RVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSA 161
Query: 176 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY 235
VI VP YFN +RQ+ AG + GL VL+++N+ TA A+ YG+ K+ +V+ +
Sbjct: 162 VITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEK--NVLIF 219
Query: 236 DMGAWSTTVSIVS 248
D+G + VSI++
Sbjct: 220 DLGGGTFDVSILT 232
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 220 bits (562), Expect = 1e-61
Identities = 159/466 (34%), Positives = 237/466 (50%), Gaps = 47/466 (10%)
Query: 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 339
S G AV +DLG+ + V + G EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 340 TRFPSNSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYH 395
P+N+ D L+G+ D VVQ +P+ +V D R + + ++
Sbjct: 60 AMNPTNT---VFDAKRLIGRRFDDAVVQSDMKHWPF-MVVNDAGRPKVQVEYKGETKSFY 115
Query: 396 VEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMND 455
EE+ +M+L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+
Sbjct: 116 PEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINE 175
Query: 456 YTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSV 515
TA A+ YG+ K+ E N V+ +D+G + VSI+ T G E V
Sbjct: 176 PTAAAIAYGLDKKVG-AERN---VLIFDLGGGTFDVSIL------TIAAGIFE------V 219
Query: 516 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 575
D LGG + R+ + +F +K KD+ EN RAV +L R K LS++
Sbjct: 220 KSTAGDTHLGGEDFDNRMVNHFIAEFK--RKHKKDISENKRAVRRLRTACERAKRTLSSS 277
Query: 576 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
+ +I+ L + IDF +TRA FE LN DLF PVE+AL+ + + I ++LV
Sbjct: 278 TQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLV 337
Query: 636 GAGTRVPKVQEKITKV-VGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLY 694
G TR+PK+Q+ + G EL+K++N DEA A GA +AA LS G K + +D++L
Sbjct: 338 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS-GDKSEN--VQDLLLL 394
Query: 695 ---PIQVEFERESESGD--TKIIKRMLFGPSNTY-PQKKILTFNKY 734
P+ + E +G T +IKR NT P K+ TF Y
Sbjct: 395 DVTPLSLGIET---AGGVMTVLIKR------NTTIPTKQTQTFTTY 431
Score = 106 bits (266), Expect = 1e-23
Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 14/220 (6%)
Query: 33 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 92
S G AV +DLG+ + V + G EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 93 TRFPSNSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYH 148
P+N+ D L+G+ D VVQ +P+ +V D R + + ++
Sbjct: 60 AMNPTNT---VFDAKRLIGRRFDDAVVQSDMKHWPF-MVVNDAGRPKVQVEYKGETKSFY 115
Query: 149 VEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMND 208
EE+ +M+L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+
Sbjct: 116 PEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINE 175
Query: 209 YTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
TA A+ YG+ K+ E N V+ +D+G + VSI++
Sbjct: 176 PTAAAIAYGLDKKVG-AERN---VLIFDLGGGTFDVSILT 211
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 213 bits (545), Expect = 5e-61
Identities = 131/399 (32%), Positives = 203/399 (50%), Gaps = 29/399 (7%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
V+ +DLG+ + VA++ G EI N++ R TP+ VAF ER G+ A+ P
Sbjct: 20 VIGIDLGTTYSCVAVMKNGKT-EILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQ 78
Query: 345 NSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELV 400
N+ D L+G + VQ P+ ++V + + + + ++ EE+
Sbjct: 79 NT---IFDIKRLIGLKYNDRSVQKDIKHLPF-NVVNKDGKPAVEVSVKGEKKVFTPEEIS 134
Query: 401 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 460
M+L K ++ A G + AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA A
Sbjct: 135 GMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAA 194
Query: 461 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
+ YG+ K E ++ YD+G + VS++ + E G E V
Sbjct: 195 IAYGLDKSDK--EHQ---IIVYDLGGGTFDVSLL------SIENGVFE------VQATSG 237
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
D LGG + ++ L K F KK DV +N +A+AKL +EA + K LS+
Sbjct: 238 DTHLGGEDFDYKIVRQLIKAFK--KKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRI 295
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
+I+ +D ID +TRA+FE LN DLF + PVE+ L+ S + + ++LVG TR
Sbjct: 296 EIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTR 355
Query: 641 VPKVQEKITKV-VGVELSKNLNTDEAAALGAVYKAADLS 678
+PKVQ+ + G + SK +N DEA A GA +A LS
Sbjct: 356 IPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
Score = 102 bits (256), Expect = 4e-23
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 14/215 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
V+ +DLG+ + VA++ G EI N++ R TP+ VAF ER G+ A+ P
Sbjct: 20 VIGIDLGTTYSCVAVMKNGKT-EILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQ 78
Query: 98 NSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELV 153
N+ D L+G + VQ P+ ++V + + + + ++ EE+
Sbjct: 79 NT---IFDIKRLIGLKYNDRSVQKDIKHLPF-NVVNKDGKPAVEVSVKGEKKVFTPEEIS 134
Query: 154 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 213
M+L K ++ A G + AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA A
Sbjct: 135 GMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAA 194
Query: 214 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
+ YG+ K E ++ YD+G + VS++S
Sbjct: 195 IAYGLDKSDK--EHQ---IIVYDLGGGTFDVSLLS 224
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 182 bits (464), Expect = 2e-50
Identities = 122/413 (29%), Positives = 201/413 (48%), Gaps = 52/413 (12%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 341
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 342 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 401
P N+ L+G+ VQ S P+ I+A + G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPF-KIIAADN-GDAWVEVKGQK-MAPPQISA 117
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 462 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521
YG+ K N T + YD+G + +SI+ ++ + E VL D
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISII--EIDEVDGEKTFE------VLATNGD 224
Query: 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE---- 577
LGG + RL ++L ++F K D+ +P A+ +L + A + K LS+ +
Sbjct: 225 THLGGEDFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVN 282
Query: 578 ------------HFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP 625
H ++ K+ TRA+ E+L EDL +R ++ AL+ + +
Sbjct: 283 LPYITADATGPKH----------MNIKV--TRAKLESLVEDLVNRSIELLKVALQDAGLS 330
Query: 626 MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
+ I VILVG TR+P VQ+K+ + G E K++N DEA A+GA + L+
Sbjct: 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
Score = 104 bits (262), Expect = 6e-24
Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 14/212 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 94
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 95 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 154
P N+ L+G+ VQ S P+ I+A + G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPF-KIIAADN-GDAWVEVKGQK-MAPPQISA 117
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 215 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
YG+ K N T + YD+G + +SI
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISI 204
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 182 bits (463), Expect = 2e-48
Identities = 124/413 (30%), Positives = 201/413 (48%), Gaps = 52/413 (12%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 341
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 342 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 401
P N+ L+G+ VQ S P+ I AD G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADN--GDAWVEVKGQK-MAPPQISA 117
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 462 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521
YG+ K N T + YD+G + +SI+ ++ + E VL D
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISII--EIDEVDGEKTFE------VLATNGD 224
Query: 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE---- 577
LGG + RL ++L ++F K D+ +P A+ +L + A + K LS+ +
Sbjct: 225 THLGGEDFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVN 282
Query: 578 ------------HFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP 625
H ++ K+ TRA+ E+L EDL +R P++ AL+ + +
Sbjct: 283 LPYITADATGPKH----------MNIKV--TRAKLESLVEDLVNRSIEPLKVALQDAGLS 330
Query: 626 MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
+ I VILVG TR+P VQ+K+ + G E K++N DEA A+GA + L+
Sbjct: 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
Score = 105 bits (265), Expect = 2e-23
Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 94
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 95 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 154
P N+ L+G+ VQ S P+ I AD G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADN--GDAWVEVKGQK-MAPPQISA 117
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 215 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
YG+ K N T + YD+G + +SI
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISI 204
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 165 bits (421), Expect = 1e-43
Identities = 121/417 (29%), Positives = 187/417 (44%), Gaps = 91/417 (21%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ-------- 336
++ +DLG+ VA++ G I N E R TP++VAF GER GE A+
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIP-NPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPN 62
Query: 337 -------IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 389
+GT Y +++ GK
Sbjct: 63 TIISIKRHMGTD-------YKVEIEGKQ-------------------------------- 83
Query: 390 DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 449
Y +E+ A++L + YA G+ + AVI VP YFN +RQ+ AG +AGL+V
Sbjct: 84 ----YTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEV 139
Query: 450 LQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 509
+++N+ TA AL YG+ K +D +T ++ YD+G + VSI+ G E
Sbjct: 140 ERIINEPTAAALAYGLDKEED--QT----ILVYDLGGGTFDVSILELG------DGVFE- 186
Query: 510 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLK 569
V D LGG + + D+L +F ++ D+ ++ A+ +L A + K
Sbjct: 187 -----VKATAGDNHLGGDDFDQVIIDYLVNQFK--QEHGIDLSKDKMALQRLKDAAEKAK 239
Query: 570 NVLSANNEHFAQI--------EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKS 621
LS + QI E ++ L TRA+FE L+ L +R PV QAL+
Sbjct: 240 KELSGVTQ--TQISLPFISANENGPLHLEMTL--TRAKFEELSAHLVERTMGPVRQALQD 295
Query: 622 SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
+ + I +VILVG TR+P VQE I + +G E K +N DE A+GA + ++
Sbjct: 296 AGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIA 352
Score = 92.3 bits (230), Expect = 2e-19
Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 65/224 (29%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ-------- 89
++ +DLG+ VA++ G I N E R TP++VAF GER GE A+
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIP-NPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPN 62
Query: 90 -------IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 142
+GT Y +++ GK
Sbjct: 63 TIISIKRHMGTD-------YKVEIEGKQ-------------------------------- 83
Query: 143 DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 202
Y +E+ A++L + YA G+ + AVI VP YFN +RQ+ AG +AGL+V
Sbjct: 84 ----YTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEV 139
Query: 203 LQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
+++N+ TA AL YG+ K +D +T ++ YD+G + VSI
Sbjct: 140 ERIINEPTAAALAYGLDKEED--QT----ILVYDLGGGTFDVSI 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.4 bits (192), Expect = 1e-14
Identities = 101/636 (15%), Positives = 191/636 (30%), Gaps = 182/636 (28%)
Query: 528 EMQIRLRDFLGKKFNEMKKT--TKDVFENPRAVAK------LFKEAGRLKNV-------L 572
E Q + +D L + KDV + P+++ + + L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 573 SANNEHFAQIEGLIDEIDFKLLVTRAEFE----ALNEDLF----DRVG--------YPVE 616
S E + + I++K L++ + E ++ ++ DR+ Y V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 617 -----QALKSSAVPMDVISQVILVG-AGT----------RVPKVQEK-------ITKVVG 653
L+ + + + V++ G G+ KVQ K + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LK 190
Query: 654 VELSKNLNTDEA--AALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKI 711
N N+ E L + D + ++ I++ +
Sbjct: 191 -----NCNSPETVLEMLQKLLYQID-------PNWTSRSDHSSNIKLRIH------SIQA 232
Query: 712 IKRMLFGPSNTYPQK-KILTFNKYVGDFNFNVSYASEIEHLNPE-QIAMLGTKQISKFDV 769
R L S Y +L NV A N +I +L T+ D
Sbjct: 233 ELRRLL-KSKPYENCLLVL-------L---NVQNAKAWNAFNLSCKI-LLTTRFKQVTDF 280
Query: 770 SGVSEAFGKHNEENAESKGIKAHFAMDES-GILSL-VNIELVVEKQEAAE-SPLSKLGNT 826
+S A H + S DE +L ++ +E +P
Sbjct: 281 --LSAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------ 328
Query: 827 LTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 886
S+ + S D + K+VN + E S+ P +
Sbjct: 329 RLSIIAESIRDGLATW-------------DNWKHVN-CDKLTTIIESSLNV--LEPAEYR 372
Query: 887 K--------PKIVTVKEPI--------SASETRYGVSTLN-----EKQVEKSLSKLDSLN 925
K P + + S+ V+ L+ EKQ ++S + S+
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 926 QIEHAKVRKEKAL--------NSLESLLFDAKSKLELEEYS--------SVAAPNESKTI 969
K+ E AL N ++ D L++Y E T+
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 970 VDKI--DEITNWLEE----DG--WNAEADVLENKLNEINSLVVPIWERH-REHQERPEAL 1020
+ D +LE+ D WNA +L N L ++ ++ + ++ + E L
Sbjct: 493 FRMVFLD--FRFLEQKIRHDSTAWNASGSIL-NTLQQLK-----FYKPYICDNDPKYERL 544
Query: 1021 KS--LNNALNVSVTFYNS----IKNLSLNTNETEDL 1050
+ L+ + S + ++L E E +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALM-AEDEAI 579
Score = 59.1 bits (142), Expect = 1e-08
Identities = 80/510 (15%), Positives = 152/510 (29%), Gaps = 167/510 (32%)
Query: 737 DFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMD 796
DF E ++ + +++ + FD V + K E I
Sbjct: 8 DFETG-----EHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMS-KDA 60
Query: 797 ESGILSLVNIELVVEKQEAAESPLSKLGNTLTS----LFSRSKTDENEKPINEA--VDEG 850
SG L L ++ KQE + L L S KT++ + + +++
Sbjct: 61 VSGTLRL--FWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 851 NKTAEEPSK----NVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYG- 905
++ + NV+ + + ++ A + K V + G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLK-----LRQALLE---LRPAKNVLI----------DGV 158
Query: 906 ---------VSTLNEKQVEKSLSKLDSLNQIEHAKVRK----EKALNSLESLLFDAKSKL 952
+ +V+ + +I ++ E L L+ LL+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 953 ELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVV--PIWERH 1010
+ + S I +I I L +L++K E N L+V +
Sbjct: 214 T-------SRSDHSSNIKLRIHSIQAELR--------RLLKSKPYE-NCLLVLLNVQN-- 255
Query: 1011 REHQERPEALKSLN---------------NALNVSVTFYNSIKNLSLNTNETEDLNLFS- 1054
+A + N + L+ + T + S+ + S+ E +L
Sbjct: 256 ------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 1055 --DIELKSLD---------TLSMVW-----FRVCWGFFFLLFKQDKGLDTLI-------- 1090
D + L LS++ W + DK L T+I
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDK-LTTIIESSLNVLE 367
Query: 1091 -NETK----------------------VWKEKSEKEQ----NQLKKSDPIVLTIRSIVEK 1123
E + +W + + + N+L K S+VEK
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--------YSLVEK 419
Query: 1124 IRALEREVR----YLENKSKL-WMASLNKK 1148
+ E + YLE K KL +L++
Sbjct: 420 -QPKESTISIPSIYLELKVKLENEYALHRS 448
Score = 57.2 bits (137), Expect = 4e-08
Identities = 88/572 (15%), Positives = 169/572 (29%), Gaps = 195/572 (34%)
Query: 89 QIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF-----KSRFPY-YDIVADEERG----TIV 138
II ++ + L S +VQ F + + + + E+R T +
Sbjct: 53 HIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 139 FKT------NDNEL---YHV--EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 187
+ NDN++ Y+V + K R+ ++ +++ G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPY----LKLRQALL----ELRPAKNVLIDG------ 157
Query: 188 RQSMLKAGELAGLK-VLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY-DMGAWSTTVS 245
+L +G K + L V L+Y + + DF +F+ ++ ++ +
Sbjct: 158 ---VLGSG-----KTWVAL-----DVCLSYKVQCKMDFK-------IFWLNLKNCNSPET 197
Query: 246 IV------SYQVVKT--------------------------KERGMKISLVTL------- 266
++ YQ+ K + + L+ L
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 267 --------CSSVVLLLT------------------LFEHSYGIAVM-SVDLGSEWMKVAI 299
C +LL T L HS + L +++
Sbjct: 258 AWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 300 ------VSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTRF----PSNSY 347
V P +++ ES R K D II + P+
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYR 372
Query: 348 GYFLDL--LGKSIDSP--VVQLFKSRFPYYD---IVADEERGTIVFKTNDNELY------ 394
F L S P ++ L D +V + ++V K
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 395 -----HVEELVAMLLHKA--REYASVSAGQVINEAVIIVPGYF-NQIERQSMLKAGELAG 446
+E A LH++ Y + + YF + I LK E
Sbjct: 433 LELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHP- 487
Query: 447 LKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-YQVVKTKERG 505
+ M + V L++ ++K + +D AW+ + SI++ Q +K +
Sbjct: 488 ----ERMTLFRMVFLDFRFLEQK----------IRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 506 FVETHPQVSVLGVGYDRTLGGLEMQIRLRDFL 537
+ P+ Y+R + + DFL
Sbjct: 534 ICDNDPK-------YERLVNAIL------DFL 552
Score = 40.2 bits (93), Expect = 0.005
Identities = 43/277 (15%), Positives = 78/277 (28%), Gaps = 60/277 (21%)
Query: 5 RPSSIYRMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAI------VSPGVP 58
R + + T S+ L +++ V P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDE-----VKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 59 MEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTRF----PSNSYGYFLDL--LGKS 110
+++ ES R K D II + P+ F L S
Sbjct: 328 RRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 111 IDSP--VVQLFKSRFPYYD---IVADEERGTIVFKTNDNELY-----------HVEELVA 154
P ++ L D +V + ++V K +E A
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 155 MLLHKA--REYASVSAGQVINEAVIIVPGYF-NQIERQSMLKAGELAGLKVLQLMNDYTA 211
LH++ Y + + YF + I LK E + M +
Sbjct: 445 --LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHP-----ERMTLFRM 495
Query: 212 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
V L++ ++K + +D AW+ + SI++
Sbjct: 496 VFLDFRFLEQK----------IRHDSTAWNASGSILN 522
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 1e-10
Identities = 47/280 (16%), Positives = 82/280 (29%), Gaps = 101/280 (36%)
Query: 526 GLEMQIRLRDFLGKK-FNEMKKTTKD---------VFENPRAVAKLFK-EAGR------L 568
G+ M + + +N KD V NP + F E G+
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 569 KNVLSANNEHFAQIEGLIDEIDFK-----------------------LLVTRAEFEAL-N 604
+ + + E + EI+ L+ +A FE L +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 605 EDLFDR--------VG-Y----------PVEQALK---------SSAVPMD--------- 627
+ L +G Y +E ++ AVP D
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 628 ---VISQVILVGAGTRVPKVQEKITKVVG--VELSKNLNTDE-----AAALGAVYKAADL 677
+V + + V E++ K G VE+ N N + A L A+ ++
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NYNVENQQYVAAGDLRALDTVTNV 1868
Query: 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLF 717
K++K I DI+ + E ++ LF
Sbjct: 1869 LNFIKLQK-I--DIIELQKSLSLEE---------VEGHLF 1896
Score = 63.9 bits (155), Expect = 3e-10
Identities = 60/291 (20%), Positives = 109/291 (37%), Gaps = 78/291 (26%)
Query: 653 GVELSKNLNTDEAAALGAVYKAADLST----GFKVKKFITKDIVL-YPIQVEFERESESG 707
G++L T +AA V+ AD GF + DIV+ P+ + E G
Sbjct: 1632 GMDL---YKTSKAAQ--DVWNRADNHFKDTYGFSIL-----DIVINNPVNLTIHFGGEKG 1681
Query: 708 DTKIIK----RMLF--GPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLN-PE--QIAM 758
K I+ M+F +KI K + + + + ++ SE L+ + Q A+
Sbjct: 1682 --KRIRENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 759 LGTKQISKFDVSGVSEAFGKHNEENAESKGIK---AHFA---MDE-------SGILSLVN 805
+ + F E+ +SKG+ A FA + E + ++S+ +
Sbjct: 1737 T-LMEKAAF--------------EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 806 -IELVVE----KQEAAESPLSKLGNTLTSLF----SRSKTDENEKPINEAVDE-GNKTAE 855
+E+V Q A P +LG + + R +++ + V+ G +T
Sbjct: 1782 LVEVVFYRGMTMQVAV--PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 856 --EPSKNVNSTESQQQ---SAE-ESVKNATQTPDADKKPKIVTVKEPISAS 900
E N N QQ + + ++ T + K KI ++ S S
Sbjct: 1840 LVEIV-NYNV--ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 63.1 bits (153), Expect = 5e-10
Identities = 112/699 (16%), Positives = 193/699 (27%), Gaps = 284/699 (40%)
Query: 96 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 155
P+ S+ QL + +F T F D+E ELV
Sbjct: 23 PTASFFIAS------------QL-QEQF-----NKILPEPTEGF-AADDEPTTPAELVGK 63
Query: 156 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 215
L GY + + S K G+ +VL L L
Sbjct: 64 FL-----------------------GYVSSLVEPS--KVGQFD--QVLNL-------CLT 89
Query: 216 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMKISLVTLCSSVVLLLT 275
F+ + E N +H + + + T + + +++K
Sbjct: 90 E--FEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIK---------------------- 124
Query: 276 LFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA 335
+Y A + K AL + LVA FG
Sbjct: 125 ----NYITARIM-------AKRPFDKKSNS---ALFRAVGEGNAQLVA------IFG--G 162
Query: 336 QIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYH 395
Q G N+ YF +L L+++ Y+ +V D + K + L
Sbjct: 163 Q--G-----NTDDYFEEL---------RDLYQT---YHVLVGD------LIKFSAETL-- 195
Query: 396 VEELVAMLLHKAREYASVSAGQVIN-----EAVIIVPG--YFNQIERQSMLKAGELAGLK 448
EL+ L + + Q +N E P Y I S L G+
Sbjct: 196 -SELIRTTLDAEKVF-----TQGLNILEWLENPSNTPDKDYLLSIPI-SC----PLIGV- 243
Query: 449 VLQLMNDYTAVA----LNYGIFKR------------------------KDFNE--TNPVH 478
+QL + Y A G + + F +
Sbjct: 244 -IQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 479 VMFYDMGAWST----TVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLR 534
V+F+ +G S+ + + E P +S+ + T ++ +
Sbjct: 302 VLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL----TQEQVQDYVN-- 354
Query: 535 DFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLL 594
K N K V ++ L N A N L+
Sbjct: 355 -----KTNSHLPAGKQV-----EIS--------LVN--GAKN----------------LV 378
Query: 595 VTRAEFEALNEDLFDRVGYP-----VEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI- 648
V+ G P + L+ + P + Q +R+P + K+
Sbjct: 379 VS---------------GPPQSLYGLNLTLRKAKAPSG-LDQ-------SRIPFSERKLK 415
Query: 649 --------------------TKVVGVELSKNLNTDEAAALG-AVY---KAADL-STGFKV 683
+ ++ +L KN + A + VY +DL +
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 684 KKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNT 722
+ I I+ P V++E ++ T I+ FGP
Sbjct: 476 SERIVDCIIRLP--VKWETTTQFKATHIL---DFGPGGA 509
Score = 57.4 bits (138), Expect = 3e-08
Identities = 107/686 (15%), Positives = 192/686 (27%), Gaps = 267/686 (38%)
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P+ S+ QL + +F T F D+E ELV
Sbjct: 23 PTASFFIAS------------QL-QEQF-----NKILPEPTEGF-AADDEPTTPAELVGK 63
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
L GY + + S K G+ +VL L L
Sbjct: 64 FL-----------------------GYVSSLVEPS--KVGQFD--QVLNL-------CLT 89
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKT-------KERGFVETHP---- 511
F+ + E N +H + + + T + + +++K +R F +
Sbjct: 90 E--FEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 512 ------QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRA-VAKLFKE 564
++ + GG Q D+ F E+ +D+++ V L K
Sbjct: 147 RAVGEGNAQLVAI-----FGG---QGNTDDY----FEEL----RDLYQTYHVLVGDLIKF 190
Query: 565 AGRLKNVLSANNEHFAQI--EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS 622
+ + L ++ +GL + + + P + L S
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGL----NILEWLENPS---------NT---PDKDYLLSI 234
Query: 623 AV--PMDVISQ-----VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675
+ P+ + Q V G +++ + G S+ L T A A+
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLVT--AVAIA----ET 286
Query: 676 DLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLF--G-------PSNTYPQK 726
D + + F K I +LF G P+ + P
Sbjct: 287 D-----------SWE--------SFFVSVR----KAI-TVLFFIGVRCYEAYPNTSLPPS 322
Query: 727 KILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVS-EAFGKH-NEENA 784
+ + E P ML +S ++ E + N+ N
Sbjct: 323 --------------ILEDSLENNEGVPS--PMLS--------ISNLTQEQVQDYVNKTN- 357
Query: 785 ESKGIKAHFAMDESGILSLVN--IELVVEKQEAAESPLS--KLGNTLTSLFSRSKTDENE 840
+H + +SLVN LVV + P S L TL + S D
Sbjct: 358 ------SHLPAGKQVEISLVNGAKNLVV-----SGPPQSLYGLNLTLRKAKAPSGLD--- 403
Query: 841 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISA- 899
QS + P +++K K P+++
Sbjct: 404 ----------------------------QS---------RIPFSERKLKFSNRFLPVASP 426
Query: 900 --SETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESL---LFDAKSKLEL 954
S L + + I V+ + N+ + + ++D +L
Sbjct: 427 FHSH--L-------------LV--PASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSDL 468
Query: 955 EEYSSVAAPNESKTIVDKIDEIT-NW 979
S + IVD I + W
Sbjct: 469 RVLSGSISER----IVDCIIRLPVKW 490
Score = 55.4 bits (133), Expect = 1e-07
Identities = 57/391 (14%), Positives = 115/391 (29%), Gaps = 149/391 (38%)
Query: 44 GSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER----TFGEDAQIIGTRFPSNS 99
GS+ G+ M++ ++ + +++ + T+G I P N
Sbjct: 1625 GSQ-------EQGMGMDLYKTSKAAQD-----VWNRADNHFKDTYGFSILDIVINNPVNL 1672
Query: 100 YGYFLDLLGKSI---------DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVE 150
+F GK I ++ V K+ + +I +E + F++ L +
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI--NEHSTSYTFRSEKGLLSATQ 1730
Query: 151 EL-VAMLLHKAREYASVSAGQVI-NEAVIIVPGYFNQIERQSMLKA----GELAGLKVLQ 204
A+ L +A + + ++ +I F A GE
Sbjct: 1731 FTQPALTL------MEKAAFEDLKSKGLIPADATF----------AGHSLGE-------- 1766
Query: 205 LMNDYTA-VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMKISL 263
Y A +L + + V +V Y RGM +
Sbjct: 1767 ----YAALASLA-DVM---SI----------------ESLVEVVFY-------RGMTMQ- 1794
Query: 264 VTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVA 323
+AV +LG + ++PG + + ++E+ + V
Sbjct: 1795 -------------------VAVPRDELGRSNYGMIAINPG-RVAASFSQEALQYVVERVG 1834
Query: 324 FHKGERTF-------GEDAQII--GTRFPSNSYGYFLDLLG-KSIDSPVVQLFKSRFPYY 373
G E+ Q + G ++ L+ + + ID +++L KS
Sbjct: 1835 KRTGW--LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID--IIELQKS----- 1885
Query: 374 DIVADEERGTIVFKTNDNELYHVEELVAMLL 404
+EE+ L
Sbjct: 1886 --------------------LSLEEVEGHLF 1896
Score = 54.7 bits (131), Expect = 2e-07
Identities = 106/613 (17%), Positives = 200/613 (32%), Gaps = 208/613 (33%)
Query: 484 MGAWSTTVSIVSYQVVKT---------------KERGFVETHPQVSVLGVGYDRTLGGLE 528
M A+ST +S+ ++ +E+ F + P+ + D E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAE 59
Query: 529 MQIRLRDFLGKKF--NEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 586
+ + FLG + + ++ + F+ + + E L N+ H A L+
Sbjct: 60 LVGK---FLG--YVSSLVEPSKVGQFD--QVLNLCLTEFEN--CYLEGNDIH-ALAAKLL 109
Query: 587 DEIDFKLL----VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 642
E D L+ + + A P ++ S+ L A
Sbjct: 110 QENDTTLVKTKELIKNYITARIM-----AKRPFDKKSNSA-----------LFRA----- 148
Query: 643 KVQEKITKVV------GVELSKNLNT--DEAAALGAVYKAADLSTGFKVKKFITK-DIVL 693
V E ++V G N + +E L Y V I L
Sbjct: 149 -VGEGNAQLVAIFGGQG-----NTDDYFEELRDLYQTYHVL-------VGDLIKFSAETL 195
Query: 694 YPI---QVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIE 749
+ ++ E+ G + I L PSNT P K L + +S
Sbjct: 196 SELIRTTLDAEKVFTQGLN---ILEWLENPSNT-PDKDYLL---SIP-----ISC----- 238
Query: 750 HLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEE-NAESKGIKAHFAMDESGILSLVNIEL 808
P ++G Q++ + V ++ G E + KG H G+++ V
Sbjct: 239 ---P----LIGVIQLAHYVV--TAKLLGFTPGELRSYLKGATGHSQ----GLVTAV---- 281
Query: 809 VVEKQEAAESPLSKLGNTLTSLF---SRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTE 865
+ + ++ ES + +T LF R EA P+ ++ +
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCY---------EAY---------PNTSLPPSI 323
Query: 866 SQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK----L 921
+ +S++N P P+ + +S L ++QV+ ++K L
Sbjct: 324 LE-----DSLENNEGVPS------------PMLS------ISNLTQEQVQDYVNKTNSHL 360
Query: 922 DSLNQIE----------------------HAKVRKEKALNSLES--LLFDAKSKLELE-E 956
+ Q+E + +RK KA + L+ + F + KL+
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNR 419
Query: 957 YSSVAAPNESKTIVDKIDEITNWLEEDG--WNAE------------ADVLENKLNEINSL 1002
+ VA+P S +V D I L ++ +NA+ +D+ + +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 1003 V-----VPI-WER 1009
V +P+ WE
Sbjct: 480 VDCIIRLPVKWET 492
Score = 54.7 bits (131), Expect = 2e-07
Identities = 54/408 (13%), Positives = 96/408 (23%), Gaps = 205/408 (50%)
Query: 69 RKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDI 128
P + H G GE + I + + + +D GK + FK
Sbjct: 1666 INNPVNLTIHFG----GEKGKRIRENYSAMIFETIVD--GKLKTEKI---FKE------- 1709
Query: 129 VADEERGTIVFKTNDNELYHVEEL-VAMLLHKAREYASVSAGQVI-NEAVIIVPGYFNQI 186
+E + F++ L + A+ L +A + + ++ +I F
Sbjct: 1710 -INEHSTSYTFRSEKGLLSATQFTQPALTL------MEKAAFEDLKSKGLIPADATF--- 1759
Query: 187 ERQSMLKAG----ELAGLKVLQLMNDYTA-VALNYGIFKRKDFNETNPVHVMFYDMGAWS 241
AG E Y A +L +
Sbjct: 1760 -------AGHSLGE------------YAALASLA-DVM---SI----------------E 1780
Query: 242 TTVSIVSYQVVKTKERGMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVS 301
+ V +V Y RGM + +AV +LG + ++
Sbjct: 1781 SLVEVVFY-------RGMTMQ--------------------VAVPRDELGRSNYGMIAIN 1813
Query: 302 PGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361
PG + + ++E+ + V G
Sbjct: 1814 PG-RVAASFSQEALQYVVERVGKRTGW--------------------------------- 1839
Query: 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINE 421
+V+ IV N N Q
Sbjct: 1840 LVE-------------------IV---NYN----------------------VENQQY-- 1853
Query: 422 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRK 469
V AG+L L + + LN+ K +
Sbjct: 1854 -VA----------------AGDLRALDTVTNV-------LNF--IKLQ 1875
Score = 37.7 bits (87), Expect = 0.032
Identities = 65/315 (20%), Positives = 107/315 (33%), Gaps = 119/315 (37%)
Query: 790 KAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK---TDEN-EKPINE 845
HF D G S+++I V +P LT F K EN I E
Sbjct: 1650 DNHF-KDTYGF-SILDI---VI-----NNP-----VNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 846 AVDEGNKTAEEPSKNVN-STESQQQSAEESVKNATQ-TPDADKKPKIVTVKEPISASETR 903
+ +G E+ K +N + S +E+ + +ATQ T +P + + +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-----QPALTLM----EKAAFE 1745
Query: 904 YGVSTLNEKQVEK--------SL---SKLDSLNQIEHAKVRKEKALNSLES---LLF--- 946
L K + SL + L SL A V + S+ES ++F
Sbjct: 1746 D----LKSKGLIPADATFAGHSLGEYAALASL-----ADV-----M-SIESLVEVVFYRG 1790
Query: 947 ----DAKSKLEL--EEYSSVAA-PNE---------SKTIVDKIDEITNWLEEDGWNAEAD 990
A + EL Y +A P + +V+++ + T W
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW----------- 1839
Query: 991 VLE--NKLNEINSLVV---PIWERHREHQERPEALKSLNNALNVSVTFYNSIKNL----- 1040
++E N N N V + AL ++ N LN + ++ +
Sbjct: 1840 LVEIVN-YNVENQQYVAAGDL-----------RALDTVTNVLN-----FIKLQKIDIIEL 1882
Query: 1041 --SLNTNETEDLNLF 1053
SL+ E E +LF
Sbjct: 1883 QKSLSLEEVEG-HLF 1896
Score = 35.0 bits (80), Expect = 0.21
Identities = 39/270 (14%), Positives = 78/270 (28%), Gaps = 76/270 (28%)
Query: 897 ISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEE 956
+ A TR TL+ +E L L A +E+ L E
Sbjct: 1 MDAYSTRP--LTLSHGSLEHVL--LVPTASFFIASQLQEQFNKILP------------EP 44
Query: 957 YSSVAAPNESKTIVD---K-IDEITNWLEEDGWNAEADVLENKL----------NEINSL 1002
AA +E T + K + +++ +E VL L N+I++L
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 1003 VVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLD 1062
+ + + +L + + + ++ + LF + +
Sbjct: 105 AAKLLQEND---------TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 1063 TLSMVWFRVCWGFFFLLFK-QDKGLDTLINETKVWKEKSEKEQNQLKK----SDPIVLTI 1117
+F Q G N ++E L+ +V
Sbjct: 156 -------------LVAIFGGQ--G-----NTDDYFEE--------LRDLYQTYHVLV--- 184
Query: 1118 RSIVEKIRA-LEREVRYLENKSKLWMASLN 1146
+++ L +R + K++ LN
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 54.2 bits (130), Expect = 6e-09
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 928 EHAKVRKE-KALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWN 986
H+ + LES F+ K +E E+ +P + K I DK DEI WL+ +
Sbjct: 9 HHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQ-T 67
Query: 987 AEADVLENKLNEINSLVVPI 1006
AE + E++ ++ L PI
Sbjct: 68 AEKEEFEHQQKDLEGLANPI 87
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 53.8 bits (129), Expect = 7e-09
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 931 KVR-KEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEA 989
+ A N+LES F+ KS +E E + + K ++DK E+ +WL+ + AE
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANT-LAEK 61
Query: 990 DVLENKLNEINSLVVPI 1006
D E+K E+ + PI
Sbjct: 62 DEFEHKRKELEQVCNPI 78
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 53.4 bits (128), Expect = 1e-08
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 937 ALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 996
+ LES F+ K+ +E E+ + + I+DK +EI +WL+++ AE + E++
Sbjct: 5 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQT-AEKEEFEHQQ 63
Query: 997 NEINSLVVPI 1006
E+ + PI
Sbjct: 64 KELEKVCNPI 73
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 43.7 bits (104), Expect = 2e-04
Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 81/275 (29%)
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
++V L K G + +A +P ++ AGL+++ L+++
Sbjct: 74 IQIVRELKAKVERLL----GSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEP 129
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY-QVVKTKERGFVETHPQVSV 515
A A GI + + D+G +T ++++ ++ T
Sbjct: 130 VAAARALGI----NDG-------IVVDIGGGTTGIAVIEKGKITATF------------- 165
Query: 516 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 575
D GG + + L F+EA +K S +
Sbjct: 166 -----DEPTGGTHLSLVLAGSYKIP---------------------FEEAETIKKDFSRH 199
Query: 576 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
E + + +++ V++ +K+ D V +V
Sbjct: 200 REIMRVV----------------------RPVIEKMALIVKEVIKN----YDQTLPVYVV 233
Query: 636 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670
G + E+ ++ +G E+ ++ LG
Sbjct: 234 GGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGI 268
Score = 40.3 bits (95), Expect = 0.002
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
++V L K G + +A +P ++ AGL+++ L+++
Sbjct: 74 IQIVRELKAKVERLL----GSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEP 129
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
A A GI + + D+G +T ++++
Sbjct: 130 VAAARALGI----NDG-------IVVDIGGGTTGIAVIE 157
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 39.8 bits (92), Expect = 0.004
Identities = 44/401 (10%), Positives = 108/401 (26%), Gaps = 108/401 (26%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 347
+D GS +K+ + ++ + +F + D ++ Y
Sbjct: 5 IDDGSTNIKLQWQES---------DGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQY 55
Query: 348 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 407
+ D V TN + ++ + +H A
Sbjct: 56 SF----------------------------DPISPDAVVTTNIA--WQYSDVNVVAVHHA 85
Query: 408 REYASVSAGQVINEAVIIVP-----------------GYFNQIERQSMLKAGELAGLKVL 450
+ + +V + V +P ++ L G+ +K +
Sbjct: 86 LLTSGLPVSEV--DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDV 143
Query: 451 QLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETH 510
++M + + +E + + + D+G + +S V ++ +
Sbjct: 144 KVMPESIPAGYEVLQ----ELDELDSLLI--IDLGGTTLDISQVMGKLSGISKIYG---- 193
Query: 511 PQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKN 570
D +LG + ++D L + D
Sbjct: 194 ----------DSSLGVSLVTSAVKDALSLARTKGSSYLAD-------------------- 223
Query: 571 VLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 630
I D K + ++ + + +EQ + ++ +
Sbjct: 224 ---------DIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYT 274
Query: 631 QVILVGAGTR-VPKVQEKITKVVGVELSKNLNTDEAAALGA 670
V+++G G + +K T++ K N+ G
Sbjct: 275 HVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGM 315
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.039
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 25/97 (25%)
Query: 1087 DTLINET---KVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMA 1143
D L E + W+E+ K L++ D S V + E+ + LE W
Sbjct: 78 DRLTQEPESIRKWREEQRKR---LQELD-----AASKVMEQEWREKAKKDLEE----WNQ 125
Query: 1144 SLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEE 1180
+++ E KNK +++ Q +
Sbjct: 126 RQSEQVE----------KNKINNRIADKAFYQQPDAD 152
Score = 33.2 bits (75), Expect = 0.32
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 918 LSKLDSLNQIEHAKVRK--EKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDE 975
+++ D L Q E +RK E+ L+ L DA SK+ +E+ A +
Sbjct: 74 IAQADRLTQ-EPESIRKWREEQRKRLQEL--DAASKVMEQEWREKAK-----------KD 119
Query: 976 ITNWLEEDGWNAEADVLENKLNE 998
+ W + E + + N++ +
Sbjct: 120 LEEWNQRQSEQVEKNKINNRIAD 142
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels,
cell WALL, peptidoglycan-anchor, secreted, hydrolase;
HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Length = 937
Score = 37.2 bits (85), Expect = 0.040
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 1147 KKKESTSKKKEDKPKNKDS-DKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPE 1205
E S + E D ++ + + + + E A E +P + + ET
Sbjct: 32 ANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAA 91
Query: 1206 DKTKTE 1211
K E
Sbjct: 92 SAAKPE 97
Score = 36.9 bits (84), Expect = 0.044
Identities = 10/65 (15%), Positives = 20/65 (30%)
Query: 1147 KKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPED 1206
+ +E+ + S +++ S E K E + L + ET +P
Sbjct: 20 QGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPAS 79
Query: 1207 KTKTE 1211
Sbjct: 80 NEAAT 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.091
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 1098 EKSE--KEQNQLKK----SDPIVLTIRSIVE 1122
EK K Q LK S P L I++ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAP-ALAIKATME 47
Score = 31.5 bits (70), Expect = 0.90
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 32/53 (60%)
Query: 911 EKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAP 963
EKQ +L KL + SL KL Y+ +AP
Sbjct: 18 EKQ---ALKKLQA----------------SL---------KL----YADDSAP 38
Score = 29.1 bits (64), Expect = 5.0
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 1015 ERPEALKSLNNALNVSVTFY--NSIKNLSLN-TNE 1046
E+ +ALK L +L + Y +S L++ T E
Sbjct: 18 EK-QALKKLQASLKL----YADDSAPALAIKATME 47
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 35.6 bits (82), Expect = 0.13
Identities = 54/298 (18%), Positives = 118/298 (39%), Gaps = 18/298 (6%)
Query: 906 VSTLNEKQVEKSL--SKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAP 963
EK + + ++ + + E +VR LE +L + ++++E EE S
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ 947
Query: 964 NESKTIVDKIDEITNWLEEDGWN-----AEADVLENKLNEINSLVVPIWERHREHQERPE 1018
E K + ++ ++ LEE+ E + K+ ++ ++ + +++ + + +
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Query: 1019 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIE--LKSLDTLSMVW---FRVCW 1073
L+ + L ++ K +L + + ++ S++E LK + R
Sbjct: 1008 LLEERVSDLTTNLAEEEE-KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 1074 GFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLK-KSDPIVLTIRSIVEKIRALEREVR 1132
G L +Q L I E K K E+E + + + ++KIR LE +
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 1133 YLENK---SKLWMASLNKKKESTSKKKED-KPKNKDSDKTKPSETEQSKPEEQPAGDQ 1186
L+ K K+K S++ E K + +D+ T ++ E + + D+
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 33.2 bits (75), Expect = 0.20
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 1093 TKVWKEKSEKEQNQL---KKSDPIVLTIRSI-------VEKIRALEREVRYLENKSKLWM 1142
T + +K + KK V R+I + + + L+ + E + +
Sbjct: 54 TIARRRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRE 113
Query: 1143 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAG 1184
K + K+ + K + KD K +ET+++K G
Sbjct: 114 LKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKG 155
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.5 bits (76), Expect = 0.26
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 16/46 (34%)
Query: 250 QVVKTKERGMKISLV-TLCSSVVLLLTLFEHSYGIAVMSVDLGSEW 294
++V+ G +V LC V+ + VD SEW
Sbjct: 33 KIVERFSEG---DVVCALCGLVLS-----DKL-------VDTRSEW 63
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 33.5 bits (77), Expect = 0.41
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 617 QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676
+ ++S I++++L+G G + ++ ++G+++++ TDE A+GA +AA
Sbjct: 416 ELIRSLGAS---ITRILLIGGGAKSEAIRTLAPSILGMDVTR-PATDEYVAIGAARQAAW 471
Query: 677 LSTGFK----VKKFITKDIVLYPIQVEFER 702
+ +G + I P + +E
Sbjct: 472 VLSGETEPPAWQLTIDGVETGEPTEAVYEA 501
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase;
HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Length = 373
Score = 33.1 bits (75), Expect = 0.59
Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 22/176 (12%)
Query: 120 KSRFPYYDIVADE-ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVII 178
+R + ++ + + + E++ + S + + VI
Sbjct: 40 SARMGFVREGKNDSVHACVTRYSMKR--KDITEIIEFFNEIIELMPA-SVMKRVKAGVIN 96
Query: 179 VPGYFN-------------QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN 225
VPG KA L ++ND A +G+ D
Sbjct: 97 VPGPVTGGAVGGPFNNLKGIARLSDYPKA--LFPPGHSAILNDLEAGG--FGVLAVSD-A 151
Query: 226 ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMKISLVTLCSSVVLLLTLFEHSY 281
+ G T V + R + ++ T S ++ + +
Sbjct: 152 HVFSEYFGVMWEGTQWRTCEQEPAGSVIGRGRCLVLAPGTGLGSSLIYYNPPMNQH 207
Score = 32.3 bits (73), Expect = 0.89
Identities = 14/125 (11%), Positives = 28/125 (22%), Gaps = 19/125 (15%)
Query: 367 KSRFPYYDIVADE-ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVII 425
+R + ++ + + + E++ + S + + VI
Sbjct: 40 SARMGFVREGKNDSVHACVTRYSMKR--KDITEIIEFFNEIIELMPA-SVMKRVKAGVIN 96
Query: 426 VPGYFN-------------QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN 472
VPG KA L ++ND A
Sbjct: 97 VPGPVTGGAVGGPFNNLKGIARLSDYPKA--LFPPGHSAILNDLEAGGFGVLAVSDAHVF 154
Query: 473 ETNPV 477
Sbjct: 155 SEYFG 159
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 32.0 bits (72), Expect = 0.69
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 1093 TKVWKEKSEKEQNQL---KKSDPIVLTIRSIV-------EKIRALEREVRYLENKSKLWM 1142
T +++ K +K Q++ K++ V R+I R + EVR + + +
Sbjct: 52 TVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRA 111
Query: 1143 ASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQP 1182
A KK + SKK + + + P
Sbjct: 112 AKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 32.5 bits (73), Expect = 0.75
Identities = 8/54 (14%), Positives = 21/54 (38%)
Query: 1142 MASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSP 1195
+++L + + + +P + + + KP+ Q ++P KP
Sbjct: 49 VSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 32.7 bits (74), Expect = 0.90
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 4/133 (3%)
Query: 896 PISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELE 955
P ++ T Y V + KQ+ + + S+ + + +N L++ + + + LE
Sbjct: 68 PANSERTPYKVRPVAIKQLSEREELIQSVLAQVAEQFSRAFKINELKAEVANHLAVLEKR 127
Query: 956 EYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV----VPIWERHR 1011
E + I ++ L + L+ L VP + ++
Sbjct: 128 VELEGLKVVEIEKCKSDIKKMREELAARSSRTNCPCKYSFLDNHKKLTPRRDVPTYPKYL 187
Query: 1012 EHQERPEALKSLN 1024
E EAL+
Sbjct: 188 LSPETIEALRKPT 200
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 32.3 bits (73), Expect = 0.97
Identities = 36/200 (18%), Positives = 83/200 (41%), Gaps = 10/200 (5%)
Query: 806 IELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTE 865
I+L E+ + A+ L+ L DE+E+ + K E+ + E
Sbjct: 92 IQLFEEELDRAQERLATALQKLEEA--EKAADESERGMKVIESRAQKDEEK----MEIQE 145
Query: 866 SQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDS-L 924
Q + A+ ++A + + + K+V ++ + +E R +S ++E+ + + + L
Sbjct: 146 IQLKEAKHIAEDADRKYEEVAR-KLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNL 204
Query: 925 NQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDG 984
+E + + + E + KL+ E + A + ID++ + L
Sbjct: 205 KSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 264
Query: 985 WNAEA--DVLENKLNEINSL 1002
+A + L++ LN++ S+
Sbjct: 265 LKYKAISEELDHALNDMTSI 284
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix
bundle, actin-binding, ATP-binding, calmodulin-binding,
coiled coil; 2.70A {Sus scrofa}
Length = 148
Score = 30.8 bits (69), Expect = 1.2
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1079 LFKQDKGLDTLINETKVWKEKSEKEQNQLKKS-DPIVLTIRSIVEKIRALEREVRYLENK 1137
L K+ + +++ K K++ K+ L+ S D ++ I+S + +++E L
Sbjct: 77 LKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKIKSTMMTREQIQKEYDALVKS 136
Query: 1138 SKLWMASLNKKK 1149
S + +++L KKK
Sbjct: 137 SAVLLSALQKKK 148
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_B* 2o01_B* 2wsc_B* 2wse_B* 2wsf_B*
3lw5_B*
Length = 740
Score = 32.1 bits (72), Expect = 1.3
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 999 INSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIEL 1058
+N++ + H +H + N S T+ L N ++ +N ++
Sbjct: 590 LNTIGWVTFYWHWKHLG---VWEGNVAQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGT 646
Query: 1059 KSLDTLSMV--WFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSD-PIVL 1115
+L + + + + W F+ +G + ET VW + N ++ D P+ L
Sbjct: 647 NNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVAL 706
Query: 1116 TI 1117
+I
Sbjct: 707 SI 708
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.0 bits (72), Expect = 1.4
Identities = 11/73 (15%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 1091 NETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKE 1150
E K +++ ++ ++LKK + + +K ++L+ EV + + ++ +
Sbjct: 355 AELKEAEKELHEKFDRLKKL--HQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQ 412
Query: 1151 STSKKKEDKPKNK 1163
+ + + K K
Sbjct: 413 AGGSQTLKRDKEK 425
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 31.6 bits (72), Expect = 1.8
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 661 NTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPS 720
N DE + +Y A S + K I+++ + +++ ++ G + +
Sbjct: 324 NKDEGSFF-LLYGAPGFSKDSESK--ISREDFMSGVKLSVPHANDLGLDAVTLQYTDWMD 380
Query: 721 NTYPQKKILTFNKYVGDFNFNV 742
+ K + VGD N
Sbjct: 381 DNNGIKNRDGLDDIVGDHNVIC 402
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 31.4 bits (71), Expect = 2.1
Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 44/222 (19%)
Query: 436 QSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495
+L+A AGL + L A ++ + + D+GA ST++ ++
Sbjct: 154 AGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRV----FLVLDIGAESTSLVLLR 209
Query: 496 YQVVKTKERGFVETHPQVSVLGVGYDRTL--GGLEMQIRLRDFLGKKFNEMKKTTKDVFE 553
R L G + +
Sbjct: 210 GDKPL-------------------AVRVLTLSGKDFTEAIARSFNLDLLA---------- 240
Query: 554 NPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGY 613
A+ K + + + + E + + + + +L +
Sbjct: 241 -----AEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIY--DAIRPVLVELTQELRR 293
Query: 614 PVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE 655
+E L+G G+++ + +T +GV
Sbjct: 294 SLEFFRIQL--EEASPEVGYLLGGGSKLRGLASLLTDTLGVN 333
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase,
hydrolase; NMR {Methanosarcina mazei}
Length = 101
Score = 29.3 bits (66), Expect = 2.2
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 562 FKEAGRLKNVLSANN--EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 619
F+ AG + V + + + ++++ +LV ++ D + + + L
Sbjct: 15 FRLAG-ISKVYETPDIPATESAVRSVLEDKSVGILV-------MHNDDIGNLPEVLRKNL 66
Query: 620 KSSAVPMDVISQVILVGAGTR-VPKVQEKITKVVGVELSK 658
S P V+ +G ++EKI + VGV+L K
Sbjct: 67 NESVQPT-----VVALGGSGSGSTSLREKIKQAVGVDLWK 101
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 30.8 bits (69), Expect = 2.8
Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 1133 YLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPK 1192
++ + ++ + + + + P N D+ P P P P
Sbjct: 197 FINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNN-PDNPNNPDEPNNPDNPNNPDNPD 255
Query: 1193 PSPSPVDETTTPE 1205
+ + P+
Sbjct: 256 NGDNN--NSDNPD 266
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 30.6 bits (68), Expect = 4.7
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 1135 ENKSKLWMASL---NKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTP 1191
+ K+ A L + K K K++K N++ K + E E+ + + +
Sbjct: 805 KEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKEND 864
Query: 1192 KPSPSPVDETTTPE 1205
+ + +
Sbjct: 865 EEFYKNKYSSKPYK 878
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 29.9 bits (68), Expect = 5.3
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE-AGRLKNVLSANNEHFAQIE 583
G E+ RL F +++ T V + KE ++++ + +E
Sbjct: 62 GKTEIARRLAKLANAPFIKVEATKFT------EVGYVGKEVDSIIRDLTDSAGGAIDAVE 115
Query: 584 G----LIDEID 590
IDEID
Sbjct: 116 QNGIVFIDEID 126
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 29.9 bits (66), Expect = 5.6
Identities = 31/183 (16%), Positives = 55/183 (30%), Gaps = 36/183 (19%)
Query: 809 VVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQ 868
+ EK+ E ++ + TD ++ + D E+ V+S
Sbjct: 22 LNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNETD 81
Query: 869 QSAEESVKNATQTPDADKKPKIVTVKEPIS---------ASETRYGVSTL----NEKQVE 915
E+ + + + V + + +S VS L E
Sbjct: 82 HKTNENGETDDNIETVMTQEQFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGM 141
Query: 916 KSLS-------KLDSLN-------------QIEHAKVR---KEKALNSLESLLFDAKSKL 952
S+S K SLN IE + K ++LN + LL + +KL
Sbjct: 142 SSMSPFLRKVVKPSSLNSDKIPYVAPTKKEYIELDILNKGWKLQSLNESKDLLRASFNKL 201
Query: 953 ELE 955
Sbjct: 202 SSI 204
>2ld3_A Myosin VI; molecular motor, lever arm extension, motor prote; NMR
{Mus musculus}
Length = 88
Score = 27.7 bits (61), Expect = 6.1
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1079 LFKQDKGLDTLINETKVWKEKSEKEQNQLKKS-DPIVLTIRSIVEKIRALEREVRYLENK 1137
L K+ + +++ K K + ++ L+ S D ++ I+S + +++E L
Sbjct: 12 LKKRLDKFNEVVSALKDGKPEVNRQIKNLEISIDALMAKIKSTMMTREQIQKEYDALVKS 71
Query: 1138 SKLWMASLNKKKE 1150
S+ +++L KKK+
Sbjct: 72 SEDLLSALQKKKQ 84
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 29.5 bits (67), Expect = 7.5
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 617 QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676
+ + + V L+G G R ++ + + G +L D ALGA A
Sbjct: 378 DVVHACGIK---PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQI 434
Query: 677 LSTGFK----VKKFITKDIVLYPIQVEFER 702
+ K + + + P +
Sbjct: 435 AANPEKSLIELLPQLPLEQSHLPDAQRYAA 464
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 29.6 bits (67), Expect = 8.0
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 661 NTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPS 720
N DE A VY A S IT+ +++ F SE G I+
Sbjct: 322 NKDEGTAF-LVYGAPGFSKDNN--SIITRKEFQEGLKIFFPGVSEFGKESILFHYTDWVD 378
Query: 721 NTYPQKKILTFNKYVGDFNFNV 742
+ P+ VGD+NF
Sbjct: 379 DQRPENYREALGDVVGDYNFIC 400
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and
DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli}
SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 29.7 bits (67), Expect = 8.1
Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 27/149 (18%)
Query: 900 SETRYGVSTLNEKQ-----VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL 954
+E + +S E + ++L KL ++ ++ ++ESL +
Sbjct: 85 AEQYHSISPKGEAASNPEVIARTLRKL-----KNQPELSEDTIKKAVESLSLEL------ 133
Query: 955 EEYSSV--AAPNES--KTIVDKIDEITNWLEE-DGWNAEADVLENKLNEINSLVVPIWER 1009
V A P E +T++ K+ E+ L++ D + + + L+ W
Sbjct: 134 -----VLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHT 188
Query: 1010 HREHQERPEALKSLNNALNV-SVTFYNSI 1037
+ RP + V + + +
Sbjct: 189 DEIRKLRPSPVDEAKWGFAVVENSLWQGV 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.361
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,547,278
Number of extensions: 1091927
Number of successful extensions: 2361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2293
Number of HSP's successfully gapped: 101
Length of query: 1212
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1108
Effective length of database: 3,798,009
Effective search space: 4208193972
Effective search space used: 4208193972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.3 bits)