BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18174
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HZM|A Chain A, Structure Of Erk2 Binding Domain Of Mapk Phosphatase
Mkp-3: Structural Insights Into Mkp-3 Activation By Erk2
Length = 154
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 14 ELCVSKS--WLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIE 71
E+ +SK+ WL ++L RL+++DCR Y SHI A+N +IP IMLRRL G +
Sbjct: 13 EMAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLP 72
Query: 72 LLSTIKCRELKEKIMNAYKDSLFVVYGDS 100
+ + E +++ V+Y +S
Sbjct: 73 VRALFTRGEDRDRFTRRCGTDTVVLYDES 101
>pdb|3TG1|B Chain B, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 158
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 34 IILDCRSSNEYTESHIRHAVNFS-IPSIMLRRLAAGKIELLSTIKCRELKEKIMNAYKDS 92
+I+DCR EY +SHI+ AV+ + I RRL GKI +L I CRE K+ +
Sbjct: 36 VIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKE 95
Query: 93 LFV 95
+ V
Sbjct: 96 IIV 98
>pdb|2OUC|A Chain A, Crystal Structure Of The Map Kinase Binding Domain Of
Mkp5
pdb|2OUC|B Chain B, Crystal Structure Of The Map Kinase Binding Domain Of
Mkp5
Length = 142
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 34 IILDCRSSNEYTESHIRHAVNFS-IPSIMLRRLAAGKIELLSTIKCRELKEKIMNAYKDS 92
+I+DCR EY +SHI+ AV+ + I RRL GKI +L I CRE K+ +
Sbjct: 26 VIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKE 85
Query: 93 LFV 95
+ V
Sbjct: 86 IIV 88
>pdb|3TG3|A Chain A, Crystal Structure Of The Mapk Binding Domain Of Mkp7
pdb|3TG3|B Chain B, Crystal Structure Of The Mapk Binding Domain Of Mkp7
pdb|3TG3|C Chain C, Crystal Structure Of The Mapk Binding Domain Of Mkp7
pdb|3TG3|D Chain D, Crystal Structure Of The Mapk Binding Domain Of Mkp7
Length = 142
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 22 LLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKI 70
L+ L S +++++D R EY SHI A+N + +M RRL K+
Sbjct: 11 LVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKV 59
>pdb|2VSW|A Chain A, The Structure Of The Rhodanese Domain Of The Human Dual
Specificity Phosphatase 16
pdb|2VSW|B Chain B, The Structure Of The Rhodanese Domain Of The Human Dual
Specificity Phosphatase 16
Length = 153
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 22 LLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKI 70
L+ L S +++++D R EY SHI A+N + +M RRL K+
Sbjct: 11 LVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKV 59
>pdb|2IFD|A Chain A, Crystal Structure Of A Remote Binding Site Mutant,
R492l, Of Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 RLIILDCRSSNEYTESHIRHAVNFSI 57
+ +I+DCR EY HI+ AVN +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|1YM9|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfinic
Form
pdb|1YMD|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfonic
Form
pdb|1YML|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfenic
Form
Length = 175
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 RLIILDCRSSNEYTESHIRHAVNFSI 57
+ +I+DCR EY HI+ AVN +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 30.4 bits (67), Expect = 0.34, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 39 RSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKCRELKEKIMNAYKDSLFVVYG 98
R ++Y A++ +IP + I LST+K ++LKEKI N D L YG
Sbjct: 462 RGIDQYAFRGFAQALD-TIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLG--YG 518
Query: 99 DSCMSEVEVRD 109
+ M E+ V D
Sbjct: 519 SNDMKELFVVD 529
>pdb|1YMK|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain In The Apo Form
pdb|1YS0|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Disulfide
Form
Length = 175
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 RLIILDCRSSNEYTESHIRHAVNFSI 57
+ +I+DCR EY HI+ AVN +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|2IFV|A Chain A, Crystal Structure Of An Active Site Mutant, C473d, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 RLIILDCRSSNEYTESHIRHAVNFSI 57
+ +I+DCR EY HI+ AVN +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|2A2K|A Chain A, Crystal Structure Of An Active Site Mutant, C473s, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 RLIILDCRSSNEYTESHIRHAVNFSI 57
+ +I+DCR EY HI+ AVN +
Sbjct: 45 KFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|1CWT|A Chain A, Human Cdc25b Catalytic Domain With Methyl Mercury
Length = 178
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 RLIILDCRSSNEYTESHIRHAVNFSI 57
+ +I+DCR EY HI+ AVN +
Sbjct: 47 KFVIVDCRYPYEYEGGHIKTAVNLPL 72
>pdb|2UZQ|A Chain A, Protein Phosphatase, New Crystal Form
pdb|2UZQ|B Chain B, Protein Phosphatase, New Crystal Form
pdb|2UZQ|C Chain C, Protein Phosphatase, New Crystal Form
pdb|2UZQ|D Chain D, Protein Phosphatase, New Crystal Form
pdb|2UZQ|E Chain E, Protein Phosphatase, New Crystal Form
pdb|2UZQ|F Chain F, Protein Phosphatase, New Crystal Form
Length = 203
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 RLIILDCRSSNEYTESHIRHAVNFSI 57
+ +I+DCR EY HI+ AVN +
Sbjct: 57 KFVIVDCRYPYEYEGGHIKTAVNLPL 82
>pdb|1C25|A Chain A, Human Cdc25a Catalytic Domain
Length = 161
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 33 LIILDCRSSNEYTESHIRHAVNFSI 57
+I+DCR EY HI+ AVN +
Sbjct: 45 FVIIDCRYPYEYEGGHIKGAVNLHM 69
>pdb|1QB0|A Chain A, Human Cdc25b Catalytic Domain
pdb|1CWS|A Chain A, Human Cdc25b Catalytic Domain With Tungstate
pdb|1CWR|A Chain A, Human Cdc25b Catalytic Domain Without Ion In Catalytic
Site
Length = 211
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 RLIILDCRSSNEYTESHIRHAVNFSI 57
+ +I+DCR EY HI+ AVN +
Sbjct: 65 KFVIVDCRYPYEYEGGHIKTAVNLPL 90
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative
AtpGTP BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative
AtpGTP BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 32 RLIILDCRSSNEYTESHIRHAVN 54
++I +D R+ EY E HI +A+N
Sbjct: 17 KVIFVDVRTEGEYEEDHILNAIN 39
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPS 59
L + RS S +++ ++ S+++H +NF +PS
Sbjct: 319 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS 355
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPS 59
L + RS S +++ ++ S+++H +NF +PS
Sbjct: 89 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS 125
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 74 STIKCR-ELKEKIMNAYKDSLFVVYGD 99
+T+K R EL E ++++YKD L YGD
Sbjct: 440 NTVKVRAELPEGVISSYKDELQRKYGD 466
>pdb|2ZAG|A Chain A, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|B Chain B, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|C Chain C, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|D Chain D, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
Length = 497
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 74 STIKCR-ELKEKIMNAYKDSLFVVYGD 99
+T+K R EL E ++++YKD L YGD
Sbjct: 440 NTVKVRAELPEGVISSYKDELQRKYGD 466
>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta
Length = 919
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 66 AAGKIELLSTIKCRELKEKIMNAYKDSLFVVYGDS 100
A G+ +L T + K I N YK VVYGD+
Sbjct: 663 AYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDT 697
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,848,724
Number of Sequences: 62578
Number of extensions: 130977
Number of successful extensions: 294
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 21
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)