RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18174
(144 letters)
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo
sapiens} SCOP: c.46.1.1
Length = 154
Score = 87.9 bits (217), Expect = 3e-23
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 11 TTLELCVSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKI 70
+ + + + +WL ++L RL+++DCR Y SHI A+N +IP IMLRRL G +
Sbjct: 12 SEMAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNL 71
Query: 71 ELLSTIKCRELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQ 130
+ + E +++ V+Y +S + +L K+L+
Sbjct: 72 PVRALFTRGEDRDRFTRRCGTDTVVLYDESS-------SDWNENTGGESLLGLLLKKLKD 124
Query: 131 DGCQVVCL 138
+GC+ L
Sbjct: 125 EGCRAFYL 132
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like
domain, docking interaction, transfera hydrolase
complex; 2.71A {Homo sapiens}
Length = 158
Score = 76.7 bits (188), Expect = 7e-19
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 16 CVSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPS-IMLRRLAAGKIELLS 74
K + +I+DCR EY +SHI+ AV+ + I RRL GKI +L
Sbjct: 18 LAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLD 77
Query: 75 TIKCRELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQ 134
I CRE K+ + + V ++ S ++++ + L+++G +
Sbjct: 78 LISCREGKDSFKRIFSKEIIVYDENTNEPS---------RVMPSQPLHIVLESLKREGKE 128
Query: 135 VVCL 138
+ L
Sbjct: 129 PLVL 132
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase;
2.20A {Homo sapiens}
Length = 142
Score = 75.8 bits (186), Expect = 1e-18
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 21 WLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPS-IMLRRLAAGKIELLSTIKCR 79
+ +I+DCR EY +SHI+ AV+ + I RRL GKI +L I CR
Sbjct: 13 TKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCR 72
Query: 80 ELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQVVCL 138
E K+ + + V ++ S ++++ + L+++G + + L
Sbjct: 73 EGKDSFKRIFSKEIIVYDENTNEPS---------RVMPSQPLHIVLESLKREGKEPLVL 122
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual
specificity phosphatase, nucleus, cytoplasm, rhodanese
domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Length = 153
Score = 71.4 bits (174), Expect = 9e-17
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTI 76
+ L+ L S +++++D R EY SHI A+N + +M RRL K+ + I
Sbjct: 6 IVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELI 65
Query: 77 KCRELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQVV 136
+ K K+ + V S ++ + VL +L++ V
Sbjct: 66 QH-SAKHKVDIDCSQKVVVYDQSSQDVA---------SLSSDCFLTVLLGKLEKSFNSVH 115
Query: 137 CL 138
L
Sbjct: 116 LL 117
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4
Length = 157
Score = 59.0 bits (142), Expect = 5e-12
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRR-LAAGKIELLST 75
++ L + LII+D R +Y +S I H+++ +P + + A IE
Sbjct: 17 ITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLS--VPEEAISPGVTASWIEAHLP 74
Query: 76 IKCRELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQV 135
++ +K + +VV D S ++ T+ L L + +
Sbjct: 75 DDSKDTWKKR----GNVEYVVLLDWFSSAKDL--------QIGTTLRSLKDALFKWESKT 122
Query: 136 V 136
V
Sbjct: 123 V 123
>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex,
E3 ligase, protein ubiquitination, hydrolase, protease,
UBL conjugation pathway; 2.30A {Homo sapiens} SCOP:
c.46.1.4
Length = 157
Score = 57.8 bits (139), Expect = 1e-11
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRR-LAAGKIELLST 75
++ L + LII+D R +Y +S I H+++ +P + + A IE
Sbjct: 22 ITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLS--VPEEAISPGVTASWIEAHLP 79
Query: 76 IKCRELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQV 135
++ +K N V+ D S ++ T+ L L + +
Sbjct: 80 DDSKDTWKKRGNV---EYVVLL-DWFSSAKDL--------QIGTTLRSLKDALFKWESKT 127
Query: 136 V 136
V
Sbjct: 128 V 128
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism,
thiosulfate:cyanide sulfurtransferase; 1.8A
{Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB:
1h4k_X 1h4m_X
Length = 271
Score = 50.6 bits (122), Expect = 2e-08
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 9 EFTTLELCVSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRR 64
+F +L L + + L L S P LI++D S+ Y E HI A L +
Sbjct: 3 DFASLPLVIEPADLQARL-SAP-ELILVDLTSAARYAEGHIPGARFVDPKRTQLGQ 56
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 44.6 bits (105), Expect = 1e-06
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 21/112 (18%)
Query: 19 KSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKC 78
S L + + +I+DCR EY HI+ AVN + + L
Sbjct: 31 ASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLK----------- 79
Query: 79 RELKEKIMNAYKDSLFVVY-------GDSCMSEVEVRDREKHCYTASDTMNV 123
K + K + V + G V RDR + Y +
Sbjct: 80 ---KPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPEL 128
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains;
HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A*
3ipp_A
Length = 423
Score = 44.3 bits (105), Expect = 3e-06
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 28/96 (29%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSSNEYT---------ESHIRHAVNFSIPSIMLRRLAA 67
++K L +L +D R S Y H A+N S
Sbjct: 6 LAKPLTLDQL--QQQNGKAIDTRPSAFYNGWPQTLNGPSGHELAALNLSASW-------- 55
Query: 68 GKIELLSTIKCRELKEKIMNAY---KDSLFVVYGDS 100
++ +ST + + + D+ +YG+
Sbjct: 56 --LDKMSTEQLNAW----IKQHNLKTDAPVALYGND 85
Score = 40.1 bits (94), Expect = 8e-05
Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 19/114 (16%)
Query: 1 MKMPAGEEEFTTLELCVSKSWLLQELRS------DPSRLIILDCR--SSNEYTESHIRHA 52
+ P+ ++ E V WL + +++ + Y SHI A
Sbjct: 110 LSEPSRLQKLPHFEQLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGA 169
Query: 53 VNFSIPSIMLRRLAAGKIELLSTIKCRELKEKIMNAY---KDSLFVVYGDSCMS 103
+ + +S E + ++ + D+ ++YG +
Sbjct: 170 DYIDTNEV----ESEPLWNKVS----DEQLKAMLAKHGIRHDTTVILYGRDVYA 215
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious
disease, transferase structural genomics; 2.10A
{Mycobacterium tuberculosis} PDB: 3p3a_A
Length = 318
Score = 43.4 bits (103), Expect = 5e-06
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSS-NEYTESHIRHAVNFSI 57
V+ WL + P L I++ Y HI AV
Sbjct: 42 VTADWLSAHM-GAP-GLAIVESDEDVLLYDVGHIPGAVKIDW 81
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT
initiative, RSGI, structural genomics, transferase;
1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Length = 285
Score = 43.0 bits (102), Expect = 7e-06
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSS-NEYTESHIRHAVNFSI 57
VS W+ + L DP ++ +L+ Y HI A
Sbjct: 10 VSTDWVQEHL-EDP-KVRVLEVDEDILLYDTGHIPGAQKIDW 49
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate
trapping, active site mutant, hydrolase; 1.52A {Homo
sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A
1cwt_A 2ifd_A
Length = 175
Score = 42.2 bits (99), Expect = 9e-06
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 19 KSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIK 77
+ L + + + +I+DCR EY HI+ AVN + L I S K
Sbjct: 32 VALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDK 90
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics,
NPPSFA, national Pro protein structural and functional
analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Length = 230
Score = 42.6 bits (101), Expect = 9e-06
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 29 DPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKCRELKEKIMNA 88
P +++D R Y H+ A + + + LR + EL + ++
Sbjct: 3 LPEDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRL--REEAELKAL---EGGLTELFQT 57
Query: 89 YK-DSLFVVYGDS 100
S V+Y +
Sbjct: 58 LGLRSPVVLYDEG 70
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural
genomics consortium, SGC, Al alpha sandwich, kinase,
cytosol, hydrolase; 2.63A {Homo sapiens}
Length = 216
Score = 42.4 bits (99), Expect = 1e-05
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 19 KSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKC 78
+ L + + + ++DCR EY HI+ A+N + L I
Sbjct: 65 AALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFF------LKKPIVP 118
Query: 79 RELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNV 123
+ +++I+ + G + DR + Y A +
Sbjct: 119 LDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPEL 163
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.50A {Bacillus halodurans} PDB:
3o3w_A
Length = 144
Score = 41.3 bits (97), Expect = 1e-05
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 22 LLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLA 66
L +++ +I++D R + Y E HI A++ I
Sbjct: 23 LSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTK 67
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell
cycle phosphatase, dual specificity protein phosphatase;
1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A
2uzq_A
Length = 211
Score = 41.6 bits (97), Expect = 2e-05
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 19 KSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIK 77
+ L + + + +I+DCR EY HI+ AVN + L I S K
Sbjct: 52 VALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDK 110
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase,
structural genomics, PSI, structure initiative; 1.90A
{Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Length = 277
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSS-NEYTESHIRHAVNFSIPSIM---LRRLAAGKIEL 72
VS W L P +++ ++ + Y HI A+ + + ++R +
Sbjct: 8 VSADWAESNL-HAP-KVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQF 65
Query: 73 LSTIKCRELKEKIMNAY---KDSLFVVYGDS 100
K+++ + ++YG +
Sbjct: 66 ----------SKLLSERGIANEDTVILYGGN 86
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure,
atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A
{Saccharomyces cerevisiae}
Length = 139
Score = 39.4 bits (92), Expect = 8e-05
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 22 LLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIP-SIMLRRLAAGKIELLSTIKCRE 80
+ + + ++++D R +EY+ HI ++N +P A +E I +
Sbjct: 30 MKRIVGKHDPNVVLVDVREPSEYSIVHIPASIN--VPYRSHPDAFALDPLEFEKQIGIPK 87
Query: 81 LKEKIMNAYKDSLFVVYGDSCMS 103
+ Y C S
Sbjct: 88 PD-------SAKELIFY---CAS 100
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4,
structural genomics, ubiquitin biology, structural
genomics consortium, SGC; 1.25A {Homo sapiens}
Length = 127
Score = 38.9 bits (91), Expect = 8e-05
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKCRELK 82
+ L + ++LD R E + HA++ IP L+ L E L +K +
Sbjct: 8 YKRLLDSGAFHLLLDVRPQVEVDICRLPHALH--IP---LKHLERRDAESLKLLKEAIWE 62
Query: 83 EKIMNAY-KDSLFVVY 97
EK V
Sbjct: 63 EKQGTQEGAAVPIYVI 78
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle,
phosphorylation, plant, hydrolase; NMR {Arabidopsis
thaliana} SCOP: c.46.1.1
Length = 152
Score = 38.8 bits (90), Expect = 1e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIML 62
++ + LL R + I+D R + HI +++ S
Sbjct: 30 ITSTQLLPLHRRP--NIAIIDVRDEERNYDGHIAGSLH--YASGSF 71
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A
{Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Length = 280
Score = 38.7 bits (91), Expect = 2e-04
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 17 VSKSWLLQELRSDPSRLIILDCR----------SSNEYTESHIRHAVNFSI 57
V WL + + DP + I+D R + EY HI AV F I
Sbjct: 6 VGADWLAEHI-DDP-EIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDI 54
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural
genomics, protein structure initiative, northeast
structural genomics consortium; 2.26A {Nostoc SP} PDB:
2kl3_A
Length = 141
Score = 37.8 bits (88), Expect = 3e-04
Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 20/81 (24%)
Query: 22 LLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKCREL 81
L L ILD R + Y + HI A+ +P + L L
Sbjct: 7 LKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMA--MP---IEDLVDRASSSLE------- 54
Query: 82 KEKIMNAYKDSLFVVYGDSCM 102
K VYG
Sbjct: 55 --------KSRDIYVYGAGDE 67
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide
detoxification, structural genomics, PSI, protein
structure initiative; 1.90A {Pseudomonas aeruginosa}
SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Length = 539
Score = 38.9 bits (90), Expect = 3e-04
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIP 58
++ L +LD R + + ++H A N +P
Sbjct: 14 IRAALLARRELALLDVREEDPFAQAHPLFAAN--LP 47
Score = 35.9 bits (82), Expect = 0.003
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
+Q L + +ILD R +EY I ++ ++LR
Sbjct: 137 VQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLR 177
Score = 35.5 bits (81), Expect = 0.004
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
L + +P +LD +S Y + HI A +
Sbjct: 384 LADWLGEPG-TRVLDFTASANYAKRHIPGAAWVLRSQLKQA 423
Score = 32.8 bits (74), Expect = 0.033
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 23 LQELRSDPSR-LIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
L + + + R +LD R+ EY H+ + + ++
Sbjct: 272 LAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQE 313
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp,
NSR437I, NESG, structural genomics, PSI-2, protein
structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Length = 106
Score = 36.8 bits (86), Expect = 4e-04
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 22 LLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELL 73
L L ILD R + Y + HI A+ +P + L L
Sbjct: 3 LKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMA--MP---IEDLVDRASSSL 49
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 18 SKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR-RLA 66
+ ++ + ++LD R+ E + AVN IP LR R+
Sbjct: 472 ATPIHFDQIDNLSEDQLLLDVRNPGELQNGGLEGAVN--IPVDELRDRMH 519
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics,
structural genomics consortium, SGC, RH fold; 2.50A
{Homo sapiens}
Length = 302
Score = 37.6 bits (88), Expect = 5e-04
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 1 MKMPAGEEEFTTLELCVSKSWLLQELRS--DPSRLIILDCR---------SSNEYTESHI 49
+ + F ++ VS W+ + LR+ L +LD + E+ E HI
Sbjct: 11 VDLGTENLYFQSM---VSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHI 67
Query: 50 RHAVNFSI 57
A F I
Sbjct: 68 PGAAFFDI 75
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase;
1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A
1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Length = 296
Score = 37.6 bits (88), Expect = 5e-04
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 10 FTTLELCVSKSWLLQELRSDPS--RLIILDCRSS--------NEYTESHIRHAVNFSI 57
+ L VS WL + +R+ L +LD EY E H+ A F I
Sbjct: 6 YRAL---VSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDI 60
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Length = 124
Score = 36.2 bits (84), Expect = 8e-04
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 3 MPAGEEEF--TTLELCVSKSWLLQELRSDPSRLIILDCRSS-NEYTESHIRHAVNFSIP 58
M + E T L L + +L ++++ + ++LD R++ + + I+ A+ +P
Sbjct: 1 MNDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIA--MP 57
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus saprophyticus subsp}
Length = 100
Score = 35.6 bits (83), Expect = 8e-04
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
L+E D + + I+D R+ E I A + SI
Sbjct: 9 LKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPDN 49
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich,
structural genomics; 2.00A {Staphylococcus aureus
subsp} PDB: 3iwh_A 3mzz_A
Length = 103
Score = 35.3 bits (82), Expect = 0.001
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
L+ + + I+D R+ E +I +A + +I
Sbjct: 9 LKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDN 49
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.003
Identities = 21/188 (11%), Positives = 53/188 (28%), Gaps = 71/188 (37%)
Query: 8 EEFTTLELCVSKSWLLQELRS---DPSRLIILDCRSSNEYTESHIR-HAVNFSIPSIMLR 63
++F L ++ +L+ +++ PS + Y E R + N +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSM-------MTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 64 RLAAGKIELLSTIKCRELKEKIMNAYKDSLFVVYGD-----SCMSEVEVRDRE------- 111
R ++ +L++ ++ ++ G + ++ +
Sbjct: 133 R-----LQPY-----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 112 -------KHCYTASDTMNVLTK---RLQQDGCQVV------------------------- 136
K+C + + +L K ++ +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 137 ---CLLVL 141
CLLVL
Sbjct: 243 YENCLLVL 250
Score = 27.5 bits (60), Expect = 2.0
Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 36/122 (29%)
Query: 19 KSWL--LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTI 76
++ L L + + + L++L N F+ +
Sbjct: 231 QAELRRLLKSKPYENCLLVLL----NVQNAKAWNA---FN-------------------L 264
Query: 77 KCRELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQVV 136
C+ L + +K + + + + + T + ++L K L C+
Sbjct: 265 SCKIL---LTTRFKQVTDFLSAAT-TTHISLDHHSM-TLTPDEVKSLLLKYL---DCRPQ 316
Query: 137 CL 138
L
Sbjct: 317 DL 318
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl
isomerase, catalytic triad, serine protease, leishmania
pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP:
c.46.1.2 c.46.1.2 d.26.1.3
Length = 373
Score = 35.1 bits (81), Expect = 0.004
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 12/49 (24%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSS--------NEYTESHIRHAVNFSI 57
+ S + L + I+DCR S +Y + H++ A+ +
Sbjct: 16 LDPSEVADHL----AEYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADV 60
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.40A {Thermoplasma volcanium GSS1}
Length = 108
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 24 QELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIP 58
+L + +LD R E I +++N IP
Sbjct: 9 ADLYENIKAYTVLDVREPFELIFGSIANSIN--IP 41
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 34.9 bits (81), Expect = 0.006
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 18 SKSWLLQELRS-DPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR-RLA 66
+ E+ + ++D R NE + I+ ++N IP LR RL
Sbjct: 488 VDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSIN--IPLDELRDRLE 536
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics,
unknown function, PSI-2, PR structure initiative; NMR
{Helicobacter pylori}
Length = 110
Score = 33.1 bits (76), Expect = 0.008
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 27 RSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
+ + I++D R +EY E H+ +A S+
Sbjct: 11 EVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKL 47
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP
binding protein, PSI, MCSG, STR genomics, protein
structure initiative; HET: PGE; 1.76A {Clostridium
difficile}
Length = 134
Score = 33.1 bits (75), Expect = 0.011
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 34 IILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKCRELKEKIMNAYKDSL 93
I +D R+ EY E HI +A+N + ++ + + ++ +
Sbjct: 19 IFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDI 78
Query: 94 FVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQVVCL 138
++ + ++ + +C + L G V L
Sbjct: 79 YLQAAELALNYDNIV---IYCARGGMRSGSIVNLLSSLGVNVYQL 120
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 33.8 bits (77), Expect = 0.011
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 33 LIILDCRSSNEYTESHIRHAVNFSIPSI 60
L +LD R+ +E+ H+ A + + +
Sbjct: 390 LWLLDVRNVDEWAGGHLPQAHHIPLSKL 417
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase,
rhodanese-like family, structural genomics, PSI-2,
protein structure initiative; HET: MSE; 1.80A
{Saccharomyces cerevisiae} PDB: 3fs5_A*
Length = 169
Score = 32.8 bits (74), Expect = 0.018
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 19 KSWLLQELRSDPSR-LIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIK 77
W+ + + ++D R S +Y HI+ + L++ EL
Sbjct: 39 HRWMQEGHTTTLREPFQVVDVRGS-DYMGGHIKDGWH--YAYSRLKQDPEYLREL----- 90
Query: 78 CRELKEKIMNAYKDSLFVVYGDSC 101
L EK + + +
Sbjct: 91 KHRLLEKQADGRGALNVIFHCMLS 114
>2jtq_A Phage shock protein E; solution structure rhodanese, stress
response, transferase; NMR {Escherichia coli} PDB:
2jtr_A 2jts_A
Length = 85
Score = 31.8 bits (73), Expect = 0.018
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 35 ILDCRSSNEYTESHIRHAVNFSIP 58
+D R +Y + H++ A+N IP
Sbjct: 4 WIDVRVPEQYQQEHVQGAIN--IP 25
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 33.1 bits (75), Expect = 0.020
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 29 DPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
+ ILD R+ NE+ H+ AV+ ++
Sbjct: 384 TGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLET 418
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 32.4 bits (74), Expect = 0.020
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 34 IILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKCRELKEKIMNAYKDSL 93
LD R+ E+++ H A+N +P A + + L++ + +
Sbjct: 34 RYLDVRTPEEFSQGHACGAIN--VP---YMNRGASGMSKNTD----FLEQVSSHFGQSDN 84
Query: 94 FVVYGDSCMS 103
+V C S
Sbjct: 85 IIVG---CQS 91
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 32.3 bits (73), Expect = 0.022
Identities = 7/77 (9%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 24 QELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKCRELKE 83
+ L +P R +++D R E+ + + + + + + + +
Sbjct: 14 EMLSDNP-RAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRI 72
Query: 84 KIMNAYKDSLFVVYGDS 100
+ + S
Sbjct: 73 PADADQHERPVIFLCRS 89
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol
metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB:
1gn0_A
Length = 108
Score = 31.5 bits (72), Expect = 0.035
Identities = 4/41 (9%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
+ + +++D R + H A + + ++
Sbjct: 12 AHQKLQEKE-AVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF 51
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase,
CDC25 phosphatase, rhodanese, C-MYC epitope,
oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Length = 152
Score = 31.6 bits (71), Expect = 0.051
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 17 VSKSWLLQELRSD--PSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRL 65
+ L++ L + + ++DCR S + I +++N S
Sbjct: 7 IKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEMY 56
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 94
Score = 29.5 bits (67), Expect = 0.13
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 24 QELRS-DPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIEL 72
+EL + ++++D R ++ + A +P L ++ G+ L
Sbjct: 7 EELPALLEEGVLVVDVRPADRRSTPLPFAAEW--VP---LEKIQKGEHGL 51
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 29.8 bits (67), Expect = 0.29
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 55 FSIPSIMLRRLAAGKIELLSTIKC--RELKEKIMNA-----YKDSLFVVYGD 99
+ P + + + + + +K L A + D++F+V D
Sbjct: 254 YEYPEGKIEQYDSEHMTRNNAVKYSDYALGTFFDKAKKSSYWDDTIFIVIAD 305
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase,
homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Length = 137
Score = 28.8 bits (65), Expect = 0.37
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVN-FSIP 58
+L + + ++D R +E N +
Sbjct: 30 AYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMS 66
>1vee_A Proline-rich protein family; hypothetical protein, structural
genomics, rhodanese domain, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} PDB: 2dcq_A
Length = 134
Score = 28.4 bits (63), Expect = 0.51
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 22 LLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIML 62
+L +D + +LD R++ ++ + + ++
Sbjct: 12 AYTKLGTDDN-AQLLDIRATADFRQVGSPNIKGLGKKAVST 51
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics,
rohopseudom palustris, PSI-2, protein structure
initiative; 1.20A {Rhodopseudomonas palustris}
Length = 139
Score = 28.0 bits (63), Expect = 0.74
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 22 LLQELRSDPSRLIILDCRSSNEYTES-HIRHAVNFSIPSIML 62
+ +S S ++I+D R E I + + ML
Sbjct: 29 AIALHKSGASDVVIVDIRDPREIERDGKIPGSFS--CTRGML 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.88
Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 46 ESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKCRELKEKIMNAYKDSLFVVYGDSCMSEV 105
++H + FSI I+ K + ++E Y +F D +
Sbjct: 1650 DNHFKDTYGFSILDIV-INNPVNLTIHFGGEKGKRIREN----YSAMIFETIVDGKLKTE 1704
Query: 106 EV-----RDREKHCYTAS-DTMNVLTKRLQQDGCQVVCLLVLKY 143
++ + + + ++ T+ Q L +++
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLS-ATQFTQ------PALTLMEK 1741
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA
replication, DNA-BI DNA-directed DNA polymerase,
exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae}
Length = 919
Score = 28.0 bits (62), Expect = 1.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 68 GKIELLSTIKCRELKEKIMNAYKDSLFVVYG--DSCMSEVEVRDREK 112
G+ +L T + K I N YK VVYG DS M + D ++
Sbjct: 665 GRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKE 711
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 26.6 bits (58), Expect = 2.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 21 WLLQELRSDPSRLIILDCRSSN 42
L Q+L RL+++DC S
Sbjct: 173 MLFQDLEKKKERLVVVDCESER 194
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Length = 140
Score = 25.4 bits (55), Expect = 5.3
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 102 MSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQV--VCLLVLKY 143
+ E+ R H + + KRL V L ++KY
Sbjct: 32 LEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKY 75
>2kko_A Possible transcriptional regulatory protein (possibly
ARSR-family); NESG, DNA-binding, transcription
regulation, WHTH, homodimer; NMR {Mycobacterium bovis}
PDB: 3gw2_A
Length = 108
Score = 25.0 bits (55), Expect = 5.8
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 28 SDPSRLIILDCRSSNEYTESHIRHAVNFSIPSI--MLRRL 65
++ RL ILD + E I A ++ + L+ L
Sbjct: 23 ANGRRLQILDLLAQGERAVEAIATATGMNLTTASANLQAL 62
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics,
DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP:
a.4.5.58 PDB: 2cwe_A
Length = 192
Score = 25.5 bits (55), Expect = 6.4
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 28 SDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIM--LRRLA-AGKIELLSTIKCRELKEK 84
+ +R IL + E T S + + + +I + +L AG +E+ T L EK
Sbjct: 18 LEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEK 77
Query: 85 IMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQD 131
D ++ E T D L + +++
Sbjct: 78 YYGRTADVFYI--NLYLGDEELRYIARSRLKTKIDIFKRLGYQFEEN 122
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional
regulation, winged HTH protein, transcription
repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5
PDB: 1r1v_A 2kjb_A 2kjc_A
Length = 106
Score = 24.9 bits (55), Expect = 6.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 28 SDPSRLIILDCRSSNEYTESHIRHAVNFSIPSI 60
D +R+ I++ S +E + HI H +N S ++
Sbjct: 24 GDYNRIRIMELLSVSEASVGHISHQLNLSQSNV 56
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 25.6 bits (57), Expect = 7.4
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 17/63 (26%)
Query: 70 IELLSTIKCRELKEKIMNAYKDS---------------LFVVYGDSCMSEVEVRDREKHC 114
I L + K EL++ I+ D ++ + +SE E + + C
Sbjct: 214 INLEISEK--ELEQTILRMMTDPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGC 271
Query: 115 YTA 117
TA
Sbjct: 272 TTA 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.390
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,110,746
Number of extensions: 111956
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 73
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)