RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18173
(191 letters)
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 271 bits (697), Expect = 2e-91
Identities = 83/193 (43%), Positives = 127/193 (65%), Gaps = 5/193 (2%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHS 60
VLR L +GL + +V VP+GV+ +I+ESRP+ AAL L S N ++L+GG EA HS
Sbjct: 90 EVLRGWTLPNGLQIEKVRVPLGVIGIIYESRPNVTVDAAALCLKSGNAVILRGGSEALHS 149
Query: 61 NKALMDVVKEALASVG-AQDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQ 117
N+AL+++++EAL G +DA+ L+ RE + +LL ++ +IDLIIPRG + L+R + +
Sbjct: 150 NRALVEIIQEALEEAGLPEDAVQLIPDTDREAVQELLKLDDYIDLIIPRGGAGLIRFVVE 209
Query: 118 KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSF 177
+ IPV+ H +G CHVYVD+ AD+ A++I ++K P+ CNA+ETLL+H D F
Sbjct: 210 NA-TIPVIKHGDGNCHVYVDESADLEMAVRIVVNAKTQRPSVCNALETLLVHRD-IAEEF 267
Query: 178 FTDVCKMFRDEGV 190
+ + R+ GV
Sbjct: 268 LPKLAEALREAGV 280
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region [Amino acid
biosynthesis, Glutamate family].
Length = 715
Score = 261 bits (668), Expect = 9e-84
Identities = 113/190 (59%), Positives = 141/190 (74%), Gaps = 1/190 (0%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHS 60
RVL+RTR+AD L L + +VPIGVLL++FESRPD+L Q+A+LA+ S NGLLLKGGKEA S
Sbjct: 378 RVLKRTRIADNLILEKTSVPIGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAARS 437
Query: 61 NKALMDVVKEALASVGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ 120
N L V+ EA+ + I LV++REEI DLL ++ IDL+IPRGS+ LV I +KS
Sbjct: 438 NAILHKVITEAIPIHVGKKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQI-KKST 496
Query: 121 HIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTD 180
IPVLGHA+GICHVYVDK A + A +I RD+KCDYPAACNAMETLL+H+D + D
Sbjct: 497 KIPVLGHADGICHVYVDKSASVDMAKRIVRDAKCDYPAACNAMETLLVHKDLLRNGLLDD 556
Query: 181 VCKMFRDEGV 190
+ M R EGV
Sbjct: 557 LIDMLRTEGV 566
>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 258 bits (660), Expect = 1e-82
Identities = 107/191 (56%), Positives = 135/191 (70%), Gaps = 1/191 (0%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHS 60
RVL+RT +ADGL L + + P+GVLL+IFESRPD+L Q+A+LA+ S NGLLLKGGKEA S
Sbjct: 386 RVLKRTEVADGLVLEKTSCPLGVLLIIFESRPDALVQIASLAIRSGNGLLLKGGKEAARS 445
Query: 61 NKALMDVVKEALASVGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ 120
N L V+ +A+ I LV++R+EI DLL ++ IDL+IPRGS+ LV I+ S
Sbjct: 446 NAILHKVITDAIPKTVGGKLIGLVTSRDEIPDLLKLDDVIDLVIPRGSNKLVSQIKA-ST 504
Query: 121 HIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTD 180
IPVLGHA+GICHVYVDK AD+ A +I D+K DYPAACNAMETLL+H+D Q D
Sbjct: 505 KIPVLGHADGICHVYVDKSADMDMAKRIVVDAKTDYPAACNAMETLLVHKDLVQNGGLND 564
Query: 181 VCKMFRDEGVN 191
+ R GV
Sbjct: 565 LLVALRSAGVT 575
>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
Length = 417
Score = 239 bits (613), Expect = 2e-78
Identities = 83/193 (43%), Positives = 125/193 (64%), Gaps = 5/193 (2%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHS 60
VL L +GL + +V VP+GV+ VI+ESRP+ AAL L S N ++L+GG EA HS
Sbjct: 96 EVLDGWTLPNGLRIGRVRVPLGVIGVIYESRPNVTVDAAALCLKSGNAVILRGGSEAIHS 155
Query: 61 NKALMDVVKEALASVGA-QDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQ 117
N+AL+ V++EAL G DA+ LV T R + +LL ++ ++D+IIPRG + L+R + +
Sbjct: 156 NRALVAVIQEALEEAGLPADAVQLVETTDRAAVGELLKLDGYVDVIIPRGGAGLIRRVVE 215
Query: 118 KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSF 177
+ +PV+ H +GICH+YVD+ AD+ KA+KI ++K P+ CNA+ETLL+HE F
Sbjct: 216 NAT-VPVIEHGDGICHIYVDESADLDKALKIVLNAKTQRPSVCNALETLLVHEA-IAEEF 273
Query: 178 FTDVCKMFRDEGV 190
+ + + GV
Sbjct: 274 LPKLAEALAEAGV 286
>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
transport and metabolism].
Length = 417
Score = 223 bits (572), Expect = 2e-72
Identities = 81/193 (41%), Positives = 124/193 (64%), Gaps = 5/193 (2%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHS 60
V+ L +GL + +V VP+GV+ VI+ESRP+ AAL L S N ++L+GG EA HS
Sbjct: 95 EVIDGWTLPNGLQIYRVRVPLGVIGVIYESRPNVTVDAAALCLKSGNAVILRGGSEAIHS 154
Query: 61 NKALMDVVKEALASVG-AQDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQ 117
N A+++V++EAL G DA+ L+ REE+ +LL ++ +IDL+IPRG + L+R + +
Sbjct: 155 NAAIVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDLVIPRGGAGLIRRVVE 214
Query: 118 KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSF 177
+ +PV+ H G CH+YVD+ AD+ KA+KI ++K P+ CNA ETLL+H + SF
Sbjct: 215 NAT-VPVIEHGVGNCHIYVDESADLDKALKIIVNAKTQRPSVCNAAETLLVHRAIAK-SF 272
Query: 178 FTDVCKMFRDEGV 190
+ ++ GV
Sbjct: 273 LPKLANALQEAGV 285
>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase. The related
model TIGR01092 describes a full-length fusion protein
delta l-pyrroline-5-carboxylate synthetase that includes
a gamma-glutamyl phosphate reductase region as described
by this model. Alternate name: glutamate-5-semialdehyde
dehydrogenase. The prosite motif begins at residue 332
of the seed alignment although not all of the members of
the family exactly obey the motif [Amino acid
biosynthesis, Glutamate family].
Length = 398
Score = 195 bits (497), Expect = 2e-61
Identities = 83/165 (50%), Positives = 123/165 (74%), Gaps = 4/165 (2%)
Query: 8 LADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHSNKALMDV 67
L GL+L +V VP+GVL VI+E+RP+ +A+L L + N ++L+GGKEA SNKAL++V
Sbjct: 91 LDSGLTLERVRVPLGVLGVIYEARPNVTVDIASLCLKTGNAVILRGGKEAVRSNKALVEV 150
Query: 68 VKEALASVG-AQDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPV 124
+++ALA G A+ L+ T RE +S+LL ++++IDL+IPRG + LVR I+Q S IPV
Sbjct: 151 IQDALAQTGLPVGAVQLIETPSRELVSELLDLDEYIDLLIPRGGNGLVRLIKQTST-IPV 209
Query: 125 LGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIH 169
LGH +GICH+Y+D+ AD+ KAIK+ ++K P+ CNA+ETLL++
Sbjct: 210 LGHGDGICHIYLDESADLIKAIKVIVNAKTQRPSTCNAIETLLVN 254
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 157 bits (399), Expect = 7e-47
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 5/174 (2%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPD-SLPQVAALALASANGLLLKGGKEAFH 59
+ +G + PIGV + I S S A +A+ N + + A
Sbjct: 82 HIQDVLLPDNGETY-VRAFPIGVTMHILPSTNPLSGITSALRGIATRNQCIFRPHPSAPF 140
Query: 60 SNKALMDVVKEALASVGAQDAISLVSTR--EEISDLLSMEKHIDLIIPRGSSDLVRSIQQ 117
+N+AL + + A A+ G + + V E +LLS K IDLI+ G D V + +
Sbjct: 141 TNRALALLFQAADAAHGPKILVLYVPHPSDELAEELLSHPK-IDLIVATGGRDAVDAAVK 199
Query: 118 KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHED 171
S HIPV+G G V VD+ AD +A DSK AC + + L + +D
Sbjct: 200 HSPHIPVIGFGAGNSPVVVDETADEERASGSVHDSKFFDQNACASEQNLYVVDD 253
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 91.9 bits (229), Expect = 2e-22
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 9/174 (5%)
Query: 4 RRTRLADGLSLSQVTVPIGVLLVIFESR-PDSLP-QVAALALASANGLLLKGGKEAFHSN 61
G P+GV+ VI P L A ALA+ N ++LK + +
Sbjct: 76 ELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTA 135
Query: 62 KALMDVVKEALASVGAQDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQ--K 118
AL ++++EA +++V +E+ L +D I GS+ + ++I +
Sbjct: 136 LALAELLQEAGL---PPGVVNVVPGGGDEVGAALLSHPRVDKISFTGSTAVGKAIMKAAA 192
Query: 119 SQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKC-DYPAACNAMETLLIHED 171
PV G V VD+DAD+ A++ A + C A LL+HE
Sbjct: 193 ENLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQICTAASRLLVHES 246
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 47.2 bits (113), Expect = 1e-06
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 23/166 (13%)
Query: 19 VPIGVLLVI----FESRPDSLP--QVAALALASANGLLLKGGKEAFHSNKALMDVVKEAL 72
P+GV+ I F P L ++A ALA+ N ++LK + + L +++ EA
Sbjct: 95 EPLGVVGAITPWNF---PLLLAAWKLAP-ALAAGNTVVLKPSELTPLTALLLAELLAEAG 150
Query: 73 ASVGAQDAISLVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQK-SQH-IPV---LG 126
G +++V+ +E+ L+ +D I GS+ + ++I + +++ V LG
Sbjct: 151 LPPGV---LNVVTGDGDEVGAALASHPRVDKISFTGSTAVGKAIMRAAAENLKRVTLELG 207
Query: 127 HAEGICHVYVDKDADIRKAIKIARDSKCDYPA-ACNAMETLLIHED 171
G + V DAD+ A+K A C A LL+HE
Sbjct: 208 ---GKSPLIVFDDADLDAAVKGAVFGAFGNAGQVCTAASRLLVHES 250
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 45.1 bits (107), Expect = 7e-06
Identities = 34/155 (21%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 20 PIGVLLVIFE-SRPDSLPQV-AALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGA 77
P+GV+L I + P +L A A+A+ ++LK + S L ++ EA G
Sbjct: 123 PVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPASKTPLSALELAKILVEAGVPEGV 182
Query: 78 QDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVD 137
+ RE + D + ++ + ++ GS+ + +++ + + G V VD
Sbjct: 183 LQV--VTGEREVLGDAFAADERVAMLSFTGSAAVGEALRANAGGKRIALELGGNAPVIVD 240
Query: 138 KDADIRKAIKIARDSKCDYPA-ACNAMETLLIHED 171
+DAD+ AI+ + C +++ + +HE+
Sbjct: 241 RDADLDAAIEALAKGGFYHAGQVCISVQRIYVHEE 275
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 44.6 bits (106), Expect = 9e-06
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 1 RVLRRTRLADGLSLSQVT-VPIGVLLVIFESR-PDSLP-QVAALALASANGLLLKGGKEA 57
R+ T D S + V P+GV+ I P +L A ALA+ N ++LK ++
Sbjct: 113 RLEGETIPTDKGSKALVRREPLGVVGAITPWNFPLALAAWKLAPALAAGNTVVLKPSEQT 172
Query: 58 FHSNKALMDVVKEALASVGAQDAISLVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQ 116
S AL ++ EA G +++V+ E+ D L +D I GS+ + R+I
Sbjct: 173 PLSALALAELAAEAGLPAGV---LNVVTGGGAEVGDALVAHPDVDAISFTGSTAVGRAIA 229
Query: 117 QKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARDSK 153
+ PV G V +DAD+ A+ A
Sbjct: 230 AAAAANLKPVTLELGGKSPAIVLEDADLDAAVDAAVFGA 268
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 41.4 bits (97), Expect = 1e-04
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 16 QVTVPIGVLLVIFES-RPDSLPQVAAL-ALASANGLLLKGGKEAFHSNKALMDVVK---E 70
++ VP+GV+ + S P S L ++ + N ++ A K +++ VK +
Sbjct: 100 EIAVPVGVVAGLIPSTNPTSTAIYKTLISIKARNAIVFSPHPNA---KKCIIETVKLMRK 156
Query: 71 ALASVGA-QDAISLVSTRE-EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHA 128
A GA + AI ++ E ++ L K LI+ G +V++ S P +G
Sbjct: 157 AAEEAGAPEGAIGCITVPTIEGTNELMKNKDTSLILATGGEAMVKA--AYSSGTPAIGVG 214
Query: 129 EGICHVYVDKDADIRKAIKIARDSKC-DYPAAC---------NAMETLLIHEDHFQGSFF 178
G Y+++ A+++KA++ DSK D C + ++ E QG +F
Sbjct: 215 PGNGPAYIERTANVKKAVRDIIDSKTFDNGTICASEQSIIVEECNKDAVVEELKKQGGYF 274
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 40.6 bits (96), Expect = 2e-04
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 19 VPIGVLL-VIFESRPDSLPQVAAL-ALASANGLLLKGGKEAFH-----SNKALMDVVKEA 71
P+GV+ +I + P S AL AL + N ++ + H + +++EA
Sbjct: 94 EPVGVIAALIPSTNPTSTAIFKALIALKTRNAIIF-----SPHPRAKKCSIEAAKIMREA 148
Query: 72 LASVGA-QDAISLVSTRE-EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAE 129
+ GA + I + E++ L +DLI+ G +V++ S P +G
Sbjct: 149 AVAAGAPEGLIQWIEEPSIELTQELMKHPDVDLILATGGPGMVKAAY--SSGKPAIGVGP 206
Query: 130 GICHVYVDKDADIRKAIKIARDSKC-DYPAACNAMETLLIHED 171
G Y+D+ ADI++A+K SK D C + +++++ ++
Sbjct: 207 GNVPAYIDETADIKRAVKDIILSKTFDNGTICASEQSVIVDDE 249
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 40.2 bits (95), Expect = 3e-04
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 19 VPIGVLLVI----FESRPDSLP--QVAALALASANGLLLKGGKEAFHSNKALMDVVKEAL 72
P+GV+ I F P L ++A ALA+ N ++LK + + L ++ +EA
Sbjct: 125 EPLGVVGAITPWNF---PLLLAAWKIAP-ALAAGNTVVLKPSELTPLTALLLAELFEEAG 180
Query: 73 ASVGAQDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQH--IPV---LG 126
G +++V+ E+ D L +D + GS+++ R I + + V LG
Sbjct: 181 LPPGV---LNVVTGSGSEVGDALVEHPDVDKVSFTGSTEVGRRIAKAAAKNLKRVTLELG 237
Query: 127 HAEGICHVYVDKDADIRKAIKIARDSKCDYP-AACNAMETLLIHED 171
G + V DAD+ A++ A C A LL+HE
Sbjct: 238 ---GKNPLIVFDDADLDAAVEGAVFGAFGNAGQVCTAGSRLLVHES 280
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 39.1 bits (92), Expect = 7e-04
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 19 VPIGVLLVIFESRPDSLP-----QVAALALASANGLLLKGGKEAFHSNKALMDVVKEALA 73
P+GV+L+I P + P A+A+ ++LK + H+ L ++V + L
Sbjct: 107 EPLGVVLII---GPWNYPVLLALSPLVGAIAAGCTVVLKPSELTPHTAALLAELVPKYLD 163
Query: 74 SVGAQDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS-QHI-PV---LGH 127
DA +V E + LL E+ D I GS + R I + + +H+ PV LG
Sbjct: 164 P----DAFQVVQGGVPETTALL--EQKFDKIFYTGSGRVGRIIAEAAAKHLTPVTLELG- 216
Query: 128 AEGICHVYVDKDADIRKAIK 147
G V V K+AD+ A K
Sbjct: 217 --GKSPVIVTKNADLELAAK 234
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 37.3 bits (87), Expect = 0.002
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 20 PIGVLLVI--FESRPDSLPQVA---ALALASANGLLLKGGKEAFHSNKALMDVVKEALAS 74
P+GV+L I F + P L QVA A A+A+ N ++LK ++ S L D++ EA
Sbjct: 120 PLGVVLAITPF-NHP--LNQVAHKIAPAIAANNRIVLKPSEKTPLSAIYLADLLYEA--- 173
Query: 75 VG-AQDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGIC 132
G D +S+V+ EI D L +DL+ G + ++I + + L G
Sbjct: 174 -GLPPDMLSVVTGEPGEIGDELITHPDVDLVTFTGGVAVGKAIAATAGYKRQLLELGGND 232
Query: 133 HVYVDKDADIRKAIKIARDSKCDYPA-ACNAMETLLIHED 171
+ V DAD+ +A +A C A++ +L+HE
Sbjct: 233 PLIVMDDADLERAATLAVAGSYANSGQRCTAVKRILVHES 272
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 35.1 bits (81), Expect = 0.017
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 20 PIGVLLVIFESRPDSLPQVAAL-----ALASANGLLLKGGKEAFHSNKALMDVVKEALAS 74
P+GV+LVI + P + +L A+A+ N ++LK + A ++ L ++ E L +
Sbjct: 101 PLGVVLVI---SAWNFPFLLSLEPVIGAIAAGNAVVLKPSELAPATSALLAKLIPEYLDT 157
Query: 75 VGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQ-QKSQHI-PVLGHAEGIC 132
AI ++ + L +E+ D I GS + R I ++H+ PV G C
Sbjct: 158 ----KAIKVIEGGVPETTAL-LEQKWDKIFFTGSPRVGRIIMAAAAKHLTPVTLELGGKC 212
Query: 133 HVYVDKDADIRKAIK--IARDSKCDYPAACNAMETLLIHED 171
V VD D++ A++ C+ AC A + +L+ E
Sbjct: 213 PVIVDSTVDLKVAVRRIAGGKWGCNNGQACIAPDYVLVEES 253
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 34.9 bits (81), Expect = 0.018
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 23/166 (13%)
Query: 19 VPIGVLLVIFESRPDSLP-----QVAALALASANGLLLKGGKEAFHSNKALMDVVKEALA 73
VPIGV+ I P + P + A AL + N +++K +E + ++V EA
Sbjct: 132 VPIGVVAGIL---PWNFPFFLIARKLAPALVTGNTIVIKPSEETPLNALEFAELVDEAGL 188
Query: 74 SVGAQDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQK-SQHIPVL-----G 126
G +++V+ R + D L + +I GS++ + I + +++I + G
Sbjct: 189 PAGV---LNIVTGRGSVVGDALVAHPKVGMISLTGSTEAGQKIMEAAAENITKVSLELGG 245
Query: 127 HAEGICHVYVDKDADIRKAIKIARDSKCDYPA-ACNAMETLLIHED 171
A I V KDAD+ A+K DS+ C E + +HED
Sbjct: 246 KAPAI----VMKDADLDLAVKAIVDSRIINCGQVCTCAERVYVHED 287
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 34.8 bits (81), Expect = 0.018
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 27/141 (19%)
Query: 20 PIGVLLVI----FESRPDSL---PQVAALALASANGLLLKGGKEAFHSNKALMDVVKEAL 72
P+GV+L+I + P L P + A+A + N ++LK + A ++ L ++ +
Sbjct: 100 PLGVVLIIGPWNY---PLQLALAPLIGAIA--AGNTVVLKPSELAPATSALLAKLIPKYF 154
Query: 73 ASVGAQDAISLVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQK-SQH-IPV---LG 126
+A+++V E + LL + D I GS + + + + ++H PV LG
Sbjct: 155 DP----EAVAVVEGGVEVATALL--AEPFDHIFFTGSPAVGKIVMEAAAKHLTPVTLELG 208
Query: 127 HAEGICHVYVDKDADIRKAIK 147
G VDKDA++ A +
Sbjct: 209 ---GKSPCIVDKDANLEVAAR 226
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 34.1 bits (79), Expect = 0.033
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 39 AALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGAQDAI-SLVSTREEISDLLSME 97
AA+AL N ++ K + + A+ ++ E L G + +LV+ + +LL +
Sbjct: 154 AAIALVCGNTVVWKPSETTPLTAIAVTKILAEVLEKNGLPPGVVNLVTGGGDGGELLVHD 213
Query: 98 KHIDLIIPRGSSDLVRSIQQKSQ 120
+ L+ GS+++ R + +
Sbjct: 214 PRVPLVSFTGSTEVGRRVGETVA 236
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 34.1 bits (78), Expect = 0.034
Identities = 28/175 (16%), Positives = 63/175 (36%), Gaps = 8/175 (4%)
Query: 17 VTVPIGVLLVIFESR-PDS--LPQVAALALASANGLLLKGGKEAFHSNKALMDVVKEALA 73
P G +LVI P L Q+A ALA N +++K + ++ ++ A
Sbjct: 97 YRWPYGPVLVIGAFNFPLWIPLLQLAG-ALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGL 155
Query: 74 SVGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICH 133
+ ++L++ + L + + +++ GSS + + ++ + G
Sbjct: 156 L--PPEDVTLINGDGKTMQALLLHPNPKMVLFTGSSRVAEKLALDAKQARIYLELAGFNW 213
Query: 134 VYVDKDADIRKAI--KIARDSKCDYPAACNAMETLLIHEDHFQGSFFTDVCKMFR 186
+ DA + + +D C A L + E+ + + +
Sbjct: 214 KVLGPDAQAVDYVAWQCVQDMTACSGQKCTAQSMLFVPENWSKTPLVEKLKALLA 268
>gnl|CDD|218799 pfam05893, LuxC, Acyl-CoA reductase (LuxC). This family consists
of several bacterial Acyl-CoA reductase (LuxC) proteins.
The channelling of fatty acids into the fatty aldehyde
substrate for the bacterial bioluminescence reaction is
catalyzed by a fatty acid reductase multienzyme complex,
which channels fatty acids through the thioesterase
(LuxD), synthetase (LuxE) and reductase (LuxC)
components.
Length = 400
Score = 33.9 bits (78), Expect = 0.035
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 79 DAISLV---STREEISDLLSMEKHIDLIIPRGSSDLVRSI-QQKSQHIPVLGHAEGICHV 134
+IS+V S ++ L+ +H D++I G + ++ I + + I
Sbjct: 148 RSISVVYWHSGDTQLEQLIM--QHADVVIAWGGEEAIKWIRKHLPPGCDWIKFGPKISFA 205
Query: 135 YVDKDADIRKAI-KIARDSKCDYPAACNAMETLLIHED 171
VD A I KA +A D AC++ + + + D
Sbjct: 206 VVDPPAAIDKAADGVAHDICFYDQQACSSPQVVFVESD 243
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 33.8 bits (78), Expect = 0.040
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 20 PIGVLLVIFESRPDSLPQV-----AALALASANGLLLKGGKEAFHSNKALMDVVKEALAS 74
P+GV+ I P + P + A ALA+ N ++LK +E + ++++EA
Sbjct: 119 PLGVVAGI---TPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEA--- 172
Query: 75 VGAQDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEG 130
G + V T E+ D L + + ++ GS+ + R I +K+ + G
Sbjct: 173 -GLPKGVFNVVTGGGAEVGDELVDDPRVRMVTFTGSTAVGREIAEKAGRHLKKITLELGG 231
Query: 131 ICHVYVDKDADIRKAIKIARDSK-CDYPAACNAMETLLIHEDHFQ 174
+ V DAD+ A++ A C + +++ E +
Sbjct: 232 KNPLIVLADADLDYAVRAAAFGAFMHQGQICMSASRIIVEEPVYD 276
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 33.5 bits (77), Expect = 0.050
Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 20 PIGVLLVIFE-SRP--DSLPQVAALALASANGLLLKGGKEAFHSNKALMDVVKEALASVG 76
P+GV+LVI + P +L +A A+A+ N ++LK + + H++K + ++ + L
Sbjct: 109 PLGVVLVIGAWNYPLNLTLIPLAG-AIAAGNTVVLKPSELSPHTSKLMAKLLTKYLD--- 164
Query: 77 AQDAISLVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQ-KSQH-IPVLGHAEGICH 133
+ ++ E ++LL ++ D I GS + + + Q +++ P G
Sbjct: 165 -PSYVRVIEGGVEVTTELL--KEPFDHIFFTGSPRVGKLVMQAAAENLTPCTLELGGKSP 221
Query: 134 VYVDKDADIRKAIK 147
V VDK +++ A +
Sbjct: 222 VIVDKSCNLKVAAR 235
>gnl|CDD|143400 cd07081, ALDH_F20_ACDH_EutE-like, Coenzyme A acylating aldehyde
dehydrogenase (ACDH), Ethanolamine utilization protein
EutE, and related proteins. Coenzyme A acylating
aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent
acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10),
functions as a single enzyme (such as the Ethanolamine
utilization protein, EutE, in Salmonella typhimurium) or
as part of a multifunctional enzyme to convert
acetaldehyde into acetyl-CoA. The E. coli
aldehyde-alcohol dehydrogenase includes the functional
domains, alcohol dehydrogenase (ADH), ACDH, and
pyruvate-formate-lyase deactivase; and the Entamoeba
histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1)
includes the functional domains ADH and ACDH, and may be
critical enzymes in the fermentative pathway.
Length = 439
Score = 32.2 bits (73), Expect = 0.14
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 20 PIGVLLVIFES-RPDSLPQVAAL-ALASANGLLLKGGKEAFH-SNKALMDVVKEALASVG 76
PIGV+ I S P S +L +L + N ++ A + +A +++ A+A+
Sbjct: 95 PIGVVASITPSTNPTSTVIFKSLISLKTRNSIIFSPHPRAKKVTQRAATLLLQAAVAAGA 154
Query: 77 AQDAISLVSTRE-EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVY 135
++ I + E++ L I L++ G +V++ + P +G G V
Sbjct: 155 PENLIGWIDNPSIELAQRLMKFPGIGLLLATGGPAVVKAAYSSGK--PAIGVGAGNTPVV 212
Query: 136 VDKDADIRKAI 146
+D+ ADI++A+
Sbjct: 213 IDETADIKRAV 223
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 31.4 bits (72), Expect = 0.23
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 19 VPIGVLLVI--FESRPDSLPQVA---ALALASANGLLLKGGKEAFHSNKALMDVVKEALA 73
PIGV+ I F L VA A+A+ N ++LK + S L +++ EA
Sbjct: 122 EPIGVVAAITPFN---FPLNLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEA-- 176
Query: 74 SVGA-QDAISLVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPV---LGHA 128
G + A+++V+ + E + D L + + +I GS + +I +K+ V LG
Sbjct: 177 --GLPKGALNVVTGSGETVGDALVTDPRVRMISFTGSPAVGEAIARKAGLKKVTLELG-- 232
Query: 129 EGICHVYVDKDADIRKAIK 147
V VD DAD+ KA++
Sbjct: 233 -SNAAVIVDADADLEKAVE 250
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 31.1 bits (71), Expect = 0.36
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 19 VPIGVLLVIFESRPDSLPQVAAL-----ALASANGLLLKGGKEAFHSNKALM--DVVKEA 71
P+GV+L+I P + P + A+ AL + N ++LK HS + + + A
Sbjct: 115 EPLGVVLIIA---PWNYPYLTAVNAVIPALLAGNAVILK------HSPQTPLCGERFAAA 165
Query: 72 LASVGAQDAI--SLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQH--IPV--- 124
A G + + L + E + L++ + ID + GS R+IQ+ + I V
Sbjct: 166 FAEAGLPEGVFQVLHLSHETSAALIA-DPRIDHVSFTGSVAGGRAIQRAAAGRFIKVGLE 224
Query: 125 LGHAEGICHVYVDKDADIRKAI 146
LG G YV DAD+ A
Sbjct: 225 LG---GKDPAYVRPDADLDAAA 243
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 30.6 bits (69), Expect = 0.53
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 35 LPQVA---ALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGAQDAISLVSTRE--E 89
+ QVA A A+A+ N +++K ++ S L D++ EA G + V T + E
Sbjct: 153 MNQVAHKIAPAIATNNRMVVKPSEKTPLSALYLADILYEA----GLPPQMLQVVTGDPRE 208
Query: 90 ISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIA 149
I+D L H+DL+ G + + I ++ + + G + V +DAD+ +A +A
Sbjct: 209 IADELITNPHVDLVTFTGGVAIGKYIAARAGYRRQVLELGGNDPLIVMEDADLDRAADLA 268
Query: 150 -RDSKCDYPAACNAMETLLIHE 170
+ S + C A++ +L+ E
Sbjct: 269 VKGSYKNSGQRCTAVKRMLVQE 290
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 28.9 bits (65), Expect = 1.8
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 21/164 (12%)
Query: 19 VPIGVLLVI--FESRPDSLPQVAALALASANGLLLKGGKEAFHSNKALMDVVK--EALAS 74
PIGV+ I F + A A+A N +++K S+ + ++ + L
Sbjct: 122 EPIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVVK------PSSNTPLTAIELAKILEE 175
Query: 75 VGAQDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQH-----IPVLGH 127
G + V T E+ D + +++I GS+ + I K+ LG
Sbjct: 176 AGLPPGVINVVTGYGSEVGDEIVTNPKVNMISFTGSTAVGLLIASKAGGTGKKVALELGG 235
Query: 128 AEGICHVYVDKDADIRKAIKIARDSKCDYPAA-CNAMETLLIHE 170
++ + V KDAD+ +A+ IA + + CNA++ +L+ E
Sbjct: 236 SDPMI---VLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEE 276
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 28.7 bits (64), Expect = 2.4
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 17 VTVPIGVLLVIFESRPDSLP-----QVAALALASANGLLLKGGKEAFHSNKALMDVVKEA 71
V P GV +VI P + P + + + N ++LK + A +++++EA
Sbjct: 164 VYTPTGVTVVI---SPWNFPFAIMVGMTVAPIVTGNCVVLKPAEAAPVIAAKFVEILEEA 220
Query: 72 LASVGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSSDL-------VRSIQQKSQHIP- 123
G + + E+ D L LI GS ++ +Q +H+
Sbjct: 221 GLPKGVVQFVPGSGS--EVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPGQKHLKR 278
Query: 124 VLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPA-ACNAMETLLIHE 170
V+ G V VD+DADI A + A S + C+A ++HE
Sbjct: 279 VIAEMGGKDTVIVDEDADIELAAQSAFTSAFGFAGQKCSAGSRAVVHE 326
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 28.3 bits (64), Expect = 2.6
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 88 EEISDLLSMEKHIDLIIPRGSSDLVRSIQQ-KSQHI-PV---LGHAEGICHVYVDKDADI 142
EE ++LL ++ D I GS+ + + + Q ++H+ PV LG G YVDK DI
Sbjct: 167 EETTELL--KQRFDYIFYTGSTSVGKIVMQAAAKHLTPVTLELG---GKSPCYVDKSCDI 221
Query: 143 RKAIK 147
A +
Sbjct: 222 DVAAR 226
>gnl|CDD|129196 TIGR00088, trmD, tRNA (guanine-N1)-methyltransferase. This model
is specfic for the tRNA modification enzyme tRNA
(guanine-N1)-methyltransferase (trmD). This enzyme
methylates guanosime-37 in a number of tRNAs.The
enzyme's catalytic activity is as follows:
S-adenosyl-L-methionine + tRNA =
S-adenosyl-L-homocysteine + tRNA containing
N1-methylguanine [Protein synthesis, tRNA and rRNA base
modification].
Length = 233
Score = 27.4 bits (61), Expect = 4.4
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 87 REEISDLLSMEKHIDLIIPRG---SSDLVRSIQQKSQHIPVLGHAEG----ICHVYVDKD 139
R+ + + + + L+ P+G R + Q I + G EG I + VD++
Sbjct: 68 RDALHSVKAPAGTVILLSPQGRKFDQAGARELAQNEHLILICGRYEGFDERIIQLEVDEE 127
Query: 140 ADI 142
I
Sbjct: 128 ISI 130
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 27.4 bits (61), Expect = 5.3
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 15/141 (10%)
Query: 39 AALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGAQDAISLVSTR-EEISDLLSME 97
A AL + N +++K + ++ A +V E G +LV R E + L+
Sbjct: 92 MAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGV---FNLVLGRGETVGQELAGN 148
Query: 98 KHIDLIIPRGSSDLVRSIQQK-SQHIPVL-----GHAEGICHVYVDKDADIRKAIKIARD 151
+ ++ GS I +++I + G A I V DAD+ A+K D
Sbjct: 149 PKVAMVSMTGSVSAGEKIMAAAAKNITKVCLELGGKAPAI----VMDDADLDLAVKAIVD 204
Query: 152 SK-CDYPAACNAMETLLIHED 171
S+ + CN E + + +
Sbjct: 205 SRVINSGQVCNCAERVYVQKG 225
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 26.7 bits (60), Expect = 5.6
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 89 EISDLLSMEKHIDLII-------PRGSSDLVRSIQQKSQHIPV----LGHAEGICHVY 135
EI+ + D I+ P + + I+ + +P+ LGH + I +
Sbjct: 32 EITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGH-QAIAEAF 88
>gnl|CDD|130799 TIGR01738, bioH, pimelyl-[acyl-carrier protein] methyl ester
esterase. This CoA-binding enzyme is required for the
production of pimeloyl-coenzyme A, the substrate of the
BioF protein early in the biosynthesis of biotin. Its
exact function is unknown, but is proposed in ref 2.
This enzyme belongs to the alpha/beta hydrolase fold
family (Pfam model pfam00561). Members of this family
are restricted to the Proteobacteria [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 245
Score = 26.7 bits (59), Expect = 8.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 118 KSQHIPVLGHAEGICHVYVD 137
K+ H P L HAE C + V
Sbjct: 224 KAAHAPFLSHAEAFCALLVA 243
>gnl|CDD|205591 pfam13413, HTH_25, Helix-turn-helix domain. This domain is a
helix-turn-helix domain that probably binds to DNA.
Length = 62
Score = 24.7 bits (55), Expect = 9.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 2 VLRRTRLADGLSLSQVT----VPIGVLLVIFESRPDSLP 36
LR R A GLSL V + L + E D+LP
Sbjct: 1 RLREAREARGLSLEDVAARTKIRPRYLEALEEGDFDALP 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.381
Gapped
Lambda K H
0.267 0.0870 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,613,948
Number of extensions: 894748
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 60
Length of query: 191
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 100
Effective length of database: 6,901,388
Effective search space: 690138800
Effective search space used: 690138800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.1 bits)