BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18173
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
Length = 463
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 133/190 (70%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVXXXXXXXXXXXXXKGGKEAFHS 60
RVLRRTR+A L L QVTVPIGVLLVIFESRPD LPQV KGGKEA HS
Sbjct: 121 RVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAIASGNGLLLKGGKEAAHS 180
Query: 61 NKALMDVVKEALASVGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ 120
N+ L + +EAL+ G ++A+ LV+TREE+ DL ++K IDLIIPRGSS LVR IQ+ ++
Sbjct: 181 NRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKXIDLIIPRGSSQLVRDIQKAAK 240
Query: 121 HIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTD 180
IPV GH+EGICH YVD +A + K ++ RDSKC+YPAACNA+ETLLIH D + F
Sbjct: 241 GIPVXGHSEGICHXYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQ 300
Query: 181 VCKMFRDEGV 190
+ R E V
Sbjct: 301 IIDXLRVEQV 310
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 115/168 (68%), Gaps = 6/168 (3%)
Query: 7 RLADGLSLSQVTVPIGVLLVIFESRPDSLPQVXXXXXXXXXXXXXKGGKEAFHSNKALMD 66
L DGL+L QVT P+GVLLVIFESRP+ + + KGGKE+ ++ +
Sbjct: 113 ELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNTFREXAK 172
Query: 67 VVKEALASVGAQ-----DAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQH 121
+V + +A ++ ++ L+ TR+++SDLL +++IDL++PRGS+ LVR I+ ++
Sbjct: 173 IVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTK- 231
Query: 122 IPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIH 169
IPVLGHA+GIC +Y+D+DAD+ KA +I+ D+K +YPA CNA ETLLI+
Sbjct: 232 IPVLGHADGICSIYLDEDADLIKAKRISLDAKTNYPAGCNAXETLLIN 279
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 104/183 (56%), Gaps = 5/183 (2%)
Query: 11 GLSLSQVTVPIGVLLVIFESRPDSLPQVXXXXXXXXXXXXXKGGKEAFHSNKALMDVVKE 70
G+ + Q+ VP+GV+ +I+ESRP+ +GG EA SN AL ++ E
Sbjct: 128 GIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKLIGE 187
Query: 71 ALASVG-AQDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGH 127
LA G QD + +V T R + L++M +++D+I+PRG L+ + +++ +P++ H
Sbjct: 188 GLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEAR-VPMIKH 246
Query: 128 AEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTDVCKMFRD 187
+GICHVYVD A + KA+ + ++K CN METLL+ + + + +++R+
Sbjct: 247 LDGICHVYVDDRASVTKALTVCDNAKTHRYGTCNTMETLLVARG-IAPAVLSPLGRLYRE 305
Query: 188 EGV 190
+GV
Sbjct: 306 KGV 308
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 5/184 (2%)
Query: 10 DGLSLSQVTVPIGVLLVIFESRPDSLPQVXXXXXXXXXXXXXKGGKEAFHSNKALMDVVK 69
DGL +++V VPIG + +I+ESRP+ + +GG +A +SNKA++ ++
Sbjct: 115 DGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIR 174
Query: 70 EALASVG-AQDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLG 126
EAL + ++ + R + + + + +++ L+IPRG L+ S + + +PVL
Sbjct: 175 EALKETEIPESSVEFIENTDRSLVLEXIRLREYLSLVIPRGGYGLI-SFVRDNATVPVLE 233
Query: 127 HAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTDVCKMFR 186
G CH++VD+ AD++KA+ + ++K P CNA E LL+HE F + + R
Sbjct: 234 TGVGNCHIFVDESADLKKAVPVIINAKTQRPGTCNAAEKLLVHE-KIAKEFLPVIVEELR 292
Query: 187 DEGV 190
GV
Sbjct: 293 KHGV 296
>pdb|3K9D|A Chain A, Crystal Structure Of Probable Aldehyde Dehydrogenase From
Listeria Monocytogenes Egd-E
pdb|3K9D|B Chain B, Crystal Structure Of Probable Aldehyde Dehydrogenase From
Listeria Monocytogenes Egd-E
pdb|3K9D|C Chain C, Crystal Structure Of Probable Aldehyde Dehydrogenase From
Listeria Monocytogenes Egd-E
pdb|3K9D|D Chain D, Crystal Structure Of Probable Aldehyde Dehydrogenase From
Listeria Monocytogenes Egd-E
Length = 464
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 59 HSN--KALMDVVK---EALASVG-AQDAISLVSTRE-EISDLLSMEKHIDLIIPRGSSDL 111
H N KA+++ V+ EA G + AIS ++ + +D L K +I+ G S +
Sbjct: 144 HPNALKAILETVRIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAM 203
Query: 112 VRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKC-DYPAACNAMETLLIHE 170
V++ S P +G G ++++ A+I +A+K DSK D C + +++++
Sbjct: 204 VKA--AYSSGTPAIGVGPGNGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVER 261
Query: 171 DHFQGSFFTDVCKMFRDEG 189
+ + V FR +G
Sbjct: 262 VNKEA-----VIAEFRKQG 275
>pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 106 RGSSDLVRSIQQKSQHIP-VLGHAEGICHVYVDKDADIRKAIKIAR 150
RG +L + +H+ VLG AE I ++ D++ D KA+K R
Sbjct: 27 RGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEETDKDKALKTIR 72
>pdb|2IB1|A Chain A, Solution Structure Of P45 Death Domain
Length = 91
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 57 AFHSNKALMDVVKEALASVGAQDAISLVSTREEISDLL 94
A N+A + V+++ALA++G +D + ++S+ E S ++
Sbjct: 54 AQEGNRATLRVLEDALAAIGREDVVQVLSSPAESSSVV 91
>pdb|3PRL|A Chain A, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125
pdb|3PRL|B Chain B, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125
pdb|3PRL|C Chain C, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125
pdb|3PRL|D Chain D, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125
pdb|3RHH|A Chain A, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125 Complexed With Nadp
pdb|3RHH|B Chain B, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125 Complexed With Nadp
pdb|3RHH|C Chain C, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125 Complexed With Nadp
pdb|3RHH|D Chain D, Crystal Structure Of Nadp-Dependent
Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus
Halodurans C-125 Complexed With Nadp
Length = 505
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 70 EALASVGAQDAISLVSTREE--ISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGH 127
EALA GA + I V T I D L ID+I G + I +K++ IPV+
Sbjct: 200 EALADAGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISEKAKMIPVVLE 259
Query: 128 AEGICHVYVDKDADIR 143
G V DAD++
Sbjct: 260 LGGKDPAIVLDDADLK 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,733,239
Number of Sequences: 62578
Number of extensions: 163125
Number of successful extensions: 465
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 16
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)