RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18174
(144 letters)
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 76.8 bits (188), Expect = 2e-19
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTI 76
+ +WL ++L RL+++DCR Y SHI A+N +IP IMLRRL G + + +
Sbjct: 18 KTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALF 77
Query: 77 KCRELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNVLTKRLQQDGCQVV 136
E +++ V+Y +S E + +L K+L+ +GC+
Sbjct: 78 TRGEDRDRFTRRCGTDTVVLYDESSSDWNE-------NTGGESLLGLLLKKLKDEGCRAF 130
Query: 137 CL 138
L
Sbjct: 131 YL 132
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase
8, USP8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 45.7 bits (107), Expect = 1e-07
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTI 76
++ L + LII+D R +Y +S I H+++ +I A+ L
Sbjct: 3 ITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHL--- 59
Query: 77 KCRELKEKIMNAYKDSLFVVYGDS 100
+ K+ V+
Sbjct: 60 -PDDSKDTWKKRGNVEYVVLLDWF 82
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
Length = 161
Score = 40.9 bits (95), Expect = 8e-06
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 19 KSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKC 78
S L + + +I+DCR EY HI+ AVN + + L I
Sbjct: 31 ASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDG--- 87
Query: 79 RELKEKIMNAYKDSLFVVYGDSCMSEVEVRDREKHCYTASDTMNV 123
K I+ + + G V RDR + Y +
Sbjct: 88 ---KRVIVVFHCEF-SSERGPRMCRYVRERDRLGNEYPKLHYPEL 128
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 135
Score = 36.2 bits (82), Expect = 4e-04
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 9 EFTTLELCVSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIM 61
+F +L L + + L L + LI++D S+ Y E HI A
Sbjct: 3 DFASLPLVIEPADLQARLSAP--ELILVDLTSAARYAEGHIPGARFVDPKRTQ 53
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 35.9 bits (82), Expect = 5e-04
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 19 KSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLRRLAAGKIELLSTIKC 78
+ L + + + +I+DCR EY HI+ AVN + L I S K
Sbjct: 31 VALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKR 90
Query: 79 R 79
Sbjct: 91 V 91
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase
{Leishmania major [TaxId: 5664]}
Length = 156
Score = 35.1 bits (80), Expect = 0.001
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 13/104 (12%)
Query: 14 ELCVSKSWLLQELRSDPSRLIILDCRSS--------NEYTESHIRHAVNFSIPSIMLRRL 65
++ + S + L + I+DCR S +Y + H++ A+ + + + + +
Sbjct: 7 KVFLDPSEVADHL----AEYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLV 62
Query: 66 AAGKIE-LLSTIKCRELKEKIMNAYKDSLFVVYGDSCMSEVEVR 108
L + + Y D C + R
Sbjct: 63 PTSTARHPLPPCAEFIDWCMANGMAGELPVLCYDDECGAMGGCR 106
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId:
9913]}
Length = 149
Score = 34.1 bits (77), Expect = 0.003
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 10/96 (10%)
Query: 17 VSKSWLLQELRSD--PSRLIILDCRSS--------NEYTESHIRHAVNFSIPSIMLRRLA 66
VS WL + +R+ L +LD EY E H+ A F I +
Sbjct: 10 VSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASP 69
Query: 67 AGKIELLSTIKCRELKEKIMNAYKDSLFVVYGDSCM 102
+ + ++ + D
Sbjct: 70 YEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGS 105
>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 33.3 bits (75), Expect = 0.004
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 14 ELCVSKSWLLQELRSDPSRLIILDCRSS-NEYTESHIRHAVNF 55
E+ VS W+ + L ++ +L+ Y HI A
Sbjct: 6 EVLVSTDWVQEHLEDP--KVRVLEVDEDILLYDTGHIPGAQKI 46
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 136
Score = 33.0 bits (74), Expect = 0.005
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 17 VSKSWLLQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIM 61
S+ +LL L + L I D RS EY + A IP +
Sbjct: 14 ASRDYLLGRLGAA--DLAIWDARSPQEYRGEKVLAAKGGHIPGAV 56
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 31.0 bits (69), Expect = 0.021
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIMLR 63
+Q L + +ILD R +EY I ++ ++LR
Sbjct: 31 VQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLR 71
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 130
Score = 30.3 bits (67), Expect = 0.038
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 23 LQELRSDPSR-LIILDCRSSNEYTESHIRHAVNFSIPSIM 61
L + + + R +LD R+ EY H+ + + ++
Sbjct: 30 LAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLV 69
>d1tq1a_ c.46.1.3 (A:) Thiosulfate
sulfurtransferase/Senescence-associated protein {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 119
Score = 29.8 bits (66), Expect = 0.058
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 34 IILDCRSSNEYTESHIRHAVNF 55
LD R+ E+++ H A+N
Sbjct: 24 RYLDVRTPEEFSQGHACGAINV 45
>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 101
Score = 28.4 bits (62), Expect = 0.14
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIM 61
++ L +LD R + + ++H A N + +
Sbjct: 9 IRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLE 47
>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase
{Leishmania major [TaxId: 5664]}
Length = 139
Score = 28.6 bits (63), Expect = 0.17
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 21 WLLQELRSDPSRLIILDCRSSNEYT-----------ESHIRHAVNFSIPSIM 61
+L+ E+ P + II D RS++ + HI A N S +
Sbjct: 4 YLVDEI---PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHL 52
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA
{Staphylococcus aureus [TaxId: 1280]}
Length = 94
Score = 25.8 bits (57), Expect = 1.0
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 28 SDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIM--LRRLAAGKI 70
D +R+ I++ S +E + HI H +N S ++ L+ L + +
Sbjct: 16 GDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHL 60
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli
[TaxId: 562]}
Length = 108
Score = 25.5 bits (55), Expect = 1.6
Identities = 3/27 (11%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 23 LQELRSDPSRLIILDCRSSNEYTESHI 49
+ + +++D R + H
Sbjct: 12 AHQKLQEKE-AVLVDIRDPQSFAMGHA 37
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria
(Synechococcus), pcc7942 [TaxId: 1129]}
Length = 98
Score = 24.3 bits (53), Expect = 3.9
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 28 SDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIM--LRRLAAGKI 70
+DP+RL +L + +E + A+ S ++ LR L ++
Sbjct: 21 ADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRL 65
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 190
Score = 24.2 bits (52), Expect = 5.7
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 28 SDPSRLIILDCRSSNEYTESHIRHAVNFSIPSIM--LRRL-AAGKIE 71
+ +R IL + E T S + + + +I + +L AG +E
Sbjct: 17 LEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVE 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.390
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 518,968
Number of extensions: 21956
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 20
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.7 bits)