Your job contains 1 sequence.
>psy18165
MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA
KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK
LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT
HSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKN
PSGIKTNIKAAAAIHPYSR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy18165
(259 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034503 - symbol:MED8 "Mediator complex subunit 8"... 520 6.1e-56 2
UNIPROTKB|F1NG55 - symbol:MED8 "Uncharacterized protein" ... 413 1.1e-44 2
UNIPROTKB|F1MMX8 - symbol:MED8 "Uncharacterized protein" ... 413 1.1e-44 2
UNIPROTKB|F1S313 - symbol:MED8 "Uncharacterized protein" ... 412 1.4e-44 2
MGI|MGI:1915269 - symbol:Med8 "mediator of RNA polymerase... 410 2.3e-44 2
UNIPROTKB|Q96G25 - symbol:MED8 "Mediator of RNA polymeras... 406 5.9e-44 2
RGD|1305552 - symbol:Med8 "mediator complex subunit 8" sp... 366 9.4e-40 2
ZFIN|ZDB-GENE-040426-2091 - symbol:med8 "mediator complex... 371 1.2e-39 2
UNIPROTKB|F1P8G9 - symbol:MED8 "Uncharacterized protein" ... 255 4.1e-28 2
WB|WBGene00007013 - symbol:mdt-8 species:6239 "Caenorhabd... 138 6.3e-08 1
>FB|FBgn0034503 [details] [associations]
symbol:MED8 "Mediator complex subunit 8" species:7227
"Drosophila melanogaster" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS;IMP] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0016592 "mediator complex" evidence=IEA;IC;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IC] InterPro:IPR019364
Pfam:PF10232 EMBL:AE013599 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 eggNOG:NOG330005 GeneTree:ENSGT00390000011838
KO:K15129 CTD:112950 EMBL:AY071108 RefSeq:NP_722456.1
UniGene:Dm.30998 ProteinModelPortal:A1ZBT5 IntAct:A1ZBT5
STRING:A1ZBT5 PaxDb:A1ZBT5 PRIDE:A1ZBT5 EnsemblMetazoa:FBtr0086297
GeneID:37305 KEGG:dme:Dmel_CG13867 FlyBase:FBgn0034503
InParanoid:A1ZBT5 OMA:NWPTFLD OrthoDB:EOG444J2C PhylomeDB:A1ZBT5
GenomeRNAi:37305 NextBio:803031 Bgee:A1ZBT5 Uniprot:A1ZBT5
Length = 252
Score = 520 (188.1 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 96/195 (49%), Positives = 139/195 (71%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQR+EK E +L++V+ +LN++K ++ M+ K++ + +++NWPTFLDNFA++S + +
Sbjct: 1 MQRDEKLFELTLDTVLQRLNDLKLAVLSMIQKLELEYETINWPTFLDNFAIISSHLTGLT 60
Query: 61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
K+L+ ++ PP+RN TV GRVP F+HD+VPDYLRT+ +P E K
Sbjct: 61 KILAKEQCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVFSHDIVPDYLRTRPDPITEQK 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
++Q E KAA+L+ DAA KQ +NKV++HVLD+VSKAREEWE E+ +R G QTSS+ DT
Sbjct: 121 MLQNEQKAANLTNDAAMKQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADT 180
Query: 181 HSLVAAVGMGRGLKM 195
LVAAVGMG+GLK+
Sbjct: 181 QLLVAAVGMGKGLKL 195
Score = 74 (31.1 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PS +KTNIK+A +HP+SR
Sbjct: 232 KAPSAVKTNIKSANQVHPFSR 252
>UNIPROTKB|F1NG55 [details] [associations]
symbol:MED8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR019364 Pfam:PF10232 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00390000011838 OMA:NWPTFLD
EMBL:AADN02012737 IPI:IPI00577187 Ensembl:ENSGALT00000016237
Uniprot:F1NG55
Length = 266
Score = 413 (150.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 85/191 (44%), Positives = 127/191 (66%)
Query: 3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKV 62
REEKQLE +LE+++ ++ ++K+ LV ++K++++ D L WP+ LD+FALLSGQ + + KV
Sbjct: 1 REEKQLELTLEALISQVADLKNSLVSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLNKV 60
Query: 63 LSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHKLI 122
L H+KTP +RN + GRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61 LKHEKTPLLRNQVIIPLVLSPDRDEEIMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEK 120
Query: 123 QLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHS 182
QL AA +S D AQKQ + NK+ +++L+ +SK EE ESE+G QT + TDT++
Sbjct: 121 QLITDAARISPDGAQKQIQSLNKMCSNLLEKISK--EERESESGGLRQNKQTFNPTDTNA 178
Query: 183 LVAAVGMGRGL 193
LVAAV G+GL
Sbjct: 179 LVAAVAFGKGL 189
Score = 74 (31.1 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PSGIKTNIK+A+ +HPY R
Sbjct: 247 KMPSGIKTNIKSAS-MHPYQR 266
>UNIPROTKB|F1MMX8 [details] [associations]
symbol:MED8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016592 "mediator complex" evidence=IEA] [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR019364 Pfam:PF10232 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00390000011838 OMA:NWPTFLD EMBL:DAAA02009047
IPI:IPI00904563 Ensembl:ENSBTAT00000022477 ArrayExpress:F1MMX8
Uniprot:F1MMX8
Length = 269
Score = 413 (150.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 85/193 (44%), Positives = 127/193 (65%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+SL++++ ++ ++K+ L ++K++++ D L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEASLDALLSQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL H+KTP RN + GRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
QL AA + DAAQKQ + NK+ +++L+ +SK EE ESE+G QT + DT
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPADT 178
Query: 181 HSLVAAVGMGRGL 193
++LVAAV G+GL
Sbjct: 179 NALVAAVAFGKGL 191
Score = 74 (31.1 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PSGIKTNIK+A+ +HPY R
Sbjct: 250 KMPSGIKTNIKSAS-MHPYQR 269
>UNIPROTKB|F1S313 [details] [associations]
symbol:MED8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016592 "mediator complex" evidence=IEA] [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR019364 Pfam:PF10232 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00390000011838 OMA:NWPTFLD EMBL:CU694684
Ensembl:ENSSSCT00000004362 Uniprot:F1S313
Length = 288
Score = 412 (150.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 85/193 (44%), Positives = 126/193 (65%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+SL++++ ++ ++K+ L ++K++++ D L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEASLDALLSQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL H+KTP RN + GRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
QL AA + DAAQKQ + NK+ +++L+ +SK EE ESE G QT + DT
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESEGGGLRPNKQTFNPADT 178
Query: 181 HSLVAAVGMGRGL 193
++LVAAV G+GL
Sbjct: 179 NALVAAVAFGKGL 191
Score = 74 (31.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PSGIKTNIK+A+ +HPY R
Sbjct: 249 KMPSGIKTNIKSAS-MHPYQR 268
>MGI|MGI:1915269 [details] [associations]
symbol:Med8 "mediator of RNA polymerase II transcription,
subunit 8 homolog (yeast)" species:10090 "Mus musculus" [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016592 "mediator complex" evidence=ISA;IDA] InterPro:IPR019364
Pfam:PF10232 UniPathway:UPA00143 MGI:MGI:1915269 GO:GO:0016567
Reactome:REACT_127416 Reactome:REACT_27166 GO:GO:0016592
GO:GO:0001104 eggNOG:NOG330005 GeneTree:ENSGT00390000011838
KO:K15129 CTD:112950 HOGENOM:HOG000231149 HOVERGEN:HBG009716
OrthoDB:EOG4CC427 OMA:NWPTFLD EMBL:AB041805 EMBL:AK008759
EMBL:AK147032 EMBL:AK148025 EMBL:BC002315 EMBL:BC021870
IPI:IPI00318505 RefSeq:NP_064384.2 UniGene:Mm.259567
ProteinModelPortal:Q9D7W5 STRING:Q9D7W5 PhosphoSite:Q9D7W5
PaxDb:Q9D7W5 PRIDE:Q9D7W5 Ensembl:ENSMUST00000019229 GeneID:80509
KEGG:mmu:80509 InParanoid:Q9D7W5 NextBio:350033 Bgee:Q9D7W5
Genevestigator:Q9D7W5 GermOnline:ENSMUSG00000006392 Uniprot:Q9D7W5
Length = 268
Score = 410 (149.4 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 85/193 (44%), Positives = 127/193 (65%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+SL++++ ++ ++K+ L ++K++++ D L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEASLDALLNQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL H+KTP RN + GRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
QL AA + DAAQKQ + NK+ +++L+ +SK EE ESE+G QT + DT
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPGDT 178
Query: 181 HSLVAAVGMGRGL 193
++LVAAV G+GL
Sbjct: 179 NALVAAVAFGKGL 191
Score = 74 (31.1 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PSGIKTNIK+A+ +HPY R
Sbjct: 249 KMPSGIKTNIKSAS-MHPYQR 268
>UNIPROTKB|Q96G25 [details] [associations]
symbol:MED8 "Mediator of RNA polymerase II transcription
subunit 8" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR019364 Pfam:PF10232 UniPathway:UPA00143
Reactome:REACT_111045 GO:GO:0016567 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 EMBL:AL139289 eggNOG:NOG330005 KO:K15129 CTD:112950
HOGENOM:HOG000231149 HOVERGEN:HBG009716 OrthoDB:EOG4CC427
OMA:NWPTFLD EMBL:AF521562 EMBL:BC010019 EMBL:BC010543 EMBL:BG722466
IPI:IPI00300278 IPI:IPI00418130 IPI:IPI00419516 RefSeq:NP_443109.2
RefSeq:NP_963836.2 UniGene:Hs.301756 ProteinModelPortal:Q96G25
IntAct:Q96G25 MINT:MINT-275810 STRING:Q96G25 PhosphoSite:Q96G25
DMDM:31076772 PaxDb:Q96G25 PRIDE:Q96G25 DNASU:112950
Ensembl:ENST00000290663 Ensembl:ENST00000372455
Ensembl:ENST00000372457 GeneID:112950 KEGG:hsa:112950
UCSC:uc001cje.1 UCSC:uc001cjf.4 GeneCards:GC01M043849
HGNC:HGNC:19971 HPA:HPA028377 HPA:HPA028438 MIM:607956
neXtProt:NX_Q96G25 PharmGKB:PA134893073 InParanoid:Q96G25
GenomeRNAi:112950 NextBio:78721 Bgee:Q96G25 CleanEx:HS_MED8
Genevestigator:Q96G25 GermOnline:ENSG00000159479 Uniprot:Q96G25
Length = 268
Score = 406 (148.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 85/193 (44%), Positives = 126/193 (65%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
MQREEKQLE+SL++++ ++ ++K+ L + K++++ L WP+ LD+FALLSGQ + +
Sbjct: 1 MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
KVL H+KTP RN + GRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
QL AA + DAAQKQ + NK+ +++L+ +SK EE ESE+G QT + TDT
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPTDT 178
Query: 181 HSLVAAVGMGRGL 193
++LVAAV G+GL
Sbjct: 179 NALVAAVAFGKGL 191
Score = 74 (31.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PSGIKTNIK+A+ +HPY R
Sbjct: 249 KMPSGIKTNIKSAS-MHPYQR 268
>RGD|1305552 [details] [associations]
symbol:Med8 "mediator complex subunit 8" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR019364 Pfam:PF10232 RGD:1305552
GO:GO:0016592 GO:GO:0001104 IPI:IPI00557795 PRIDE:D4A4B5
Ensembl:ENSRNOT00000047153 UCSC:RGD:1305552 ArrayExpress:D4A4B5
Uniprot:D4A4B5
Length = 234
Score = 366 (133.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 85/209 (40%), Positives = 127/209 (60%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSL----------------NWPT 44
MQREEKQLE+SL++++ ++ ++K+ L ++K++++ D L N P+
Sbjct: 1 MQREEKQLEASLDALLNQVADLKNSLGSFIYKLENEYDRLTCRKISCFYCSQSRANNGPS 60
Query: 45 FLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDL 104
LD+FALLSGQ + + KVL H+KTP RN + GRVP F+H++
Sbjct: 61 VLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEV 120
Query: 105 VPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESE 164
VPD+LRTK +P+VE + QL AA + DAAQKQ + NK+ +++L+ +SK EE ESE
Sbjct: 121 VPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESE 178
Query: 165 AGARGGTGQTSSLTDTHSLVAAVGMGRGL 193
+G QT + DT++LVAAV G+GL
Sbjct: 179 SGGLRPNKQTFNPADTNALVAAVAFGKGL 207
Score = 74 (31.1 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PSGIKTNIK+A+ +HPY R
Sbjct: 215 KMPSGIKTNIKSAS-MHPYQR 234
>ZFIN|ZDB-GENE-040426-2091 [details] [associations]
symbol:med8 "mediator complex subunit 8"
species:7955 "Danio rerio" [GO:0016592 "mediator complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR019364 Pfam:PF10232
UniPathway:UPA00143 ZFIN:ZDB-GENE-040426-2091 GO:GO:0016567
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG330005 KO:K15129
EMBL:BC066472 IPI:IPI00507296 RefSeq:NP_996966.1 UniGene:Dr.84281
STRING:Q6NYT1 PRIDE:Q6NYT1 GeneID:404615 KEGG:dre:404615 CTD:112950
HOGENOM:HOG000231149 HOVERGEN:HBG009716 OrthoDB:EOG4CC427
NextBio:20817681 Uniprot:Q6NYT1
Length = 267
Score = 371 (135.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 75/192 (39%), Positives = 119/192 (61%)
Query: 2 QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
QREEKQLE+ LES+V ++ +K L ++K++++ D L WP+ LDNFAL+SGQ + I K
Sbjct: 3 QREEKQLEAFLESLVARVAHLKGSLQSFIYKLENEYDRLTWPSVLDNFALISGQLNTINK 62
Query: 62 VLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHKL 121
+L ++KTP ++ + RVP F+H++VPD+LRTK +P+VE +
Sbjct: 63 LLRNEKTPSYKSQVIIPLLLSPDRDEELAKLTEHRVPVFSHEIVPDHLRTKPDPEVEEQE 122
Query: 122 IQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTH 181
L +AA + + AQKQ NK+ +++L+ ++ RE+ +SE A + + DT+
Sbjct: 123 KHLSAEAARIGPEVAQKQIQALNKLCSNLLEKLNNPREDRDSETSALRQNKPSFNPADTN 182
Query: 182 SLVAAVGMGRGL 193
+LVAAVG G+GL
Sbjct: 183 ALVAAVGFGKGL 194
Score = 68 (29.0 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PS IKTNIK+A+ +HPY+R
Sbjct: 248 KIPSNIKTNIKSAS-MHPYNR 267
>UNIPROTKB|F1P8G9 [details] [associations]
symbol:MED8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR019364 Pfam:PF10232 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00390000011838 EMBL:AAEX03009811
Ensembl:ENSCAFT00000008450 OMA:REISKEX Uniprot:F1P8G9
Length = 234
Score = 255 (94.8 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 47/111 (42%), Positives = 74/111 (66%)
Query: 1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
+QREEKQLE+SL++++ ++ ++K+ L ++K++++ D L WP+ LD+FALLSGQ + +
Sbjct: 73 VQREEKQLEASLDALLSQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 132
Query: 61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRT 111
KVL H+KTP RN + GRVP F+H++VPD+LRT
Sbjct: 133 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRT 183
Score = 74 (31.1 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
K PSGIKTNIK+A+ +HPY R
Sbjct: 215 KMPSGIKTNIKSAS-MHPYQR 234
>WB|WBGene00007013 [details] [associations]
symbol:mdt-8 species:6239 "Caenorhabditis elegans"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] InterPro:IPR019364
Pfam:PF10232 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 EMBL:AL110499 GO:GO:0016592 GO:GO:0001104 PIR:T31474
RefSeq:NP_496463.2 RefSeq:NP_496464.2 ProteinModelPortal:Q9U1W2
DIP:DIP-25584N IntAct:Q9U1W2 MINT:MINT-1103185 STRING:Q9U1W2
PaxDb:Q9U1W2 PRIDE:Q9U1W2 EnsemblMetazoa:Y62F5A.1b GeneID:174763
KEGG:cel:CELE_Y62F5A.1 UCSC:Y62F5A.1a CTD:174763 WormBase:Y62F5A.1a
WormBase:Y62F5A.1b eggNOG:NOG330005 GeneTree:ENSGT00390000011838
HOGENOM:HOG000113549 InParanoid:Q9U1W2 KO:K15129 OMA:PHGHEDY
NextBio:885398 Uniprot:Q9U1W2
Length = 297
Score = 138 (53.6 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 42/201 (20%), Positives = 93/201 (46%)
Query: 2 QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
Q E +++ + + ++ ++ + K + +L +D ++ WP L+ F+ L+ S++
Sbjct: 15 QGEPEKIAQATDMMIKRVTDAKKIIEELLQMLDL-QEKCPWPLMLEKFSTLASFMSSLQS 73
Query: 62 VLSHDKTPP--------IRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQ 113
+ P +R+ + GRV ++ H LVP+YLRTK
Sbjct: 74 SVRKSGMPHGHEDYGQFLRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALVPEYLRTKP 133
Query: 114 EPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQ 173
P++E++ L+ + ++ S D +Q A +NK I +++ ++ + +EA
Sbjct: 134 NPEMENEEGMLDGERSAKSADLVVRQIAAYNKNIEGLINHLNSV-DRMHTEAAIEK---P 189
Query: 174 TSSLTDTHSLVAAVGMGRGLK 194
T + +T +V ++ G G++
Sbjct: 190 TYNRDETAKIVKSILTGEGIR 210
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.129 0.362 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 259 199 0.00085 111 3 11 23 0.37 33
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 582 (62 KB)
Total size of DFA: 152 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.93u 0.11s 16.04t Elapsed: 00:00:02
Total cpu time: 15.93u 0.11s 16.04t Elapsed: 00:00:02
Start: Thu Aug 15 14:46:15 2013 End: Thu Aug 15 14:46:17 2013