Query psy18165
Match_columns 259
No_of_seqs 61 out of 63
Neff 3.9
Searched_HMMs 29240
Date Sat Aug 17 00:18:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h63_H Mediator of RNA polymer 99.9 7.7E-25 2.6E-29 192.0 5.7 173 3-191 5-199 (200)
2 4gwp_C Mediator of RNA polymer 99.5 3.7E-14 1.3E-18 134.5 7.3 98 11-124 32-129 (407)
3 3aai_A Copper homeostasis oper 73.1 11 0.00036 29.1 6.7 51 12-64 13-63 (94)
4 4adz_A CSOR; transcription, co 68.3 15 0.00052 30.4 7.0 49 12-63 51-99 (136)
5 2hh7_A Hypothetical protein CS 68.0 16 0.00056 29.4 7.0 50 12-64 9-58 (119)
6 3gn4_A Myosin-VI; unconvention 60.8 14 0.00047 31.0 5.4 55 8-64 91-145 (148)
7 1ozj_A SMAD 3; MAD homology do 57.8 7.7 0.00026 32.4 3.4 35 3-38 26-60 (144)
8 3g9g_A Suppressor of yeast pro 39.9 1E+02 0.0034 27.9 8.1 44 40-91 122-165 (287)
9 2ld3_A Myosin VI; molecular mo 44.8 6.6 0.00022 30.1 0.0 52 13-66 31-82 (88)
10 3qsv_A SMAD4, mothers against 37.9 21 0.00073 29.3 3.0 35 3-37 23-57 (132)
11 4gif_A Polycystic kidney disea 37.0 43 0.0015 23.0 3.9 24 6-29 17-40 (45)
12 1env_A HIV-1 envelope protein 35.3 1.8E+02 0.0062 23.6 8.2 105 6-160 2-113 (123)
13 3rh3_A Uncharacterized DUF3829 30.8 2.1E+02 0.0073 26.0 8.6 50 132-193 214-263 (264)
14 3d6r_B NS1, NS1A, non-structur 30.7 22 0.00076 29.7 1.9 35 20-54 100-134 (158)
15 2cly_B ATP synthase D chain, m 29.1 2.4E+02 0.0083 23.2 8.5 97 10-150 25-121 (160)
16 1txp_A HnRNP C, heterogeneous 28.8 53 0.0018 20.5 2.9 23 13-35 2-24 (28)
17 3rvc_A NS1, NS1A, non-structur 26.6 30 0.001 28.7 2.0 34 20-53 94-127 (152)
18 1kd8_B GABH BLL, GCN4 acid bas 26.3 1.3E+02 0.0046 19.7 4.7 28 6-33 4-31 (36)
19 2l3l_A Tubulin-specific chaper 24.5 1.4E+02 0.0048 23.3 5.6 51 11-72 32-82 (111)
20 3rkg_A Magnesium transporter M 24.1 3.6E+02 0.012 23.9 8.8 51 7-61 131-181 (261)
21 3kmp_A SMAD1-MH1; protein-DNA 23.9 50 0.0017 26.7 2.9 34 3-36 17-50 (124)
22 3hrn_A Transient receptor pote 22.3 1.2E+02 0.0043 22.1 4.4 25 6-30 16-40 (64)
23 1deq_A Fibrinogen (alpha chain 22.1 5.2E+02 0.018 24.7 10.0 25 6-30 56-80 (390)
24 1p9i_A Cortexillin I/GCN4 hybr 21.1 1.3E+02 0.0045 18.8 3.7 27 7-33 3-29 (31)
25 2js5_A Uncharacterized protein 20.9 1.9E+02 0.0065 21.4 5.3 40 3-47 3-42 (71)
26 3te3_A Polycystic kidney disea 20.7 77 0.0026 21.1 2.8 21 14-34 11-31 (39)
27 2z5i_A TM, general control pro 20.7 1.9E+02 0.0066 19.7 5.0 29 134-162 8-36 (52)
28 3f5t_A NS1, nonstructural prot 20.5 41 0.0014 29.2 1.8 35 20-54 167-201 (215)
29 2zd7_A VPS75, vacuolar protein 20.1 51 0.0017 29.3 2.4 75 12-99 11-90 (264)
No 1
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=99.90 E-value=7.7e-25 Score=191.96 Aligned_cols=173 Identities=21% Similarity=0.280 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccC
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILN 82 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~Ls 82 (259)
..+++++ +||+|+.|+++|++||..|+++|+++++..+||++|++|++|++||++|++.|. +..|.||++||+|+.+.
T Consensus 5 ~~~~~~~-~LEs~R~Rl~qL~~Sl~~l~~~l~~~~~lp~W~sll~q~~vl~~qL~sl~~~L~-~~~~~l~~~~v~P~~~~ 82 (200)
T 4h63_H 5 STEKTVE-SLEAIRHRIAQIVQSLTHFLAILHQSESLSPWPTIHKNFNILLSQIHSLSNNLA-AHSHTLQTTSIYPSLEF 82 (200)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHTEEEEECTTS
T ss_pred cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcceeccCCCC
Confidence 4567788 599999999999999999999999999999999999999999999999999995 67899999999999999
Q ss_pred CCchHHHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHH-HHHhcC---------------CHHHHHHHHHHHHHH
Q psy18165 83 PEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLE-HKAASL---------------SYDAAQKQAATFNKV 146 (259)
Q Consensus 83 perDe~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~-~~aa~~---------------~~e~aqKQI~~~Nk~ 146 (259)
|++|++ .+++.+||||++||||.-...-. +.+..+ .......++......
T Consensus 83 P~~~~e--------------~~L~~LLR~K~~PeVe~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 148 (200)
T 4h63_H 83 PVKEQE--------------PLLTTLLRTKALPEVEEWEANTLQEYEASISSQPKKKEANDAYQKDQLWDQARIIFMEER 148 (200)
T ss_dssp CTTTCH--------------HHHHHHTCCCCCHHHHHHHHHHHHHHHHHC--------CTTHHHHHHHHHHHHHHHHHHG
T ss_pred CCcchh--------------hHHHHHhcCCCCchHHHHHHHHHHhcccccccccchhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 999876 45667999999999999876653 211111 122345566666666
Q ss_pred HHHHHHHHHHHHHhHHHhhccCCCCCCCCChHHHH------HHHHHHHhCC
Q psy18165 147 ITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTH------SLVAAVGMGR 191 (259)
Q Consensus 147 v~~ll~~l~~~re~we~e~~~~~~~~~T~s~~DT~------~LVaAV~~Gk 191 (259)
.++-|..+-..+|+|+.+..+......+.+.+++. .+....+.|+
T Consensus 149 ~~~~w~g~~t~eE~~~g~~~~~~~~~~~~~~e~~~~~~~~~~vl~f~~~G~ 199 (200)
T 4h63_H 149 ENYSWFDFVTRRQESEGEFVSQRQLEIDRATEEQNANQMLTDILSFMKSGK 199 (200)
T ss_dssp GGSCCC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HhhhhccchhHHHhhcCccccchhhhhhccccccCCCCCHHHHHHHHhcCC
Confidence 66777667777889998887776666666666653 4556666654
No 2
>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A
Probab=99.48 E-value=3.7e-14 Score=134.50 Aligned_cols=98 Identities=21% Similarity=0.345 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccCCCchHHHH
Q psy18165 11 SLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELL 90 (259)
Q Consensus 11 aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~LsperDe~L~ 90 (259)
+||+|+.|+.+|++||..|+..|.. ++-.+||+++++|++|++||.+|.+.|. +..+.|+++||+|+...|.++.+-
T Consensus 32 aLEslR~RL~QLt~SL~sL~~~L~~-spLP~W~SLqsQfnILlsQL~SLs~~L~-~n~~lL~~~vVyP~p~FP~rtqE~- 108 (407)
T 4gwp_C 32 ALDAVRMRLAQLTHSLRRIRDEMSK-AELPQWYTLQSQLNVTLSQLVSVTSTLQ-HFQETLDSTVVYPLPKFPTTSHES- 108 (407)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHHH-HHTHHHHHHHCCCCCCCGGGTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHHHHHHHHHH-hcchHhhhceeccCCCCCCcchhh-
Confidence 6999999999999999999999975 4999999999999999999999999994 567899999999999999997643
Q ss_pred hhhcCCcccCCCCcccccccCCCCchHHHHHHHH
Q psy18165 91 RLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQL 124 (259)
Q Consensus 91 ~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L 124 (259)
++.-+||||++||||+-...-
T Consensus 109 -------------LLttLLRKKl~PEVEeWi~~g 129 (407)
T 4gwp_C 109 -------------LVTTLLRKKNIPEVDEWMKYV 129 (407)
T ss_dssp -------------THHHHHTCCCCCTTHHHHHHH
T ss_pred -------------HHHHHhccCCCchHHHHHHHH
Confidence 455599999999999877654
No 3
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=73.07 E-value=11 Score=29.07 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhc
Q psy18165 12 LESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLS 64 (259)
Q Consensus 12 L~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~ 64 (259)
-..+++|++-++..|.++..++|.+ +..-.+||-.++-+.|.|+.+...+=
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~--~~~C~dIl~QlaAvr~Al~~~~~~il 63 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDE--KVYCVDVLKQLKAVEGALDRVGEMVL 63 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS--EECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999844 44669999999999999999887553
No 4
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=68.26 E-value=15 Score=30.41 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHh
Q psy18165 12 LESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVL 63 (259)
Q Consensus 12 L~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L 63 (259)
-+.+++|++-++..|.+++.++|.+ -.-.+||-.++-+.+.|+.+...|
T Consensus 51 Kk~ll~RLkRIeGQvrGI~rMIEed---r~C~DIL~QlaAVrsAL~~v~~~I 99 (136)
T 4adz_A 51 KAEHLKRLRRIEGQIRGLQRMVDED---VYCIDILTQVSASTKALQSFALQL 99 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999844 457899999999999999988844
No 5
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=68.01 E-value=16 Score=29.45 Aligned_cols=50 Identities=10% Similarity=0.274 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhc
Q psy18165 12 LESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLS 64 (259)
Q Consensus 12 L~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~ 64 (259)
-..+++|++-++..|..++.++|.+ -.-.+||-.++-+.+.|+.+...|=
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEed---r~C~DIL~QlaAVrsAL~~~~~~IL 58 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESD---AYCVDVMKQISAVQSSLERANRVML 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999855 3569999999999999999887553
No 6
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=60.82 E-value=14 Score=31.04 Aligned_cols=55 Identities=9% Similarity=0.221 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhc
Q psy18165 8 LESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLS 64 (259)
Q Consensus 8 Le~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~ 64 (259)
|...-+.....+++++.+|++++.++- .+.++|..+-..|.-|-.+...+++.|+
T Consensus 91 Lk~~k~k~~~~v~~~~~~i~~~i~kIK--~~~i~~~~Id~~y~~lv~~~~~~l~~l~ 145 (148)
T 3gn4_A 91 LKDGKQEMSKQVKDLEISIDALMAKIK--STMMTREQIQKEYDALVKSSAVLLSALQ 145 (148)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445678899999999999999998 3689999999999999999999998776
No 7
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=57.83 E-value=7.7 Score=32.43 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRD 38 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e 38 (259)
.|||-.+.++++++.|+++ |+.|+.|+..+|....
T Consensus 26 ~~e~~~~kai~sLvKkLK~-~~~Le~L~~AV~s~g~ 60 (144)
T 1ozj_A 26 QEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQNV 60 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHHHHHhcc-cccHHHHHHHHhCCCC
Confidence 6889999999999999999 8899999999998743
No 8
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=39.94 E-value=1e+02 Score=27.87 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccCCCchHHHHh
Q psy18165 40 LNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLR 91 (259)
Q Consensus 40 l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~LsperDe~L~~ 91 (259)
-.|-.|+..---++++=..|...|+.|..-.|+++. ++|.++.+
T Consensus 122 ~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~--------e~~~~~~e 165 (287)
T 3g9g_A 122 NVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESV--------ENNTSWRE 165 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSS--------SSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HccHHHHH
Confidence 357777777777777777787777766655555554 88877766
No 9
>2ld3_A Myosin VI; molecular motor, lever arm extension, motor prote; NMR {Mus musculus}
Probab=44.75 E-value=6.6 Score=30.06 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccC
Q psy18165 13 ESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHD 66 (259)
Q Consensus 13 ~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~e 66 (259)
+.+...|++++.+|+++|.|+-.. + +++-.+-..|.-|--++..+++.|++.
T Consensus 31 ~~~~kqV~~l~~~Ie~~I~kIK~~-~-itr~~Id~~y~~L~~~~~~~l~~L~~k 82 (88)
T 2ld3_A 31 PEVNRQIKNLEISIDALMAKIKST-M-MTREQIQKEYDALVKSSEDLLSALQKK 82 (88)
Confidence 355688999999999999999765 3 999999999999999888888877753
No 10
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=37.90 E-value=21 Score=29.31 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDR 37 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~ 37 (259)
.|||-++.++++++.|+++=+..|+.|+..+|...
T Consensus 23 e~ek~~~ka~~sLvKkLK~k~~~Le~L~~Av~s~g 57 (132)
T 3qsv_A 23 ESETFAKRAIESLVKKLKEKKDELDSLITAITTNG 57 (132)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHhcccchHHHHHHHHhCCC
Confidence 46888899999999988776668999998888763
No 11
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=37.05 E-value=43 Score=22.97 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGM 29 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~l 29 (259)
-|||.+|+.|.+|++.+-..|+.+
T Consensus 17 lqlE~~l~gI~S~idav~~Kl~~~ 40 (45)
T 4gif_A 17 LQLETVLEGVVSQIDAVGSKLKML 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777554444433
No 12
>1env_A HIV-1 envelope protein chimera consisting of A FR GCN4 zipper cloned N-terminal TO...; viral fusion, coat protein, viral protein; 2.60A {Saccharomyces cerevisiae} SCOP: h.3.2.1 PDB: 1fav_A*
Probab=35.26 E-value=1.8e+02 Score=23.61 Aligned_cols=105 Identities=23% Similarity=0.418 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccCCCc
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPER 85 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~Lsper 85 (259)
||+|.-++.|++++.++.+++..-+ .| +|-+. .|+||-...=+.+|+- -|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~aas~-tL----------TVQ~r-~llsGivqQQ~nLLra-----------------IeA 52 (123)
T 1env_A 2 KQIEDKIEEILSKIYHIENEIARIK-KL----------IGEAR-QLLSGIVQQQNNLLRA-----------------IEA 52 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH-HH----------HHHHH-HHHHHHHHHHHHHHHH-----------------HHH
T ss_pred chHHHHHHHHHHHHHHhhhhhhHHh-he----------ehhHH-HHHHHHHHHHHHHHHH-----------------HHH
Confidence 6778888889999999999988765 33 23222 3667744433333331 112
Q ss_pred hHHHHhhh-------cCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18165 86 EEELLRLT-------EGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAR 158 (259)
Q Consensus 86 De~L~~~T-------EgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~~l~~~r 158 (259)
-.+|.++| +.||.+ |.-||+.- .++++-.-.|+|..|-..|-.+++.-.+..
T Consensus 53 QQhLLqLTVWGIKqLqARvlA-----vEryLkDQ----------------~NmTW~qWdreI~nyt~~Iy~LLeeSQ~QQ 111 (123)
T 1env_A 53 QQHLLQLTVWGIKQLQARILA-----VERYLKDQ----------------NNMTWMEWDREINNYTSLIHSLIEESQNQQ 111 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchhhhhh-----hhhcccCC----------------CCCCHHHHHHHHHHhhHHHHHHHHHHHhHH
Confidence 24455555 667755 35666532 677777777999999999999988765554
Q ss_pred Hh
Q psy18165 159 EE 160 (259)
Q Consensus 159 e~ 160 (259)
|.
T Consensus 112 EK 113 (123)
T 1env_A 112 EK 113 (123)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=30.77 E-value=2.1e+02 Score=25.97 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCChHHHHHHHHHHHhCCCC
Q psy18165 132 SYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGL 193 (259)
Q Consensus 132 ~~e~aqKQI~~~Nk~v~~ll~~l~~~re~we~e~~~~~~~~~T~s~~DT~~LVaAV~~GkGL 193 (259)
+.+...+--..|||.+..-+..+.++|+ +-.+|.+|-+.|..++-+|-++
T Consensus 214 ~~~~e~~~y~~flk~~e~f~~~lrk~k~------------~g~yS~~dy~~l~s~Y~~~~~~ 263 (264)
T 3rh3_A 214 GYDEELKNFQSFLSTVKSFMNDMQKARS------------KGAYSDKEYQAMSEAYEYGLSV 263 (264)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHT------------TSSCCHHHHHHHHHHHTTTTCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCCCHHHHHHHHHHHhccccc
Confidence 4466788889999999999999987654 2369999999999999988765
No 14
>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} PDB: 3oa9_A
Probab=30.67 E-value=22 Score=29.73 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhH
Q psy18165 20 NEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSG 54 (259)
Q Consensus 20 ~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSg 54 (259)
+|+|++|+-||.-||+...++.=..-|..||-=|.
T Consensus 100 EdVKnAigvlIgGleWN~Ntvrvse~lqRfawrs~ 134 (158)
T 3d6r_B 100 EDVKNAIGILIGGLEWNDNSIRASENIQRFAWGIR 134 (158)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECHHHHHHC----
T ss_pred HHHHhhHhheecceeEcCceeehhHHHHHHhhhcc
Confidence 69999999999999999888888888888886554
No 15
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=29.05 E-value=2.4e+02 Score=23.23 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccCCCchHHH
Q psy18165 10 SSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEEL 89 (259)
Q Consensus 10 ~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~LsperDe~L 89 (259)
..+.++.+|-++++..+..|-. +-++++|.-+=.+.+- .|=...+.|...+=+.|.
T Consensus 25 a~~~afK~~~d~~~~~v~~lpe----~pp~IDwa~Yk~~l~~-~~lVD~fek~y~s~kvp~------------------- 80 (160)
T 2cly_B 25 AVANSLKSWNETLTSRLATLPE----KPPAIDWAYYKANVAK-AGLVDDFEKKFNALKVPI------------------- 80 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS----SCCCCCHHHHHHTCSS-TTHHHHHHHHHTTCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc----CCCCCCHHHHHHhCCc-hHHHHHHHHHHhccCCCC-------------------
Confidence 4588899999998888887543 3489999866443332 455556666554433222
Q ss_pred HhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy18165 90 LRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHV 150 (259)
Q Consensus 90 ~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~l 150 (259)
+. .|..++++.+++++..++.. ....+.+.|..|.+-+.++
T Consensus 81 ------------------~~-d~~~~~i~a~e~~~~~~a~~-~~~~s~~ri~~lekeL~~i 121 (160)
T 2cly_B 81 ------------------PE-DKYTAQVDAEEKEDVKSCAE-FLTQSKTRIQEYEKELEKM 121 (160)
T ss_dssp ------------------CC-CCCTTHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ------------------Cc-chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 21 23567899999888776654 3345666777666654443
No 16
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=28.79 E-value=53 Score=20.52 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy18165 13 ESVVMKLNEIKSQLVGMLFKIDH 35 (259)
Q Consensus 13 ~ai~~Rv~dlK~sI~~li~kLE~ 35 (259)
.+|-.-+..+|..+.+|+..||.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788888888888888874
No 17
>3rvc_A NS1, NS1A, non-structural protein 1; interferon antagonist, protein binding; 1.80A {Influenza a virus} PDB: 3o9q_A 3o9r_A 3l4q_A 3o9t_A* 3o9s_A* 3o9u_B 2gx9_A 3p38_A 3p39_A 3p31_A 2kkz_A 2rhk_A 3kwg_A 3kwi_A 3m5r_A 3ee9_A 3ee8_A
Probab=26.58 E-value=30 Score=28.75 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhh
Q psy18165 20 NEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLS 53 (259)
Q Consensus 20 ~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLS 53 (259)
+|+|++|+-+|.-||+...++-=-.-|..||-=+
T Consensus 94 edvknaigvligglewn~ntvrvse~lqrfaw~~ 127 (152)
T 3rvc_A 94 EDVKNAVGVLIGGLEANDNTVRVSETLQRFAWRS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECHHHHHHTC--
T ss_pred HHHHHhHhheecceeecCceeeHHHHHHHHHhcc
Confidence 6999999999999999988877777777777544
No 18
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.28 E-value=1.3e+02 Score=19.68 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGMLFKI 33 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~li~kL 33 (259)
+|||.-++-++.+-.+|++.+..|-..|
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 6888888999999999988888876555
No 19
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=24.54 E-value=1.4e+02 Score=23.31 Aligned_cols=51 Identities=8% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCc
Q psy18165 11 SLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIR 72 (259)
Q Consensus 11 aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lr 72 (259)
+.+.......+-+.+|+++|..++ .-+.|.-|+..+..|++.|. |...+|-
T Consensus 32 ~~~~F~~~F~~~~~~Ie~~l~~~~----------~~~~ld~i~~~I~~Lqk~v~-das~fLp 82 (111)
T 2l3l_A 32 NSHFFVATFARERAAVEELLERAE----------SVERLEEAASRLQGLQKLIN-DSVFFLA 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------SHHHHHHHHHHHHHHHHHHH-HSTTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCc----------hhhHHHHHHHHHHHHHHHHH-HHhhhcc
Confidence 577778888888889999887553 56678999999999999987 4444443
No 20
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=24.11 E-value=3.6e+02 Score=23.95 Aligned_cols=51 Identities=6% Similarity=0.118 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHH
Q psy18165 7 QLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61 (259)
Q Consensus 7 qLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k 61 (259)
-|+.+...+-+++..+.......+..|+..-.+ +-|...-..+..|+.+..
T Consensus 131 ~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~----~~L~~Ll~~~k~L~~~~~ 181 (261)
T 3rkg_A 131 IFINVMSALETDFKLHSQICIQILNDLENEVNR----LKLRHLLIKSKDLTLFYQ 181 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHhHHHHHHHH
Confidence 344455556677788888899999999866443 455554455555555544
No 21
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=23.85 E-value=50 Score=26.72 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHD 36 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e 36 (259)
.|||=.+.++.+|+.|+++-+..|+.|+..++++
T Consensus 17 ~~~~~~~kav~sL~KklK~~~~~Le~L~~Av~~~ 50 (124)
T 3kmp_A 17 EEEKWAEKAVDALVKKLKKKKGAMEELEKALSCP 50 (124)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHCT
T ss_pred chhhHHHHHHHHHHHHHHhccchHHHHHHHHhCC
Confidence 5677778888888888776557788888777765
No 22
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=22.31 E-value=1.2e+02 Score=22.09 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGML 30 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~li 30 (259)
-|||.+|+.|.++++.+-..|+.+-
T Consensus 16 lqLE~sl~gI~SqIDaV~~KL~~~E 40 (64)
T 3hrn_A 16 DRMEHSIGSIVSKIDAVIVKLEIME 40 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777765544444443
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.07 E-value=5.2e+02 Score=24.67 Aligned_cols=25 Identities=8% Similarity=0.246 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGML 30 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~li 30 (259)
+-|+..-.-|..|+++||+.|..|.
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQ 80 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3444444556666666666666554
No 24
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.13 E-value=1.3e+02 Score=18.77 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18165 7 QLESSLESVVMKLNEIKSQLVGMLFKI 33 (259)
Q Consensus 7 qLe~aL~ai~~Rv~dlK~sI~~li~kL 33 (259)
||.+.|.++...-+.||..+++++.|.
T Consensus 3 qlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777777788888888888775
No 25
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=20.91 E-value=1.9e+02 Score=21.42 Aligned_cols=40 Identities=13% Similarity=0.348 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHH
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLD 47 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD 47 (259)
.+-+.|..-+--+-+|+.+.|-.|++|.--| ..+|..+++
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdL-----P~~w~~i~~ 42 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDL-----PTGWNRIME 42 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHST-----TTSGGGHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccc-----hhhHHHHHH
Confidence 4557788888899999999999999999655 778988765
No 26
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=20.68 E-value=77 Score=21.07 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy18165 14 SVVMKLNEIKSQLVGMLFKID 34 (259)
Q Consensus 14 ai~~Rv~dlK~sI~~li~kLE 34 (259)
.+..||..|.++|+++..++|
T Consensus 11 ~L~rRVlqlE~~l~gI~S~id 31 (39)
T 3te3_A 11 MLTRRVLQLETVLEGVVSQID 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555
No 27
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.66 E-value=1.9e+02 Score=19.74 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy18165 134 DAAQKQAATFNKVITHVLDIVSKAREEWE 162 (259)
Q Consensus 134 e~aqKQI~~~Nk~v~~ll~~l~~~re~we 162 (259)
|-|.+.++-|.|-||.|-+.+...|+...
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 67889999999999999998887776654
No 28
>3f5t_A NS1, nonstructural protein 1; H5N1, HOST-virus interaction, interferon ANT system evasion, nucleus, RNA-binding; 2.70A {Influenza virus}
Probab=20.51 E-value=41 Score=29.21 Aligned_cols=35 Identities=9% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhH
Q psy18165 20 NEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSG 54 (259)
Q Consensus 20 ~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSg 54 (259)
+|+|++|+-+|.-||+...++.=-.-|..||-=|.
T Consensus 167 edvknaigvligglewndntvrvse~lqrfawrs~ 201 (215)
T 3f5t_A 167 EDVKNAIGVLIGGLEWNDNTVRVTETIQRFAWRNS 201 (215)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECHHHHHHC----
T ss_pred HHHHHhHHheecceeecCceeehhHHHHHHhhccc
Confidence 68999999999999999888877788888876543
No 29
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=20.12 E-value=51 Score=29.33 Aligned_cols=75 Identities=7% Similarity=0.031 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhH----HHHHHHHHhccCCCCCCcceeeeccccCCCchH
Q psy18165 12 LESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSG----QFSAIAKVLSHDKTPPIRNLTVLPLILNPEREE 87 (259)
Q Consensus 12 L~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSg----ql~~L~k~L~~ek~P~Lrn~vvlPl~LsperDe 87 (259)
+..++..+.+|...+......||..|..+.-|-+--...+|+| .++ .|+|+..+--+++ +.|+
T Consensus 11 l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWlt------------al~n~~~l~~~I~-e~De 77 (264)
T 2zd7_A 11 HAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKI------------VLSQHVSFANYIR-ASDF 77 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH------------HHHHSTTGGGGSC-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHH------------HHHcChHHHhhcC-HhhH
Confidence 5556777788999999999999888777777766666677764 233 3345555555664 5666
Q ss_pred HHH-hhhcCCccc
Q psy18165 88 ELL-RLTEGRVPA 99 (259)
Q Consensus 88 ~L~-~~TEgRV~~ 99 (259)
.++ -||.=||..
T Consensus 78 ~iL~~L~dI~v~~ 90 (264)
T 2zd7_A 78 KYIDTIDKIKVEW 90 (264)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHHhcCceEEEE
Confidence 544 344444443
Done!