RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18165
(259 letters)
>d1omha_ d.89.1.5 (A:) TrwC relaxase {Escherichia coli [TaxId: 562]}
Length = 293
Score = 29.1 bits (65), Expect = 0.51
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 86 EEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNK 145
+ L G + H ++ R + + L K+ SL A
Sbjct: 52 SKRFRELLAGNIGE-GHRIMRSATRQDSKERIGLDLTFSAPKSVSLQALVAGDAE----- 105
Query: 146 VITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAV 187
+I V++ E+ E+ A AR + + T +LV
Sbjct: 106 IIKAHDRAVARTLEQAEARAQARQKIQGKTRIETTGNLVIGK 147
>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre
{Thermochromatium tepidum [TaxId: 1050]}
Length = 201
Score = 27.5 bits (61), Expect = 1.5
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 197 MPGPGA---PVGPGMMVAPGG------PGRPVGPGPGMPMGPGGQPM 234
+P P P G +VAP P P PG P+ P G PM
Sbjct: 3 LPDPKTFVLPHNGGTVVAPRVEAPVAVNATPFSPAPGSPLVPNGDPM 49
>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 213
Score = 27.1 bits (60), Expect = 1.6
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 197 MPGPGA---PVGPGMMVAPGG-------PGRPVGPGPGMPMGPGGQPM 234
+P P P G G + PG G P P G PM
Sbjct: 23 LPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPM 70
>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating
monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 154
Score = 26.5 bits (58), Expect = 2.4
Identities = 7/49 (14%), Positives = 10/49 (20%), Gaps = 9/49 (18%)
Query: 198 PGPGAPVGPGMMV---------APGGPGRPVGPGPGMPMGPGGQPMGMM 237
G G A P + G G +G +
Sbjct: 76 TGSYWFCDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFV 124
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 241
Score = 26.7 bits (59), Expect = 2.8
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 10/74 (13%)
Query: 17 MKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTV 76
+KL + + V ++ +D D W F +V + + +
Sbjct: 82 VKLGLLNVEEVYVVRDVDEGNDVFEWVL----------SFLREREVRVDNGAIVTEGVKI 131
Query: 77 LPLILNPEREEELL 90
P + E
Sbjct: 132 YPYGMGNLTLNEPF 145
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 25.7 bits (56), Expect = 4.6
Identities = 6/45 (13%), Positives = 9/45 (20%)
Query: 199 GPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKNPSG 243
GP P G P + + P+
Sbjct: 1 GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAV 45
>d2i5nh1 b.41.1.1 (H:37-258) Photosynthetic reaction centre
{Rhodopseudomonas viridis [TaxId: 1079]}
Length = 222
Score = 25.9 bits (57), Expect = 5.0
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 217 RPVGPGPGMPMGPGGQPM 234
G P+ P G P+
Sbjct: 55 AQTDGFEGAPLQPTGNPL 72
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 25.4 bits (55), Expect = 7.7
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 14 SVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRN 73
S K+ +I ++ + ++ I+ R+ L L+ L++ ++ ++S K PP
Sbjct: 39 SSCCKMTDIMTEGITIVEDINKRREPL---PSLEAVYLITPSEKSVHSLISDFKDPPTAK 95
Query: 74 LTVLPLILNPEREEELLR 91
+ + L
Sbjct: 96 YRAAHVFFTDSCPDALFN 113
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus
thermophilus [TaxId: 274]}
Length = 92
Score = 24.3 bits (53), Expect = 7.8
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 146 VITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLK 194
VIT L S+ REE ++ G S T LV G L+
Sbjct: 14 VITGEL---SRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLE 59
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 817
Score = 25.6 bits (55), Expect = 8.6
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 198 PGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGP 229
PG P GP +M P G GR M GP
Sbjct: 783 AAPGTPTGPFIMQ-PEGMGRLFAIN-KMAEGP 812
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1207
Score = 25.6 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 43 PTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNP 83
P D FA GQ I + P V LI+NP
Sbjct: 957 PQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINP 997
>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 99
Score = 23.9 bits (52), Expect = 9.4
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 84 EREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVE 118
++ + R+ + ++P TK E D
Sbjct: 43 LYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKS 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.390
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 930,038
Number of extensions: 42742
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 17
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.2 bits)