RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18173
(191 letters)
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 288 bits (740), Expect = 2e-97
Identities = 121/190 (63%), Positives = 148/190 (77%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHS 60
RVLRRTR+A L L QVTVPIGVLLVIFESRPD LPQVAALA+AS NGLLLKGGKEA HS
Sbjct: 121 RVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAIASGNGLLLKGGKEAAHS 180
Query: 61 NKALMDVVKEALASVGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ 120
N+ L + +EAL+ G ++A+ LV+TREE+ DL ++K IDLIIPRGSS LVR IQ+ ++
Sbjct: 181 NRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAK 240
Query: 121 HIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTD 180
IPV+GH+EGICH+YVD +A + K ++ RDSKC+YPAACNA+ETLLIH D + F
Sbjct: 241 GIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQ 300
Query: 181 VCKMFRDEGV 190
+ M R E V
Sbjct: 301 IIDMLRVEQV 310
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 255 bits (654), Expect = 2e-84
Identities = 85/195 (43%), Positives = 133/195 (68%), Gaps = 8/195 (4%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHS 60
+V L DGL+L QVT P+GVLLVIFESRP+ + + AL++ S N +LKGGKE+ ++
Sbjct: 107 KVKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNT 166
Query: 61 NKALMDVVKEALASVGA-----QDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSI 115
+ + +V + +A + ++ L+ TR+++SDLL +++IDL++PRGS+ LVR I
Sbjct: 167 FREMAKIVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKI 226
Query: 116 QQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQG 175
+ ++ IPVLGHA+GIC +Y+D+DAD+ KA +I+ D+K +YPA CNAMETLLI+
Sbjct: 227 KDTTK-IPVLGHADGICSIYLDEDADLIKAKRISLDAKTNYPAGCNAMETLLINPK--FS 283
Query: 176 SFFTDVCKMFRDEGV 190
++ + + + GV
Sbjct: 284 KWWEVLENLTLEGGV 298
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 207 bits (529), Expect = 5e-66
Identities = 64/193 (33%), Positives = 111/193 (57%), Gaps = 5/193 (2%)
Query: 1 RVLRRTRLADGLSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHS 60
V+ DGL +++V VPIG + +I+ESRP+ + LAL S N +LL+GG +A +S
Sbjct: 106 EVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNS 165
Query: 61 NKALMDVVKEALASVG-AQDAISLVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQ 117
NKA++ ++EAL + ++ + R + +++ + +++ L+IPRG L+ ++
Sbjct: 166 NKAIVSAIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRD 225
Query: 118 KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSF 177
+ +PVL G CH++VD+ AD++KA+ + ++K P CNA E LL+HE F
Sbjct: 226 NAT-VPVLETGVGNCHIFVDESADLKKAVPVIINAKTQRPGTCNAAEKLLVHEK-IAKEF 283
Query: 178 FTDVCKMFRDEGV 190
+ + R GV
Sbjct: 284 LPVIVEELRKHGV 296
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 67.0 bits (164), Expect = 1e-13
Identities = 40/185 (21%), Positives = 83/185 (44%), Gaps = 12/185 (6%)
Query: 10 DGLSLSQVTVPIGVLLVIFES-RPDSLP-QVAALALASANGLLLKGGKEAFHSNKALMDV 67
+ + +V VP+GV+ + S P S +++ + N ++ A + + +
Sbjct: 98 NEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETVRI 157
Query: 68 VKEALASVGA-QDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVL 125
+ EA G + AIS ++ + +D L K +I+ G S +V++ S P +
Sbjct: 158 ISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAY--SSGTPAI 215
Query: 126 GHAEGICHVYVDKDADIRKAIKIARDSKC-DYPAACNAMETLLIHEDHFQGSFFTDVCKM 184
G G ++++ A+I +A+K DSK D C + +++++ + + V
Sbjct: 216 GVGPGNGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERVNKE-----AVIAE 270
Query: 185 FRDEG 189
FR +G
Sbjct: 271 FRKQG 275
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 60.8 bits (148), Expect = 2e-11
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 10 DGLSLSQVTVPIGVLLVIFESRPDSLPQV-----AALALASANGLLLKGGKEAFHSNKAL 64
D L + P+G++ I P + P + ++L + NG++ A +S
Sbjct: 93 DNLGTMTIAEPVGIICGIV---PTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDA 149
Query: 65 MDVVKEALASVGA-QDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHI 122
+V +A + GA +D I + E+S+ L I LI+ G +V++ S
Sbjct: 150 AKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAY--SSGK 207
Query: 123 PVLGHAEGICHVYVDKDADIRKAIKIARDSKC-DYPAACNAMETLLIHED 171
P +G G V +D+ ADI++A+ SK D C + + +++ ++
Sbjct: 208 PAIGVGAGNVPVVIDETADIKRAVASVLMSKTFDNGVVCASEQAVIVVDE 257
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-05
Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 68/177 (38%)
Query: 12 LSLSQVTVPIGVLLVIFESRPDSLPQVAALALASANGLLLKGGKEAFHSNKALMDVVKE- 70
LS +Q T P L ++ + AA + GL+ A HS + E
Sbjct: 1726 LSATQFTQP--ALTLM---------EKAAFEDLKSKGLIPADATFAGHS-------LGEY 1767
Query: 71 -ALASV-GA---QDAISLVSTR-------------------------EEISDLLSMEKHI 100
ALAS+ + + +V R ++ S E
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 101 DLI--IPRGSSDLVRSI-------QQKSQHIPVLGHAEGICHVYVDKDADIRKAIKI 148
++ + + + LV I QQ G +D ++ IK+
Sbjct: 1828 YVVERVGKRTGWLV-EIVNYNVENQQ----YVAAGDLRA-----LDTVTNVLNFIKL 1874
Score = 41.6 bits (97), Expect = 9e-05
Identities = 34/197 (17%), Positives = 58/197 (29%), Gaps = 77/197 (39%)
Query: 12 LSLSQVTVP-IGVL-----LVIFES---RPDSLPQ------------VAALALASANGLL 50
L ++ P IGV+ +V + P L V A+A+A
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET---- 286
Query: 51 LKGGKEAFHSN--KALMDVVKEALASVG--AQDAISLVSTREEI-SDLL--------SME 97
E+F + KA+ L +G +A S I D L M
Sbjct: 287 --DSWESFFVSVRKAI-----TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM- 338
Query: 98 KHIDLIIPRGSSD--LVRSIQQKSQHIP----------------VL-GHAEGICHVYVDK 138
L I + + + + + H+P V+ G + + +
Sbjct: 339 ----LSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL---- 389
Query: 139 DADIRKAIKIARDSKCD 155
+ +R K S D
Sbjct: 390 NLTLR---KAKAPSGLD 403
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.005
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 9/24 (37%)
Query: 28 FESR-----PDSLPQVAALAL-AS 45
++ DS P ALA+ A+
Sbjct: 25 LQASLKLYADDSAP---ALAIKAT 45
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 33.2 bits (76), Expect = 0.040
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 25/167 (14%)
Query: 20 PIGVLLVIFESRPDSLP------QVAALALASANGLLLKGGKEAFHSNKALMDVVKEALA 73
GV + I P + P QV A AL + N ++ K ++ + + ++ EA
Sbjct: 649 GRGVFVAI---SPWNFPLAIFLGQVTA-ALMAGNSVVAKPAEQTPRIAREAVALLHEA-- 702
Query: 74 SVGA-QDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS-----QHIPVLGH 127
G + A+ LV+ I L+ I ++ GS+++ RSI + +P++
Sbjct: 703 --GIPKSALYLVTGDGRIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLI-- 758
Query: 128 AE--GICHVYVDKDADIRKAIKIARDSKCDYPA-ACNAMETLLIHED 171
AE GI + D A + S C+A+ L + ED
Sbjct: 759 AETGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQED 805
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 32.9 bits (76), Expect = 0.052
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 29/142 (20%)
Query: 20 PIGVLLVI----FESRPDSL---PQVAALALASA-NGLLLKGGKEAFHSNKALMDVVKEA 71
P+GV+LVI + P +L P V A+A A N ++LK + + + L ++ +
Sbjct: 120 PLGVVLVIGTWNY---PFNLTIQPMVGAIA---AGNAVVLKPSELSENMASLLATIIPQY 173
Query: 72 LASVGAQDAISLVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQK-SQH-IPV---L 125
L +D +++ E ++LL ++ D I+ GS+ + + I ++H PV L
Sbjct: 174 LD----KDLYPVINGGVPETTELL--KERFDHILYTGSTGVGKIIMTAAAKHLTPVTLEL 227
Query: 126 GHAEGICHVYVDKDADIRKAIK 147
G G YVDK+ D+ A +
Sbjct: 228 G---GKSPCYVDKNCDLDVACR 246
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 32.7 bits (75), Expect = 0.061
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 29/171 (16%)
Query: 20 PIGVLLVI----FESRPDSLP--QVAALALASANGLLLKGGKEAFHSNKALMDVVKEALA 73
P GV VI F P ++ +A A+ + N ++ K L+++ +EA
Sbjct: 666 PKGVAAVIAPWNF---PLAISMGMASA-AIVTGNCVVFKPSGITSIIGWHLVELFREA-- 719
Query: 74 SVGA-QDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQK-SQHIPVLGH--- 127
G + + R + D L I LI GS + I ++ ++ P +
Sbjct: 720 --GLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIERAAKVHPGQANVKK 777
Query: 128 --AE--GICHVYVDKDADIRKAIKIARDSKCDYPAA---CNAMETLLIHED 171
+E G + +D DAD+ +A+ S + C+A +++ +
Sbjct: 778 IISEMGGKNAIIIDDDADLDEAVPHVLYSAFGF--QGQKCSACSRVIVLDA 826
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 31.6 bits (72), Expect = 0.12
Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 10/147 (6%)
Query: 14 LSQVTVPIGVLLVIFESR-PDSLPQVA---ALALASANGLLLKGGKEAFHSNKALMDVVK 69
+ V P+G + V S P + A ALA+ +++KG + + + + V
Sbjct: 163 IRLVQRPVGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVD 222
Query: 70 EALASVGAQDAI-SLVSTR-EEISDLLSMEKHIDLIIPRGSSD----LVRSIQQKSQHIP 123
A+ G + SL+ ++ L HI + GS L + + IP
Sbjct: 223 AAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLAGGRALFDLCAARPEPIP 282
Query: 124 VLGHAEGICHVYVDKDADIRKAIKIAR 150
G + +++ +A +A + +
Sbjct: 283 FFGELGSVNPMFLLPEALKARAETLGQ 309
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 31.2 bits (71), Expect = 0.17
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 27/141 (19%)
Query: 20 PIGVLLVI----FESRPDSL---PQVAALALASANGLLLKGGKEAFHSNKALMDVVKEAL 72
P GV +I + P +L P + A+ N ++K + ++ + ++ EA
Sbjct: 130 PYGVTYIIGPFNY---PVNLTLTPLIGAII--GGNTCIIKPSETTPETSAVIEKIIAEAF 184
Query: 73 ASVGAQDAISLVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQK-SQH-IPV---LG 126
A + ++++ R+E S LL D I GS ++ + + Q ++H PV LG
Sbjct: 185 A----PEYVAVIQGGRDENSHLL--SLPFDFIFFTGSPNVGKVVMQAAAKHLTPVVLELG 238
Query: 127 HAEGICHVYVDKDADIRKAIK 147
G C + V DAD+ + +
Sbjct: 239 ---GKCPLIVLPDADLDQTVN 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.32
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 32/138 (23%)
Query: 61 NKALMDVVKEALASVGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS- 119
K + D + A + + D S+ T +E+ LL K++D DL R + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRP----QDLPREVLTTNP 327
Query: 120 QHIPVLGHA--EGICHV----YVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHF 173
+ + ++ + +G+ +V+ D + I+ ++ L +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIES-------------SLNVL--EPAEY 371
Query: 174 QGSFFTDVCKMFRDEGVN 191
+ F D +F +
Sbjct: 372 RKMF--DRLSVFP-PSAH 386
Score = 26.7 bits (58), Expect = 5.5
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 59 HSNKALMDVVKEA----LASVGAQDAISLVSTREEISDLLSM---EKHIDLIIPRGSSDL 111
+ K ++ V ++A QD + ++EEI ++ +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-----WT 70
Query: 112 VRSIQQKSQ 120
+ S +Q+
Sbjct: 71 LLS-KQEEM 78
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 29.4 bits (67), Expect = 0.77
Identities = 4/42 (9%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 80 AISLVSTREEISDLLSMEKHIDLIIPRG---SSDLVRSIQQK 118
+I+ V ++ ++ +++++ I R + + + +
Sbjct: 463 SINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKN 504
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein
structure initiative; HET: SO4 GOL; 1.49A {Clostridium
acetobutylicum atcc 824}
Length = 196
Score = 28.2 bits (63), Expect = 1.4
Identities = 13/132 (9%), Positives = 34/132 (25%), Gaps = 37/132 (28%)
Query: 61 NKALMDVVKEALASVGAQDAISLVSTREEISDLLSMEKHIDLIIPRGSS----------- 109
N+ L+++ + S ++ +D II RG++
Sbjct: 13 NENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIP 72
Query: 110 ---------DLVRSIQ---QKSQHIPVLGHAE--------------GICHVYVDKDADIR 143
D +R++ + + ++ + I + +I
Sbjct: 73 SISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEIT 132
Query: 144 KAIKIARDSKCD 155
I +
Sbjct: 133 TLISKVKTENIK 144
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 27.9 bits (63), Expect = 2.0
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 80 AISLVSTREEISDLLSMEKHIDLI----IPRGSSDLVRSIQQK 118
AIS V + + L +++K+ I +P D V I +K
Sbjct: 349 AISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKK 391
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 26.8 bits (60), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 134 VYVDKDADIRKAIKIARDSK 153
V+VD DAD R ++ RD
Sbjct: 129 VFVDADADERFIRRLKRDVL 148
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 27.1 bits (61), Expect = 4.5
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 24/147 (16%)
Query: 19 VPIGVLLVI----FESRPDSLP--QVAALALASANGLLLKGGKEAFHSNKALMDVVKEAL 72
P+G++L I + P +L ++A AL + N + K + S L + EA
Sbjct: 142 EPVGLVLAISPFNY---PVNLAGSKIAP-ALIAGNVIAFKPPTQGSISGLLLAEAFAEA- 196
Query: 73 ASVGA-QDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVL----G 126
G + ++ R EI D + + ++ I GS+ + I + + P++ G
Sbjct: 197 ---GLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGG 253
Query: 127 HAEGICHVYVDKDADIRKAIKIARDSK 153
I V +DAD+ K
Sbjct: 254 KDSAI----VLEDADLELTAKNIIAGA 276
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 26.7 bits (59), Expect = 4.9
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 133 HVYVDKDADIRKAIKIARDSK 153
++VD D+D+R + ++ RD +
Sbjct: 157 RLFVDTDSDVRLSRRVLRDVR 177
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast,
His-TAG, RNA binding protein; 1.80A {Saccharomyces
cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A
3siv_A 1e7k_A
Length = 134
Score = 25.7 bits (56), Expect = 6.7
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 120 QHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKC-------------DYPAACNAMETL 166
H+P+L + + +V+V + +A ++R A + +ETL
Sbjct: 65 LHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETL 124
Query: 167 LIHEDH 172
LI E H
Sbjct: 125 LILEHH 130
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 26.0 bits (58), Expect = 7.0
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 80 AISLVSTREEISDLLSMEKHIDLIIPR 106
AI+ VS + L ++ ++ I
Sbjct: 131 AITFVSDENDAKILNDVQDRFEVNISE 157
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 26.4 bits (59), Expect = 7.0
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 39 AALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGA-QDAISLVSTR-EEISDLLSM 96
A A+A+ N ++ +A L +++ AL +L++ E + D + +
Sbjct: 151 IAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVV 210
Query: 97 EKHIDLIIPRGSSDLVRSIQQKSQHIPVL----GHAEGICHVYVDKDADIRKAIKIARDS 152
+ +++I GSS + I +K+ + G I V KDAD+ KA+
Sbjct: 211 NEKVNMISFTGSSKVGELITKKAGFKKIALELGGVNPNI----VLKDADLNKAVNALIKG 266
Query: 153 K 153
Sbjct: 267 S 267
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A
{Salmonella typhimurium} SCOP: e.32.1.1
Length = 398
Score = 26.1 bits (56), Expect = 8.6
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 77 AQDAISLVSTRE----EISDLL 94
A D IS+ T E EI++ L
Sbjct: 15 ANDGISIAQTTEGALNEINNNL 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.381
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,869,434
Number of extensions: 169062
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 50
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)