Query psy18165
Match_columns 259
No_of_seqs 61 out of 63
Neff 3.9
Searched_HMMs 46136
Date Sat Aug 17 00:17:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3583|consensus 100.0 9.1E-84 2E-88 575.8 20.5 254 1-259 1-263 (279)
2 PF10232 Med8: Mediator of RNA 100.0 1.6E-62 3.4E-67 437.3 0.7 220 1-259 1-226 (226)
3 PF12128 DUF3584: Protein of u 89.2 3.3 7.2E-05 45.5 11.0 137 3-159 504-649 (1201)
4 KOG1924|consensus 84.0 2.2 4.8E-05 46.0 6.0 32 20-53 360-392 (1102)
5 COG1937 Uncharacterized protei 77.3 12 0.00025 30.0 6.7 50 12-64 8-57 (89)
6 PRK11352 regulator protein Frm 72.4 18 0.00038 28.8 6.6 50 12-64 8-57 (91)
7 PF02583 Trns_repr_metal: Meta 60.2 40 0.00086 26.1 6.3 49 13-64 5-53 (85)
8 PRK15039 transcriptional repre 60.0 46 0.001 26.5 6.8 49 12-63 8-56 (90)
9 PF04513 Baculo_PEP_C: Baculov 52.7 54 0.0012 28.4 6.5 53 6-66 34-86 (140)
10 KOG3287|consensus 49.6 31 0.00067 32.2 4.8 51 6-56 149-214 (236)
11 PF13094 CENP-Q: CENP-Q, a CEN 39.9 2.3E+02 0.0049 23.8 12.0 37 3-39 27-63 (160)
12 PF14931 IFT20: Intraflagellar 39.3 1.5E+02 0.0032 24.8 6.9 48 113-165 14-61 (120)
13 TIGR00634 recN DNA repair prot 35.0 3.8E+02 0.0083 27.1 10.4 146 4-162 210-377 (563)
14 PF04124 Dor1: Dor1-like famil 34.2 4.1E+02 0.0088 25.1 10.2 95 3-155 14-108 (338)
15 PF05531 NPV_P10: Nucleopolyhe 33.7 1.6E+02 0.0034 23.1 5.8 55 6-69 14-71 (75)
16 PF12792 CSS-motif: CSS motif 33.4 1.1E+02 0.0025 25.1 5.5 63 2-77 1-64 (208)
17 PF08654 DASH_Dad2: DASH compl 33.1 1.2E+02 0.0026 24.7 5.4 50 11-60 15-72 (103)
18 PF08700 Vps51: Vps51/Vps67; 32.4 1.3E+02 0.0028 22.2 5.2 61 103-163 10-83 (87)
19 PF09403 FadA: Adhesion protei 31.4 1.8E+02 0.0038 24.6 6.2 60 3-65 48-107 (126)
20 PF08656 DASH_Dad3: DASH compl 31.3 45 0.00098 26.2 2.5 22 44-65 7-28 (78)
21 KOG1962|consensus 29.8 1.2E+02 0.0027 28.0 5.4 50 114-165 164-213 (216)
22 TIGR03545 conserved hypothetic 29.0 1.2E+02 0.0025 31.4 5.7 97 14-117 237-349 (555)
23 KOG1627|consensus 28.3 34 0.00073 30.3 1.5 28 96-123 105-135 (160)
24 TIGR03042 PS_II_psbQ_bact phot 27.4 2.3E+02 0.005 24.6 6.4 34 119-152 106-139 (142)
25 COG1938 Archaeal enzymes of AT 26.8 2.9E+02 0.0062 26.0 7.3 60 103-162 174-235 (244)
26 smart00523 DWA Domain A in dwa 26.8 1.2E+02 0.0025 25.2 4.3 31 4-36 2-32 (109)
27 PF01801 Cytomega_gL: Cytomega 26.6 60 0.0013 30.0 2.8 54 43-96 55-123 (215)
28 PF10444 Nbl1_Borealin_N: Nbl1 26.5 64 0.0014 23.4 2.4 35 15-49 14-59 (59)
29 PLN03194 putative disease resi 26.4 80 0.0017 28.5 3.5 22 144-165 163-184 (187)
30 PF06920 Ded_cyto: Dedicator o 25.9 50 0.0011 28.4 2.1 40 7-62 63-102 (178)
31 PF07106 TBPIP: Tat binding pr 24.9 4.2E+02 0.0092 22.3 8.1 61 116-187 90-154 (169)
32 PHA00666 putative protease 24.5 3.4E+02 0.0073 25.5 7.3 52 113-165 97-152 (233)
33 PF03670 UPF0184: Uncharacteri 24.2 1.2E+02 0.0026 24.2 3.7 24 7-30 37-60 (83)
34 PF10224 DUF2205: Predicted co 24.0 1.4E+02 0.003 23.5 4.0 23 3-25 23-45 (80)
35 PF05470 eIF-3c_N: Eukaryotic 23.5 1.7E+02 0.0037 30.6 5.8 51 17-71 27-77 (595)
36 PF08651 DASH_Duo1: DASH compl 23.5 1.4E+02 0.0031 23.1 4.1 27 138-164 8-34 (78)
37 PHA03302 envelope glycoprotein 23.4 76 0.0017 30.0 2.9 31 44-74 91-128 (253)
38 KOG4603|consensus 23.2 2.4E+02 0.0052 25.8 5.9 40 117-159 105-144 (201)
39 PHA03386 P10 fibrous body prot 22.0 3.2E+02 0.007 22.4 5.9 56 7-71 9-67 (94)
40 PF08651 DASH_Duo1: DASH compl 21.8 2.8E+02 0.006 21.5 5.3 25 41-65 40-64 (78)
41 PRK14959 DNA polymerase III su 21.7 8.7E+02 0.019 25.7 10.4 14 147-160 328-341 (624)
42 PF05082 Rop-like: Rop-like; 21.6 3.5E+02 0.0075 20.7 5.7 39 4-47 3-41 (66)
43 PF02646 RmuC: RmuC family; I 21.2 2.2E+02 0.0049 26.7 5.6 61 6-68 2-69 (304)
44 PRK00846 hypothetical protein; 21.1 3.4E+02 0.0074 21.2 5.7 49 114-162 8-58 (77)
45 PF00600 Flu_NS1: Influenza no 20.8 69 0.0015 29.2 2.0 35 19-53 171-205 (217)
46 cd07641 BAR_ASAP1 The Bin/Amph 20.3 4.2E+02 0.009 24.6 6.9 69 7-79 6-94 (215)
47 PF05873 Mt_ATP-synt_D: ATP sy 20.2 5.7E+02 0.012 22.1 7.5 98 10-150 25-122 (161)
48 PF12539 Csm1: Chromosome segr 20.2 58 0.0013 26.1 1.3 28 74-111 55-82 (90)
No 1
>KOG3583|consensus
Probab=100.00 E-value=9.1e-84 Score=575.84 Aligned_cols=254 Identities=35% Similarity=0.504 Sum_probs=230.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccc
Q psy18165 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLI 80 (259)
Q Consensus 1 mqrEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~ 80 (259)
||+|+|.++.++|.+|.||+|+|..|++||+|||.| +.|.||.|||||+.|+++|++|+++|+++.+|.|||+||||++
T Consensus 1 ~q~e~~~~~~~~d~~ikr~~d~k~~i~~llq~ldlq-~~~~wp~~le~fs~las~ms~l~~~~~k~~~p~lr~~~~~~~~ 79 (279)
T KOG3583|consen 1 YQGEPEKIAQATDMMIKRVTDAKKIIEELLQMLDLQ-EKCPWPLMLEKFSTLASFMSSLQSSVRKSGMPHLRSHVLVTQR 79 (279)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCccHHHHHHHHHHHHHHHHHHHHHHHccCCccccchhhhhh
Confidence 799999999999999999999999999999999999 6677999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18165 81 LNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREE 160 (259)
Q Consensus 81 LsperDe~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~~l~~~re~ 160 (259)
|++|+||.|+++|||||++|||++||||||||||||||++|.+|+.+|++++.|+|+|||++|||+|++||++|++.+++
T Consensus 80 ~~~e~detl~r~TeGRVpvfsH~lVPdyLRTkPdPe~E~~e~ql~~~aa~~saDaa~kQI~~yNK~is~ll~~lsk~~re 159 (279)
T KOG3583|consen 80 LQYEPDETLQRATEGRVPVFSHALVPDYLRTKPDPEMENEEGQLDGEAAAKSADAAVKQIAAYNKNISGLLNHLSKVDRE 159 (279)
T ss_pred hhcCchHHHHHHhcCcccccccccchHhhccCCChhhHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCChHHHHHHHHHHHhCCCCCCC----CCCCCCCCCCCcccC--CC-CCCCCCCCCCCCCCCCCCCC
Q psy18165 161 WESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMI----MPGPGAPVGPGMMVA--PG-GPGRPVGPGPGMPMGPGGQP 233 (259)
Q Consensus 161 we~e~~~~~~~~~T~s~~DT~~LVaAV~~GkGL~~~----~~~~~~~~~~~~m~~--~~-~~~~~~~~~~~~~~~~~~~~ 233 (259)
| +|++.++.+++|||++||++|||||+|||||+.+ .+||++.|-+|++++ |. .|+.+|+ +| +.+|.++.|
T Consensus 160 ~-tEs~~~~piqQT~n~~dT~~lVaaV~~GkGl~~~r~~~~~gPg~a~~pga~s~~gpS~~qpi~m~-qP-~~sg~q~~Q 236 (279)
T KOG3583|consen 160 H-TESAIEKPIQQTYNRDDTAKLVAAVLTGKGLRSQRTMAPAGPGSAPMPGAPSSTGPSSSQPISMN-QP-EYSGSQLRQ 236 (279)
T ss_pred H-HHhhhcCccccccChhHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCCCCcccCCCCCC-CC-ccChHHHHH
Confidence 9 9999999999999999999999999999999955 666665555665565 22 7777772 22 334445555
Q ss_pred CCCCCCCCCchhhhhhhcccc-CC-CCC
Q psy18165 234 MGMMGKNPSGIKTNIKAAAAI-HP-YSR 259 (259)
Q Consensus 234 ~~~~gk~ps~iktniksa~~~-hp-y~r 259 (259)
..++| +||+||||||+|+.. || |.+
T Consensus 237 ql~~g-~Ps~~ktniksas~hq~P~~s~ 263 (279)
T KOG3583|consen 237 QLSGG-QPSTSKTNIKSASHHQQPQYSH 263 (279)
T ss_pred hccCC-CCchhhhcccchhhccCccccc
Confidence 55566 999999999999766 78 754
No 2
>PF10232 Med8: Mediator of RNA polymerase II transcription complex subunit 8; InterPro: IPR019364 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Arc32, or Med8, is one of the subunits of the Mediator complex of RNA polymerase II. The region conserved contains two alpha helices putatively necessary for binding to other subunits within the core of the Mediator complex. The N terminus of Med8 binds to the essential core Head part of Mediator and the C terminus hinges to Med18 on the non-essential part of the Head that also includes Med20 []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3C0T_B 3RJ1_J 2HZS_I.
Probab=100.00 E-value=1.6e-62 Score=437.30 Aligned_cols=220 Identities=47% Similarity=0.687 Sum_probs=121.9
Q ss_pred Chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeecc
Q psy18165 1 MQR-EEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPL 79 (259)
Q Consensus 1 mqr-EeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl 79 (259)
||+ |+|||+.+||+|++|+++||+||++|+++|+++++.++||+|||+|++|++||++|+++|++++ |.||++||+|+
T Consensus 1 m~~~e~~ql~~aLe~ir~Rl~qL~~SL~~l~~~L~~~~~lp~W~slq~qf~il~~qL~sL~~~L~~~~-~~L~~~vv~P~ 79 (226)
T PF10232_consen 1 MQRIEEKQLEKALEAIRQRLAQLKHSLQSLIDKLEQSQPLPPWPSLQDQFAILSSQLSSLSKTLQHNK-PLLRNTVVYPL 79 (226)
T ss_dssp ----------TTTSTTTHHHHHHHHHHHHHHHHHT-T-SS---HHHHHHHHHHHHHHHHHHHHTTTSS-TTTTTS--TTS
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcc-ccccceeeecC
Confidence 885 9999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCCchHHHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHHHHHHHHHHH
Q psy18165 80 ILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQ-----AATFNKVITHVLDIV 154 (259)
Q Consensus 80 ~LsperDe~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e~aqKQ-----I~~~Nk~v~~ll~~l 154 (259)
.++|++|++ ++||||||||||||||+.++++..++++++.+.++|| |+++|+.|++++++|
T Consensus 80 ~~fP~~~~e--------------~ll~~lLRtKl~PeVE~~~~~~~~~~~~~~~~~~~~q~~~~~i~~~~k~~~~~~~~~ 145 (226)
T PF10232_consen 80 PLFPGRDEE--------------DLLPDLLRTKLDPEVEEWEAQLREEAANATPDAAQKQQAELAIAQYNKRISNWLDVV 145 (226)
T ss_dssp ---S--TTG--------------GGTTHHHHH----GGGTTTSTTT---TTS-S--SSS-SSTTTHHHHHHHHHHH--TT
T ss_pred CCCCCcChH--------------HHHHHHHhCCCCChHHHHHHHHHHHHHhcCcCHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999997 9999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhHHHhhccCCCCCCCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy18165 155 SKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPM 234 (259)
Q Consensus 155 ~~~re~we~e~~~~~~~~~T~s~~DT~~LVaAV~~GkGL~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (259)
+.+|++||.+......+++|++.+||++||++|++|+||+... .++.|+ ++++++++
T Consensus 146 t~lree~e~~~~~~~~~~~~~~~~dt~~lv~~~~~g~gl~~~~----------------~~~~~~-------g~~~~~~~ 202 (226)
T PF10232_consen 146 TGLREEWEFEDFSDREEEQTSEEEDTEALVAAVGFGKGLKPQF----------------EQQIPM-------GGGQQSQA 202 (226)
T ss_dssp TTTHHH---HTTT------------HHHHHH------SS-HH--------------------------------------
T ss_pred HHHHHHHhhhhccccccccccChhHHHHHHHHhhcchhccccc----------------chhhhh-------hhhhhhhh
Confidence 9999999999999999999999999999999999999999110 111122 12223345
Q ss_pred CCCCCCCCchhhhhhhccccCCCCC
Q psy18165 235 GMMGKNPSGIKTNIKAAAAIHPYSR 259 (259)
Q Consensus 235 ~~~gk~ps~iktniksa~~~hpy~r 259 (259)
++|||+||+||||||+|+ ||||+|
T Consensus 203 ~~~~~~p~~i~~~m~~g~-~~p~~r 226 (226)
T PF10232_consen 203 GQPGKPPSDIKTFMKTGS-MHPYQR 226 (226)
T ss_dssp -------------------------
T ss_pred hhhhhhhhhhhhhccccc-ccccCC
Confidence 679999999999999998 999998
No 3
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.19 E-value=3.3 Score=45.49 Aligned_cols=137 Identities=22% Similarity=0.342 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccC
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILN 82 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~Ls 82 (259)
++.++.+..|..+..++.+++..+..+-..|+.. .-+|=.||.+= ..|+-++|=|++..| .|...-+-|.+..
T Consensus 504 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~--~gSL~~fL~~~--~p~We~tIGKVid~e---LL~r~dL~P~l~~ 576 (1201)
T PF12128_consen 504 KERDQAEEELRQARRELEELRAQIAELQRQLDPQ--KGSLLEFLRKN--KPGWEQTIGKVIDEE---LLYRTDLEPQLVE 576 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHHHHhC--CCcHHHHhHhhCCHH---HhcCCCCCCeecC
Confidence 3445667778888899999999999999999755 77888899776 789999999988765 4666666676665
Q ss_pred CC-chH------HHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHH
Q psy18165 83 PE-REE------ELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHK--AASLSYDAAQKQAATFNKVITHVLDI 153 (259)
Q Consensus 83 pe-rDe------~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~--aa~~~~e~aqKQI~~~Nk~v~~ll~~ 153 (259)
.. .|- +|..+ -+|||.+++. +++++..+++.. .+..-.+.+.|++.++|+.++.+-..
T Consensus 577 ~~~~dslyGl~LdL~~I-----------~~pd~~~~ee--~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~ 643 (1201)
T PF12128_consen 577 DSGSDSLYGLSLDLSAI-----------DVPDYAASEE--ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKRE 643 (1201)
T ss_pred CCcccccceeEeehhhc-----------CCchhhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 220 12222 2799999887 777766666433 11223567888888889888888777
Q ss_pred HHHHHH
Q psy18165 154 VSKARE 159 (259)
Q Consensus 154 l~~~re 159 (259)
+..++-
T Consensus 644 ~~~~~~ 649 (1201)
T PF12128_consen 644 ITQAEQ 649 (1201)
T ss_pred HHHHHH
Confidence 665543
No 4
>KOG1924|consensus
Probab=83.96 E-value=2.2 Score=45.96 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=18.2
Q ss_pred HHHH-HHHHHHHHhhhccCCCCCchHHHHHHHHhh
Q psy18165 20 NEIK-SQLVGMLFKIDHDRDSLNWPTFLDNFALLS 53 (259)
Q Consensus 20 ~dlK-~sI~~li~kLE~e~e~l~WPsvLD~FAlLS 53 (259)
++.| ..+++|.++||+= +...-++-|=|-+|.
T Consensus 360 dE~~e~Dl~el~~rledi--r~emDd~~~~f~lL~ 392 (1102)
T KOG1924|consen 360 DEHKEDDLEELSGRLEDI--RAEMDDANEVFELLA 392 (1102)
T ss_pred hhhhhhhHHHHHhHHHhh--hhhhccHHHHHHHHH
Confidence 3444 5666677777643 555555555565554
No 5
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.31 E-value=12 Score=30.02 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhc
Q psy18165 12 LESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLS 64 (259)
Q Consensus 12 L~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~ 64 (259)
...+++|+.-++..+.++..+||. .-.-.+||-.+|-+.|.++.++..+=
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlEe---~~~C~dVl~QIaAVr~Al~~~~~~vl 57 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLEE---DRDCIDVLQQIAAVRGALNGLMREVL 57 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999984 45568999999999999999988553
No 6
>PRK11352 regulator protein FrmR; Provisional
Probab=72.42 E-value=18 Score=28.81 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhc
Q psy18165 12 LESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLS 64 (259)
Q Consensus 12 L~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~ 64 (259)
-..+++|++.++..|.++..++|.+ . .-.+||-.++-+.+.|+.+...+=
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~-~--~C~dil~Ql~Avr~Al~~~~~~il 57 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGD-A--ECRAILQQIAAVRGAANGLMAEVL 57 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-C--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999965 3 568999999999999998887543
No 7
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=60.18 E-value=40 Score=26.11 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhc
Q psy18165 13 ESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLS 64 (259)
Q Consensus 13 ~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~ 64 (259)
..|+.|++-++.-|.++..++|.+ -.-.++|-.++.+.+.|+.+...+=
T Consensus 5 ~~ll~RL~rIeGQv~gI~~Miee~---~~C~dIl~Qi~Av~~Al~~~~~~vl 53 (85)
T PF02583_consen 5 KDLLNRLKRIEGQVRGIERMIEED---RDCEDILQQIAAVRSALDKVGKLVL 53 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---E-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999844 4568999999999999999887654
No 8
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=59.95 E-value=46 Score=26.53 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHh
Q psy18165 12 LESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVL 63 (259)
Q Consensus 12 L~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L 63 (259)
-..+++|+.-++..|.++..++|.+ =.-.++|-.++-+-|.++.+...+
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~---~~C~dIl~Ql~Avr~Al~~~~~~v 56 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEP---HECAAVLQQIAAIRGAVNGLMREV 56 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999855 266899999999999999988865
No 9
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=52.70 E-value=54 Score=28.38 Aligned_cols=53 Identities=19% Similarity=0.369 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccC
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHD 66 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~e 66 (259)
-||+..+++|..|+.++-..|..++.-+|.. +=+-|.-|.-.+.+|+..+|+|
T Consensus 34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~--------l~~l~~~L~~aln~Lq~~~rne 86 (140)
T PF04513_consen 34 AQLTTILDAIQTQLNALSTDLTNLLADLDTR--------LDTLLTNLNDALNQLQDTLRNE 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999888753 3333455666777777766654
No 10
>KOG3287|consensus
Probab=49.59 E-value=31 Score=32.19 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhccCCCCCchHHHHHHHHh-hHHH
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGMLFK--------------IDHDRDSLNWPTFLDNFALL-SGQF 56 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~li~k--------------LE~e~e~l~WPsvLD~FAlL-Sgql 56 (259)
.+|+..++.|..+++-+|+.|..+.+. +|..++++||=++...+++| .|++
T Consensus 149 ~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~i 214 (236)
T KOG3287|consen 149 EQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGII 214 (236)
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhh
Confidence 399999999999999999999887653 46678999999999988854 4444
No 11
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.89 E-value=2.3e+02 Score=23.84 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDS 39 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~ 39 (259)
+..++||..|.+....++.|+.-|......||.+|+.
T Consensus 27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~ 63 (160)
T PF13094_consen 27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEY 63 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999888877543
No 12
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=39.33 E-value=1.5e+02 Score=24.82 Aligned_cols=48 Identities=15% Similarity=0.354 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy18165 113 QEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEA 165 (259)
Q Consensus 113 pdPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~~l~~~re~we~e~ 165 (259)
.||++=..-..|..+. ....+.|..||++|..+++.++..-++.|.+-
T Consensus 14 ldp~~~~~t~~Lk~ec-----~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eK 61 (120)
T PF14931_consen 14 LDPEKADQTQELKEEC-----KEFVEKISEFQKIVKGFIEILDELAKRVENEK 61 (120)
T ss_pred cChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777776655 44677899999999999999987767766653
No 13
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.04 E-value=3.8e+02 Score=27.12 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHH--------HHHhcc------CCCC
Q psy18165 4 EEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAI--------AKVLSH------DKTP 69 (259)
Q Consensus 4 EeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L--------~k~L~~------ek~P 69 (259)
|++.|+. --..++.+..|+..+...+.-|+.+ +....++++|...-+...|..+ ...|.. |..-
T Consensus 210 E~e~L~~-e~~~L~n~e~i~~~~~~~~~~L~~~-~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~ 287 (563)
T TIGR00634 210 EDEALEA-EQQRLSNLEKLRELSQNALAALRGD-VDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATR 287 (563)
T ss_pred cHHHHHH-HHHHHhCHHHHHHHHHHHHHHHhCC-ccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555665 3334556677888888888777432 1222334555554444443332 000000 0011
Q ss_pred CCcceeeeccccCCCchHHHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcC--------CHHHHHHHHH
Q psy18165 70 PIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASL--------SYDAAQKQAA 141 (259)
Q Consensus 70 ~Lrn~vvlPl~LsperDe~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~--------~~e~aqKQI~ 141 (259)
-|+++.= +-+-||+-....+.|+..++. |.-|..+.++.-...++.-...+ ..+..++++.
T Consensus 288 ~l~~~~~-----~l~~dp~~L~ele~RL~~l~~------LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~ 356 (563)
T TIGR00634 288 ELQNYLD-----ELEFDPERLNEIEERLAQIKR------LKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVD 356 (563)
T ss_pred HHHHHHH-----hCCCCHHHHHHHHHHHHHHHH------HHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1222110 125566666667778876654 55566666665555443221111 2455677777
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q psy18165 142 TFNKVITHVLDIVSKAREEWE 162 (259)
Q Consensus 142 ~~Nk~v~~ll~~l~~~re~we 162 (259)
.+-+-+..+...|+..|..+-
T Consensus 357 ~l~~~l~~~a~~Ls~~R~~~a 377 (563)
T TIGR00634 357 KLEEELDKAAVALSLIRRKAA 377 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 14
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=34.23 E-value=4.1e+02 Score=25.11 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccC
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILN 82 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~Ls 82 (259)
+|...|+.....+...+.+|-...+..+ +++. +.. -++.+.|.-+..++..|.+.|
T Consensus 14 ~Ep~~L~~~~~~l~~ql~~La~~~y~~f--i~~~-~~~--~~i~~~~~~~~~~l~~L~~~l------------------- 69 (338)
T PF04124_consen 14 SEPQSLSEEIASLDAQLQSLAFRNYKTF--IDNA-ECS--SDIRQELSSLSDSLDSLLDSL------------------- 69 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHH-HHH--HHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3555666666666666666665555554 2221 111 455566666677777777655
Q ss_pred CCchHHHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy18165 83 PEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVS 155 (259)
Q Consensus 83 perDe~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~~l~ 155 (259)
|++.+.+..+...+..+..+ .|.....=...+.|+|+++
T Consensus 70 --------------------------------~~L~~~~~~f~~~~~~~~~~--r~~~~~~l~~~~~l~diLE 108 (338)
T PF04124_consen 70 --------------------------------PELDEACQRFSSKAQKISEE--RKKASLLLENHDRLLDILE 108 (338)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 88889998888777655444 4444444445566666664
No 15
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=33.66 E-value=1.6e+02 Score=23.10 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCC
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVG---MLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTP 69 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~---li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P 69 (259)
|.++.=++++-.+|++++..+.. +-.|||-+ +.-| .-|..+++.++.+|..+..|
T Consensus 14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~------~~~l---~~l~~~V~~I~~iL~~~~~p 71 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQ------SAQL---TTLNTKVNEIQDILNPDIVP 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH------HHHH---HHHHHHHHHHHHHhCCccCC
Confidence 34445556666666666665444 55555433 1222 23444667777777655444
No 16
>PF12792 CSS-motif: CSS motif domain associated with EAL ; InterPro: IPR024744 This domain, with its characteristic highly conserved CSS sequence motif, is found N-terminal to the EAL domain (PF00563 from PFAM), found in many putative cyclic diguanylate phosphodiesterases.
Probab=33.42 E-value=1.1e+02 Score=25.09 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHH-HHHHHHHhccCCCCCCcceeee
Q psy18165 2 QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQ-FSAIAKVLSHDKTPPIRNLTVL 77 (259)
Q Consensus 2 qrEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgq-l~~L~k~L~~ek~P~Lrn~vvl 77 (259)
|+++.+++...+.++.|++++-......+..++.-.. .-|+-. +..|.+++-. .|.+|...++
T Consensus 1 ~~~~~~~~~~a~~~~~~~e~~~~~~~~~~~~~~~~~~-----------~~Cs~~~~~~Lr~~~~~--~~~ir~i~~~ 64 (208)
T PF12792_consen 1 QQEQRDLDTYAQRALQRIESVLDQARQALDALLPLTG-----------QPCSPAHLNALRQIVAR--SPYIRDIGLV 64 (208)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCCCHHHHHHHHHHHHh--chhhhheeEE
Confidence 6788999999999999999988888888877743311 224554 6667666653 4566655554
No 17
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=33.09 E-value=1.2e+02 Score=24.72 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC--------CCCchHHHHHHHHhhHHHHHHH
Q psy18165 11 SLESVVMKLNEIKSQLVGMLFKIDHDRD--------SLNWPTFLDNFALLSGQFSAIA 60 (259)
Q Consensus 11 aL~ai~~Rv~dlK~sI~~li~kLE~e~e--------~l~WPsvLD~FAlLSgql~~L~ 60 (259)
+|..|..-..+|+..|+.|-.||++=.+ --||++|+..-++-|..+....
T Consensus 15 ~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is~AS~~l~~~~ 72 (103)
T PF08654_consen 15 ALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAISMASLSLAKYS 72 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHHHhhhhhcc
Confidence 3677777777777777777777654322 2489999766555555544433
No 18
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=32.41 E-value=1.3e+02 Score=22.25 Aligned_cols=61 Identities=10% Similarity=0.235 Sum_probs=43.3
Q ss_pred CcccccccCCCCchHHHHHHHHHHHHhcCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy18165 103 DLVPDYLRTKQEPDVEHKLIQLEHKAASLSYD-------------AAQKQAATFNKVITHVLDIVSKAREEWES 163 (259)
Q Consensus 103 dvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e-------------~aqKQI~~~Nk~v~~ll~~l~~~re~we~ 163 (259)
..|-++|++....++...+..|..+......| .+.+.|..+..-+..|-+.++.....++.
T Consensus 10 ~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~ 83 (87)
T PF08700_consen 10 EYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQS 83 (87)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777999899998888887665543322 26777888888888777777777666653
No 19
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.42 E-value=1.8e+02 Score=24.65 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhcc
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSH 65 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ 65 (259)
++++++..++++-+....+++..|++.+.+|+.. ...-|=. |.|.=|-.++.++.+-|..
T Consensus 48 ~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-~~~r~yk--~eYk~llk~y~~~~~~L~k 107 (126)
T PF09403_consen 48 NEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD-SKVRWYK--DEYKELLKKYKDLLNKLDK 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGSTTH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cchhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 5778888889999999999999999999999987 7777855 7887777777777766544
No 20
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=31.31 E-value=45 Score=26.20 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=19.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhcc
Q psy18165 44 TFLDNFALLSGQFSAIAKVLSH 65 (259)
Q Consensus 44 svLD~FAlLSgql~~L~k~L~~ 65 (259)
+|||.|+-|+.+|.+|...|+.
T Consensus 7 ~VL~eY~~La~~L~~L~~~l~~ 28 (78)
T PF08656_consen 7 EVLDEYQRLADNLKTLSDTLKD 28 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999997774
No 21
>KOG1962|consensus
Probab=29.78 E-value=1.2e+02 Score=27.96 Aligned_cols=50 Identities=30% Similarity=0.349 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy18165 114 EPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEA 165 (259)
Q Consensus 114 dPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~~l~~~re~we~e~ 165 (259)
.-|+|.+...|+.. ....++..||...+|+-.|.|++.-++.+++.++..
T Consensus 164 ~~el~~~~~~Le~~--~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 164 ETELEKKQKKLEKA--QKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 33555555555543 335788999999999999999999999999988664
No 22
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.05 E-value=1.2e+02 Score=31.44 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCC---------------CCCCcceeeec
Q psy18165 14 SVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDK---------------TPPIRNLTVLP 78 (259)
Q Consensus 14 ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek---------------~P~Lrn~vvlP 78 (259)
.+...++..+..+..-+..|+.- +.-.|-.+-..|++=+|.+..+...|=.++ .|++..-
T Consensus 237 ~~~~~l~~~~~~~~~~~~~lk~a-p~~D~~~L~~~~~~~~~~~~~~~~~L~g~~i~~~~~~~~~~y~~~~p~i~~~---- 311 (555)
T TIGR03545 237 SAKNDLQNDKKQLKADLAELKKA-PQNDLKRLENKYAIKSGDLKNFAVDLFGPEIRKYLQKFLKYYDQAEPLLNKS---- 311 (555)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhc-cHhHHHHHHHHhCCCcccHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccc----
Confidence 33335555555555666666654 677888999999988888877776665554 2333222
Q ss_pred cccCCCchHHHHhhhcCCcccCCCCcc-cccccCCCCchH
Q psy18165 79 LILNPEREEELLRLTEGRVPAFTHDLV-PDYLRTKQEPDV 117 (259)
Q Consensus 79 l~LsperDe~L~~~TEgRV~~f~HdvV-PDyLRTKpdPev 117 (259)
-.....|+..++-+||-..|.++.. ||.|=-+.+=..
T Consensus 312 --~~~~~~e~~~~~~~G~~i~F~~~~~~P~~lIk~~~vs~ 349 (555)
T TIGR03545 312 --KKEPKEEAVETLANGEDYDFKDDNPYPDFLIKKADVSG 349 (555)
T ss_pred --hhccchhhhccccCCceEEccCCCCCCcEEEEeeeEee
Confidence 1223344455556799999999994 999866554433
No 23
>KOG1627|consensus
Probab=28.25 E-value=34 Score=30.31 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=23.0
Q ss_pred CcccCCCCccccc---ccCCCCchHHHHHHH
Q psy18165 96 RVPAFTHDLVPDY---LRTKQEPDVEHKLIQ 123 (259)
Q Consensus 96 RV~~f~HdvVPDy---LRTKpdPevE~~e~~ 123 (259)
=++.|+.|.+||| =|||.||.-|+...-
T Consensus 105 la~~~spDwq~D~EsY~~tKLD~~see~k~~ 135 (160)
T KOG1627|consen 105 LAPAFSPDWQPDYESYTWTKLDPGSEETKEL 135 (160)
T ss_pred cccccCccccccccceeeeecCCCCHHHHHH
Confidence 3688999999996 799999998876543
No 24
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=27.43 E-value=2.3e+02 Score=24.55 Aligned_cols=34 Identities=24% Similarity=0.118 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q psy18165 119 HKLIQLEHKAASLSYDAAQKQAATFNKVITHVLD 152 (259)
Q Consensus 119 ~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~ 152 (259)
.....|+..|...+...|+|+-...=.-.+..++
T Consensus 106 ~~L~~LD~AA~~kd~~~a~k~Y~~av~~~dafl~ 139 (142)
T TIGR03042 106 DDLEKLDEAARLQDGPQAQKAYQKAAADFDAYLD 139 (142)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 3445566667777777777765544444444443
No 25
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=26.84 E-value=2.9e+02 Score=26.00 Aligned_cols=60 Identities=15% Similarity=0.303 Sum_probs=46.0
Q ss_pred CcccccccCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy18165 103 DLVPDYLRTKQEPDVEHKLIQLEHKAAS--LSYDAAQKQAATFNKVITHVLDIVSKAREEWE 162 (259)
Q Consensus 103 dvVPDyLRTKpdPevE~~e~~L~~~aa~--~~~e~aqKQI~~~Nk~v~~ll~~l~~~re~we 162 (259)
-++++-..+.|||+.-...-..-.+.-+ ++.|...||...+...+..+.+.+....+.-+
T Consensus 174 ~ll~et~~~~PDP~AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~ 235 (244)
T COG1938 174 VLLAETFGDRPDPRAAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVE 235 (244)
T ss_pred EEeccccCCCCChHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567777888999987777666666554 57788999999999999999998876654333
No 26
>smart00523 DWA Domain A in dwarfin family proteins.
Probab=26.84 E-value=1.2e+02 Score=25.16 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy18165 4 EEKQLESSLESVVMKLNEIKSQLVGMLFKIDHD 36 (259)
Q Consensus 4 EeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e 36 (259)
+||-.+.++++|+.|+++ +.+++|+..++..
T Consensus 2 ~ek~~~k~~~sL~KklK~--k~le~L~~AV~s~ 32 (109)
T smart00523 2 EEKWAKKATESLLKKLKK--KQLEELLQAVESK 32 (109)
T ss_pred cHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcC
Confidence 577788888888888875 3788888777755
No 27
>PF01801 Cytomega_gL: Cytomegalovirus glycoprotein L ; InterPro: IPR002689 Glycoprotein L from Cytomegalovirus serves a chaperone for the correct folding and surface expression of glycoprotein H (gH) []. Glycoprotein L is a member of the heterotrimeric gCIII complex of glycoprotein which also includes gH and gO and has an essential role in viral fusion [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=26.62 E-value=60 Score=30.03 Aligned_cols=54 Identities=30% Similarity=0.399 Sum_probs=37.1
Q ss_pred hHHHHHHHHhh---HHHHHHHHHhccCCCC----CCcceeee----ccccCCC----chHHHHhhhcCC
Q psy18165 43 PTFLDNFALLS---GQFSAIAKVLSHDKTP----PIRNLTVL----PLILNPE----REEELLRLTEGR 96 (259)
Q Consensus 43 PsvLD~FAlLS---gql~~L~k~L~~ek~P----~Lrn~vvl----Pl~Lspe----rDe~L~~~TEgR 96 (259)
-+|||.|+||- .||.+|..+||+|..| +++.+--- |-+.+.= |--+|.++|=++
T Consensus 55 d~FLd~l~LLhNN~~QLR~LLtLlrSd~ap~Wm~~m~GY~~Cg~~~~~IyTCv~dvCr~ydl~~L~Y~~ 123 (215)
T PF01801_consen 55 DEFLDQLALLHNNPNQLRVLLTLLRSDSAPDWMKFMNGYSECGGPSSAIYTCVDDVCRQYDLERLTYTN 123 (215)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHCccccchHHHHhcCccccCCCCCceEEehhhhhhhcChhhccccc
Confidence 37999999996 5999999999999988 55655332 1222221 234577777665
No 28
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=26.46 E-value=64 Score=23.35 Aligned_cols=35 Identities=14% Similarity=0.409 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC-----------CCCchHHHHHH
Q psy18165 15 VVMKLNEIKSQLVGMLFKIDHDRD-----------SLNWPTFLDNF 49 (259)
Q Consensus 15 i~~Rv~dlK~sI~~li~kLE~e~e-----------~l~WPsvLD~F 49 (259)
+-.|+..+|...+.++..++..++ ..+|-+|+++|
T Consensus 14 v~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~vR~m~~~d~~~~y 59 (59)
T PF10444_consen 14 VEERIRRLRAQYENLLQSLRNRLEMELLRIPKAVRKMTMRDFLEKY 59 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHTSBHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhhcC
Confidence 456677777777776666665543 56777777654
No 29
>PLN03194 putative disease resistance protein; Provisional
Probab=26.43 E-value=80 Score=28.51 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhh
Q psy18165 144 NKVITHVLDIVSKAREEWESEA 165 (259)
Q Consensus 144 Nk~v~~ll~~l~~~re~we~e~ 165 (259)
.++|+.+.+.|.+.-.+.|.|-
T Consensus 163 ~e~i~~iv~~v~k~l~~~~~~~ 184 (187)
T PLN03194 163 SEVVTMASDAVIKNLIELEEEK 184 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4555555555555556666654
No 30
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=25.90 E-value=50 Score=28.43 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHH
Q psy18165 7 QLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKV 62 (259)
Q Consensus 7 qLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~ 62 (259)
-||.|++.|..|..+|...+.... .++..|+..|++....
T Consensus 63 Pie~Aie~i~~k~~eL~~~~~~~~----------------~~~~~L~~~L~G~v~a 102 (178)
T PF06920_consen 63 PIENAIEDIEKKNKELEELINSYK----------------PNINPLQMLLQGSVDA 102 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS----------------S-HHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----------------cchhHHHHHhcccccc
Confidence 589999999999998776554432 5567777777765553
No 31
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.89 E-value=4.2e+02 Score=22.34 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCChHHHHHHHHHH
Q psy18165 116 DVEHKLIQLEHK----AASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAV 187 (259)
Q Consensus 116 evE~~e~~L~~~----aa~~~~e~aqKQI~~~Nk~v~~ll~~l~~~re~we~e~~~~~~~~~T~s~~DT~~LVaAV 187 (259)
+++.+.+.|.++ .+.++.+...++|.++-.-|..+-+.|...+..|. .-+++|...+....
T Consensus 90 ~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~-----------~vs~ee~~~~~~~~ 154 (169)
T PF07106_consen 90 ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSK-----------PVSPEEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHH
Confidence 344444444444 33567888999999999999999999988765332 15677877776543
No 32
>PHA00666 putative protease
Probab=24.47 E-value=3.4e+02 Score=25.53 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=35.7
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHhh
Q psy18165 113 QEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDI----VSKAREEWESEA 165 (259)
Q Consensus 113 pdPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~~----l~~~re~we~e~ 165 (259)
+|+++-.+-+.+-.+. +++.|+|||-+..|+|++..+-.. ..+..++|....
T Consensus 97 lD~~~l~~F~~~a~El-gLtqEQAQklvD~y~ki~~~~qq~qaeawqk~~e~W~~~~ 152 (233)
T PHA00666 97 LDTGALGAFEPVAREL-NLTNEQAQKVVDLYTKILPVVQQRQAEAWQKTTEQWAADS 152 (233)
T ss_pred CCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666665555555544 789999999999998887654432 333578886554
No 33
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.17 E-value=1.2e+02 Score=24.25 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18165 7 QLESSLESVVMKLNEIKSQLVGML 30 (259)
Q Consensus 7 qLe~aL~ai~~Rv~dlK~sI~~li 30 (259)
+|..+||.|-.|-.+|...|..|+
T Consensus 37 ~Lns~LD~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 37 QLNSCLDHLEQRNDHLHAQLQELL 60 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 455666666666666666666665
No 34
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.99 E-value=1.4e+02 Score=23.53 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQ 25 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~s 25 (259)
++-+.|..+|++|..|+.++|.-
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E 45 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666644443
No 35
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=23.50 E-value=1.7e+02 Score=30.56 Aligned_cols=51 Identities=16% Similarity=0.369 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCC
Q psy18165 17 MKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPI 71 (259)
Q Consensus 17 ~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~L 71 (259)
.|..+|+..|..+-.... .-+|-++++.|--|..++..-.++-.++.+|.+
T Consensus 27 Kr~del~~~i~~i~n~~k----i~Dw~~i~~eFd~L~k~~~K~~~~~~~~~~P~~ 77 (595)
T PF05470_consen 27 KRFDELEEIIKQIRNAMK----INDWSSILTEFDKLNKQLEKSKKIQQNEGIPRF 77 (595)
T ss_pred HHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHHHhhhhhcCCCChh
Confidence 577777777777766664 458999999999999999887776667777743
No 36
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.46 E-value=1.4e+02 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy18165 138 KQAATFNKVITHVLDIVSKAREEWESE 164 (259)
Q Consensus 138 KQI~~~Nk~v~~ll~~l~~~re~we~e 164 (259)
.++..+|.+|+++.+.|.+++.+.+.-
T Consensus 8 ~~Lr~IN~~ie~~~~~L~~a~~~~~~v 34 (78)
T PF08651_consen 8 EQLRKINPVIEGLIETLRSAKSNMNRV 34 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999998877643
No 37
>PHA03302 envelope glycoprotein L; Provisional
Probab=23.36 E-value=76 Score=30.02 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=26.7
Q ss_pred HHHHHHHHhh---HHHHHHHHHhccCCCC----CCcce
Q psy18165 44 TFLDNFALLS---GQFSAIAKVLSHDKTP----PIRNL 74 (259)
Q Consensus 44 svLD~FAlLS---gql~~L~k~L~~ek~P----~Lrn~ 74 (259)
+|||.|+||- .||.+|..++|+|..| +|+.+
T Consensus 91 eFLd~l~LL~NNp~QLRtLLTLlrSd~ap~Wm~fl~GY 128 (253)
T PHA03302 91 EFLDQLALLHNNPDQLRTLLTLLRSDSAPDWMKFLNGY 128 (253)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCcccHHHHhcCh
Confidence 7999999996 4999999999999988 55554
No 38
>KOG4603|consensus
Probab=23.17 E-value=2.4e+02 Score=25.77 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18165 117 VEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKARE 159 (259)
Q Consensus 117 vE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~~l~~~re 159 (259)
||++.+.|. .+++.+..|+.|+.|-|.|-.--+.|.+.|+
T Consensus 105 veaEik~L~---s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 105 VEAEIKELS---SALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHH---HhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 4678999999999999999998888887765
No 39
>PHA03386 P10 fibrous body protein; Provisional
Probab=22.01 E-value=3.2e+02 Score=22.39 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCC
Q psy18165 7 QLESSLESVVMKLNEIKSQLVGMLF---KIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPI 71 (259)
Q Consensus 7 qLe~aL~ai~~Rv~dlK~sI~~li~---kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~L 71 (259)
+|-.++.++=.+|..|..++.++-. +||-+ + ....-|...++.++.+|..+..|-+
T Consensus 9 ~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~------~---~qL~~l~tkV~~Iq~iLn~d~iPd~ 67 (94)
T PHA03386 9 QILDAVQEVDTKVDALQTQLNGLEEDSQPLDGL------P---AQLTELDTKVSDIQSILTGDEVPDP 67 (94)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcchhhhhH------H---HHHHHHHHHHHHHHHhcCcccCCCC
Confidence 4555566666666666666666553 33322 1 2335567788999999988767654
No 40
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.79 E-value=2.8e+02 Score=21.50 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.1
Q ss_pred CchHHHHHHHHhhHHHHHHHHHhcc
Q psy18165 41 NWPTFLDNFALLSGQFSAIAKVLSH 65 (259)
Q Consensus 41 ~WPsvLD~FAlLSgql~~L~k~L~~ 65 (259)
++-.+||+|.-|-+|-+.-.++|-+
T Consensus 40 ~t~~LLd~w~~IlSQte~~~~Ll~d 64 (78)
T PF08651_consen 40 STNTLLDKWIRILSQTEHTQRLLLD 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999998888765
No 41
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.69 E-value=8.7e+02 Score=25.75 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q psy18165 147 ITHVLDIVSKAREE 160 (259)
Q Consensus 147 v~~ll~~l~~~re~ 160 (259)
+...|+.+..++.+
T Consensus 328 L~~~l~~il~~~~~ 341 (624)
T PRK14959 328 IHACWQMTLEGQRR 341 (624)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555444
No 42
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=21.62 E-value=3.5e+02 Score=20.75 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHH
Q psy18165 4 EEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLD 47 (259)
Q Consensus 4 EeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD 47 (259)
+-+.|..-+--+-+|+.++|-.||+|.--| ..+|..+++
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEdL-----P~~w~~i~~ 41 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAEDL-----PTNWEEIPE 41 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-----TTTGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chhHHHHHH
Confidence 446677778888999999999999999665 778988764
No 43
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=21.19 E-value=2.2e+02 Score=26.68 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHH-------HHHHHhhHHHHHHHHHhccCCC
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFL-------DNFALLSGQFSAIAKVLSHDKT 68 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvL-------D~FAlLSgql~~L~k~L~~ek~ 68 (259)
++|+..+.-|-.++.++++.|+++-.....++.. --.-| +++.-|+.....|.++|++.+.
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~--L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~ 69 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGS--LKEQLKQLSEANGEIQQLSQEASNLTSALKNSKT 69 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCc
Confidence 4555555555555555555555443332211111 11123 4556777788888888886553
No 44
>PRK00846 hypothetical protein; Provisional
Probab=21.09 E-value=3.4e+02 Score=21.21 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy18165 114 EPDVEHKLIQLEHKAA--SLSYDAAQKQAATFNKVITHVLDIVSKAREEWE 162 (259)
Q Consensus 114 dPevE~~e~~L~~~aa--~~~~e~aqKQI~~~Nk~v~~ll~~l~~~re~we 162 (259)
|=++|++...|+.+.+ .-+.|..++.|...++.|+.+-..+...++...
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888765 335566666666667777776666665555554
No 45
>PF00600 Flu_NS1: Influenza non-structural protein (NS1); InterPro: IPR000256 NS1 is a homodimeric RNA-binding protein found in influenza virus that is required for viral replication. NS1 binds polyA tails of mRNA keeping them in the nucleus. NS1 inhibits pre-mRNA splicing by tightly binding to a specific stem-bulge of U6 snRNA [].; GO: 0003723 RNA binding; PDB: 2Z0A_C 3P39_E 3P38_C 3P31_C 3M8A_H 3M5R_D 3EE9_B 3KWI_A 3KWG_B 2RHK_A ....
Probab=20.79 E-value=69 Score=29.24 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhh
Q psy18165 19 LNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLS 53 (259)
Q Consensus 19 v~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLS 53 (259)
-+|+|++|+-||.-||+...++.=-..|..||-=+
T Consensus 171 ~EDVKnAigvligGlEWNdNtvrvse~lQRfawr~ 205 (217)
T PF00600_consen 171 NEDVKNAIGVLIGGLEWNDNTVRVSENLQRFAWRS 205 (217)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEE-HHHHHHTHHC
T ss_pred chhHHHhhhhcccceeecCCeEehhhhhHHHhhcc
Confidence 36999999999999999988888777888887543
No 46
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=20.27 E-value=4.2e+02 Score=24.62 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------hhh---ccC---CCCCchHHHHHHHHhhHHHHHHHHHhccC
Q psy18165 7 QLESSLESVVMKLNEIKSQLVGMLF--------------KID---HDR---DSLNWPTFLDNFALLSGQFSAIAKVLSHD 66 (259)
Q Consensus 7 qLe~aL~ai~~Rv~dlK~sI~~li~--------------kLE---~e~---e~l~WPsvLD~FAlLSgql~~L~k~L~~e 66 (259)
-||.+||.+.+++..||++..+++. -|| +.. +.-.--+-|.+|+.+-..|+.+.+.|=
T Consensus 6 ~~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~L~-- 83 (215)
T cd07641 6 VLEEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKNLL-- 83 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4788899999999998887766542 222 111 122344789999999999999999763
Q ss_pred CCCCCcceeeecc
Q psy18165 67 KTPPIRNLTVLPL 79 (259)
Q Consensus 67 k~P~Lrn~vvlPl 79 (259)
..+.|.|..|+
T Consensus 84 --~~~~~~v~~~L 94 (215)
T cd07641 84 --QGLSHNVIFTL 94 (215)
T ss_pred --HHHHHHHHHHH
Confidence 44555555554
No 47
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=20.20 E-value=5.7e+02 Score=22.14 Aligned_cols=98 Identities=13% Similarity=0.202 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccCCCchHHH
Q psy18165 10 SSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEEL 89 (259)
Q Consensus 10 ~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~LsperDe~L 89 (259)
..+.++..|-.+++..+..+-.. -++++|--+=.+-+-..|=+..+.|..++=+.|+.
T Consensus 25 ~~~~afk~r~d~~~~~v~~~pe~----pp~IDwa~Yk~~l~~~~~lVD~feK~y~s~kip~p------------------ 82 (161)
T PF05873_consen 25 AQFQAFKKRSDEYKRRVSKLPEQ----PPKIDWAHYKSVLKENPGLVDEFEKQYESFKIPYP------------------ 82 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-SS---------HHHHHHC-S-STTHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCcCC----CCCCCHHHHHHHhhhhHHHHHHHHHHHhccCCCCC------------------
Confidence 56888899998888887765543 37999976633333234556666665554333321
Q ss_pred HhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy18165 90 LRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHV 150 (259)
Q Consensus 90 ~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~l 150 (259)
-.+...++++.+++...++.. ....+++.|..|.+.+..+
T Consensus 83 --------------------~d~~~~~i~~~e~~~~~~~~~-~~~~s~~~i~~l~keL~~i 122 (161)
T PF05873_consen 83 --------------------VDKQTKEIDAQEKEAIKEAKE-FEAESKKRIAELEKELANI 122 (161)
T ss_dssp ----------------------TTTTHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 156678888888887665543 2344566666666655444
No 48
>PF12539 Csm1: Chromosome segregation protein Csm1/Pcs1; InterPro: IPR020981 Saccharomyces cerevisiae Csm1 is part of the monopolin complex. Csm1 forms a complex with Mde4 and promotes monoorientation during meiosis []. It plays a mitotic role in DNA replication [] and is required for condensin recruitment to the replication fork barrier site and rDNA repeat segregation []. This entry also contains the Schizosaccharomyces pombe homologue to Csm1, Pcs1. Pcs1 forms a complex with Mde4 and acts in the central kinetochore domain to clamp microtubule binding sites together[]. The two complexes (Csm1/Lrs4 and Pcs1/Mde4) contribute to the prevention of merotelic attachment [].; GO: 0005515 protein binding; PDB: 3N4S_C 3N4R_B 3N7N_A 3N4X_B.
Probab=20.17 E-value=58 Score=26.14 Aligned_cols=28 Identities=39% Similarity=0.771 Sum_probs=16.6
Q ss_pred eeeeccccCCCchHHHHhhhcCCcccCCCCcccccccC
Q psy18165 74 LTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRT 111 (259)
Q Consensus 74 ~vvlPl~LsperDe~L~~~TEgRV~~f~HdvVPDyLRT 111 (259)
.+-+|+ |.+.+|+++..+. +++||||+-
T Consensus 55 ~~Y~P~-l~~~~d~~~~~L~---------~~LPdYL~d 82 (90)
T PF12539_consen 55 FTYVPL-LDENRDRNLKELI---------KILPDYLCD 82 (90)
T ss_dssp EEEEEE--SSS-HHHHHHHH---------HHS-GGGGS
T ss_pred EEEEec-cCcccchhHHHHH---------HHCcHhhEE
Confidence 444564 5678899555554 589999973
Done!