BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18165
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1ZBT5|MED8_DROME Mediator of RNA polymerase II transcription subunit 8 OS=Drosophila
melanogaster GN=MED8 PE=2 SV=1
Length = 252
Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/259 (50%), Positives = 188/259 (72%), Gaps = 7/259 (2%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQR+EK E +L++V+ +LN++K ++ M+ K++ + +++NWPTFLDNFA++S + +
Sbjct: 1 MQRDEKLFELTLDTVLQRLNDLKLAVLSMIQKLELEYETINWPTFLDNFAIISSHLTGLT 60
Query: 61 KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
K+L+ ++ PP+RN TVLPL+++ +R++ L+ +TEGRVP F+HD+VPDYLRT+ +P E K
Sbjct: 61 KILAKEQCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVFSHDIVPDYLRTRPDPITEQK 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
++Q E KAA+L+ DAA KQ +NKV++HVLD+VSKAREEWE E+ +R G QTSS+ DT
Sbjct: 121 MLQNEQKAANLTNDAAMKQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADT 180
Query: 181 HSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKN 240
LVAAVGMG+GLK+ GP GPGMMV P R P G M PG +GK
Sbjct: 181 QLLVAAVGMGKGLKLTNYGP----GPGMMVPPS--IRAPSPMGGPAMSPGNV-QQQLGKA 233
Query: 241 PSGIKTNIKAAAAIHPYSR 259
PS +KTNIK+A +HP+SR
Sbjct: 234 PSAVKTNIKSANQVHPFSR 252
>sp|Q7Q6D6|MED8_ANOGA Mediator of RNA polymerase II transcription subunit 8 OS=Anopheles
gambiae GN=MED8 PE=3 SV=2
Length = 249
Score = 260 bits (664), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 133/261 (50%), Positives = 179/261 (68%), Gaps = 17/261 (6%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQL+ LE+V+ +LN++K + M+ +++ + +++NWPTFLDNFAL+S + +
Sbjct: 1 MQREEKQLDMLLEAVLNRLNDLKHSIGVMIHRLETEYETINWPTFLDNFALISSHLTGLM 60
Query: 61 KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
K+LS + P+RNLTVLPL+L PER+E LL+LTEGRVP F+HDL PDYLRTK +P E +
Sbjct: 61 KILSTEIGTPLRNLTVLPLMLTPERDEALLQLTEGRVPIFSHDLAPDYLRTKPDPGAESR 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
E KA +L+ +A+ KQ A +NKVI+HV DI+SKA+E+WE+E+ R G QTSS+ DT
Sbjct: 121 QAAHEAKANNLTVEASMKQVAQYNKVISHVWDIISKAKEDWENESSTRPGIQQTSSMADT 180
Query: 181 HSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAP----GGPGRPVGPGPGMPMGPGGQPMGM 236
+LVAAVG+G GL + G P G G+M+ P G P V P P
Sbjct: 181 QALVAAVGLGNGLTAPV---GPPTGAGVMIPPAIRQGSPMSAVSPSGNAP---------- 227
Query: 237 MGKNPSGIKTNIKAAAAIHPY 257
MGK PSGIKTNIK+A +HPY
Sbjct: 228 MGKMPSGIKTNIKSANQVHPY 248
>sp|Q16RR7|MED8_AEDAE Mediator of RNA polymerase II transcription subunit 8 OS=Aedes
aegypti GN=MED8 PE=3 SV=1
Length = 250
Score = 249 bits (636), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 184/261 (70%), Gaps = 16/261 (6%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQ++ LE+V+ +LN++K + M+ +++ + +++NWPTFLDNFAL+SG + ++
Sbjct: 1 MQREEKQMDMLLEAVLNRLNDLKHSIGAMIHRLETEYETINWPTFLDNFALISGHLTGLS 60
Query: 61 KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
K+LS + P+RNLTVLPL+L PER+E LL+LTEGR+P F+HDLVPDYLRTK +P E +
Sbjct: 61 KILSSEIGTPLRNLTVLPLLLTPERDEALLQLTEGRIPIFSHDLVPDYLRTKPDPGAESR 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
+ E KA +L D A KQ A +NKVI+HV DIVSKAREEW++EA +R G QTSSL DT
Sbjct: 121 MAAHEAKANNLQPDTAAKQVAQYNKVISHVWDIVSKAREEWDTEASSRPGIQQTSSLADT 180
Query: 181 HSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAP----GGPGRPVGPGPGMPMGPGGQPMGM 236
+LVAAVG+G GL M + GPG G+M+ P P V PG G P+G
Sbjct: 181 QALVAAVGVGNGLTMPV-GPGGVPNAGIMIPPAIRQASPMSAVSPGAG--------PLGK 231
Query: 237 MGKNPSGIKTNIKAAAAIHPY 257
M PSGIKTNIK+A +HPY
Sbjct: 232 M---PSGIKTNIKSANQVHPY 249
>sp|Q08BU1|MED8_XENTR Mediator of RNA polymerase II transcription subunit 8 OS=Xenopus
tropicalis GN=med8 PE=2 SV=1
Length = 267
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/274 (47%), Positives = 186/274 (67%), Gaps = 22/274 (8%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+ L++++ ++++IK+ LVG + K++++ D L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEACLDALISQVSDIKNSLVGFIHKLENEYDRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL ++KTP +RN ++PL+L+P+R+EE++RLTEGRVP F+H++VPD+LRTK +PDVE
Sbjct: 61 KVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEEL 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
QL +AA ++ +AAQKQ + NK+ +++LD +SK EE ESE G+ QT + TDT
Sbjct: 121 EKQLSAEAARITSEAAQKQVQSMNKMCSNLLDKISK--EERESELGSLRQNKQTFNPTDT 178
Query: 181 HSLVAAVGMGRGLKMIM-PGPGAPVGPG------MMVAPGGPGRPVGPGP--------GM 225
++LVAAV G+GL PG G P+ PG M+ G P+ P G+
Sbjct: 179 NALVAAVAFGKGLSNRRPPGQGGPMAPGQTGASSMLPNATGMQVPMSLPPNQQQQHMAGV 238
Query: 226 PMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
M G QP GK PS IKTNIK +A++HPY R
Sbjct: 239 SMSQGSQP----GKMPSSIKTNIK-SASMHPYQR 267
>sp|Q5HZZ6|MED8A_XENLA Mediator of RNA polymerase II transcription subunit 8-A OS=Xenopus
laevis GN=med8-a PE=2 SV=1
Length = 268
Score = 235 bits (600), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/275 (46%), Positives = 184/275 (66%), Gaps = 23/275 (8%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+ L++++ ++++IK+ LVG + K++++ D L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEACLDALISQVSDIKNSLVGFIHKLENEFDRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL ++KTP +RN ++PL+L+P+R+EE++RLTEGRVP F+H++VPD+LRTK +PDVE
Sbjct: 61 KVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEEL 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
QL +AA ++ +AAQKQ + NK+ +++LD +SK EE ESE G+ QT + TDT
Sbjct: 121 EKQLSAEAARITTEAAQKQVQSMNKMCSNLLDKISK--EERESELGSLRQNKQTFNPTDT 178
Query: 181 HSLVAAVGMGRGLKMIM-PGPGAPVGPGMMVA----PGGPGRPVGPGP-----------G 224
++LVAAV G+GL PG G P+ PG A P G P G
Sbjct: 179 NALVAAVAFGKGLSNRRPPGQGGPMAPGQTGASGMLPSAAGMQQVPMSLQSNQQQQHMAG 238
Query: 225 MPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
+ M G QP GK PS IKTNIK +A++HPY R
Sbjct: 239 VSMSQGNQP----GKMPSSIKTNIK-SASMHPYQR 268
>sp|Q6DD30|MED8B_XENLA Mediator of RNA polymerase II transcription subunit 8-B OS=Xenopus
laevis GN=med8-b PE=2 SV=1
Length = 269
Score = 234 bits (597), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/276 (46%), Positives = 183/276 (66%), Gaps = 24/276 (8%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+ L++++ ++++IK+ LVG + K++++ D L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEACLDALISQVSDIKNSLVGFIHKLENEYDRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL ++KTP +RN ++PL+L+P+R+EE++RLTEGRVP F+H++VPD+LRTK +PDVE
Sbjct: 61 KVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEEL 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
Q+ A L+ +AAQKQ + NK+ +++LD +SK EE ESE G+ QT + TDT
Sbjct: 121 EKQISADATRLTSEAAQKQVQSMNKMCSNLLDKISK--EERESELGSLRQNKQTFNPTDT 178
Query: 181 HSLVAAVGMGRGLKMIM-PGPGAPVGPGMMVA----PGGPGRPVGPGP------------ 223
++LVAAV G+GL PG G P+ PG A PG G P
Sbjct: 179 NALVAAVAFGKGLSNRRPPGQGGPMAPGQTGASGMIPGAAGMQQVPMSLSQNQQQQQHMA 238
Query: 224 GMPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
G+ M G QP GK PS IKTNIK +A++HPY R
Sbjct: 239 GVSMSQGSQP----GKMPSSIKTNIK-SASMHPYQR 269
>sp|Q9D7W5|MED8_MOUSE Mediator of RNA polymerase II transcription subunit 8 OS=Mus
musculus GN=Med8 PE=2 SV=1
Length = 268
Score = 230 bits (587), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 128/275 (46%), Positives = 181/275 (65%), Gaps = 23/275 (8%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+SL++++ ++ ++K+ L ++K++++ D L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEASLDALLNQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL H+KTP RN ++PL+L+P+R+E+L+R TEGRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
QL AA + DAAQKQ + NK+ +++L+ +SK EE ESE+G QT + DT
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPGDT 178
Query: 181 HSLVAAVGMGRGLKMIMP----GPGAPVGPGM-MVAPGGPGRPVGPGPGMP--------- 226
++LVAAV G+GL P GPG P PG + G G P PG P
Sbjct: 179 NALVAAVAFGKGLSNWRPSGSSGPGQPGQPGAGTILAGASGLPQVQMPGAPNQQQPMLSG 238
Query: 227 --MGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
M GQP GK PSGIKTNIK +A++HPY R
Sbjct: 239 VQMAQAGQP----GKMPSGIKTNIK-SASMHPYQR 268
>sp|Q96G25|MED8_HUMAN Mediator of RNA polymerase II transcription subunit 8 OS=Homo
sapiens GN=MED8 PE=1 SV=2
Length = 268
Score = 223 bits (567), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/275 (45%), Positives = 178/275 (64%), Gaps = 23/275 (8%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+SL++++ ++ ++K+ L + K++++ L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL H+KTP RN ++PL+L+P+R+E+L+R TEGRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
QL AA + DAAQKQ + NK+ +++L+ +SK EE ESE+G QT + TDT
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPTDT 178
Query: 181 HSLVAAVGMGRGLKMIMP----GPGAPVGPGMMVAPGG---------PGRPVGPGP---G 224
++LVAAV G+GL P GPG PG G G P P G
Sbjct: 179 NALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSG 238
Query: 225 MPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
+ M GQP GK PSGIKTNIK +A++HPY R
Sbjct: 239 VQMAQAGQP----GKMPSGIKTNIK-SASMHPYQR 268
>sp|Q6NYT1|MED8_DANRE Mediator of RNA polymerase II transcription subunit 8 OS=Danio
rerio GN=med8 PE=2 SV=1
Length = 267
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/271 (44%), Positives = 175/271 (64%), Gaps = 19/271 (7%)
Query: 2 QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
QREEKQLE+ LES+V ++ +K L ++K++++ D L WP+ LDNFAL+SGQ + I K
Sbjct: 3 QREEKQLEAFLESLVARVAHLKGSLQSFIYKLENEYDRLTWPSVLDNFALISGQLNTINK 62
Query: 62 VLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKL 121
+L ++KTP ++ ++PL+L+P+R+EEL +LTE RVP F+H++VPD+LRTK +P+VE +
Sbjct: 63 LLRNEKTPSYKSQVIIPLLLSPDRDEELAKLTEHRVPVFSHEIVPDHLRTKPDPEVEEQE 122
Query: 122 IQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTH 181
L +AA + + AQKQ NK+ +++L+ ++ RE+ +SE A + + DT+
Sbjct: 123 KHLSAEAARIGPEVAQKQIQALNKLCSNLLEKLNNPREDRDSETSALRQNKPSFNPADTN 182
Query: 182 SLVAAVGMGRGL-KMIMPGPGAPVGPG---MMVAP--------GGPGRPVG-PGPGMPMG 228
+LVAAVG G+GL K PGP AP PG M P G G G GP P
Sbjct: 183 ALVAAVGFGKGLSKCRPPGPVAPGHPGQPMMQTGPTLQQVTIAGASGHQAGMSGPVAPQQ 242
Query: 229 PGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
P GQP GK PS IKTNIK +A++HPY+R
Sbjct: 243 P-GQP----GKIPSNIKTNIK-SASMHPYNR 267
>sp|P0C5E6|MED8_CAEBR Mediator of RNA polymerase II transcription subunit 8
OS=Caenorhabditis briggsae GN=mdt-8 PE=3 SV=2
Length = 294
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 13/239 (5%)
Query: 2 QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
Q E +++ + + ++ ++ + K + +L +D ++ WP L+ F+ L+ +++
Sbjct: 17 QSEPEKIGQATDMMIKRVTDAKKMIEELLQMLDL-QEKCPWPDMLEKFSSLASAMASLQT 75
Query: 62 VLSHDKTPP--------IRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQ 113
+ P +R+ ++P L E +E LLR+T+GRV ++ H+LVP+YLRTK
Sbjct: 76 SVRKSGLPHGHEDHGQFLRSHVLVPQRLQYEPDEALLRVTQGRVFSWNHELVPEYLRTKP 135
Query: 114 EPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQ 173
P++E++ L+ + ++ + D KQ A +NK I +L +S + SEA
Sbjct: 136 NPEMENEEQMLDMERSAKAPDLVVKQIAAYNKNIEGLLGSLSNI-DRLHSEAIIEKP--- 191
Query: 174 TSSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQ 232
T S +T LV ++ +G ++ + P M APG G M PG Q
Sbjct: 192 THSREETMKLVKSILLGEAIRTLRTAGAPPTSTPMPAAPGSAGPSQSGSQVMNQAPGMQ 250
>sp|Q9U1W2|MED8_CAEEL Mediator of RNA polymerase II transcription subunit 8
OS=Caenorhabditis elegans GN=mdt-8 PE=3 SV=1
Length = 297
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 19/241 (7%)
Query: 2 QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
Q E +++ + + ++ ++ + K +++ L ++ ++ WP L+ F+ L+ S++
Sbjct: 15 QGEPEKIAQATDMMIKRVTDAK-KIIEELLQMLDLQEKCPWPLMLEKFSTLASFMSSLQS 73
Query: 62 VLSHDKTPP--------IRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQ 113
+ P +R+ ++ L E +E L R T+GRV ++ H LVP+YLRTK
Sbjct: 74 SVRKSGMPHGHEDYGQFLRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALVPEYLRTKP 133
Query: 114 EPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQ 173
P++E++ L+ + ++ S D +Q A +NK I +++ ++ + +EA
Sbjct: 134 NPEMENEEGMLDGERSAKSADLVVRQIAAYNKNIEGLINHLNSV-DRMHTEAAIEKP--- 189
Query: 174 TSSLTDTHSLVAAVGMGRGLKMIMP-GPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQ 232
T + +T +V ++ G G++ P P M AP GP P+ G Q
Sbjct: 190 TYNRDETAKIVKSILTGEGIRSQRTMAPAPPSSAPMTTAPSS----TGPSSSQPIS-GNQ 244
Query: 233 P 233
P
Sbjct: 245 P 245
>sp|P06914|CSP_PLAYO Circumsporozoite protein OS=Plasmodium yoelii yoelii PE=1 SV=1
Length = 367
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 23/36 (63%), Gaps = 7/36 (19%)
Query: 199 GPGAPVGPGMMVAPGGPGRPVGP----GPGMPMGPG 230
GPGAP GPG AP GPG P GP GPG P GPG
Sbjct: 140 GPGAPQGPG---APQGPGAPQGPGAPQGPGAPQGPG 172
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 23/36 (63%), Gaps = 7/36 (19%)
Query: 199 GPGAPVGPGMMVAPGGPGRPVGP----GPGMPMGPG 230
GPGAP GPG AP GPG P GP GPG P GPG
Sbjct: 152 GPGAPQGPG---APQGPGAPQGPGAPQGPGAPQGPG 184
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 23/36 (63%), Gaps = 7/36 (19%)
Query: 199 GPGAPVGPGMMVAPGGPGRPVGP----GPGMPMGPG 230
GPGAP GPG AP GPG P GP GPG P GPG
Sbjct: 164 GPGAPQGPG---APQGPGAPQGPGAPQGPGAPQGPG 196
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 23/36 (63%), Gaps = 7/36 (19%)
Query: 199 GPGAPVGPGMMVAPGGPGRPVGP----GPGMPMGPG 230
GPGAP GPG AP GPG P GP GPG P GPG
Sbjct: 188 GPGAPQGPG---APQGPGAPQGPGAPQGPGAPQGPG 220
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
Query: 199 GPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPG 230
GPGAP GPG AP GPG P GPG P GPG
Sbjct: 200 GPGAPQGPG---APQGPGAPQ--GPGAPQGPG 226
>sp|Q58A44|PCOTH_HUMAN Protein PCOTH OS=Homo sapiens GN=PCOTH PE=2 SV=2
Length = 107
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 199 GPGAPVGPGMMVAPGGPGRPVGP-GPGMPMGPGG 231
GP +P+GPG + P GPG+PVGP GP +P+GP G
Sbjct: 61 GPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSG 94
>sp|P53297|PBP1_YEAST PAB1-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PBP1 PE=1 SV=1
Length = 722
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 196 IMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMG----PGGQPM-GMMGKNPSGIKTNIKA 250
+M GA G G ++P P + GPG PMG PGG P GMMG PSG+ N +
Sbjct: 637 VMGSNGAEEG-GGNISPHVPAGFMAAGPGAPMGAFGYPGGIPFQGMMGSGPSGMPAN-GS 694
Query: 251 AAAIHPYSR 259
A H +SR
Sbjct: 695 AMHSHGHSR 703
>sp|O94646|MED8_SCHPO Mediator of RNA polymerase II transcription subunit 8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med8 PE=1 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 21/139 (15%)
Query: 5 EKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLN-WPTFLDNFALLSGQFSAIAKVL 63
EK +ES LE++ ++ +I L L I H +SL+ WPT NF +L Q +++ L
Sbjct: 7 EKTVES-LEAIRHRIAQIVQSLTHFL-AILHQSESLSPWPTIHKNFNILLSQIHSLSNNL 64
Query: 64 -SHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEH-KL 121
+H T ++ ++ P + P +E+E P L+ LRTK P+VE +
Sbjct: 65 AAHSHT--LQTTSIYPSLEFPVKEQE---------P-----LLTTLLRTKALPEVEEWEA 108
Query: 122 IQLEHKAASLSYDAAQKQA 140
L+ AS+S +K+A
Sbjct: 109 NTLQEYEASISSQPKKKEA 127
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 201 GAPVGPGMMVAPGGPGRPVGPGP-GMPMGPGGQPMGMMGKNPSGI 244
A +G GM+VAP G P P G P GPGG +G +P+G+
Sbjct: 150 AAVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMMIGRPAMDPNGV 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,116,202
Number of Sequences: 539616
Number of extensions: 5386030
Number of successful extensions: 33272
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 524
Number of HSP's that attempted gapping in prelim test: 17297
Number of HSP's gapped (non-prelim): 12121
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)