Query psy18165
Match_columns 259
No_of_seqs 61 out of 63
Neff 3.9
Searched_HMMs 13730
Date Sat Aug 17 00:18:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/18165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gx9a1 d.299.1.1 (A:79-205) N 31.9 11 0.00078 28.8 2.1 31 20-50 94-124 (127)
2 d1tw9a1 a.45.1.1 (A:78-206) Cl 23.0 80 0.0058 21.2 5.5 61 11-71 10-71 (129)
3 d2p90a1 c.56.8.1 (A:6-274) Hyp 22.2 1.6E+02 0.011 23.3 8.1 45 104-148 195-245 (269)
4 d1ez3a_ a.47.2.1 (A:) Syntaxin 20.5 1.3E+02 0.0096 20.9 7.0 33 3-35 45-77 (124)
5 d1seta1 a.2.7.1 (A:1-110) Sery 19.7 68 0.005 22.3 4.6 19 12-30 80-98 (110)
6 d1m0ua1 a.45.1.1 (A:123-249) C 19.3 3.7 0.00027 29.0 -2.7 28 87-117 100-127 (127)
7 d1ozja_ d.164.1.1 (A:) SMAD MH 17.0 45 0.0033 25.3 3.1 33 3-36 20-52 (126)
8 d1wera_ a.116.1.2 (A:) p120GAP 16.7 70 0.0051 26.3 4.7 86 42-149 139-245 (324)
9 d1wlza1 a.39.1.7 (A:229-311) D 15.0 39 0.0028 21.9 2.1 27 24-50 56-83 (83)
10 d2rfra1 d.17.4.28 (A:1-153) Un 13.6 47 0.0034 23.4 2.4 40 6-50 5-44 (153)
No 1
>d2gx9a1 d.299.1.1 (A:79-205) Non-structural protein NS1 C-terminal domain {Influenza A virus [TaxId: 11320]}
Probab=31.90 E-value=11 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.298 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCchHHHHHHH
Q psy18165 20 NEIKSQLVGMLFKIDHDRDSLNWPTFLDNFA 50 (259)
Q Consensus 20 ~dlK~sI~~li~kLE~e~e~l~WPsvLD~FA 50 (259)
+|+|++|+-||.-||+...++.=-.-|..||
T Consensus 94 EDvknaigvligglewndntvrvse~lqRfa 124 (127)
T d2gx9a1 94 EDVKNAVGVLIGGLEWNDNTVRVSETLQRFA 124 (127)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECHHHHHHT
T ss_pred HHHHHHHHHhccceeecCceeeHHHHHHHHh
Confidence 6999999999999999977776666676665
No 2
>d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}
Probab=23.04 E-value=80 Score=21.17 Aligned_cols=61 Identities=8% Similarity=0.084 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCC
Q psy18165 11 SLESVVMKLNEIKSQLVGMLFKIDH-DRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPI 71 (259)
Q Consensus 11 aL~ai~~Rv~dlK~sI~~li~kLE~-e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~L 71 (259)
-+|+++..++|+...+..+++.-.. ..+.....-.-+-...+...+..|.++|.+...+++
T Consensus 10 ~vd~~~d~~~D~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~le~~L~~~~~~~~ 71 (129)
T d1tw9a1 10 LIDSLADAYTDYRAEMKTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKKNSSGFL 71 (129)
T ss_dssp HHHHHHHHHHHHHHHC---------------CHHHHHTHHHHHHHHHHHHHHHHHHCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 4577888888999888876653221 112222222222334467788888888887655543
No 3
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=22.24 E-value=1.6e+02 Score=23.31 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=29.3
Q ss_pred cccccccCCCCchHHHHHHHHHHHHhcC--CHHH----HHHHHHHHHHHHH
Q psy18165 104 LVPDYLRTKQEPDVEHKLIQLEHKAASL--SYDA----AQKQAATFNKVIT 148 (259)
Q Consensus 104 vVPDyLRTKpdPevE~~e~~L~~~aa~~--~~e~----aqKQI~~~Nk~v~ 148 (259)
.||.|+..-|||..-...-+.-.+.-++ +.+. |.+.-.+++++++
T Consensus 195 ~vp~y~~~~pdP~AA~~lL~~l~~~~gl~id~~~L~e~Ae~~e~~i~~l~e 245 (269)
T d2p90a1 195 HVPHYVSASPYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTE 245 (269)
T ss_dssp EEEGGGTTSCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EcCccccCCCCHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999888777666665544 3333 4444444444444
No 4
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.49 E-value=1.3e+02 Score=20.94 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDH 35 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~ 35 (259)
.-.++|+..++.+..+++.+|..|..|-.-++.
T Consensus 45 ~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~ 77 (124)
T d1ez3a_ 45 KTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 77 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999766553
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=19.71 E-value=68 Score=22.34 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy18165 12 LESVVMKLNEIKSQLVGML 30 (259)
Q Consensus 12 L~ai~~Rv~dlK~sI~~li 30 (259)
+..+-..+.++...+..++
T Consensus 80 i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 80 AKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444443
No 6
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=19.35 E-value=3.7 Score=29.02 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=20.6
Q ss_pred HHHHhhhcCCcccCCCCcccccccCCCCchH
Q psy18165 87 EELLRLTEGRVPAFTHDLVPDYLRTKQEPDV 117 (259)
Q Consensus 87 e~L~~~TEgRV~~f~HdvVPDyLRTKpdPev 117 (259)
++|.+.-+ || .+|.-|=.||+++|+++|
T Consensus 100 P~L~~~~~-rv--~~~P~ik~yl~~Rp~~~~ 127 (127)
T d1m0ua1 100 PALRGVVD-AV--NALEPIKAWIEKRPVTEV 127 (127)
T ss_dssp HHHHHHHH-HH--HTSHHHHHHHHHSCCCCC
T ss_pred hHHHHHHH-HH--HcCHHHHHHHHHCCCCCC
Confidence 55665554 54 478888889999999875
No 7
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.97 E-value=45 Score=25.29 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy18165 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHD 36 (259)
Q Consensus 3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e 36 (259)
.|||-.+.++++++.|+++ |+.|+.|+.-++..
T Consensus 20 eee~~~~kAi~sLvKkLKk-~~~le~L~~Av~s~ 52 (126)
T d1ozja_ 20 QEEKWCEKAVKSLVKKLKK-TGQLDELEKAITTQ 52 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhc-cchHHHHHHHHHCC
Confidence 4677777777777777764 33566666555544
No 8
>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.68 E-value=70 Score=26.28 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=48.3
Q ss_pred chHHHHHHHHhhHHHHHHHHHhcc---CCCC--------------CCcceeeeccccCCCchHHHHhhhcCCcccCCCCc
Q psy18165 42 WPTFLDNFALLSGQFSAIAKVLSH---DKTP--------------PIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDL 104 (259)
Q Consensus 42 WPsvLD~FAlLSgql~~L~k~L~~---ek~P--------------~Lrn~vvlPl~LsperDe~L~~~TEgRV~~f~Hdv 104 (259)
|-.+.++...+.-++..+.+.++. ++.| +||- +.|.+++|+ .+.+
T Consensus 139 ~~~I~~s~~~~P~~lr~i~~~i~~~~~~~fp~~~~~~~~~v~~fiflRf--i~PAI~~P~----------------~~gl 200 (324)
T d1wera_ 139 VEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVSGFVFLRL--ICPAILNPR----------------MFNI 200 (324)
T ss_dssp HHHHHTTGGGSCHHHHHHHHHHHHHHHHHSTTCSSHHHHHHHHHHTTTT--HHHHHHCGG----------------GGTS
T ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH--HHHHhcCHH----------------HhCC
Confidence 445555555566666555555542 1222 5553 679999998 4677
Q ss_pred ccccccCCCCchHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHHHHH
Q psy18165 105 VPDYLRTKQEPDVEHKLIQLE----HKAASLSYDAAQKQAATFNKVITH 149 (259)
Q Consensus 105 VPDyLRTKpdPevE~~e~~L~----~~aa~~~~e~aqKQI~~~Nk~v~~ 149 (259)
+++ .|+|++......+. .=|+...+..-..-..-+|..|..
T Consensus 201 ~~~----~~~~~~rr~L~liaKvlQ~lan~~~~~~ke~~m~~ln~fi~~ 245 (324)
T d1wera_ 201 ISD----SPSPIAARTLILVAKSVQNLANLVEFGAKEPYMEGVNPFIKS 245 (324)
T ss_dssp CSS----CCCHHHHHHHHHHHHHHHHHHTTCCCCTTSGGGGGGHHHHHH
T ss_pred CcC----CCCHHHHHHHHHHHHHHHHHhcCCCcccchhhhhhHHHHHHH
Confidence 775 57888877776663 334444333212234444554443
No 9
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.02 E-value=39 Score=21.94 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhccCC-CCCchHHHHHHH
Q psy18165 24 SQLVGMLFKIDHDRD-SLNWPTFLDNFA 50 (259)
Q Consensus 24 ~sI~~li~kLE~e~e-~l~WPsvLD~FA 50 (259)
..+..|+.+++...+ .++|.+||+.|+
T Consensus 56 ~e~~~l~~~~d~~~~g~I~y~eFl~~fs 83 (83)
T d1wlza1 56 EQFDRLWNEMPVNAKGRLKYPDFLSRFS 83 (83)
T ss_dssp HHHHHHHTTSCBCTTSCBCHHHHHHHHC
T ss_pred hHHHHHhhccccCCCCcEeHHHHHHHhC
Confidence 446677777765544 899999999885
No 10
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}
Probab=13.62 E-value=47 Score=23.38 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHH
Q psy18165 6 KQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFA 50 (259)
Q Consensus 6 KqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FA 50 (259)
.+|+.-|..|..| ..|.+|++..=.-.++-+|+.+.+-|+
T Consensus 5 ~~l~~rl~~led~-----~aI~~l~~~y~~~~D~~d~~~~~~lFt 44 (153)
T d2rfra1 5 TNLAARLRLLEDR-----EEIRELIARYGPLADSGDAEALSELWV 44 (153)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHTTEE
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCCCHHHHHhhcc
Confidence 3455555555444 345555555444446789998887764
Done!