RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18173
(191 letters)
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 66.6 bits (162), Expect = 7e-14
Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 9/172 (5%)
Query: 20 PIGVLLVI--FESRPDSLPQVAALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGA 77
P+GV I + AL+ N +++K ++ + + ++KEA G
Sbjct: 152 PVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPG- 210
Query: 78 QDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQ---KSQHIPVLGHAEGICH 133
+++V +S +D + GS+++ + I++ KS V G
Sbjct: 211 --VVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSP 268
Query: 134 VYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTDVCKMF 185
V DAD+ A++ A + C + L E+ F +
Sbjct: 269 CIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERA 320
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 55.0 bits (132), Expect = 6e-10
Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 9/173 (5%)
Query: 20 PIGVLLVI--FESRPDSLPQVAALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGA 77
P+GV I + ALA+ N +++K ++ + + +++KEA G
Sbjct: 152 PVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPG- 210
Query: 78 QDAISLVSTR-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQH---IPVLGHAEGICH 133
+++V ++ + +D + GS+++ R IQ + V G
Sbjct: 211 --VVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSP 268
Query: 134 VYVDKDADIRKAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTDVCKMFR 186
+ DAD+ A++ A + C+ + ++ F +
Sbjct: 269 NIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAK 321
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 53.9 bits (129), Expect = 2e-09
Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 5/150 (3%)
Query: 39 AALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGAQDAISLVSTREEISDLLSMEK 98
A ALA N ++ K + L ++ EA VG +++V E LL
Sbjct: 176 CAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVG---LVNVVQGGAETGSLLCHHP 232
Query: 99 HIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKCDY 156
++ + GS + + + S V G + + KD ++ A++ A +
Sbjct: 233 NVAKVSFTGSVPTGKKVMEMSAKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLT 292
Query: 157 PAACNAMETLLIHEDHFQGSFFTDVCKMFR 186
T + + F +V K +
Sbjct: 293 QGQVCTNGTRVFVQREIMPQFLEEVVKRTK 322
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 46.7 bits (110), Expect = 4e-07
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 7/163 (4%)
Query: 27 IFESRPDSLPQVAALALASANGLLLKGGKEAFHSNKALMDVVKEALASVGAQDAISLVST 86
+ A ALA+ N ++LK + + L ++ K+ ++++
Sbjct: 147 PWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIF----PAGVVNILFG 202
Query: 87 R-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQH--IPVLGHAEGICHVYVDKDADIR 143
R + + D L+ + ++ GS I + G V V DADI
Sbjct: 203 RGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIE 262
Query: 144 KAIKIARDSKCDYPAACNAMETLLIHEDHFQGSFFTDVCKMFR 186
++ R + + + +
Sbjct: 263 AVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVA 305
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 32.2 bits (72), Expect = 0.033
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 96 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIK-IARDS 152
+++ D I+ GS+ + + + + PV G YVDKD D+ A + IA
Sbjct: 175 LKERFDHIMYTGSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGK 234
Query: 153 KCDYPAACNAMETLLIHEDHFQGSFFTDVCKMFRDEG 189
+ C A + +L + G
Sbjct: 235 FMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKDFYG 271
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 27.6 bits (61), Expect = 0.93
Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 9/81 (11%)
Query: 95 SMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARDSKC 154
D+ R S ++ IP + + + D + S
Sbjct: 196 PQFSQTDINFQRVPVVDT-SNPFIARWIPTADESVVVIRFRNPRGIDFPYLTSMIHGSWM 254
Query: 155 DYPAAC--------NAMETLL 167
+ AM+ +L
Sbjct: 255 SRANSIVVPGNKLDLAMQLIL 275
Score = 24.5 bits (53), Expect = 8.1
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 133 HVYVDKDADIRKAIKIARDSK 153
+ V ++ KI RD
Sbjct: 150 KIGVVPVINLEWIQKIHRDRA 170
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 26.8 bits (58), Expect = 1.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 25 LVIFESRPDSLPQVAALALASANGLLLK 52
+ +F +RPD+L L LA + L L+
Sbjct: 18 IPVFTTRPDTLFGATFLVLAPEHPLTLE 45
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 27.2 bits (59), Expect = 1.6
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 55 KEAFHSNKALMDVVKEALASVGAQDAISLVSTREEISDLLSME---KHIDLIIPR 106
+ ++S K ++ + E + + + T+EE+ +L + KH+D I R
Sbjct: 379 LKTWNSEKHFLEYLLE-------DEEVKKLVTKEELEELFDISYYLKHVDHIFER 426
>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein,
PGRP-S {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 25.9 bits (56), Expect = 2.3
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 108 SSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADI 142
R++Q H+ LG + + + +D +
Sbjct: 44 CQQQARNVQ--HYHMKTLGWCDVGYNFLIGEDGLV 76
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium
[TaxId: 90371]}
Length = 395
Score = 26.6 bits (57), Expect = 2.4
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 77 AQDAISLVSTRE----EISDLL 94
A D IS+ T E EI++ L
Sbjct: 12 ANDGISIAQTTEGALNEINNNL 33
>d2f2la1 d.118.1.1 (A:355-520) Peptidoglycan-recognition protein-LC
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 166
Score = 25.5 bits (55), Expect = 3.3
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 108 SSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADI 142
VR +Q + I + + + D ++
Sbjct: 42 CVLRVRLLQ--TYDIESSQKCDIAYNFLIGGDGNV 74
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 25.4 bits (54), Expect = 5.9
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 55 KEAFHSNKALMDVVKEALASVGAQDAISLVSTREEISDLLSMEKHI 100
K A K L D++ + D + ++ ++ E ++
Sbjct: 392 KTAVAEQKHLKDIISQV-------DEVKQYFNPSQLDEIFKPESYL 430
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.381
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 662,102
Number of extensions: 27907
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 18
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)