Query psy18175
Match_columns 132
No_of_seqs 177 out of 1057
Neff 8.5
Searched_HMMs 46136
Date Sat Aug 17 00:36:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718|consensus 100.0 1.3E-35 2.9E-40 203.5 10.8 129 1-129 17-161 (198)
2 smart00195 DSPc Dual specifici 100.0 6.9E-32 1.5E-36 182.8 13.6 122 1-122 1-138 (138)
3 KOG1716|consensus 100.0 9.2E-31 2E-35 196.8 12.3 129 1-129 75-222 (285)
4 cd00127 DSPc Dual specificity 100.0 5.4E-30 1.2E-34 173.1 12.5 120 1-120 2-139 (139)
5 PF00782 DSPc: Dual specificit 100.0 4.2E-30 9.1E-35 172.8 11.7 111 12-122 18-133 (133)
6 KOG1717|consensus 100.0 1.4E-30 3.1E-35 190.0 9.8 126 3-128 174-317 (343)
7 PRK12361 hypothetical protein; 99.9 2.5E-26 5.4E-31 185.8 13.4 123 1-123 95-237 (547)
8 PTZ00393 protein tyrosine phos 99.9 1E-24 2.2E-29 158.6 11.9 118 11-130 115-236 (241)
9 PTZ00242 protein tyrosine phos 99.9 8.7E-25 1.9E-29 152.8 10.7 116 10-126 38-161 (166)
10 KOG1719|consensus 99.9 2.4E-24 5.1E-29 146.2 9.3 115 15-129 54-176 (183)
11 COG2453 CDC14 Predicted protei 99.9 8.6E-21 1.9E-25 134.2 12.0 97 28-126 71-168 (180)
12 KOG1720|consensus 99.8 1.8E-20 3.9E-25 133.0 11.3 92 29-121 115-206 (225)
13 smart00404 PTPc_motif Protein 99.6 5.2E-14 1.1E-18 89.9 9.8 87 32-118 5-101 (105)
14 smart00012 PTPc_DSPc Protein t 99.6 5.2E-14 1.1E-18 89.9 9.8 87 32-118 5-101 (105)
15 PF05706 CDKN3: Cyclin-depende 99.6 1.7E-14 3.7E-19 99.9 7.8 69 28-96 99-168 (168)
16 cd00047 PTPc Protein tyrosine 99.5 8.9E-13 1.9E-17 96.1 10.8 91 28-118 126-227 (231)
17 smart00194 PTPc Protein tyrosi 99.4 2.9E-12 6.2E-17 94.9 10.9 90 29-118 155-254 (258)
18 KOG2836|consensus 99.4 5.2E-12 1.1E-16 84.5 9.5 107 11-119 40-152 (173)
19 PRK15375 pathogenicity island 99.3 3.5E-11 7.6E-16 95.7 10.5 93 32-124 423-530 (535)
20 PF03162 Y_phosphatase2: Tyros 99.2 7.5E-11 1.6E-15 82.3 7.8 119 2-124 8-151 (164)
21 PHA02742 protein tyrosine phos 99.2 4E-10 8.6E-15 85.7 11.8 88 30-117 181-289 (303)
22 PHA02740 protein tyrosine phos 99.2 6E-10 1.3E-14 84.6 12.0 90 29-118 175-282 (298)
23 COG5350 Predicted protein tyro 99.2 8.3E-11 1.8E-15 80.2 6.4 83 31-114 56-146 (172)
24 PF00102 Y_phosphatase: Protei 99.1 4.8E-10 1E-14 81.1 9.7 88 31-118 134-231 (235)
25 TIGR01244 conserved hypothetic 99.1 1.7E-09 3.8E-14 73.2 11.4 100 2-107 3-129 (135)
26 KOG2283|consensus 99.1 1.6E-10 3.4E-15 91.3 6.9 101 23-123 66-174 (434)
27 PHA02746 protein tyrosine phos 99.1 1.5E-09 3.2E-14 83.2 12.1 91 29-119 199-309 (323)
28 PHA02747 protein tyrosine phos 99.1 3.7E-09 8E-14 80.7 12.4 88 29-116 181-288 (312)
29 PHA02738 hypothetical protein; 99.0 3.1E-09 6.7E-14 81.4 10.9 88 30-117 177-287 (320)
30 KOG0792|consensus 98.9 5.4E-09 1.2E-13 88.5 9.3 89 30-118 1026-1124(1144)
31 PF14566 PTPlike_phytase: Inos 98.9 2.2E-09 4.7E-14 73.8 5.7 60 26-86 89-148 (149)
32 COG5599 PTP2 Protein tyrosine 98.9 1.4E-08 3E-13 75.1 7.8 98 27-124 180-294 (302)
33 PF04179 Init_tRNA_PT: Initiat 98.7 1.7E-07 3.7E-12 74.7 10.8 93 27-119 336-449 (451)
34 PLN02727 NAD kinase 98.6 1.8E-07 3.9E-12 79.2 7.9 63 28-92 309-371 (986)
35 KOG0790|consensus 98.6 1.9E-07 4.1E-12 73.5 6.5 84 31-117 416-514 (600)
36 KOG0789|consensus 98.5 2.3E-06 5.1E-11 67.1 10.7 89 31-119 263-362 (415)
37 KOG2386|consensus 98.4 1.3E-07 2.9E-12 73.6 3.0 77 48-124 110-186 (393)
38 PF04273 DUF442: Putative phos 98.4 1.3E-06 2.9E-11 57.1 6.9 77 1-82 2-105 (110)
39 COG2365 Protein tyrosine/serin 98.3 4E-06 8.7E-11 62.2 8.0 63 48-110 121-184 (249)
40 KOG0791|consensus 98.2 1.2E-05 2.6E-10 62.0 9.4 88 31-118 254-348 (374)
41 PF13350 Y_phosphatase3: Tyros 98.2 5.8E-06 1.3E-10 57.4 6.7 38 59-97 121-158 (164)
42 KOG4228|consensus 97.9 5.4E-05 1.2E-09 65.2 8.0 85 31-115 694-788 (1087)
43 KOG1572|consensus 97.8 0.00022 4.8E-09 52.3 8.7 98 2-102 61-187 (249)
44 COG3453 Uncharacterized protei 97.7 0.0011 2.4E-08 43.9 10.2 95 1-101 3-124 (130)
45 KOG0793|consensus 97.7 0.00013 2.8E-09 60.6 7.0 89 31-119 891-991 (1004)
46 PF14671 DSPn: Dual specificit 97.6 0.00025 5.5E-09 48.3 6.1 62 45-106 46-114 (141)
47 KOG4228|consensus 97.5 0.00044 9.6E-09 59.8 7.3 88 31-118 980-1079(1087)
48 KOG4471|consensus 96.3 0.0076 1.7E-07 49.6 5.0 36 51-86 363-399 (717)
49 PF06602 Myotub-related: Myotu 94.4 0.11 2.3E-06 40.7 5.5 22 60-81 229-250 (353)
50 KOG1089|consensus 93.4 0.16 3.4E-06 41.9 4.8 32 50-81 331-363 (573)
51 TIGR03865 PQQ_CXXCW PQQ-depend 90.1 1.7 3.7E-05 30.0 6.5 30 60-91 114-143 (162)
52 PLN02160 thiosulfate sulfurtra 88.9 0.83 1.8E-05 30.6 4.1 30 59-91 78-107 (136)
53 cd01518 RHOD_YceA Member of th 88.5 0.79 1.7E-05 28.6 3.6 29 60-91 59-87 (101)
54 COG0607 PspE Rhodanese-related 88.5 0.6 1.3E-05 29.3 3.0 27 59-87 58-84 (110)
55 cd01533 4RHOD_Repeat_2 Member 88.4 1.7 3.8E-05 27.5 5.2 27 61-90 65-91 (109)
56 PRK01415 hypothetical protein; 86.9 1.7 3.7E-05 32.4 5.0 29 60-91 169-197 (247)
57 PRK00142 putative rhodanese-re 86.5 1.4 3.1E-05 33.9 4.5 27 61-90 170-196 (314)
58 PRK05320 rhodanese superfamily 86.4 1.6 3.5E-05 32.6 4.7 27 61-90 174-200 (257)
59 cd01528 RHOD_2 Member of the R 85.6 3.2 6.9E-05 25.8 5.2 28 61-91 57-84 (101)
60 cd01520 RHOD_YbbB Member of th 84.6 3.1 6.8E-05 27.3 5.0 31 59-91 83-113 (128)
61 cd01523 RHOD_Lact_B Member of 84.1 1.4 3.1E-05 27.4 3.0 28 60-90 59-86 (100)
62 PF03861 ANTAR: ANTAR domain; 84.1 2.5 5.4E-05 23.8 3.8 26 77-102 15-40 (56)
63 cd01448 TST_Repeat_1 Thiosulfa 84.0 2.9 6.3E-05 26.9 4.6 43 47-91 63-106 (122)
64 cd01522 RHOD_1 Member of the R 81.7 3.3 7.2E-05 26.7 4.2 29 59-90 61-89 (117)
65 PF00581 Rhodanese: Rhodanese- 81.2 5.4 0.00012 24.7 5.0 58 33-91 34-98 (113)
66 cd01534 4RHOD_Repeat_3 Member 81.0 2.9 6.4E-05 25.7 3.6 27 61-90 55-81 (95)
67 cd01532 4RHOD_Repeat_1 Member 81.0 3.5 7.5E-05 25.3 3.9 28 62-90 50-77 (92)
68 COG1660 Predicted P-loop-conta 80.8 1.4 3.1E-05 33.2 2.3 21 60-80 238-261 (286)
69 smart00400 ZnF_CHCC zinc finge 80.7 2.2 4.8E-05 23.9 2.7 32 66-99 23-54 (55)
70 PF03668 ATP_bind_2: P-loop AT 79.9 3.3 7.1E-05 31.6 4.1 19 64-82 244-262 (284)
71 cd01529 4RHOD_Repeats Member o 76.5 4.9 0.00011 24.6 3.6 28 60-90 54-81 (96)
72 PRK10886 DnaA initiator-associ 76.4 7.9 0.00017 27.7 5.1 38 45-85 24-61 (196)
73 COG2927 HolC DNA polymerase II 76.2 3.7 7.9E-05 28.1 3.1 24 48-71 15-38 (144)
74 PRK05416 glmZ(sRNA)-inactivati 76.1 4.9 0.00011 30.6 4.1 37 46-82 222-265 (288)
75 PRK11493 sseA 3-mercaptopyruva 76.1 4.6 9.9E-05 30.3 3.9 28 60-90 229-256 (281)
76 PF02673 BacA: Bacitracin resi 76.0 3.3 7.2E-05 31.0 3.1 27 70-98 159-185 (259)
77 PF01807 zf-CHC2: CHC2 zinc fi 76.0 3.8 8.3E-05 25.8 3.0 36 66-103 54-89 (97)
78 PRK05728 DNA polymerase III su 75.9 4.4 9.6E-05 27.4 3.5 28 45-72 12-39 (142)
79 PF04364 DNA_pol3_chi: DNA pol 74.6 5.1 0.00011 26.9 3.5 24 48-71 15-38 (137)
80 PRK09629 bifunctional thiosulf 74.4 8.4 0.00018 32.5 5.4 28 60-90 221-248 (610)
81 PRK06646 DNA polymerase III su 73.8 5.5 0.00012 27.5 3.6 28 45-72 12-39 (154)
82 cd05567 PTS_IIB_mannitol PTS_I 73.3 4.3 9.3E-05 24.9 2.7 18 63-80 1-18 (87)
83 PRK12554 undecaprenyl pyrophos 73.2 3.8 8.2E-05 31.1 2.8 27 70-98 165-191 (276)
84 cd01443 Cdc25_Acr2p Cdc25 enzy 72.9 12 0.00026 23.8 4.8 19 62-80 66-84 (113)
85 TIGR00853 pts-lac PTS system, 72.6 3.7 8.1E-05 25.8 2.3 17 63-80 4-20 (95)
86 cd01447 Polysulfide_ST Polysul 72.2 5.6 0.00012 24.4 3.1 29 59-90 58-86 (103)
87 PF10302 DUF2407: DUF2407 ubiq 72.0 2.3 4.9E-05 27.1 1.2 10 63-72 86-95 (97)
88 TIGR00753 undec_PP_bacA undeca 71.8 4.3 9.4E-05 30.4 2.9 26 70-97 159-184 (255)
89 cd01525 RHOD_Kc Member of the 71.3 7.7 0.00017 24.0 3.6 26 62-90 65-90 (105)
90 PRK00281 undecaprenyl pyrophos 71.3 4.5 9.8E-05 30.5 2.9 27 70-98 163-189 (268)
91 PRK05772 translation initiatio 71.1 9.5 0.00021 30.1 4.7 13 61-73 166-178 (363)
92 TIGR03642 cas_csx13 CRISPR-ass 70.9 11 0.00024 25.1 4.3 55 35-89 59-116 (124)
93 PRK10287 thiosulfate:cyanide s 70.9 11 0.00024 24.0 4.3 19 61-80 59-77 (104)
94 cd01449 TST_Repeat_2 Thiosulfa 70.9 13 0.00027 23.5 4.7 28 61-91 77-104 (118)
95 PF09623 Cas_NE0113: CRISPR-as 70.5 11 0.00025 27.6 4.8 55 35-89 82-138 (224)
96 TIGR02981 phageshock_pspE phag 70.4 18 0.00038 22.9 5.2 27 61-90 57-83 (101)
97 cd01530 Cdc25 Cdc25 phosphatas 68.6 6 0.00013 25.8 2.8 25 60-86 66-91 (121)
98 smart00450 RHOD Rhodanese Homo 68.3 17 0.00038 21.5 4.7 29 60-91 54-82 (100)
99 PF13344 Hydrolase_6: Haloacid 67.7 28 0.0006 21.9 7.1 71 45-117 13-96 (101)
100 cd01519 RHOD_HSP67B2 Member of 67.6 10 0.00023 23.4 3.7 28 61-91 65-92 (106)
101 TIGR00512 salvage_mtnA S-methy 67.5 14 0.0003 28.8 4.9 12 61-72 142-157 (331)
102 PRK06036 translation initiatio 66.4 14 0.0003 28.9 4.8 17 61-77 147-163 (339)
103 cd01527 RHOD_YgaP Member of th 65.7 9.7 0.00021 23.3 3.2 18 59-77 51-68 (99)
104 cd01526 RHOD_ThiF Member of th 65.6 8.7 0.00019 24.8 3.1 28 60-90 70-97 (122)
105 TIGR03167 tRNA_sel_U_synt tRNA 64.8 21 0.00045 27.5 5.4 27 62-90 74-100 (311)
106 PRK11784 tRNA 2-selenouridine 64.5 23 0.00049 27.7 5.6 28 61-90 87-114 (345)
107 PRK00162 glpE thiosulfate sulf 64.5 24 0.00053 22.0 5.0 36 52-91 49-84 (108)
108 cd01531 Acr2p Eukaryotic arsen 63.9 16 0.00036 23.1 4.1 22 61-82 61-82 (113)
109 COG1054 Predicted sulfurtransf 63.9 20 0.00043 27.6 5.0 42 44-87 152-195 (308)
110 COG2230 Cfa Cyclopropane fatty 63.9 53 0.0011 25.1 7.3 82 46-127 153-243 (283)
111 TIGR00762 DegV EDD domain prot 63.4 54 0.0012 24.5 7.4 62 45-106 61-152 (275)
112 COG0794 GutQ Predicted sugar p 62.7 21 0.00045 25.9 4.7 26 59-87 36-61 (202)
113 PF02302 PTS_IIB: PTS system, 62.6 8.7 0.00019 23.2 2.5 16 64-79 1-16 (90)
114 PRK09590 celB cellobiose phosp 62.4 7.7 0.00017 24.9 2.3 14 63-76 2-15 (104)
115 cd01444 GlpE_ST GlpE sulfurtra 62.3 17 0.00038 21.9 3.9 29 59-90 53-81 (96)
116 PLN02723 3-mercaptopyruvate su 62.0 9.8 0.00021 29.2 3.2 17 59-76 266-282 (320)
117 COG3707 AmiR Response regulato 61.5 10 0.00022 27.3 2.9 24 80-103 150-173 (194)
118 COG1968 BacA Undecaprenyl pyro 59.9 11 0.00024 28.6 3.0 25 71-97 165-189 (270)
119 PRK05720 mtnA methylthioribose 58.8 27 0.00059 27.3 5.1 15 61-75 146-160 (344)
120 PF12554 MOZART1: Mitotic-spin 58.4 30 0.00065 19.1 4.6 31 72-103 18-48 (48)
121 PRK08334 translation initiatio 58.0 24 0.00051 27.9 4.6 11 63-73 161-171 (356)
122 TIGR02094 more_P_ylases alpha- 57.6 15 0.00031 31.0 3.7 36 63-101 161-199 (601)
123 PRK05569 flavodoxin; Provision 57.6 30 0.00065 22.7 4.6 72 47-124 68-140 (141)
124 PRK13352 thiamine biosynthesis 57.3 46 0.00099 26.9 6.1 72 48-119 142-248 (431)
125 COG2897 SseA Rhodanese-related 56.9 15 0.00033 28.0 3.4 21 58-78 230-250 (285)
126 COG3564 Uncharacterized protei 56.3 19 0.00042 23.0 3.2 28 47-74 9-36 (116)
127 cd01521 RHOD_PspE2 Member of t 56.3 21 0.00045 22.5 3.5 30 59-90 61-91 (110)
128 COG4738 Predicted transcriptio 55.5 9.3 0.0002 25.2 1.7 19 71-89 23-41 (124)
129 PRK10499 PTS system N,N'-diace 55.5 31 0.00067 22.1 4.2 29 63-91 4-33 (106)
130 smart00488 DEXDc2 DEAD-like he 55.3 41 0.00089 25.4 5.5 40 46-85 11-50 (289)
131 smart00489 DEXDc3 DEAD-like he 55.3 41 0.00089 25.4 5.5 40 46-85 11-50 (289)
132 PRK05600 thiamine biosynthesis 54.7 15 0.00032 29.0 3.1 25 63-90 333-357 (370)
133 COG3414 SgaB Phosphotransferas 54.6 28 0.00061 21.9 3.8 29 63-91 2-32 (93)
134 PF01964 ThiC: ThiC family; I 54.3 50 0.0011 26.6 5.9 73 47-119 137-244 (420)
135 TIGR02093 P_ylase glycogen/sta 53.1 34 0.00073 30.0 5.1 40 61-103 295-338 (794)
136 PRK13938 phosphoheptose isomer 52.3 45 0.00098 23.8 5.1 39 45-86 28-66 (196)
137 TIGR00190 thiC thiamine biosyn 52.1 62 0.0013 26.1 6.1 51 48-98 139-207 (423)
138 PRK07411 hypothetical protein; 51.8 22 0.00048 28.2 3.7 28 61-91 341-368 (390)
139 PRK11449 putative deoxyribonuc 51.4 35 0.00075 25.4 4.5 56 46-101 111-172 (258)
140 PRK10310 PTS system galactitol 51.2 14 0.00031 23.1 2.1 27 64-90 4-32 (94)
141 PF13147 Amidohydro_4: Amidohy 51.0 88 0.0019 22.3 6.8 54 48-101 222-280 (304)
142 KOG1529|consensus 50.8 23 0.0005 27.1 3.4 54 33-86 204-260 (286)
143 PF05562 WCOR413: Cold acclima 50.7 42 0.00091 24.0 4.5 40 54-93 23-67 (187)
144 TIGR03573 WbuX N-acetyl sugar 48.7 40 0.00087 26.2 4.7 32 69-101 283-314 (343)
145 PRK14985 maltodextrin phosphor 48.6 43 0.00094 29.3 5.1 39 62-103 301-343 (798)
146 PRK00414 gmhA phosphoheptose i 48.5 39 0.00085 23.9 4.2 32 45-79 27-58 (192)
147 cd01720 Sm_D2 The eukaryotic S 48.3 26 0.00057 21.7 2.9 28 52-79 4-31 (87)
148 TIGR02584 cas_NE0113 CRISPR-as 48.2 51 0.0011 24.0 4.7 44 48-91 99-146 (209)
149 PF12921 ATP13: Mitochondrial 47.8 52 0.0011 21.7 4.5 31 94-125 73-103 (126)
150 PRK01269 tRNA s(4)U8 sulfurtra 47.6 33 0.00072 28.0 4.2 28 60-90 447-474 (482)
151 COG1228 HutI Imidazolonepropio 47.3 83 0.0018 25.2 6.3 49 52-101 296-347 (406)
152 cd04300 GT1_Glycogen_Phosphory 47.2 50 0.0011 29.0 5.3 39 62-103 299-341 (797)
153 PHA02540 61 DNA primase; Provi 46.7 44 0.00094 26.2 4.5 38 64-103 53-90 (337)
154 PF06415 iPGM_N: BPG-independe 46.2 21 0.00046 26.2 2.6 42 45-86 42-85 (223)
155 TIGR01391 dnaG DNA primase, ca 45.8 26 0.00056 28.0 3.3 35 66-102 55-89 (415)
156 cd05564 PTS_IIB_chitobiose_lic 45.7 20 0.00043 22.4 2.1 13 64-76 1-13 (96)
157 cd05565 PTS_IIB_lactose PTS_II 45.3 18 0.00039 23.0 1.9 25 64-90 2-29 (99)
158 COG0182 Predicted translation 44.7 15 0.00033 28.6 1.7 31 60-90 148-182 (346)
159 PRK13936 phosphoheptose isomer 43.8 74 0.0016 22.5 5.1 33 46-81 27-59 (197)
160 PF12643 MazG-like: MazG-like 43.7 84 0.0018 20.0 5.3 50 76-125 42-96 (98)
161 PF04309 G3P_antiterm: Glycero 43.4 53 0.0012 23.2 4.2 55 51-106 33-120 (175)
162 PF13378 MR_MLE_C: Enolase C-t 43.1 82 0.0018 19.7 5.0 23 48-70 32-54 (111)
163 PRK15043 transcriptional regul 42.9 64 0.0014 24.1 4.7 62 61-122 161-234 (243)
164 PRK02947 hypothetical protein; 42.9 49 0.0011 24.4 4.2 33 45-80 23-55 (246)
165 COG1440 CelA Phosphotransferas 41.9 26 0.00056 22.6 2.2 63 63-126 2-72 (102)
166 PRK06371 translation initiatio 41.9 31 0.00067 26.9 3.0 21 53-73 128-148 (329)
167 PRK05333 NAD-dependent deacety 41.8 23 0.0005 26.8 2.3 24 54-77 11-34 (285)
168 PF14746 WASH-7_C: WASH comple 41.7 67 0.0015 22.6 4.4 52 47-102 59-111 (170)
169 cd00133 PTS_IIB PTS_IIB: subun 41.6 23 0.00051 20.4 1.9 18 64-81 1-18 (84)
170 cd04299 GT1_Glycogen_Phosphory 41.1 41 0.00089 29.4 3.9 37 63-102 248-288 (778)
171 PRK14986 glycogen phosphorylas 41.0 62 0.0013 28.5 4.9 40 61-103 311-354 (815)
172 TIGR00644 recJ single-stranded 40.0 90 0.0019 25.9 5.6 55 36-90 27-83 (539)
173 PF14532 Sigma54_activ_2: Sigm 39.9 76 0.0017 20.7 4.4 33 45-77 4-36 (138)
174 cd04445 DEP_PLEK1 DEP (Disheve 39.9 35 0.00076 21.8 2.5 36 62-102 24-60 (99)
175 PRK08762 molybdopterin biosynt 39.4 82 0.0018 24.7 5.1 28 60-90 55-82 (376)
176 cd00687 Terpene_cyclase_nonpla 39.2 76 0.0016 23.7 4.8 22 81-102 232-253 (303)
177 PF13720 Acetyltransf_11: Udp 39.2 90 0.002 19.0 5.0 35 71-105 26-63 (83)
178 cd00308 enolase_like Enolase-s 38.9 1E+02 0.0022 22.1 5.3 29 48-76 182-210 (229)
179 PF12668 DUF3791: Protein of u 38.5 71 0.0015 18.2 3.6 25 79-103 6-30 (62)
180 PF06838 Met_gamma_lyase: Meth 38.4 61 0.0013 25.9 4.2 68 26-107 125-192 (403)
181 PRK11493 sseA 3-mercaptopyruva 37.6 83 0.0018 23.5 4.8 39 50-90 74-113 (281)
182 PF15195 TMEM210: TMEM210 fami 37.1 59 0.0013 20.8 3.2 26 66-91 2-27 (116)
183 TIGR01460 HAD-SF-IIA Haloacid 37.1 1E+02 0.0022 22.3 5.1 73 45-118 13-98 (236)
184 cd04765 HTH_MlrA-like_sg2 Heli 37.0 1.1E+02 0.0023 19.2 6.3 42 84-125 53-94 (99)
185 KOG0235|consensus 36.9 1.5E+02 0.0032 21.7 5.7 43 48-96 138-184 (214)
186 PF00270 DEAD: DEAD/DEAH box h 36.7 1.2E+02 0.0025 20.0 5.0 25 61-85 13-37 (169)
187 PF09994 DUF2235: Uncharacteri 36.4 1.8E+02 0.0039 21.8 6.4 54 45-101 74-136 (277)
188 PRK07414 cob(I)yrinic acid a,c 36.4 60 0.0013 23.0 3.6 26 60-86 19-44 (178)
189 TIGR01927 menC_gamma/gm+ o-suc 36.3 70 0.0015 24.3 4.2 29 48-76 243-271 (307)
190 cd01294 DHOase Dihydroorotase 36.3 1.9E+02 0.0042 22.0 7.3 56 48-103 112-183 (335)
191 TIGR01245 trpD anthranilate ph 36.1 1.7E+02 0.0037 22.6 6.4 67 48-119 87-158 (330)
192 cd06206 bifunctional_CYPOR The 36.0 2.1E+02 0.0046 22.4 7.2 51 54-104 320-375 (384)
193 cd01906 proteasome_protease_Hs 35.6 60 0.0013 22.1 3.5 35 68-102 128-162 (182)
194 KOG2634|consensus 35.5 1.3E+02 0.0028 24.0 5.5 57 63-119 404-474 (476)
195 PF03853 YjeF_N: YjeF-related 35.1 85 0.0018 21.6 4.2 42 50-91 11-54 (169)
196 PF12637 TSCPD: TSCPD domain; 35.0 38 0.00083 21.2 2.2 19 87-105 52-70 (95)
197 cd01701 PolY_Rev1 DNA polymera 34.6 34 0.00074 27.1 2.4 63 45-112 54-123 (404)
198 TIGR03675 arCOG00543 arCOG0054 34.3 92 0.002 26.5 4.9 35 45-80 385-419 (630)
199 cd01524 RHOD_Pyr_redox Member 33.9 77 0.0017 18.9 3.5 18 59-77 48-65 (90)
200 cd06199 SiR Cytochrome p450- l 33.9 2.3E+02 0.0049 22.1 7.3 50 54-103 299-350 (360)
201 PF13580 SIS_2: SIS domain; PD 33.9 85 0.0018 20.7 3.9 25 45-69 18-42 (138)
202 PHA03338 US22 family homolog; 33.8 48 0.001 25.6 2.8 42 64-105 157-200 (344)
203 PRK15129 L-Ala-D/L-Glu epimera 33.6 84 0.0018 24.0 4.3 29 48-76 254-282 (321)
204 PTZ00458 acyl CoA binding prot 33.6 1.2E+02 0.0026 18.9 4.3 32 92-123 5-36 (90)
205 PRK05667 dnaG DNA primase; Val 33.5 57 0.0012 27.4 3.5 37 65-103 56-92 (580)
206 KOG0870|consensus 33.2 1.7E+02 0.0038 20.5 5.4 76 51-128 16-103 (172)
207 TIGR00274 N-acetylmuramic acid 33.1 1.6E+02 0.0035 22.4 5.7 49 45-93 40-88 (291)
208 PF03807 F420_oxidored: NADP o 32.9 96 0.0021 18.6 3.8 26 45-72 71-96 (96)
209 COG0369 CysJ Sulfite reductase 32.7 2.3E+02 0.0051 24.0 7.0 58 46-103 518-577 (587)
210 PRK05986 cob(I)alamin adenolsy 32.5 1.2E+02 0.0025 21.8 4.5 27 60-86 20-47 (191)
211 PRK05105 O-succinylbenzoate sy 32.4 67 0.0014 24.6 3.6 39 47-85 243-283 (322)
212 cd05566 PTS_IIB_galactitol PTS 32.3 57 0.0012 19.6 2.6 17 64-80 2-18 (89)
213 PF01026 TatD_DNase: TatD rela 32.2 32 0.00069 25.3 1.8 38 46-83 108-145 (255)
214 PRK12570 N-acetylmuramic acid- 32.2 96 0.0021 23.7 4.4 47 45-91 41-87 (296)
215 PRK11070 ssDNA exonuclease Rec 32.2 1.3E+02 0.0028 25.4 5.4 37 38-74 44-81 (575)
216 PF00343 Phosphorylase: Carboh 32.0 1.7E+02 0.0036 25.5 6.0 37 63-102 214-254 (713)
217 PF14698 ASL_C2: Argininosucci 31.9 1.1E+02 0.0024 17.9 3.8 24 78-102 5-28 (70)
218 cd05563 PTS_IIB_ascorbate PTS_ 31.8 52 0.0011 19.6 2.4 17 64-80 1-17 (86)
219 PF01451 LMWPc: Low molecular 31.6 62 0.0013 21.1 2.9 15 65-79 1-15 (138)
220 cd01295 AdeC Adenine deaminase 31.5 1.9E+02 0.0042 22.9 6.2 49 49-100 121-174 (422)
221 KOG1530|consensus 31.3 37 0.0008 23.0 1.7 15 63-78 90-104 (136)
222 cd05007 SIS_Etherase N-acetylm 31.3 71 0.0015 23.7 3.5 44 45-91 32-78 (257)
223 PF03102 NeuB: NeuB family; I 31.2 49 0.0011 24.6 2.5 28 45-73 125-152 (241)
224 PF10740 DUF2529: Protein of u 31.1 70 0.0015 22.6 3.1 29 45-73 21-49 (172)
225 TIGR01502 B_methylAsp_ase meth 30.7 2.4E+02 0.0051 22.7 6.5 32 48-79 334-366 (408)
226 cd00158 RHOD Rhodanese Homolog 30.7 96 0.0021 17.8 3.5 25 59-85 47-71 (89)
227 PRK09284 thiamine biosynthesis 30.7 2.2E+02 0.0048 24.1 6.3 54 48-101 294-367 (607)
228 COG0279 GmhA Phosphoheptose is 30.4 87 0.0019 22.2 3.5 25 45-69 24-48 (176)
229 TIGR01928 menC_lowGC/arch o-su 30.2 93 0.002 23.8 4.0 37 48-84 260-298 (324)
230 COG0422 ThiC Thiamine biosynth 30.2 2.2E+02 0.0047 23.0 6.0 54 48-101 140-215 (432)
231 cd03316 MR_like Mandelate race 30.1 1.2E+02 0.0026 23.3 4.6 28 48-76 277-304 (357)
232 cd08307 Death_Pelle Death doma 30.0 91 0.002 19.8 3.3 30 73-102 48-77 (97)
233 cd03315 MLE_like Muconate lact 29.9 77 0.0017 23.3 3.5 25 48-72 217-241 (265)
234 PF13177 DNA_pol3_delta2: DNA 29.9 1.8E+02 0.0039 19.7 5.9 40 49-89 3-45 (162)
235 PF00580 UvrD-helicase: UvrD/R 29.9 69 0.0015 23.5 3.2 32 61-92 12-45 (315)
236 PRK07878 molybdopterin biosynt 29.8 83 0.0018 24.9 3.8 28 60-90 341-368 (392)
237 COG4006 Uncharacterized protei 29.4 1.1E+02 0.0025 22.9 4.1 80 46-126 135-217 (278)
238 PRK10318 hypothetical protein; 29.3 78 0.0017 21.1 3.0 32 45-76 67-102 (121)
239 COG4229 Predicted enolase-phos 29.3 82 0.0018 22.8 3.3 28 45-72 102-129 (229)
240 PRK05451 dihydroorotase; Provi 29.3 2.6E+02 0.0057 21.6 6.4 58 49-106 118-192 (345)
241 cd01535 4RHOD_Repeat_4 Member 29.3 1.8E+02 0.0039 19.5 5.0 25 60-86 47-71 (145)
242 PF10727 Rossmann-like: Rossma 29.1 48 0.001 22.0 2.0 30 47-76 80-110 (127)
243 PRK13744 conjugal transfer pro 28.9 76 0.0017 18.7 2.6 25 6-30 16-40 (83)
244 PF10652 DUF2480: Protein of u 28.8 58 0.0013 22.9 2.4 42 31-72 27-72 (167)
245 KOG1905|consensus 28.8 58 0.0013 25.3 2.6 34 45-78 38-71 (353)
246 COG1782 Predicted metal-depend 28.6 1.3E+02 0.0028 25.4 4.6 44 45-89 391-436 (637)
247 TIGR00524 eIF-2B_rel eIF-2B al 28.5 70 0.0015 24.5 3.1 13 61-73 118-130 (303)
248 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.5 2.5E+02 0.0055 20.9 10.7 90 33-124 164-269 (275)
249 PF14417 MEDS: MEDS: MEthanoge 28.5 1.5E+02 0.0033 20.7 4.7 27 45-71 30-56 (191)
250 cd03323 D-glucarate_dehydratas 28.5 96 0.0021 24.6 3.9 32 48-79 298-331 (395)
251 PRK00481 NAD-dependent deacety 28.2 47 0.001 24.4 2.0 64 57-121 8-89 (242)
252 cd03753 proteasome_alpha_type_ 28.2 84 0.0018 22.4 3.3 34 69-102 161-194 (213)
253 PLN02444 HMP-P synthase 28.1 2.1E+02 0.0045 24.4 5.8 54 48-101 299-372 (642)
254 PF00288 GHMP_kinases_N: GHMP 28.1 67 0.0015 18.2 2.3 16 71-86 12-27 (67)
255 COG4359 Uncharacterized conser 28.1 2.4E+02 0.0052 20.5 6.2 68 54-126 151-218 (220)
256 TIGR02689 ars_reduc_gluta arse 27.9 69 0.0015 20.8 2.6 21 63-84 1-21 (126)
257 COG0084 TatD Mg-dependent DNas 27.8 1.2E+02 0.0025 22.8 4.0 55 46-100 109-169 (256)
258 PF05582 Peptidase_U57: YabG p 27.6 28 0.0006 26.6 0.7 13 61-73 226-238 (287)
259 cd06824 PLPDE_III_Yggs_like Py 27.5 1.7E+02 0.0038 20.9 4.9 28 63-102 119-148 (224)
260 KOG1838|consensus 27.3 40 0.00087 27.1 1.6 56 49-106 141-198 (409)
261 COG1513 CynS Cyanate lyase [In 27.2 68 0.0015 21.7 2.4 45 51-95 9-53 (151)
262 TIGR02855 spore_yabG sporulati 27.2 28 0.00061 26.5 0.7 13 61-73 225-237 (283)
263 TIGR00625 tfb2 Transcription f 26.9 1.5E+02 0.0032 24.3 4.7 48 73-124 333-387 (448)
264 TIGR03633 arc_protsome_A prote 26.8 95 0.0021 22.3 3.4 35 68-102 157-191 (224)
265 PF03715 Noc2: Noc2p family; 26.6 56 0.0012 25.0 2.2 35 92-126 253-287 (299)
266 PF02353 CMAS: Mycolic acid cy 26.1 1.9E+02 0.0041 21.7 5.0 84 45-128 142-238 (273)
267 TIGR00604 rad3 DNA repair heli 26.0 2.2E+02 0.0047 24.5 5.8 58 45-102 12-83 (705)
268 PF00931 NB-ARC: NB-ARC domain 26.0 95 0.0021 22.7 3.4 36 48-83 5-40 (287)
269 PRK08624 hypothetical protein; 26.0 40 0.00087 26.8 1.4 37 66-103 59-100 (373)
270 PF02572 CobA_CobO_BtuR: ATP:c 25.7 1.1E+02 0.0023 21.5 3.4 25 62-87 3-27 (172)
271 KOG3020|consensus 25.7 80 0.0017 24.3 2.9 49 50-102 161-218 (296)
272 cd03764 proteasome_beta_archea 25.6 91 0.002 21.6 3.1 35 68-102 125-159 (188)
273 TIGR03819 heli_sec_ATPase heli 25.5 1.9E+02 0.004 22.5 5.0 33 49-81 165-197 (340)
274 cd00009 AAA The AAA+ (ATPases 25.4 1.7E+02 0.0038 18.0 5.0 33 50-82 5-39 (151)
275 TIGR01456 CECR5 HAD-superfamil 25.4 1.5E+02 0.0032 22.7 4.4 46 45-91 15-64 (321)
276 PRK13530 arsenate reductase; P 25.3 1.1E+02 0.0025 20.1 3.4 22 63-85 4-25 (133)
277 cd01302 Cyclic_amidohydrolases 25.1 2E+02 0.0043 22.0 5.1 50 50-103 116-167 (337)
278 COG0394 Wzb Protein-tyrosine-p 25.0 51 0.0011 22.2 1.6 17 63-79 3-19 (139)
279 cd03756 proteasome_alpha_arche 24.8 1.1E+02 0.0024 21.7 3.4 35 68-102 156-190 (211)
280 COG3265 GntK Gluconate kinase 24.7 88 0.0019 21.8 2.7 77 35-120 42-129 (161)
281 COG2176 PolC DNA polymerase II 24.7 1.4E+02 0.003 27.9 4.4 64 45-117 1187-1251(1444)
282 PRK08335 translation initiatio 24.6 2E+02 0.0043 21.9 4.8 13 60-72 108-120 (275)
283 KOG1016|consensus 24.6 79 0.0017 28.2 2.9 52 45-106 416-467 (1387)
284 PRK10126 tyrosine phosphatase; 24.4 78 0.0017 21.2 2.4 19 63-81 3-21 (147)
285 PRK11391 etp phosphotyrosine-p 24.4 85 0.0018 21.1 2.6 19 63-81 3-21 (144)
286 KOG1158|consensus 24.4 4.6E+02 0.0099 22.7 7.3 59 47-105 576-637 (645)
287 PRK05441 murQ N-acetylmuramic 24.3 1.1E+02 0.0025 23.2 3.6 44 45-91 45-91 (299)
288 cd05006 SIS_GmhA Phosphoheptos 24.1 2E+02 0.0044 19.6 4.6 33 45-80 16-48 (177)
289 PF11237 DUF3038: Protein of u 23.9 2.7E+02 0.0058 19.7 5.2 29 75-103 70-98 (171)
290 cd00561 CobA_CobO_BtuR ATP:cor 23.9 1.8E+02 0.0039 20.1 4.2 24 63-86 3-27 (159)
291 PF13469 Sulfotransfer_3: Sulf 23.9 40 0.00086 22.6 0.9 15 71-85 6-21 (215)
292 COG2089 SpsE Sialic acid synth 23.8 1.3E+02 0.0028 23.7 3.7 29 45-76 159-189 (347)
293 cd03322 rpsA The starvation se 23.6 1.1E+02 0.0024 23.8 3.4 31 48-78 251-284 (361)
294 cd02042 ParA ParA and ParB of 23.4 1.7E+02 0.0036 17.7 3.7 22 65-86 3-25 (104)
295 PF05763 DUF835: Protein of un 23.4 2.4E+02 0.0052 18.9 6.5 48 46-106 58-107 (136)
296 PF12242 Eno-Rase_NADH_b: NAD( 23.3 1.3E+02 0.0029 18.3 3.0 21 63-83 40-61 (78)
297 TIGR03015 pepcterm_ATPase puta 23.3 2.4E+02 0.0053 20.3 5.1 48 35-82 11-63 (269)
298 TIGR02613 mob_myst_B mobile my 23.1 1.1E+02 0.0024 21.5 3.1 27 65-91 120-147 (186)
299 TIGR03634 arc_protsome_B prote 23.0 1.2E+02 0.0025 21.0 3.2 33 68-102 126-160 (185)
300 PRK05568 flavodoxin; Provision 23.0 2.2E+02 0.0048 18.4 5.6 57 61-124 81-140 (142)
301 PHA02593 62 clamp loader small 22.8 2.7E+02 0.0058 20.0 4.9 52 53-104 100-151 (191)
302 PF10236 DAP3: Mitochondrial r 22.7 2.1E+02 0.0047 21.8 4.8 53 51-103 10-68 (309)
303 PF14555 UBA_4: UBA-like domai 22.7 1.3E+02 0.0028 15.6 3.0 22 78-100 16-37 (43)
304 PRK10953 cysJ sulfite reductas 22.6 4.6E+02 0.01 22.2 7.1 50 54-103 539-590 (600)
305 cd00194 UBA Ubiquitin Associat 22.6 1.2E+02 0.0025 15.0 3.1 27 71-100 11-37 (38)
306 PRK14017 galactonate dehydrata 22.5 1.3E+02 0.0028 23.6 3.6 32 48-79 265-297 (382)
307 PTZ00138 small nuclear ribonuc 22.5 1E+02 0.0022 19.2 2.5 25 52-76 16-40 (89)
308 PRK10812 putative DNAse; Provi 22.5 1.7E+02 0.0037 21.8 4.2 29 48-76 110-138 (265)
309 PLN02806 complex I subunit 22.5 1.1E+02 0.0025 18.7 2.6 21 107-127 40-60 (81)
310 cd00268 DEADc DEAD-box helicas 22.5 2.4E+02 0.0051 19.3 4.7 22 62-83 36-57 (203)
311 PRK13107 preprotein translocas 22.3 3.1E+02 0.0067 24.7 6.1 69 34-105 420-498 (908)
312 TIGR00197 yjeF_nterm yjeF N-te 22.2 2.6E+02 0.0056 19.9 4.9 39 52-90 35-73 (205)
313 PRK10425 DNase TatD; Provision 22.1 1.9E+02 0.0041 21.5 4.3 28 48-75 107-134 (258)
314 PF14399 Transpep_BrtH: NlpC/p 22.1 1.5E+02 0.0032 22.2 3.8 29 45-73 71-99 (317)
315 PLN02150 terpene synthase/cycl 22.0 1.2E+02 0.0025 19.1 2.8 25 77-102 7-31 (96)
316 PRK02249 DNA primase large sub 22.0 3.3E+02 0.0071 21.4 5.7 50 45-102 219-268 (343)
317 TIGR00010 hydrolase, TatD fami 21.9 2.1E+02 0.0045 20.3 4.4 24 49-72 108-131 (252)
318 PF01656 CbiA: CobQ/CobB/MinD/ 21.9 1.8E+02 0.0038 19.6 4.0 25 65-89 2-27 (195)
319 PRK03996 proteasome subunit al 21.8 1.3E+02 0.0029 21.8 3.4 33 68-102 164-198 (241)
320 PF10096 DUF2334: Uncharacteri 21.8 2.8E+02 0.0062 20.3 5.2 45 30-74 32-80 (243)
321 KOG3425|consensus 21.7 1.9E+02 0.0042 19.3 3.7 29 45-73 45-75 (128)
322 PRK12402 replication factor C 21.6 2.5E+02 0.0054 21.0 5.0 31 49-79 21-53 (337)
323 cd03755 proteasome_alpha_type_ 21.5 1.4E+02 0.003 21.2 3.4 32 69-102 157-190 (207)
324 TIGR01011 rpsB_bact ribosomal 21.4 1.3E+02 0.0028 22.0 3.3 27 45-71 45-71 (225)
325 PF12550 GCR1_C: Transcription 21.2 1.3E+02 0.0028 18.1 2.7 19 85-103 63-81 (81)
326 cd03760 proteasome_beta_type_4 21.1 1.3E+02 0.0028 21.1 3.2 28 75-102 136-167 (197)
327 PRK07679 pyrroline-5-carboxyla 21.0 3.2E+02 0.007 20.2 5.4 51 51-101 145-208 (279)
328 PF05186 Dpy-30: Dpy-30 motif; 21.0 65 0.0014 17.1 1.2 28 81-109 3-30 (42)
329 PRK13103 secA preprotein trans 20.9 1E+02 0.0022 27.6 2.9 26 45-70 432-457 (913)
330 PTZ00488 Proteasome subunit be 20.8 1E+02 0.0022 22.8 2.6 32 71-102 167-198 (247)
331 PF11044 TMEMspv1-c74-12: Plec 20.8 1.2E+02 0.0026 16.5 2.2 26 78-104 12-37 (49)
332 cd00338 Ser_Recombinase Serine 20.7 1.3E+02 0.0028 19.2 2.9 45 45-91 51-97 (137)
333 COG0159 TrpA Tryptophan syntha 20.7 3.4E+02 0.0074 20.6 5.4 81 46-126 28-121 (265)
334 TIGR01550 DOC_P1 death-on-curi 20.7 2.5E+02 0.0055 18.2 5.1 53 45-103 48-105 (121)
335 cd00115 LMWPc Substituted upda 20.7 1.1E+02 0.0023 20.1 2.5 16 64-79 2-17 (141)
336 PF09336 Vps4_C: Vps4 C termin 20.6 78 0.0017 18.2 1.6 20 90-109 30-49 (62)
337 PRK14116 gpmA phosphoglyceromu 20.6 2.7E+02 0.0059 20.0 4.8 46 45-96 153-202 (228)
338 cd00424 PolY Y-family of DNA p 20.5 1.1E+02 0.0023 23.6 2.8 68 45-117 5-79 (343)
339 PRK02866 cyanate hydratase; Va 20.4 97 0.0021 21.3 2.2 49 50-98 5-53 (147)
340 PF05891 Methyltransf_PK: AdoM 20.4 71 0.0015 23.5 1.7 32 46-77 33-70 (218)
341 cd01310 TatD_DNAse TatD like p 20.4 2.1E+02 0.0045 20.3 4.2 22 51-72 110-131 (251)
342 PRK12311 rpsB 30S ribosomal pr 20.3 1.4E+02 0.003 23.4 3.3 29 45-73 42-70 (326)
343 TIGR00856 pyrC_dimer dihydroor 20.1 4.2E+02 0.0091 20.5 6.9 57 49-105 115-188 (341)
344 COG4347 Predicted membrane pro 20.1 1.5E+02 0.0032 21.2 3.1 27 79-106 63-89 (200)
345 PRK09629 bifunctional thiosulf 20.1 2.8E+02 0.0061 23.6 5.3 41 48-90 66-107 (610)
No 1
>KOG1718|consensus
Probab=100.00 E-value=1.3e-35 Score=203.46 Aligned_cols=129 Identities=26% Similarity=0.342 Sum_probs=115.2
Q ss_pred CCccccceeec-CCCcc-------------eeehhhcc-ccccCceEEEEEeccCCCCC-cccHHHHHHHHHHHHhCCCc
Q psy18175 1 MAPIAIRTYLS-GLPDS-------------VCVLIKYQ-ADLFSHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQDTG 64 (132)
Q Consensus 1 ~s~i~~~l~l~-gi~~~-------------~~~~~~~~-~~~~~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~~~ 64 (132)
||+|.+.||++ |+... ++...+.+ ....+..|..+|+.|.+... .++|+.+.|.|+....+||+
T Consensus 17 ~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~ 96 (198)
T KOG1718|consen 17 MSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGK 96 (198)
T ss_pred hhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCc
Confidence 79999999999 55444 44433332 23446789999999999999 99999999999999999999
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy18175 65 VLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEARLQ 129 (132)
Q Consensus 65 VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~~~~ 129 (132)
+||||.+|+|||+++|+||||++.++++.||+.++|++||.+.||.||++||.+||++|+++.+.
T Consensus 97 TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~sV 161 (198)
T KOG1718|consen 97 TLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNASV 161 (198)
T ss_pred EEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999998763
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=6.9e-32 Score=182.78 Aligned_cols=122 Identities=34% Similarity=0.487 Sum_probs=107.0
Q ss_pred CCccccceeecCCCcc--------------eeehhhccc-cccCceEEEEEeccCCCCC-cccHHHHHHHHHHHHhCCCc
Q psy18175 1 MAPIAIRTYLSGLPDS--------------VCVLIKYQA-DLFSHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQDTG 64 (132)
Q Consensus 1 ~s~i~~~l~l~gi~~~--------------~~~~~~~~~-~~~~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~~~ 64 (132)
+|+|.|++|+|+.++. +++..+... ...+..|.++|+.|....+ .+.+..+++||+....+|++
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGK 80 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCe
Confidence 5899999999977765 444333222 2346789999999976666 78999999999999999999
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q psy18175 65 VLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKE 122 (132)
Q Consensus 65 VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~ 122 (132)
|||||.+|+|||+++++||||...||++++|+++++++||.+.||.+|++||..||+.
T Consensus 81 VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 81 VLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred EEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999973
No 3
>KOG1716|consensus
Probab=99.97 E-value=9.2e-31 Score=196.78 Aligned_cols=129 Identities=34% Similarity=0.437 Sum_probs=112.5
Q ss_pred CCccccceeecCCC--------------cceeehhhcccc--cc--CceEEEEEeccCCCCC-cccHHHHHHHHHHHHhC
Q psy18175 1 MAPIAIRTYLSGLP--------------DSVCVLIKYQAD--LF--SHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQ 61 (132)
Q Consensus 1 ~s~i~~~l~l~gi~--------------~~~~~~~~~~~~--~~--~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~ 61 (132)
++.|.|++|+|... +++++....+.. .. .+.|+++|+.|.+..+ ..+++++++||+.+..+
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~ 154 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREK 154 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhC
Confidence 45788999999555 445554443331 12 5689999999999999 89999999999999999
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEARLQ 129 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~~~~ 129 (132)
|++|||||.+|+|||+++++||||+..+|++++|+++|+.+||.+.||.+|+.||.+||+.+..+...
T Consensus 155 ~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~ 222 (285)
T KOG1716|consen 155 GGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPS 222 (285)
T ss_pred CCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999876543
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.97 E-value=5.4e-30 Score=173.11 Aligned_cols=120 Identities=37% Similarity=0.548 Sum_probs=106.0
Q ss_pred CCccccceeecCCCcc--------------eeehhhccc---cccCceEEEEEeccCCCCC-cccHHHHHHHHHHHHhCC
Q psy18175 1 MAPIAIRTYLSGLPDS--------------VCVLIKYQA---DLFSHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQD 62 (132)
Q Consensus 1 ~s~i~~~l~l~gi~~~--------------~~~~~~~~~---~~~~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~ 62 (132)
||+|.+++|+||.++. +++..+.+. ...+..|.++|+.|+..++ ...++.+++||+....+|
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~ 81 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKG 81 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcC
Confidence 6899999999988776 444333221 2345689999999998777 778999999999999999
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFE 120 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e 120 (132)
++|||||.+|.|||++++++|||...++++++|+++||++||.+.||.+|+.||.+||
T Consensus 82 ~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 82 GKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.97 E-value=4.2e-30 Score=172.83 Aligned_cols=111 Identities=31% Similarity=0.392 Sum_probs=99.5
Q ss_pred CCCcceeehhhccc----cccCceEEEEEeccCCCCC-cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH
Q psy18175 12 GLPDSVCVLIKYQA----DLFSHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS 86 (132)
Q Consensus 12 gi~~~~~~~~~~~~----~~~~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~ 86 (132)
||++++++..+.+. ...+..++++|+.|....+ .+.++.+++||+++..+|++|||||.+|+|||+++++||||.
T Consensus 18 ~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 97 (133)
T PF00782_consen 18 GITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMK 97 (133)
T ss_dssp TEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHH
Confidence 66777776555433 4456789999999966666 899999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q psy18175 87 ALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKE 122 (132)
Q Consensus 87 ~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~ 122 (132)
..+|++++|+++++++||.+.||++|++||..||++
T Consensus 98 ~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 98 KNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp HHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999974
No 6
>KOG1717|consensus
Probab=99.97 E-value=1.4e-30 Score=189.95 Aligned_cols=126 Identities=44% Similarity=0.600 Sum_probs=112.1
Q ss_pred ccccceeecCCCcc--------------eeehhhcc---ccccCceEEEEEeccCCCCC-cccHHHHHHHHHHHHhCCCc
Q psy18175 3 PIAIRTYLSGLPDS--------------VCVLIKYQ---ADLFSHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQDTG 64 (132)
Q Consensus 3 ~i~~~l~l~gi~~~--------------~~~~~~~~---~~~~~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~~~ 64 (132)
+|.|.+|+|+.+++ +++..+.+ .+..++.|..||+.|+..++ ..+|++|+.||++++.++..
T Consensus 174 ~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cg 253 (343)
T KOG1717|consen 174 EILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCG 253 (343)
T ss_pred hhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCc
Confidence 79999999965554 56654443 23446789999999999999 99999999999999999999
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy18175 65 VLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEARL 128 (132)
Q Consensus 65 VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~~~ 128 (132)
|||||.+|+|||+|+++||||++..+++.+|+++|+.++..|.||.+|+.||.+||+.|.-...
T Consensus 254 vLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s~ 317 (343)
T KOG1717|consen 254 VLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLESR 317 (343)
T ss_pred EEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccCc
Confidence 9999999999999999999999999999999999999999999999999999999998865443
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.94 E-value=2.5e-26 Score=185.77 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=105.9
Q ss_pred CCccccceeecCCC--------------cceeehhhccc---c--ccCceEEEEEeccCCCCCcccHHHHHHHHHHHHhC
Q psy18175 1 MAPIAIRTYLSGLP--------------DSVCVLIKYQA---D--LFSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQ 61 (132)
Q Consensus 1 ~s~i~~~l~l~gi~--------------~~~~~~~~~~~---~--~~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~ 61 (132)
+++|.|++|+|+.+ +++++..+++. . ..+..|+++|+.|...++.++++++++||++.+++
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~ 174 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQVRA 174 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 36899999999654 44566544432 1 13458999999998877788899999999999999
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHh-cCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMSA-LRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKEL 123 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~~-~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l 123 (132)
|++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||+.|+++|+.|++..
T Consensus 175 ~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 175 NKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999976 589999999999999999999999999999997654
No 8
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=1e-24 Score=158.56 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=100.6
Q ss_pred cCCCcceeehhh-ccccc---cCceEEEEEeccCCCCCcccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH
Q psy18175 11 SGLPDSVCVLIK-YQADL---FSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS 86 (132)
Q Consensus 11 ~gi~~~~~~~~~-~~~~~---~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~ 86 (132)
-|+++++.+... |.... .+..++++|++|...|+.+.++++++++++.+..|++|+|||.+|+||||+++++|||.
T Consensus 115 ~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~ 194 (241)
T PTZ00393 115 YNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194 (241)
T ss_pred cCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 367777755333 33322 36789999999999888888999999999999999999999999999999999999998
Q ss_pred hcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhhhhh
Q psy18175 87 ALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEARLQQ 130 (132)
Q Consensus 87 ~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~~~~~ 130 (132)
.|+++++|+++||++||.+ ++..|++.|.+|+++..++...+
T Consensus 195 -~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k~~~~~ 236 (241)
T PTZ00393 195 -FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKKKNCLR 236 (241)
T ss_pred -cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccccchhh
Confidence 6999999999999999998 48999999999999887665443
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=8.7e-25 Score=152.81 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=97.7
Q ss_pred ecCCCcceeehhh-ccccc---cCceEEEEEeccCCCCCcccHHHHHHHHHHHHhC----CCcEEEEcCCCCchHHHHHH
Q psy18175 10 LSGLPDSVCVLIK-YQADL---FSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQ----DTGVLVHCLAGVSRSVTITV 81 (132)
Q Consensus 10 l~gi~~~~~~~~~-~~~~~---~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~----~~~VlVHC~~G~~RS~~~~~ 81 (132)
--|+++++++... +++.. .+..|.++|+.|...|+.+.+..+++++++.+.. |++|+|||.+|+||||++++
T Consensus 38 ~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a 117 (166)
T PTZ00242 38 RYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVA 117 (166)
T ss_pred hCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3477888766433 33222 3678999999998877777888999999988755 89999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHh
Q psy18175 82 AYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEA 126 (132)
Q Consensus 82 ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~ 126 (132)
+|||...++++++|+++++++||.+. +..|+++|.+|++.+...
T Consensus 118 ~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 118 LALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999874 799999999999877654
No 10
>KOG1719|consensus
Probab=99.91 E-value=2.4e-24 Score=146.25 Aligned_cols=115 Identities=20% Similarity=0.155 Sum_probs=102.4
Q ss_pred cceeehhhcccccc-------CceEEEEEeccCCCCC-cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH
Q psy18175 15 DSVCVLIKYQADLF-------SHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS 86 (132)
Q Consensus 15 ~~~~~~~~~~~~~~-------~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~ 86 (132)
.+++++.+|+...+ +..++.+|..|....+ .+.+..+++||+.....|+.|+|||++|.+||+|+++||||.
T Consensus 54 gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq 133 (183)
T KOG1719|consen 54 GVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQ 133 (183)
T ss_pred eEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhh
Confidence 33677777654332 4578999999988877 899999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy18175 87 ALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEARLQ 129 (132)
Q Consensus 87 ~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~~~~ 129 (132)
..+|++++|+++++++||.+-..+++++.|.+|.+.+..+.++
T Consensus 134 ~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~~ss 176 (183)
T KOG1719|consen 134 HKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVANASS 176 (183)
T ss_pred hcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999988766554
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.86 E-value=8.6e-21 Score=134.22 Aligned_cols=97 Identities=27% Similarity=0.294 Sum_probs=81.1
Q ss_pred cCceEEEEEeccCCCCCcccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcC-CCHHHHHHHHHhhCCCC
Q psy18175 28 FSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALR-LSLNDAFTLVRARKSNI 106 (132)
Q Consensus 28 ~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~-~~~~~A~~~v~~~Rp~~ 106 (132)
.+..+.++|+.|+..++...++++++||+++.++|++|+|||.+|+||||++++||||.+.+ ++.++++.+++..||.
T Consensus 71 ~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~- 149 (180)
T COG2453 71 DGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG- 149 (180)
T ss_pred CCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc-
Confidence 35578899999999999999999999999999999999999999999999999999999955 5588888888888876
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy18175 107 APNFHFMEQLNSFEKELMEA 126 (132)
Q Consensus 107 ~p~~~~~~qL~~~e~~l~~~ 126 (132)
++....+++..|+...+.+
T Consensus 150 -~v~~~~q~~~~~e~~~~~~ 168 (180)
T COG2453 150 -AVVTEIQHLFELEQELFRK 168 (180)
T ss_pred -ccccHHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 12
>KOG1720|consensus
Probab=99.85 E-value=1.8e-20 Score=132.99 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=86.3
Q ss_pred CceEEEEEeccCCCCCcccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCC
Q psy18175 29 SHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAP 108 (132)
Q Consensus 29 ~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p 108 (132)
++..+.+|+.|...|+...+.++++.++.+.+ |++|.|||.+|+|||+++++||||+.+|+++.||+..+|..||.+..
T Consensus 115 Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~ 193 (225)
T KOG1720|consen 115 GIDHHDLFFADGSTPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVI 193 (225)
T ss_pred CceeeeeecCCCCCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCcccc
Confidence 56788999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q psy18175 109 NFHFMEQLNSFEK 121 (132)
Q Consensus 109 ~~~~~~qL~~~e~ 121 (132)
.+.+...+.++-.
T Consensus 194 gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 194 GPQQHKLLHKQRD 206 (225)
T ss_pred CHHHHHHHHHHHH
Confidence 9999888887755
No 13
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.56 E-value=5.2e-14 Score=89.92 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=66.0
Q ss_pred EEEEEeccCCCCC-cccHHHHHHHHHHHHh---CCCcEEEEcCCCCchHHHHHHHHHHHhc------CCCHHHHHHHHHh
Q psy18175 32 CQVFLIVCGWPKG-SKFNHSHCTFTEEARS---QDTGVLVHCLAGVSRSVTITVAYLMSAL------RLSLNDAFTLVRA 101 (132)
Q Consensus 32 ~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~---~~~~VlVHC~~G~~RS~~~~~ayLm~~~------~~~~~~A~~~v~~ 101 (132)
|.+.+++|...|+ ...+.++++.++.... .+++|+|||.+|.||||+++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 4455566655555 3455555555555543 2689999999999999999999988763 3678999999999
Q ss_pred hCCCCCCCHHHHHHHHH
Q psy18175 102 RKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 102 ~Rp~~~p~~~~~~qL~~ 118 (132)
.||....+..+...+.+
T Consensus 85 ~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 85 QRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhCCcHHHHHHHHH
Confidence 99999998887776654
No 14
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.56 E-value=5.2e-14 Score=89.92 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=66.0
Q ss_pred EEEEEeccCCCCC-cccHHHHHHHHHHHHh---CCCcEEEEcCCCCchHHHHHHHHHHHhc------CCCHHHHHHHHHh
Q psy18175 32 CQVFLIVCGWPKG-SKFNHSHCTFTEEARS---QDTGVLVHCLAGVSRSVTITVAYLMSAL------RLSLNDAFTLVRA 101 (132)
Q Consensus 32 ~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~---~~~~VlVHC~~G~~RS~~~~~ayLm~~~------~~~~~~A~~~v~~ 101 (132)
|.+.+++|...|+ ...+.++++.++.... .+++|+|||.+|.||||+++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 4455566655555 3455555555555543 2689999999999999999999988763 3678999999999
Q ss_pred hCCCCCCCHHHHHHHHH
Q psy18175 102 RKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 102 ~Rp~~~p~~~~~~qL~~ 118 (132)
.||....+..+...+.+
T Consensus 85 ~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 85 QRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhCCcHHHHHHHHH
Confidence 99999998887776654
No 15
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.56 E-value=1.7e-14 Score=99.90 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=48.7
Q ss_pred cCceEEEEEeccCCCCCcccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhc-CCCHHHHH
Q psy18175 28 FSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSAL-RLSLNDAF 96 (132)
Q Consensus 28 ~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~-~~~~~~A~ 96 (132)
.+..|+|+||.|...|+...+.++++-|...+++|++|+|||..|+||||++++++|+.-. .+++++|+
T Consensus 99 ~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 99 RGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp TT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred cCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 3568999999999999955556788889999999999999999999999999999988754 58899886
No 16
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.46 E-value=8.9e-13 Score=96.09 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=68.6
Q ss_pred cCceEEEEEeccCCCCC-cccHHHHHHHHHHHHhC-----CCcEEEEcCCCCchHHHHHHHHHHHhc-----CCCHHHHH
Q psy18175 28 FSHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQ-----DTGVLVHCLAGVSRSVTITVAYLMSAL-----RLSLNDAF 96 (132)
Q Consensus 28 ~~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~-----~~~VlVHC~~G~~RS~~~~~ayLm~~~-----~~~~~~A~ 96 (132)
..+.+.++...+++... .....+.++|+...... +++|+|||.+|+||||++++++++... ..++.+++
T Consensus 126 ~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v 205 (231)
T cd00047 126 ETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTV 205 (231)
T ss_pred CceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34456666666665544 33335555555554433 689999999999999999999976543 68899999
Q ss_pred HHHHhhCCCCCCCHHHHHHHHH
Q psy18175 97 TLVRARKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 97 ~~v~~~Rp~~~p~~~~~~qL~~ 118 (132)
..+|+.||.+..+..++..+..
T Consensus 206 ~~iR~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 206 KELRSQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred HHHHhccccccCCHHHHHHHHH
Confidence 9999999999999888877654
No 17
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.41 E-value=2.9e-12 Score=94.93 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=70.3
Q ss_pred CceEEEEEeccCCCCC-cccHHHHHHHHHHHHhC----CCcEEEEcCCCCchHHHHHHHHHHHh-----cCCCHHHHHHH
Q psy18175 29 SHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQ----DTGVLVHCLAGVSRSVTITVAYLMSA-----LRLSLNDAFTL 98 (132)
Q Consensus 29 ~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~----~~~VlVHC~~G~~RS~~~~~ayLm~~-----~~~~~~~A~~~ 98 (132)
.+.+.++...+++... +......++|+...... +++|+|||.+|+||||++++++++.. ...++.+++..
T Consensus 155 ~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~ 234 (258)
T smart00194 155 TRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKE 234 (258)
T ss_pred cEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4456666677776555 44556666666665543 68999999999999999999987743 46889999999
Q ss_pred HHhhCCCCCCCHHHHHHHHH
Q psy18175 99 VRARKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 99 v~~~Rp~~~p~~~~~~qL~~ 118 (132)
+|..||.+..+..++..+..
T Consensus 235 lR~~R~~~v~~~~Qy~f~~~ 254 (258)
T smart00194 235 LRSQRPGMVQTEEQYIFLYR 254 (258)
T ss_pred HHhccccccCCHHHHHHHHH
Confidence 99999999999988877654
No 18
>KOG2836|consensus
Probab=99.38 E-value=5.2e-12 Score=84.54 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=75.2
Q ss_pred cCCCcceeeh-hhccc---cccCceEEEEEeccCCCCCcccHHHHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHH
Q psy18175 11 SGLPDSVCVL-IKYQA---DLFSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARS--QDTGVLVHCLAGVSRSVTITVAYL 84 (132)
Q Consensus 11 ~gi~~~~~~~-~~~~~---~~~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~--~~~~VlVHC~~G~~RS~~~~~ayL 84 (132)
.|++.++.+. ..|.. ...+..++-.|++|...++.+..++..+.+..... -|..|.|||.+|+||++.+++.-|
T Consensus 40 ygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalal 119 (173)
T KOG2836|consen 40 YGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALAL 119 (173)
T ss_pred cCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHH
Confidence 3666665442 33433 33356777788888887776666666666554433 256899999999999999988887
Q ss_pred HHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy18175 85 MSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSF 119 (132)
Q Consensus 85 m~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~ 119 (132)
+.. ||.+++|++++|.+|..+. |..++..|..|
T Consensus 120 ie~-gmkyedave~ir~krrga~-n~kql~~leky 152 (173)
T KOG2836|consen 120 IEA-GMKYEDAVEMIRQKRRGAI-NSKQLLYLEKY 152 (173)
T ss_pred HHc-cccHHHHHHHHHHHhhccc-cHHHHHHHHHh
Confidence 765 9999999999999997654 44444444444
No 19
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.28 E-value=3.5e-11 Score=95.69 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=68.3
Q ss_pred EEEEEeccCCCCC----cccHHHHHHHHHHHHhCC---------CcEEEEcCCCCchHHHHHHHHHHHhcC-CCHHHHHH
Q psy18175 32 CQVFLIVCGWPKG----SKFNHSHCTFTEEARSQD---------TGVLVHCLAGVSRSVTITVAYLMSALR-LSLNDAFT 97 (132)
Q Consensus 32 ~~~i~~~D~~~~~----~~~~~~~~~fi~~~~~~~---------~~VlVHC~~G~~RS~~~~~ayLm~~~~-~~~~~A~~ 97 (132)
..++-+.+|++.. ...+...++.++.....+ ...+|||.+|+||||+++++++|...+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 4455555555544 223444444444432221 234799999999999999999998654 56999999
Q ss_pred HHHhhCCC-CCCCHHHHHHHHHHHHHHH
Q psy18175 98 LVRARKSN-IAPNFHFMEQLNSFEKELM 124 (132)
Q Consensus 98 ~v~~~Rp~-~~p~~~~~~qL~~~e~~l~ 124 (132)
.+|..|+. +..+..++..|.+....|.
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHHHh
Confidence 99999998 8999999999999887764
No 20
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.21 E-value=7.5e-11 Score=82.33 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=66.9
Q ss_pred CccccceeecCCCcc--------------eeehhhcc-------ccccCceEEEEEeccCCCCC----cccHHHHHHHHH
Q psy18175 2 APIAIRTYLSGLPDS--------------VCVLIKYQ-------ADLFSHTCQVFLIVCGWPKG----SKFNHSHCTFTE 56 (132)
Q Consensus 2 s~i~~~l~l~gi~~~--------------~~~~~~~~-------~~~~~~~~~~i~~~D~~~~~----~~~~~~~~~fi~ 56 (132)
+.|.+++|-||.+.. +++..+-. ....+.++.++++.....+. .+.+.++++.|.
T Consensus 8 ~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~il 87 (164)
T PF03162_consen 8 GMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIIL 87 (164)
T ss_dssp EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH
T ss_pred cCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHh
Confidence 568899999988877 33322211 12235578888887765522 445566666554
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHH
Q psy18175 57 EARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELM 124 (132)
Q Consensus 57 ~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~ 124 (132)
+. .+.+|||||..|..|||+++++|- +.+||++..+++..+.--.. ..+..-.+.++.|+..+.
T Consensus 88 d~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~~~~ 151 (164)
T PF03162_consen 88 DP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDVELV 151 (164)
T ss_dssp -G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT------
T ss_pred CC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCccee
Confidence 33 357999999999999999999998 78899999999999876322 445555566666665543
No 21
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.19 E-value=4e-10 Score=85.68 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=66.6
Q ss_pred ceEEEEEeccCCCCC-cccHHHHHHHHHHHHh---------------CCCcEEEEcCCCCchHHHHHHHHHHH-----hc
Q psy18175 30 HTCQVFLIVCGWPKG-SKFNHSHCTFTEEARS---------------QDTGVLVHCLAGVSRSVTITVAYLMS-----AL 88 (132)
Q Consensus 30 ~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~---------------~~~~VlVHC~~G~~RS~~~~~ayLm~-----~~ 88 (132)
....++...+|+... +......++|+..... ..++|+|||.+|+||||++++...+. ..
T Consensus 181 r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~ 260 (303)
T PHA02742 181 LDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERA 260 (303)
T ss_pred EEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcC
Confidence 346667777777666 5556666777765542 13699999999999999999887655 23
Q ss_pred CCCHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy18175 89 RLSLNDAFTLVRARKSNIAPNFHFMEQLN 117 (132)
Q Consensus 89 ~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~ 117 (132)
..+..+++..+|..||.+..+..++..+.
T Consensus 261 ~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y 289 (303)
T PHA02742 261 IIPLLSIVRDLRKQRHNCLSLPQQYIFCY 289 (303)
T ss_pred CCCHHHHHHHHHhhcccccCCHHHHHHHH
Confidence 56789999999999999999988766544
No 22
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.17 E-value=6e-10 Score=84.56 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=69.3
Q ss_pred CceEEEEEeccCCCCC-cccHHHHHHHHHHHHh------------CCCcEEEEcCCCCchHHHHHHHHHHH-----hcCC
Q psy18175 29 SHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARS------------QDTGVLVHCLAGVSRSVTITVAYLMS-----ALRL 90 (132)
Q Consensus 29 ~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~------------~~~~VlVHC~~G~~RS~~~~~ayLm~-----~~~~ 90 (132)
.....|+...+|++.+ +..-...++|+....+ ..++|+|||.+|+||||++++...+. ....
T Consensus 175 ~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~v 254 (298)
T PHA02740 175 AQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGML 254 (298)
T ss_pred cEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcc
Confidence 3567777778887776 5566677777654431 23699999999999999999877654 3467
Q ss_pred CHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy18175 91 SLNDAFTLVRARKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 91 ~~~~A~~~v~~~Rp~~~p~~~~~~qL~~ 118 (132)
++.+++..+|..|+....+..+...+..
T Consensus 255 di~~~V~~lR~qR~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 255 SIANALKKVRQKKYGCMNCLDDYVFCYH 282 (298)
T ss_pred cHHHHHHHHHhhCccccCCHHHHHHHHH
Confidence 8999999999999999999887766543
No 23
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.17 E-value=8.3e-11 Score=80.17 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=67.8
Q ss_pred eEEEEEeccCCCCC-------cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHH-HHHHhcCCCHHHHHHHHHhh
Q psy18175 31 TCQVFLIVCGWPKG-------SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVA-YLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 31 ~~~~i~~~D~~~~~-------~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~a-yLm~~~~~~~~~A~~~v~~~ 102 (132)
+.+.+-+.|..+++ ..+...+++|++++-+. .++||||.+|+|||++.++. -|.....++..++.+.++..
T Consensus 56 rhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~ 134 (172)
T COG5350 56 RHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRAL 134 (172)
T ss_pred hceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhc
Confidence 45666667766554 46789999999998876 88999999999999887644 45667789999999999999
Q ss_pred CCCCCCCHHHHH
Q psy18175 103 KSNIAPNFHFME 114 (132)
Q Consensus 103 Rp~~~p~~~~~~ 114 (132)
+|.+.||+..+.
T Consensus 135 sp~atPN~Rlia 146 (172)
T COG5350 135 SPYATPNPRLIA 146 (172)
T ss_pred CcccCCChhHHH
Confidence 999999987653
No 24
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.14 E-value=4.8e-10 Score=81.07 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=67.1
Q ss_pred eEEEEEeccCCCCC-cccHHHHHHHHHHHHhC----CCcEEEEcCCCCchHHHHHHHHHHHh-----cCCCHHHHHHHHH
Q psy18175 31 TCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQ----DTGVLVHCLAGVSRSVTITVAYLMSA-----LRLSLNDAFTLVR 100 (132)
Q Consensus 31 ~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~----~~~VlVHC~~G~~RS~~~~~ayLm~~-----~~~~~~~A~~~v~ 100 (132)
.+.++...++.... +.....+++|++...+. +++|+|||.+|.||||+++++.++.. ...+..+++..+|
T Consensus 134 ~v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR 213 (235)
T PF00102_consen 134 TVTHFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLR 213 (235)
T ss_dssp EEEEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHH
T ss_pred cccceeeeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHH
Confidence 34555555666444 44566666666665543 48999999999999999999987753 3578999999999
Q ss_pred hhCCCCCCCHHHHHHHHH
Q psy18175 101 ARKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 101 ~~Rp~~~p~~~~~~qL~~ 118 (132)
..||.+..+..++..+..
T Consensus 214 ~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 214 QQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp TTSTTSSSSHHHHHHHHH
T ss_pred hhCCCccCCHHHHHHHHH
Confidence 999999999988877654
No 25
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.13 E-value=1.7e-09 Score=73.15 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=66.9
Q ss_pred CccccceeecCCCcc--------------eeehhhcc----cc---------ccCceEEEEEeccCCCCCcccHHHHHHH
Q psy18175 2 APIAIRTYLSGLPDS--------------VCVLIKYQ----AD---------LFSHTCQVFLIVCGWPKGSKFNHSHCTF 54 (132)
Q Consensus 2 s~i~~~l~l~gi~~~--------------~~~~~~~~----~~---------~~~~~~~~i~~~D~~~~~~~~~~~~~~f 54 (132)
.+|.+++|.++..+. ++.....+ +. ..+..|.++|+..... +........++
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~~~v~~f~~~ 81 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TPDDVETFRAA 81 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CHHHHHHHHHH
Confidence 478888888855444 55533221 11 1366899999886432 22333333344
Q ss_pred HHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCC
Q psy18175 55 TEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIA 107 (132)
Q Consensus 55 i~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~ 107 (132)
++ ...++||+||..|. ||+++.+.++.. .|++.+++++..+..--...
T Consensus 82 ~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 82 IG---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HH---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 43 34689999999999 998888776655 68999999999987754443
No 26
>KOG2283|consensus
Probab=99.12 E-value=1.6e-10 Score=91.32 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=84.4
Q ss_pred ccccccCceEEEEEeccCCCCCcccHHHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhcCCC-HHHHHHHH
Q psy18175 23 YQADLFSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQD--TGVLVHCLAGVSRSVTITVAYLMSALRLS-LNDAFTLV 99 (132)
Q Consensus 23 ~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~~--~~VlVHC~~G~~RS~~~~~ayLm~~~~~~-~~~A~~~v 99 (132)
|....|.-++..++++|...|..+.+..+++-++.++... .-|.|||.+|.+|||++++||||.....+ +++|+.+.
T Consensus 66 yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~ 145 (434)
T KOG2283|consen 66 YDPSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYF 145 (434)
T ss_pred CCccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHH
Confidence 4445555677789999999999999999999999998864 46889999999999999999999987776 99999999
Q ss_pred HhhC---C--CCCCCHHHHHHHHHHHHHH
Q psy18175 100 RARK---S--NIAPNFHFMEQLNSFEKEL 123 (132)
Q Consensus 100 ~~~R---p--~~~p~~~~~~qL~~~e~~l 123 (132)
-.+| . ...-.+.+.+.+..|+..|
T Consensus 146 ~~kR~~~~~~~~~~~PSq~RYv~Y~~~~l 174 (434)
T KOG2283|consen 146 NEKRFDEGKSKGVTIPSQRRYVGYFSRVL 174 (434)
T ss_pred hhhhccccccCCccCchhhHHHHHHHHHh
Confidence 9999 3 2344667888888888743
No 27
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.12 E-value=1.5e-09 Score=83.23 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=70.1
Q ss_pred CceEEEEEeccCCCCC-cccHHHHHHHHHHHHh----------C----CCcEEEEcCCCCchHHHHHHHHHHH-----hc
Q psy18175 29 SHTCQVFLIVCGWPKG-SKFNHSHCTFTEEARS----------Q----DTGVLVHCLAGVSRSVTITVAYLMS-----AL 88 (132)
Q Consensus 29 ~~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~----------~----~~~VlVHC~~G~~RS~~~~~ayLm~-----~~ 88 (132)
...+.++...+|+... +......++|+....+ . .++|+|||.+|+||||++++...+. ..
T Consensus 199 ~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~ 278 (323)
T PHA02746 199 SREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEK 278 (323)
T ss_pred ceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcC
Confidence 3467777788887766 5556677777665432 1 2699999999999999999876544 34
Q ss_pred CCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy18175 89 RLSLNDAFTLVRARKSNIAPNFHFMEQLNSF 119 (132)
Q Consensus 89 ~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~ 119 (132)
..+..+++..+|..|+.+..+..+...+.+-
T Consensus 279 ~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~ 309 (323)
T PHA02746 279 EVCLGEIVLKIRKQRHSSVFLPEQYAFCYKA 309 (323)
T ss_pred CCCHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 6789999999999999999999888776643
No 28
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.07 E-value=3.7e-09 Score=80.73 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=65.2
Q ss_pred CceEEEEEeccCCCCC-cccHHHHHHHHH---HHHh-----------CCCcEEEEcCCCCchHHHHHHHHHHH-----hc
Q psy18175 29 SHTCQVFLIVCGWPKG-SKFNHSHCTFTE---EARS-----------QDTGVLVHCLAGVSRSVTITVAYLMS-----AL 88 (132)
Q Consensus 29 ~~~~~~i~~~D~~~~~-~~~~~~~~~fi~---~~~~-----------~~~~VlVHC~~G~~RS~~~~~ayLm~-----~~ 88 (132)
.....++...+|+..+ +......++||. ...+ ..++|+|||.+|+||||++++...+. ..
T Consensus 181 ~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~ 260 (312)
T PHA02747 181 SRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRK 260 (312)
T ss_pred ceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcC
Confidence 3456777777777655 444455555553 2221 12699999999999999999887544 34
Q ss_pred CCCHHHHHHHHHhhCCCCCCCHHHHHHH
Q psy18175 89 RLSLNDAFTLVRARKSNIAPNFHFMEQL 116 (132)
Q Consensus 89 ~~~~~~A~~~v~~~Rp~~~p~~~~~~qL 116 (132)
..+..+++..+|..|+.+..+..++..+
T Consensus 261 ~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 261 AICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 6789999999999999999999887777
No 29
>PHA02738 hypothetical protein; Provisional
Probab=99.04 E-value=3.1e-09 Score=81.42 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=65.1
Q ss_pred ceEEEEEeccCCCCC-cccHHHHHHHHHHHHh-----------------CCCcEEEEcCCCCchHHHHHHHHHHH-----
Q psy18175 30 HTCQVFLIVCGWPKG-SKFNHSHCTFTEEARS-----------------QDTGVLVHCLAGVSRSVTITVAYLMS----- 86 (132)
Q Consensus 30 ~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~-----------------~~~~VlVHC~~G~~RS~~~~~ayLm~----- 86 (132)
....|+...+|++.+ +..-...++|+....+ ..++|+|||.+|+||||++++...+.
T Consensus 177 r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~ 256 (320)
T PHA02738 177 QTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDA 256 (320)
T ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHh
Confidence 456677777777665 4455566666654332 13689999999999999988776544
Q ss_pred hcCCCHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy18175 87 ALRLSLNDAFTLVRARKSNIAPNFHFMEQLN 117 (132)
Q Consensus 87 ~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~ 117 (132)
....+..+++..+|..|+....+..++..+.
T Consensus 257 ~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y 287 (320)
T PHA02738 257 CATVSIPSIVSSIRNQRYYSLFIPFQYFFCY 287 (320)
T ss_pred cCCcCHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 3357799999999999999999998876544
No 30
>KOG0792|consensus
Probab=98.94 E-value=5.4e-09 Score=88.53 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=68.8
Q ss_pred ceEEEEEeccCCCCC-cccHHHHHHHHHHHHh---C-CCcEEEEcCCCCchHHHHHHHHHHH-----hcCCCHHHHHHHH
Q psy18175 30 HTCQVFLIVCGWPKG-SKFNHSHCTFTEEARS---Q-DTGVLVHCLAGVSRSVTITVAYLMS-----ALRLSLNDAFTLV 99 (132)
Q Consensus 30 ~~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~---~-~~~VlVHC~~G~~RS~~~~~ayLm~-----~~~~~~~~A~~~v 99 (132)
..+.|+...||++.+ .+..+..++|+++.+. . +.+|+|||.+|+||||+++++=+|. ...+.+-+-+..+
T Consensus 1026 R~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~m 1105 (1144)
T KOG0792|consen 1026 RTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTM 1105 (1144)
T ss_pred eeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 356677777777777 6666677777766543 3 5699999999999999988665444 2356789999999
Q ss_pred HhhCCCCCCCHHHHHHHHH
Q psy18175 100 RARKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 100 ~~~Rp~~~p~~~~~~qL~~ 118 (132)
|..|..+.++..++..+.+
T Consensus 1106 R~QR~~mVQT~~QYkFVye 1124 (1144)
T KOG0792|consen 1106 RDQRAMMVQTLSQYKFVYE 1124 (1144)
T ss_pred HHHHhhhccchHHhhHHHH
Confidence 9999999999998876653
No 31
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.93 E-value=2.2e-09 Score=73.84 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=46.3
Q ss_pred cccCceEEEEEeccCCCCCcccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH
Q psy18175 26 DLFSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS 86 (132)
Q Consensus 26 ~~~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~ 86 (132)
...+..|.++|+.|...|+.+.++..++|+... -.+..+.+||.+|.|||.+..+.|.|.
T Consensus 89 ~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 89 EGNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 455779999999999999999999999999998 667889999999999999988888664
No 32
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.85 E-value=1.4e-08 Score=75.05 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=72.8
Q ss_pred ccCceEEEEEeccCCCCCcccHHHHHHHHHHHHh---CCCcEEEEcCCCCchHHHHHHHHHHHhcC-----------C--
Q psy18175 27 LFSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARS---QDTGVLVHCLAGVSRSVTITVAYLMSALR-----------L-- 90 (132)
Q Consensus 27 ~~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~---~~~~VlVHC~~G~~RS~~~~~ayLm~~~~-----------~-- 90 (132)
......+|+....|.+...+.+....++++.... ++++++|||.||+||+|++++...+...- +
T Consensus 180 ~~~k~Ihhf~y~nW~D~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~ 259 (302)
T COG5599 180 GPPKKIHHFQYINWVDFNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQ 259 (302)
T ss_pred CCccEEEEEEecCccccCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhh
Confidence 4445667777666666554467777777777663 56899999999999999998877444321 1
Q ss_pred C-HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHH
Q psy18175 91 S-LNDAFTLVRARKSNIAPNFHFMEQLNSFEKELM 124 (132)
Q Consensus 91 ~-~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~ 124 (132)
+ ..+.+..+|++|..+..|..++..|.+.-..|.
T Consensus 260 D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 260 DLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 355678899999999999999999887777776
No 33
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.72 E-value=1.7e-07 Score=74.68 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=79.1
Q ss_pred ccCceEEEEEeccCCCCC---cccHHHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHhcCCC----------
Q psy18175 27 LFSHTCQVFLIVCGWPKG---SKFNHSHCTFTEEARSQ--DTGVLVHCLAGVSRSVTITVAYLMSALRLS---------- 91 (132)
Q Consensus 27 ~~~~~~~~i~~~D~~~~~---~~~~~~~~~fi~~~~~~--~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~---------- 91 (132)
.....++++|+..+.... ...++++++|+...+.. +.+|+|+|..|...|+.+++|.|+..+...
T Consensus 336 ~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~ 415 (451)
T PF04179_consen 336 PKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERP 415 (451)
T ss_pred CCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccC
Confidence 345578889998777665 67899999999999888 899999999999999999999999976532
Q ss_pred ------HHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy18175 92 ------LNDAFTLVRARKSNIAPNFHFMEQLNSF 119 (132)
Q Consensus 92 ------~~~A~~~v~~~Rp~~~p~~~~~~qL~~~ 119 (132)
..+-+..+-+.+|.++|+++.++++..|
T Consensus 416 ~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 416 SITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 3456888889999999999999999876
No 34
>PLN02727 NAD kinase
Probab=98.60 E-value=1.8e-07 Score=79.24 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=52.3
Q ss_pred cCceEEEEEeccCCCCCcccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCH
Q psy18175 28 FSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSL 92 (132)
Q Consensus 28 ~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~ 92 (132)
.+..|.++|+.+...++.+.+.++.+++++ ..+++||+||..|..|+|+|+++|+.+.-+...
T Consensus 309 ~GL~yVhIPVs~~~apt~EqVe~fa~~l~~--slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~ 371 (986)
T PLN02727 309 GKIEVVKIPVEVRTAPSAEQVEKFASLVSD--SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAE 371 (986)
T ss_pred cCCeEEEeecCCCCCCCHHHHHHHHHHHHh--hcCCCEEEECCCCCchHHHHHHHHHHHHcccch
Confidence 357899999988887777778888777755 346899999999999999999999998766543
No 35
>KOG0790|consensus
Probab=98.55 E-value=1.9e-07 Score=73.49 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=61.0
Q ss_pred eEEEEEeccCCCCC-cccHHHHHHHHHHHHh------CCCcEEEEcCCCCchHHHHHHHHHHH----hc----CCCHHHH
Q psy18175 31 TCQVFLIVCGWPKG-SKFNHSHCTFTEEARS------QDTGVLVHCLAGVSRSVTITVAYLMS----AL----RLSLNDA 95 (132)
Q Consensus 31 ~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~------~~~~VlVHC~~G~~RS~~~~~ayLm~----~~----~~~~~~A 95 (132)
.|+..-++|+..|. +-- +++|+++... .-++|.|||.+|+||+|++++.-++. .. .++....
T Consensus 416 ~yh~~tWPDHGvP~dPg~---vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~kt 492 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGG---VLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKT 492 (600)
T ss_pred hhheeecccCCCcCCccH---HHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHH
Confidence 35556677777666 322 4455554433 23799999999999999987665443 22 4678999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHH
Q psy18175 96 FTLVRARKSNIAPNFHFMEQLN 117 (132)
Q Consensus 96 ~~~v~~~Rp~~~p~~~~~~qL~ 117 (132)
+.+||+.|..+...+.+++.+.
T Consensus 493 IqmVRsqRSGmVQTEaQYkFiY 514 (600)
T KOG0790|consen 493 IQMVRSQRSGMVQTEAQYKFIY 514 (600)
T ss_pred HHHHHHHhcchhhhHHhHHHHH
Confidence 9999999999999988877654
No 36
>KOG0789|consensus
Probab=98.46 E-value=2.3e-06 Score=67.07 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=60.2
Q ss_pred eEEEEEeccCCCCC-cccHHHHHHHHHH----HHhCCCcEEEEcCCCCchHHHHHHHHH-HHh--c---CCCHHHHHHHH
Q psy18175 31 TCQVFLIVCGWPKG-SKFNHSHCTFTEE----ARSQDTGVLVHCLAGVSRSVTITVAYL-MSA--L---RLSLNDAFTLV 99 (132)
Q Consensus 31 ~~~~i~~~D~~~~~-~~~~~~~~~fi~~----~~~~~~~VlVHC~~G~~RS~~~~~ayL-m~~--~---~~~~~~A~~~v 99 (132)
.+.++-..+|+... ......++.++.. .....+++.|||.+|+||||++++... +.. . ..+..+.+..+
T Consensus 263 ~v~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~i 342 (415)
T KOG0789|consen 263 SVVHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREI 342 (415)
T ss_pred eEEEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 34445555554434 4556666666642 222358999999999999999996552 222 1 23488889999
Q ss_pred HhhCCCCCCCHHHHHHHHHH
Q psy18175 100 RARKSNIAPNFHFMEQLNSF 119 (132)
Q Consensus 100 ~~~Rp~~~p~~~~~~qL~~~ 119 (132)
|..|+.+..+..|+..+.+-
T Consensus 343 R~qR~~~vqt~~Qy~f~~~~ 362 (415)
T KOG0789|consen 343 RYQRPGAVQSPLQYLFIYAA 362 (415)
T ss_pred HHHhhhcccchhHHHHHHHH
Confidence 99999998888877655543
No 37
>KOG2386|consensus
Probab=98.44 E-value=1.3e-07 Score=73.65 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELM 124 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~ 124 (132)
...+-.|.+.....++=|+|||.+|++|++-++++|||...+|+..+|++.+...||...-...++..|...+....
T Consensus 110 v~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 110 VKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred HHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 33344455545556788999999999999999999999999999999999999999999888889988887665443
No 38
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.42 E-value=1.3e-06 Score=57.14 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=41.1
Q ss_pred CCccccceeecCCCcc--------------eeehhhccc-------------cccCceEEEEEeccCCCCCcccHHHHHH
Q psy18175 1 MAPIAIRTYLSGLPDS--------------VCVLIKYQA-------------DLFSHTCQVFLIVCGWPKGSKFNHSHCT 53 (132)
Q Consensus 1 ~s~i~~~l~l~gi~~~--------------~~~~~~~~~-------------~~~~~~~~~i~~~D~~~~~~~~~~~~~~ 53 (132)
|.+|.+.++++|.+.. +|...+-+. ...+..|.++|+.-.. .+. ..+..
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-~~~---~~v~~ 77 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA-ITE---EDVEA 77 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT---H---HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC-CCH---HHHHH
Confidence 4678888999866655 666444221 2335689999998643 223 33344
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHHHH
Q psy18175 54 FTEEARSQDTGVLVHCLAGVSRSVTITVA 82 (132)
Q Consensus 54 fi~~~~~~~~~VlVHC~~G~~RS~~~~~a 82 (132)
|.+...+.+++||+||..|. ||+++.+.
T Consensus 78 f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 78 FADALESLPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHHHHTTTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCCCh-hHHHHHHH
Confidence 44333445689999999999 98776544
No 39
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.30 E-value=4e-06 Score=62.22 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCH
Q psy18175 48 NHSHCTFTEEARSQD-TGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNF 110 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~-~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~ 110 (132)
.+....++.-....+ ++||+||.+|..|+|.+++.|+....+.....+-+++..-++......
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 444445555445554 899999999999999999999999877777788888888877665554
No 40
>KOG0791|consensus
Probab=98.23 E-value=1.2e-05 Score=61.96 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=64.9
Q ss_pred eEEEEEeccCCCCC-cccHHHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHH-HHhc----CCCHHHHHHHHHhhC
Q psy18175 31 TCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQ-DTGVLVHCLAGVSRSVTITVAYL-MSAL----RLSLNDAFTLVRARK 103 (132)
Q Consensus 31 ~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~-~~~VlVHC~~G~~RS~~~~~ayL-m~~~----~~~~~~A~~~v~~~R 103 (132)
.+++..++|...+. ...+.+...-..+.... +++++|||.+|+|||||+++.-- ++.. -.+.-..+..+|..|
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 45667788887776 55555555555555444 47999999999999999988773 3332 245677888899999
Q ss_pred CCCCCCHHHHHHHHH
Q psy18175 104 SNIAPNFHFMEQLNS 118 (132)
Q Consensus 104 p~~~p~~~~~~qL~~ 118 (132)
+.+.++..++-.|..
T Consensus 334 ~~mVqte~Qyvfl~~ 348 (374)
T KOG0791|consen 334 MLMVQTEDQYVFLHQ 348 (374)
T ss_pred ccccchHHHHHHHHH
Confidence 999999988877764
No 41
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.21 E-value=5.8e-06 Score=57.42 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=24.2
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHH
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFT 97 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~ 97 (132)
....++||+||++|..|||.+++..| ...|.+.++.++
T Consensus 121 ~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 121 ADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp H-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred ccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 33557999999999999977766654 556988877654
No 42
>KOG4228|consensus
Probab=97.90 E-value=5.4e-05 Score=65.24 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=63.8
Q ss_pred eEEEEEeccCCCCC-cccHHHHHHHHHHHHhCC----CcEEEEcCCCCchHHHHHHHHHH-----HhcCCCHHHHHHHHH
Q psy18175 31 TCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQD----TGVLVHCLAGVSRSVTITVAYLM-----SALRLSLNDAFTLVR 100 (132)
Q Consensus 31 ~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~----~~VlVHC~~G~~RS~~~~~ayLm-----~~~~~~~~~A~~~v~ 100 (132)
...++-+..|++.. ...-...+.|+++...-+ |+++|||.+|+||||+.++.--| .....+...-+..+|
T Consensus 694 ~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR 773 (1087)
T KOG4228|consen 694 EVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLR 773 (1087)
T ss_pred eeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHH
Confidence 45566666677666 556677889999988755 89999999999999997644333 344567778888999
Q ss_pred hhCCCCCCCHHHHHH
Q psy18175 101 ARKSNIAPNFHFMEQ 115 (132)
Q Consensus 101 ~~Rp~~~p~~~~~~q 115 (132)
+.|+.......+.-.
T Consensus 774 ~QR~~mVQt~eQYiF 788 (1087)
T KOG4228|consen 774 RQRNNMVQTEEQYIF 788 (1087)
T ss_pred hccccccccHHHHHH
Confidence 999988877765543
No 43
>KOG1572|consensus
Probab=97.80 E-value=0.00022 Score=52.25 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=63.6
Q ss_pred CccccceeecCCCccee--------------ehhh-ccc------cccCceEEEEEeccCCC----CC----cccHHHHH
Q psy18175 2 APIAIRTYLSGLPDSVC--------------VLIK-YQA------DLFSHTCQVFLIVCGWP----KG----SKFNHSHC 52 (132)
Q Consensus 2 s~i~~~l~l~gi~~~~~--------------~~~~-~~~------~~~~~~~~~i~~~D~~~----~~----~~~~~~~~ 52 (132)
|-+.+.+|-||.+...+ +..+ |+. ...+..+.++-+..... |. .+.+..++
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l 140 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKAL 140 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHH
Confidence 56778999999998833 2222 221 11234677777776652 22 33355555
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 53 TFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 53 ~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
.++ ....+.++||||..|..|+++++-+.- +.++|++.-.++.-+..
T Consensus 141 ~~l--ld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 141 KVL--LDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHH--hcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 552 233568999999999999999988865 66688876666555444
No 44
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.0011 Score=43.86 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=57.3
Q ss_pred CCccccceeecCCCcc--------------eeehhhccc-c------------ccCceEEEEEeccCCCCCcccHHHHHH
Q psy18175 1 MAPIAIRTYLSGLPDS--------------VCVLIKYQA-D------------LFSHTCQVFLIVCGWPKGSKFNHSHCT 53 (132)
Q Consensus 1 ~s~i~~~l~l~gi~~~--------------~~~~~~~~~-~------------~~~~~~~~i~~~D~~~~~~~~~~~~~~ 53 (132)
|.+|.+.++++|...+ +|...+.+. . ..+..|.++|+.-.... ...++ .
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT-~~dV~---~ 78 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGIT-EADVE---A 78 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCC-HHHHH---H
Confidence 4578888899877766 555333322 1 12347999998653322 11222 2
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHh
Q psy18175 54 FTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRA 101 (132)
Q Consensus 54 fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~ 101 (132)
|-+..-+.+++||.||+.|- ||.++-..-- ...||+-++...+=+.
T Consensus 79 f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a 124 (130)
T COG3453 79 FQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQA 124 (130)
T ss_pred HHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHh
Confidence 22222334699999999997 8855433333 5679998887766544
No 45
>KOG0793|consensus
Probab=97.71 E-value=0.00013 Score=60.63 Aligned_cols=89 Identities=16% Similarity=0.252 Sum_probs=60.3
Q ss_pred eEEEEEeccCCCCC-cccHHHHHHHHHHHHhC----CCcEEEEcCCCCchHHHHHHHHHHHh------cCCCHHHHHHHH
Q psy18175 31 TCQVFLIVCGWPKG-SKFNHSHCTFTEEARSQ----DTGVLVHCLAGVSRSVTITVAYLMSA------LRLSLNDAFTLV 99 (132)
Q Consensus 31 ~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~----~~~VlVHC~~G~~RS~~~~~ayLm~~------~~~~~~~A~~~v 99 (132)
+...|-+.-|+... ...-...++|-.+..+. ..+|+|||..|-||||+-++.-++.. ..++....++.+
T Consensus 891 TvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHl 970 (1004)
T KOG0793|consen 891 TVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHL 970 (1004)
T ss_pred eeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHH
Confidence 34445555555555 55556677777776652 35899999999999999666554442 135677789999
Q ss_pred HhhCCCCCCCHH-HHHHHHHH
Q psy18175 100 RARKSNIAPNFH-FMEQLNSF 119 (132)
Q Consensus 100 ~~~Rp~~~p~~~-~~~qL~~~ 119 (132)
|..||.+.-+.. |...|..-
T Consensus 971 RDQR~GmVaTkdQFef~l~aV 991 (1004)
T KOG0793|consen 971 RDQRPGMVATKDQFEFALTAV 991 (1004)
T ss_pred hhcCCcceeehhhhHHHHHHH
Confidence 999999876554 44444433
No 46
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.60 E-value=0.00025 Score=48.30 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHHHHhC---CCcEEEEcCCCCch----HHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC
Q psy18175 45 SKFNHSHCTFTEEARSQ---DTGVLVHCLAGVSR----SVTITVAYLMSALRLSLNDAFTLVRARKSNI 106 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~---~~~VlVHC~~G~~R----S~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~ 106 (132)
..++...+..+++.++. .++.+|||+..-.+ ++.++.+|+|...+|++++|+..+...-|..
T Consensus 46 L~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p~~ 114 (141)
T PF14671_consen 46 LAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQPPF 114 (141)
T ss_dssp HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT---
T ss_pred HHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCC
Confidence 44555666666666665 47888888876653 3778899999999999999999998875443
No 47
>KOG4228|consensus
Probab=97.47 E-value=0.00044 Score=59.84 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=61.7
Q ss_pred eEEEEEeccCCCCC-cccHHHHHHHHHHHH----hC--CCcEEEEcCCCCchHHHHHHHHHHHh-----cCCCHHHHHHH
Q psy18175 31 TCQVFLIVCGWPKG-SKFNHSHCTFTEEAR----SQ--DTGVLVHCLAGVSRSVTITVAYLMSA-----LRLSLNDAFTL 98 (132)
Q Consensus 31 ~~~~i~~~D~~~~~-~~~~~~~~~fi~~~~----~~--~~~VlVHC~~G~~RS~~~~~ayLm~~-----~~~~~~~A~~~ 98 (132)
.+..+...+++... .+.-...+.++.+.. +. .+++.|||.+|.|||++++++-++.. .-++.-.+++-
T Consensus 980 ~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~ 1059 (1087)
T KOG4228|consen 980 TVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKT 1059 (1087)
T ss_pred EEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhh
Confidence 45666777777665 444444444443322 22 48999999999999999876654432 24678889999
Q ss_pred HHhhCCCCCCCHHHHHHHHH
Q psy18175 99 VRARKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 99 v~~~Rp~~~p~~~~~~qL~~ 118 (132)
+|..||.+.-...+++.+.+
T Consensus 1060 Lr~~rp~mv~t~~QY~fcYd 1079 (1087)
T KOG4228|consen 1060 LRFQRPGMVDTSDQYQFCYD 1079 (1087)
T ss_pred hhhcCccccCcHHHHHHHHH
Confidence 99999999888877766654
No 48
>KOG4471|consensus
Probab=96.32 E-value=0.0076 Score=49.56 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCchHHHHHHH-HHHH
Q psy18175 51 HCTFTEEARSQDTGVLVHCLAGVSRSVTITVA-YLMS 86 (132)
Q Consensus 51 ~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~a-yLm~ 86 (132)
++...+..-..+.+|||||..|..||+-+++. -||.
T Consensus 363 a~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 363 AVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 33444455556689999999999999887644 3443
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=94.43 E-value=0.11 Score=40.66 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=17.0
Q ss_pred hCCCcEEEEcCCCCchHHHHHH
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITV 81 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ 81 (132)
.+|..|||||..|..||+-++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 5788999999999999966654
No 50
>KOG1089|consensus
Probab=93.37 E-value=0.16 Score=41.94 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=23.6
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHH
Q psy18175 50 SHCTFTEEARS-QDTGVLVHCLAGVSRSVTITV 81 (132)
Q Consensus 50 ~~~~fi~~~~~-~~~~VlVHC~~G~~RS~~~~~ 81 (132)
++..+|.+++. +|-+|||||..|..||.-++.
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 33445555666 557999999999999976663
No 51
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=90.14 E-value=1.7 Score=30.03 Aligned_cols=30 Identities=27% Similarity=0.207 Sum_probs=21.0
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
.++.+|++.|..|..||.. +++++...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3568999999998878865 44455555543
No 52
>PLN02160 thiosulfate sulfurtransferase
Probab=88.90 E-value=0.83 Score=30.65 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=19.7
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
...+++|++||..|. ||...+.. +...|.+
T Consensus 78 ~~~~~~IivyC~sG~-RS~~Aa~~--L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKATTE--LVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHHHHH--HHHcCCC
Confidence 356789999999994 88654333 3444543
No 53
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=88.49 E-value=0.79 Score=28.64 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=19.1
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
.++.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4567999999988 488543 3444 444553
No 54
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=88.46 E-value=0.6 Score=29.25 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=20.2
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHh
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLMSA 87 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm~~ 87 (132)
..++++++|+|..|. || ..++.+|...
T Consensus 58 ~~~~~~ivv~C~~G~-rS-~~aa~~L~~~ 84 (110)
T COG0607 58 LPDDDPIVVYCASGV-RS-AAAAAALKLA 84 (110)
T ss_pred cCCCCeEEEEeCCCC-Ch-HHHHHHHHHc
Confidence 566789999999998 88 5555555544
No 55
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=88.39 E-value=1.7 Score=27.47 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
.+.+|+|+|..|. ||. .++.. +...|.
T Consensus 65 ~~~~ivv~C~~G~-rs~-~a~~~-L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSI-IGAQS-LINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHH-HHHHH-HHHCCC
Confidence 3578999999997 773 33333 344555
No 56
>PRK01415 hypothetical protein; Validated
Probab=86.89 E-value=1.7 Score=32.39 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
.++++|+++|+.|. || ..++++|.. .|.+
T Consensus 169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RC-EKSTSLLKS-IGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HH-HHHHHHHHH-cCCC
Confidence 45689999999996 88 556666654 3543
No 57
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=86.49 E-value=1.4 Score=33.88 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
++++|+|+|..|. || ..+++||.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs-~~aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RC-EKASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HH-HHHHHHHHH-cCC
Confidence 4689999999987 88 455666655 454
No 58
>PRK05320 rhodanese superfamily protein; Provisional
Probab=86.43 E-value=1.6 Score=32.57 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
++++|+++|..|. || ..++.+|... |.
T Consensus 174 kdk~IvvyC~~G~-Rs-~~Aa~~L~~~-Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RC-EKAAIHMQEV-GI 200 (257)
T ss_pred CCCeEEEECCCCH-HH-HHHHHHHHHc-CC
Confidence 5689999999996 88 5566666543 44
No 59
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=85.64 E-value=3.2 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=18.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
.+.+|+++|..| .||. .++.+|.. .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~-~~~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSM-QVAQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHH-HHHHHHHH-cCCc
Confidence 468999999998 4874 33444444 4554
No 60
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=84.60 E-value=3.1 Score=27.26 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=21.1
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
+.++.+|+|+|..|-.||...+ +++...|.+
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCCc
Confidence 4456899999986555776444 666766653
No 61
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=84.10 E-value=1.4 Score=27.35 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=18.4
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
..+++|+|+|..|. ||.. ++..| ...|.
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCc
Confidence 45689999999995 7743 33433 44454
No 62
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=84.07 E-value=2.5 Score=23.84 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 77 VTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 77 ~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
..-+.+.||..+|++.++|+.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45677889999999999999999876
No 63
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=83.99 E-value=2.9 Score=26.87 Aligned_cols=43 Identities=14% Similarity=-0.055 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 47 FNHSHCTFTEEA-RSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 47 ~~~~~~~fi~~~-~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
...++.+++... ...+.+|+++|..| +++++.++..| ...|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 63 SPEEFAELLGSLGISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 334444444332 34568999999998 55555554444 444654
No 64
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=81.70 E-value=3.3 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=18.8
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
...+.+|+++|..|. ||...+ .+| ...|.
T Consensus 61 ~~~~~~ivv~C~~G~-rs~~aa-~~L-~~~G~ 89 (117)
T cd01522 61 VGKDRPVLLLCRSGN-RSIAAA-EAA-AQAGF 89 (117)
T ss_pred CCCCCeEEEEcCCCc-cHHHHH-HHH-HHCCC
Confidence 346688999999985 886543 333 44454
No 65
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=81.20 E-value=5.4 Score=24.69 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=29.8
Q ss_pred EEEEeccCCCCCcccHHH----HHHHHHHHHhCCCcEEEEcCCCCchHHHHHH---HHHHHhcCCC
Q psy18175 33 QVFLIVCGWPKGSKFNHS----HCTFTEEARSQDTGVLVHCLAGVSRSVTITV---AYLMSALRLS 91 (132)
Q Consensus 33 ~~i~~~D~~~~~~~~~~~----~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~---ayLm~~~~~~ 91 (132)
.++|.............. ...........+..|+++|..|. |+...+. +|.+...|.+
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 667776652222222222 22333333345678999997666 4444333 3445555653
No 66
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=81.02 E-value=2.9 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
++.+|+++|..|. ||.. ++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 3578999999987 7743 34444 55555
No 67
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=81.01 E-value=3.5 Score=25.29 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
+.+|+|+|..|...++..++. .+...|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~-~L~~~G~ 77 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAAR-RLSELGY 77 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHH-HHHHcCc
Confidence 578999999986443344443 3444454
No 68
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=80.77 E-value=1.4 Score=33.24 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=17.4
Q ss_pred hCCC---cEEEEcCCCCchHHHHH
Q psy18175 60 SQDT---GVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 60 ~~~~---~VlVHC~~G~~RS~~~~ 80 (132)
++|+ .|.|=|++|..||++++
T Consensus 238 ~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 238 KEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred hcCCeEEEEEEccCCCccchHHHH
Confidence 3555 57799999999999987
No 69
>smart00400 ZnF_CHCC zinc finger.
Probab=80.70 E-value=2.2 Score=23.89 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=23.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHH
Q psy18175 66 LVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLV 99 (132)
Q Consensus 66 lVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v 99 (132)
..||.+ -|+.+-+ +.++|...+++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 478874 4566544 6667888899999999875
No 70
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=79.86 E-value=3.3 Score=31.55 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.4
Q ss_pred cEEEEcCCCCchHHHHHHH
Q psy18175 64 GVLVHCLAGVSRSVTITVA 82 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~~~a 82 (132)
.|-|-|+.|..||++++=.
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 6889999999999998733
No 71
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=76.52 E-value=4.9 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=18.2
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
..+.+|+|+|..| +||.. ++.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4567899999877 47744 34444 44454
No 72
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=76.38 E-value=7.9 Score=27.74 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLM 85 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm 85 (132)
.+.+.++.+.+.+++.++++|++. |.|+|++++.-+-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 356888889999999999999886 78888777655544
No 73
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=76.21 E-value=3.7 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLA 71 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~ 71 (132)
...++.+++++...|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 15 LAAACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 347899999999999999999954
No 74
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=76.12 E-value=4.9 Score=30.56 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHH----HhCCC---cEEEEcCCCCchHHHHHHH
Q psy18175 46 KFNHSHCTFTEEA----RSQDT---GVLVHCLAGVSRSVTITVA 82 (132)
Q Consensus 46 ~~~~~~~~fi~~~----~~~~~---~VlVHC~~G~~RS~~~~~a 82 (132)
++++...++++.+ .++|+ .|-|-|+.|..||++++=.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAER 265 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHHH
Confidence 4455555555443 33454 4889999999999988743
No 75
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=76.07 E-value=4.6 Score=30.30 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=17.4
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
..+++|+++|..|. ||+. +..+| ...|.
T Consensus 229 ~~~~~ii~yC~~G~-~A~~-~~~~l-~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAAV-VVLAL-ATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HHHH-HHHHH-HHcCC
Confidence 34678999999988 5533 33333 44454
No 76
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=76.00 E-value=3.3 Score=31.02 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=20.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCCHHHHHHH
Q psy18175 70 LAGVSRSVTITVAYLMSALRLSLNDAFTL 98 (132)
Q Consensus 70 ~~G~~RS~~~~~ayLm~~~~~~~~~A~~~ 98 (132)
--|+||||+.+.+-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 5699999998888655 47777777544
No 77
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=75.95 E-value=3.8 Score=25.84 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=24.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q psy18175 66 LVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 66 lVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~R 103 (132)
..||.+ -|.+|-+ +.++|...++++.+|++.+.+.-
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHHh
Confidence 689984 6677654 66679999999999999997753
No 78
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=75.89 E-value=4.4 Score=27.43 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAG 72 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G 72 (132)
.+...-++..++++.++|.+|+|+|..-
T Consensus 12 ~~~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 12 SALEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4567779999999999999999999553
No 79
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=74.56 E-value=5.1 Score=26.93 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLA 71 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~ 71 (132)
...+++.++++.++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 577899999999999999999965
No 80
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=74.37 E-value=8.4 Score=32.46 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=18.2
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
..+++|.++|..|. ||+.+. ++++..|.
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~~--~~L~~lG~ 248 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFTY--LVAKALGY 248 (610)
T ss_pred CCCCCEEEECCCCh-HHHHHH--HHHHHcCC
Confidence 45679999999996 665433 33444453
No 81
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=73.76 E-value=5.5 Score=27.50 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAG 72 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G 72 (132)
.+.+..+++.++++..+|.+|+|+|...
T Consensus 12 ~~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 12 ELLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred ChHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 6778889999999999999999999654
No 82
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=73.26 E-value=4.3 Score=24.86 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCchHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~ 80 (132)
++|++.|..|+|=|..+.
T Consensus 1 ~kilvvCg~G~gtS~ml~ 18 (87)
T cd05567 1 KKIVFACDAGMGSSAMGA 18 (87)
T ss_pred CEEEEECCCCccHHHHHH
Confidence 479999999998764433
No 83
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=73.18 E-value=3.8 Score=31.06 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=20.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCCHHHHHHH
Q psy18175 70 LAGVSRSVTITVAYLMSALRLSLNDAFTL 98 (132)
Q Consensus 70 ~~G~~RS~~~~~ayLm~~~~~~~~~A~~~ 98 (132)
--|+||||+.+.+-|+. |++-++|.++
T Consensus 165 iPGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 165 IPGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred ccCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 35999999988886554 7777777543
No 84
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=72.86 E-value=12 Score=23.77 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCchHHHHH
Q psy18175 62 DTGVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~ 80 (132)
..+|++||..|-.||+..+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4689999998766875443
No 85
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=72.57 E-value=3.7 Score=25.84 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCchHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~ 80 (132)
.+||+-|.+|++ |..++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 689999999998 44443
No 86
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=72.21 E-value=5.6 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=18.6
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
+..+.+|+|+|..| .||.. ++.++...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 34568999999987 47643 3344455553
No 87
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=72.02 E-value=2.3 Score=27.11 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=8.7
Q ss_pred CcEEEEcCCC
Q psy18175 63 TGVLVHCLAG 72 (132)
Q Consensus 63 ~~VlVHC~~G 72 (132)
.+|||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5899999877
No 88
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=71.78 E-value=4.3 Score=30.38 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCCHHHHHH
Q psy18175 70 LAGVSRSVTITVAYLMSALRLSLNDAFT 97 (132)
Q Consensus 70 ~~G~~RS~~~~~ayLm~~~~~~~~~A~~ 97 (132)
--|+||||+.+.+-|+. |++-++|.+
T Consensus 159 iPGiSRSG~TI~a~l~~--G~~r~~Aa~ 184 (255)
T TIGR00753 159 IPGVSRSGSTISGGLFI--GLNRKAAAE 184 (255)
T ss_pred ccCCCCchHHHHHHHHc--CCCHHHHHH
Confidence 35999999988886553 777777644
No 89
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=71.31 E-value=7.7 Score=24.01 Aligned_cols=26 Identities=0% Similarity=0.038 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
+.+|+++|..|. ||..++. .+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~--~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA--FLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH--HHHHcCC
Confidence 578999999987 7654333 3444454
No 90
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=71.29 E-value=4.5 Score=30.49 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=19.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCCHHHHHHH
Q psy18175 70 LAGVSRSVTITVAYLMSALRLSLNDAFTL 98 (132)
Q Consensus 70 ~~G~~RS~~~~~ayLm~~~~~~~~~A~~~ 98 (132)
--|+||||+.+.+-|+ .|++-++|.++
T Consensus 163 iPGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 163 IPGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 3699999998888655 47777776543
No 91
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=71.07 E-value=9.5 Score=30.10 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=10.7
Q ss_pred CCCcEEEEcCCCC
Q psy18175 61 QDTGVLVHCLAGV 73 (132)
Q Consensus 61 ~~~~VlVHC~~G~ 73 (132)
.|..||.||.+|.
T Consensus 166 dg~~ILThcnsg~ 178 (363)
T PRK05772 166 DGDTVLTQCNAGG 178 (363)
T ss_pred CCCEEEEecCCcc
Confidence 5678999999873
No 92
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=70.93 E-value=11 Score=25.14 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=31.6
Q ss_pred EEeccCCCCC--cccHHHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHhcC
Q psy18175 35 FLIVCGWPKG--SKFNHSHCTFTEEARSQDTG-VLVHCLAGVSRSVTITVAYLMSALR 89 (132)
Q Consensus 35 i~~~D~~~~~--~~~~~~~~~fi~~~~~~~~~-VlVHC~~G~~RS~~~~~ayLm~~~~ 89 (132)
+|++|...+. ...++.+.+.|.+..++++. .+--|-+|--++-++.++|.+.-+|
T Consensus 59 ~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 59 LKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 3444544433 33344444555555555442 3444556655888888999888776
No 93
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=70.90 E-value=11 Score=24.05 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=13.4
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q psy18175 61 QDTGVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~ 80 (132)
.+.+|+++|..| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 346799999988 4664443
No 94
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=70.85 E-value=13 Score=23.55 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=18.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
.+.+|+++|..|. ||..+ ++.+...|.+
T Consensus 77 ~~~~iv~yc~~g~-~s~~~--~~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL--LLALELLGYK 104 (118)
T ss_pred CCCCEEEECCcHH-HHHHH--HHHHHHcCCC
Confidence 5679999999875 66443 3444555553
No 95
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=70.52 E-value=11 Score=27.63 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=37.0
Q ss_pred EEeccCCCCC--cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcC
Q psy18175 35 FLIVCGWPKG--SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALR 89 (132)
Q Consensus 35 i~~~D~~~~~--~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~ 89 (132)
.|++|...+. ....+.+.+.|.+..+..+..+.-|-+|-=++-++.++|.+.-+|
T Consensus 82 ~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~g 138 (224)
T PF09623_consen 82 LPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFG 138 (224)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcC
Confidence 3444444433 444555666666666665666666777777899999999888777
No 96
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=70.43 E-value=18 Score=22.89 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
.+.+|+++|..|. ||... +..| ...|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~~L-~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KDIL-LDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HHHH-HHcCC
Confidence 4468999999995 77544 3333 33454
No 97
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=68.62 E-value=6 Score=25.77 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=16.5
Q ss_pred hCCCcEEEEcC-CCCchHHHHHHHHHHH
Q psy18175 60 SQDTGVLVHCL-AGVSRSVTITVAYLMS 86 (132)
Q Consensus 60 ~~~~~VlVHC~-~G~~RS~~~~~ayLm~ 86 (132)
.++.+|++||. .| .||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 45678999997 55 58754 4445544
No 98
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=68.28 E-value=17 Score=21.47 Aligned_cols=29 Identities=34% Similarity=0.596 Sum_probs=17.3
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
..+.+|+|+|..|. |+. .+++.+...|.+
T Consensus 54 ~~~~~iv~~c~~g~-~a~--~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSA--KAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHH--HHHHHHHHcCCC
Confidence 35679999996654 663 334444555543
No 99
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=67.71 E-value=28 Score=21.89 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCH---------HHHHHHHHhhCCCCC----CCHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSL---------NDAFTLVRARKSNIA----PNFH 111 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~---------~~A~~~v~~~Rp~~~----p~~~ 111 (132)
...++.+.++|+...+.|.++++.-+.+ +||..-.+..| ...|.+. .-+..++++..+... -+++
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~~ 90 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSDG 90 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-HH
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCHH
Confidence 4567889999999999988888877664 47777777776 5567653 336777777544332 2555
Q ss_pred HHHHHH
Q psy18175 112 FMEQLN 117 (132)
Q Consensus 112 ~~~qL~ 117 (132)
+.+.|.
T Consensus 91 l~~~l~ 96 (101)
T PF13344_consen 91 LREELR 96 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 100
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=67.59 E-value=10 Score=23.41 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=18.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
++.+|+++|..|. ||.. +++++...|.+
T Consensus 65 ~~~~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 4679999999986 6643 34445555653
No 101
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=67.47 E-value=14 Score=28.78 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=10.2
Q ss_pred CCC----cEEEEcCCC
Q psy18175 61 QDT----GVLVHCLAG 72 (132)
Q Consensus 61 ~~~----~VlVHC~~G 72 (132)
.|. .||.||..|
T Consensus 142 dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 142 KGVAAPLRVLTHCNTG 157 (331)
T ss_pred CCCCCCceEEeecCCc
Confidence 566 799999998
No 102
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=66.45 E-value=14 Score=28.88 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=13.7
Q ss_pred CCCcEEEEcCCCCchHH
Q psy18175 61 QDTGVLVHCLAGVSRSV 77 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~ 77 (132)
.|..||-||..|..+++
T Consensus 147 ~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 147 DGDTVLTHCNAGRLACV 163 (339)
T ss_pred CCCEEEEecCCcccccc
Confidence 56789999999977653
No 103
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=65.74 E-value=9.7 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=13.5
Q ss_pred HhCCCcEEEEcCCCCchHH
Q psy18175 59 RSQDTGVLVHCLAGVSRSV 77 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~ 77 (132)
...+++|+++|..|. ||.
T Consensus 51 ~~~~~~iv~~c~~g~-~s~ 68 (99)
T cd01527 51 LVGANAIIFHCRSGM-RTQ 68 (99)
T ss_pred CCCCCcEEEEeCCCc-hHH
Confidence 345679999999986 554
No 104
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=65.59 E-value=8.7 Score=24.79 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=18.5
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
..+++|+++|..|. ||...+ .+ +...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~~-L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-RK-LKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-HH-HHHcCC
Confidence 45689999999995 875333 33 344455
No 105
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=64.83 E-value=21 Score=27.53 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
+.+|+|+|..|-.||..++ +++...|+
T Consensus 74 ~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 3459999976556886553 33344454
No 106
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=64.50 E-value=23 Score=27.72 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
.+.+|+|+|..|-.||..++ +++...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 56799999976666987654 33344453
No 107
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=64.49 E-value=24 Score=21.99 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 52 CTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 52 ~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
-+++.. +..+.+++|+|..|. ||.. ++. .++..|.+
T Consensus 49 ~~~~~~-~~~~~~ivv~c~~g~-~s~~-a~~-~L~~~G~~ 84 (108)
T PRK00162 49 GAFMRQ-ADFDTPVMVMCYHGN-SSQG-AAQ-YLLQQGFD 84 (108)
T ss_pred HHHHHh-cCCCCCEEEEeCCCC-CHHH-HHH-HHHHCCch
Confidence 344443 345688999999886 6533 222 34444543
No 108
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=63.92 E-value=16 Score=23.05 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHH
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVA 82 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~a 82 (132)
.+.+|++||..+-.||...+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~ 82 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARK 82 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHH
Confidence 3578999998554687665433
No 109
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=63.89 E-value=20 Score=27.61 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=29.2
Q ss_pred CcccHHHHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHh
Q psy18175 44 GSKFNHSHCTFTEEARS--QDTGVLVHCLAGVSRSVTITVAYLMSA 87 (132)
Q Consensus 44 ~~~~~~~~~~fi~~~~~--~~~~VlVHC~~G~~RS~~~~~ayLm~~ 87 (132)
+...|.+.-+++.+..+ ++++|+..|+.|+ |. =-+.+||...
T Consensus 152 ~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~~~ 195 (308)
T COG1054 152 DIETFREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMKEN 195 (308)
T ss_pred ChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHHHh
Confidence 35566666677766544 4689999999999 77 5556665543
No 110
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=63.87 E-value=53 Score=25.09 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEcCCCCc----hHHHHHHHHHHHhcCCC-HHHHHHHHHhhCCCC----CCCHHHHHHH
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHCLAGVS----RSVTITVAYLMSALRLS-LNDAFTLVRARKSNI----APNFHFMEQL 116 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~----RS~~~~~ayLm~~~~~~-~~~A~~~v~~~Rp~~----~p~~~~~~qL 116 (132)
+.++...+.+.+.+..||+++.|+-.+.. +.+..+..|.--...++ ..+....+....-.+ ...+.+.+-|
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl 232 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTL 232 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHH
Confidence 34666777788888899999999999988 67777777765555566 566555555553332 4566778888
Q ss_pred HHHHHHHHHhh
Q psy18175 117 NSFEKELMEAR 127 (132)
Q Consensus 117 ~~~e~~l~~~~ 127 (132)
..|-.++....
T Consensus 233 ~~W~~~f~~~~ 243 (283)
T COG2230 233 RLWRERFEANR 243 (283)
T ss_pred HHHHHHHHHHH
Confidence 88877776554
No 111
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=63.41 E-value=54 Score=24.46 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHH-----------------------HHHH------HHhcCCCHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTG-VLVHCLAGVSRSVTIT-----------------------VAYL------MSALRLSLND 94 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~-VlVHC~~G~~RS~~~~-----------------------~ayL------m~~~~~~~~~ 94 (132)
.+...+..+++++..++|.. +.||...|+|-|--.+ .+++ |...|.++++
T Consensus 61 ~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s~~e 140 (275)
T TIGR00762 61 QPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGKSLEE 140 (275)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45566677777777777644 4588888887542222 1111 2244678888
Q ss_pred HHHHHHhhCCCC
Q psy18175 95 AFTLVRARKSNI 106 (132)
Q Consensus 95 A~~~v~~~Rp~~ 106 (132)
.++.+...|...
T Consensus 141 I~~~l~~~~~~~ 152 (275)
T TIGR00762 141 ILAKLEELRERT 152 (275)
T ss_pred HHHHHHHHHhhc
Confidence 888887776553
No 112
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=62.70 E-value=21 Score=25.88 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=19.9
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHh
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLMSA 87 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm~~ 87 (132)
....++|+| .|+|||+-++=++-|+-
T Consensus 36 ~~~~gkv~V---~G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 36 LECKGKVFV---TGVGKSGLIGKKFAARL 61 (202)
T ss_pred HhcCCcEEE---EcCChhHHHHHHHHHHH
Confidence 334678888 59999999987777763
No 113
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=62.56 E-value=8.7 Score=23.23 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchHHHH
Q psy18175 64 GVLVHCLAGVSRSVTI 79 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~ 79 (132)
+|++-|.+|+|=|..+
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 5899999999877444
No 114
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=62.39 E-value=7.7 Score=24.94 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=11.3
Q ss_pred CcEEEEcCCCCchH
Q psy18175 63 TGVLVHCLAGVSRS 76 (132)
Q Consensus 63 ~~VlVHC~~G~~RS 76 (132)
++||+-|.+|+|=|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 36999999999444
No 115
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=62.27 E-value=17 Score=21.85 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=17.6
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
...+.+|+|+|..|. ||.. + +..+...|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~-a-~~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ-L-AQALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH-H-HHHHHHcCC
Confidence 346689999999665 5533 3 333444454
No 116
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=61.95 E-value=9.8 Score=29.21 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=12.9
Q ss_pred HhCCCcEEEEcCCCCchH
Q psy18175 59 RSQDTGVLVHCLAGVSRS 76 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS 76 (132)
+..+++|+++|..|. ||
T Consensus 266 i~~~~~iv~yC~sG~-~A 282 (320)
T PLN02723 266 ISLDSPIVASCGTGV-TA 282 (320)
T ss_pred CCCCCCEEEECCcHH-HH
Confidence 345679999999876 54
No 117
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=61.54 E-value=10 Score=27.29 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhC
Q psy18175 80 TVAYLMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 80 ~~ayLm~~~~~~~~~A~~~v~~~R 103 (132)
+=+.||..+|++-++|++.+|..-
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~~A 173 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRRTA 173 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456789999999999999999863
No 118
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=59.94 E-value=11 Score=28.56 Aligned_cols=25 Identities=32% Similarity=0.214 Sum_probs=17.3
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHH
Q psy18175 71 AGVSRSVTITVAYLMSALRLSLNDAFT 97 (132)
Q Consensus 71 ~G~~RS~~~~~ayLm~~~~~~~~~A~~ 97 (132)
-|.||||+.+.+-|.. |.+-++|.+
T Consensus 165 PG~SRSGaTI~~~lll--G~~r~~Aae 189 (270)
T COG1968 165 PGTSRSGATISGGLLL--GLSREAAAE 189 (270)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHH
Confidence 5899999888776543 666666544
No 119
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=58.80 E-value=27 Score=27.32 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=12.0
Q ss_pred CCCcEEEEcCCCCch
Q psy18175 61 QDTGVLVHCLAGVSR 75 (132)
Q Consensus 61 ~~~~VlVHC~~G~~R 75 (132)
.|..||-||..|.-.
T Consensus 146 ~g~~ILThc~sg~la 160 (344)
T PRK05720 146 KGQGILTHCNAGWLA 160 (344)
T ss_pred CCCEEEEecCCCcce
Confidence 567899999998643
No 120
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=58.41 E-value=30 Score=19.10 Aligned_cols=31 Identities=10% Similarity=0.279 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q psy18175 72 GVSRSVTITVAYLMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 72 G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~R 103 (132)
|++|. ++.++.=+...|.+++.--..|++.|
T Consensus 18 gLd~e-tL~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 18 GLDRE-TLSICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCHH-HHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 88998 66666656677999986666666654
No 121
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=57.96 E-value=24 Score=27.88 Aligned_cols=11 Identities=55% Similarity=0.884 Sum_probs=8.9
Q ss_pred CcEEEEcCCCC
Q psy18175 63 TGVLVHCLAGV 73 (132)
Q Consensus 63 ~~VlVHC~~G~ 73 (132)
+.||-||++|-
T Consensus 161 g~ILTHcnaG~ 171 (356)
T PRK08334 161 GNVLTHCNAGS 171 (356)
T ss_pred CCEEEecCcch
Confidence 34999999876
No 122
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=57.61 E-value=15 Score=31.02 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHH---hcCCCHHHHHHHHHh
Q psy18175 63 TGVLVHCLAGVSRSVTITVAYLMS---ALRLSLNDAFTLVRA 101 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ayLm~---~~~~~~~~A~~~v~~ 101 (132)
.+..|||+.|. ++++.++||+ ..+++.++|++.++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 78999999998 5788888865 457889999876654
No 123
>PRK05569 flavodoxin; Provisional
Probab=57.58 E-value=30 Score=22.71 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCc-hHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHH
Q psy18175 47 FNHSHCTFTEEARSQDTGVLVHCLAGVS-RSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELM 124 (132)
Q Consensus 47 ~~~~~~~fi~~~~~~~~~VlVHC~~G~~-RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~ 124 (132)
.+..+++.+....-+|++|.+-++.|.+ ..+.-.+.-++...|++.-.. ..-.-.|+..-++++.+|-+.|.
T Consensus 68 ~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~------~~~~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 68 EMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD------LAVNESPNKEELNSAKELGKKLA 140 (141)
T ss_pred HHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee------EEEccCCCHHHHHHHHHHHHHHh
Confidence 3444444443333367899999998876 232222334445556654222 11124589999999998877764
No 124
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=57.28 E-value=46 Score=26.92 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEcC----------------CCCchHHHHHHHHHHHhcCCC-HH----HHHHHHHh----
Q psy18175 48 NHSHCTFTEEARSQD-TGVLVHCL----------------AGVSRSVTITVAYLMSALRLS-LN----DAFTLVRA---- 101 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~-~~VlVHC~----------------~G~~RS~~~~~ayLm~~~~~~-~~----~A~~~v~~---- 101 (132)
.++.++-|++..+.| .=+-|||. .=+||-|++.++|++....-+ +. +-++..++
T Consensus 142 ~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVt 221 (431)
T PRK13352 142 EDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVT 221 (431)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCee
Confidence 455667777777776 45779994 226899999999999887655 44 44444444
Q ss_pred ------hCCCCCC---CHHHHHHHHHH
Q psy18175 102 ------RKSNIAP---NFHFMEQLNSF 119 (132)
Q Consensus 102 ------~Rp~~~p---~~~~~~qL~~~ 119 (132)
.||.... ...++..|..+
T Consensus 222 lSLGDglRPG~i~Da~D~aQi~El~~l 248 (431)
T PRK13352 222 LSLGDGLRPGCIADATDRAQIQELITL 248 (431)
T ss_pred eeccCCcCCCccccCCcHHHHHHHHHH
Confidence 3777533 34455555544
No 125
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=56.92 E-value=15 Score=28.01 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=15.9
Q ss_pred HHhCCCcEEEEcCCCCchHHH
Q psy18175 58 ARSQDTGVLVHCLAGVSRSVT 78 (132)
Q Consensus 58 ~~~~~~~VlVHC~~G~~RS~~ 78 (132)
-+...+.|.++|..|+.=|.+
T Consensus 230 gi~~~~~vI~yCgsG~~As~~ 250 (285)
T COG2897 230 GIDPDKEVIVYCGSGVRASVT 250 (285)
T ss_pred CCCCCCCEEEEcCCchHHHHH
Confidence 355678999999999954444
No 126
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.32 E-value=19 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCc
Q psy18175 47 FNHSHCTFTEEARSQDTGVLVHCLAGVS 74 (132)
Q Consensus 47 ~~~~~~~fi~~~~~~~~~VlVHC~~G~~ 74 (132)
.-+++++.|.+..+..++|+.|-..|-.
T Consensus 9 aT~aAl~Li~~l~~~hgpvmFHQSGGCC 36 (116)
T COG3564 9 ATPAALDLIAELQAEHGPVMFHQSGGCC 36 (116)
T ss_pred cCHHHHHHHHHHHHhcCCEEEeccCCcc
Confidence 3467899999999999999999877764
No 127
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=56.31 E-value=21 Score=22.50 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=18.6
Q ss_pred HhCCCcEEEEcCCCCc-hHHHHHHHHHHHhcCC
Q psy18175 59 RSQDTGVLVHCLAGVS-RSVTITVAYLMSALRL 90 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~-RS~~~~~ayLm~~~~~ 90 (132)
+..+.+|+|+|..|.+ ||..++ ..+...|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a--~~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAA--LKLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHH--HHHHHcCC
Confidence 3456899999999863 554333 33344454
No 128
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=55.51 E-value=9.3 Score=25.18 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.1
Q ss_pred CCCchHHHHHHHHHHHhcC
Q psy18175 71 AGVSRSVTITVAYLMSALR 89 (132)
Q Consensus 71 ~G~~RS~~~~~ayLm~~~~ 89 (132)
.|++|+.+.+++||+...-
T Consensus 23 lgi~R~vA~tlv~L~~~~E 41 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDE 41 (124)
T ss_pred cCCCchHHHHHHHHhcCcc
Confidence 5899999999999998543
No 129
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=55.51 E-value=31 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCchHHHH-HHHHHHHhcCCC
Q psy18175 63 TGVLVHCLAGVSRSVTI-TVAYLMSALRLS 91 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~-~~ayLm~~~~~~ 91 (132)
.+||+-|.+|+|=|-.+ -+--.....|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 57999999999887444 222233555554
No 130
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=55.34 E-value=41 Score=25.41 Aligned_cols=40 Identities=5% Similarity=0.056 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHH
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLM 85 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm 85 (132)
+.=.+.++.|.+...+|+.+++.--.|.|.|.++.++.+.
T Consensus 11 ~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00488 11 PIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHH
Confidence 3344556667777778899999999999999887766553
No 131
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=55.34 E-value=41 Score=25.41 Aligned_cols=40 Identities=5% Similarity=0.056 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHH
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLM 85 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm 85 (132)
+.=.+.++.|.+...+|+.+++.--.|.|.|.++.++.+.
T Consensus 11 ~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00489 11 PIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHH
Confidence 3344556667777778899999999999999887766553
No 132
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=54.67 E-value=15 Score=29.01 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 63 TGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
.+|+|||..|. ||. .++.+|.. .|.
T Consensus 333 ~~Ivv~C~sG~-RS~-~Aa~~L~~-~G~ 357 (370)
T PRK05600 333 DNVVVYCASGI-RSA-DFIEKYSH-LGH 357 (370)
T ss_pred CcEEEECCCCh-hHH-HHHHHHHH-cCC
Confidence 38999999996 885 44555543 354
No 133
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=54.59 E-value=28 Score=21.90 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCchHHHHHHHH--HHHhcCCC
Q psy18175 63 TGVLVHCLAGVSRSVTITVAY--LMSALRLS 91 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ay--Lm~~~~~~ 91 (132)
.+||+-|.+|+|=|-.+.... +++..|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 479999999999996665543 55666664
No 134
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=54.33 E-value=50 Score=26.61 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHhCC-CcEEEEcC----------------CCCchHHHHHHHHHHHhcCCC-H----HHHHHHHHh---
Q psy18175 47 FNHSHCTFTEEARSQD-TGVLVHCL----------------AGVSRSVTITVAYLMSALRLS-L----NDAFTLVRA--- 101 (132)
Q Consensus 47 ~~~~~~~fi~~~~~~~-~~VlVHC~----------------~G~~RS~~~~~ayLm~~~~~~-~----~~A~~~v~~--- 101 (132)
..++.++-|+++.+.| .=+-|||. .=+||.|++.++|++....-+ + ++-++..++
T Consensus 137 t~d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDV 216 (420)
T PF01964_consen 137 TEDDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDV 216 (420)
T ss_dssp -HHHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCe
Confidence 3566777788887777 45779995 226899999999999987765 3 444444443
Q ss_pred -------hCCCCCC---CHHHHHHHHHH
Q psy18175 102 -------RKSNIAP---NFHFMEQLNSF 119 (132)
Q Consensus 102 -------~Rp~~~p---~~~~~~qL~~~ 119 (132)
.||.... ...++..|..+
T Consensus 217 tLSLGDglRPG~i~Da~D~aQi~EL~~l 244 (420)
T PF01964_consen 217 TLSLGDGLRPGCIADATDRAQIQELIIL 244 (420)
T ss_dssp EEEE--TT--SSGGGTT-HHHHHHHHHH
T ss_pred eEecccccCCCCcCCCCcHHHHHHHHHH
Confidence 3776533 34455555544
No 135
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=53.06 E-value=34 Score=29.95 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=33.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHH----hcCCCHHHHHHHHHhhC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMS----ALRLSLNDAFTLVRARK 103 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~----~~~~~~~~A~~~v~~~R 103 (132)
-+.++.||...|. |++++.-||+ ..|+++++|++.+++.-
T Consensus 295 l~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~ 338 (794)
T TIGR02093 295 FPKKVAIQLNDTH---PALAIPELMRLLIDEEGMDWDEAWDITTKTF 338 (794)
T ss_pred CCcceEEEecCCc---hHHHHHHHHHHHHHhcCCCHHHHHHHHHhhe
Confidence 3579999999999 6888888886 35999999999998874
No 136
>PRK13938 phosphoheptose isomerase; Provisional
Probab=52.27 E-value=45 Score=23.81 Aligned_cols=39 Identities=8% Similarity=-0.039 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS 86 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~ 86 (132)
.+.+.++.+-+.+.+.+|++|++. |.|+|+.++..+-++
T Consensus 28 ~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 28 LEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 566778888888889999999885 677776666555443
No 137
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=52.13 E-value=62 Score=26.10 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEcC-----------C-----CCchHHHHHHHHHHHhcCCC-HHHHHHH
Q psy18175 48 NHSHCTFTEEARSQD-TGVLVHCL-----------A-----GVSRSVTITVAYLMSALRLS-LNDAFTL 98 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~-~~VlVHC~-----------~-----G~~RS~~~~~ayLm~~~~~~-~~~A~~~ 98 (132)
.++.++-|++..+.| .=+-|||. . =+||-|++.++|++....-+ +.+-+.+
T Consensus 139 ~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~ 207 (423)
T TIGR00190 139 EDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDY 207 (423)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHH
Confidence 455677777777777 45779995 1 26899999999999987665 4443333
No 138
>PRK07411 hypothetical protein; Validated
Probab=51.81 E-value=22 Score=28.17 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
++.+|+|+|..|. ||.. ++.+ ++..|.+
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~-L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGI-LKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHH-HHHcCCC
Confidence 4678999999887 8844 4333 4555654
No 139
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=51.43 E-value=35 Score=25.37 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHH------HHHhcCCCHHHHHHHHHh
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAY------LMSALRLSLNDAFTLVRA 101 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ay------Lm~~~~~~~~~A~~~v~~ 101 (132)
.+..-...+++-+.+.+.+|.|||........-++-.| ++..+.-+.+.|-.+++.
T Consensus 111 ~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 111 RQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 34555666777777788999999987555444444332 111123356777777664
No 140
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=51.25 E-value=14 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=17.9
Q ss_pred cEEEEcCCCCchHHHHHHH--HHHHhcCC
Q psy18175 64 GVLVHCLAGVSRSVTITVA--YLMSALRL 90 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~~~a--yLm~~~~~ 90 (132)
+||+-|.+|++=|-.++.. =++...|.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi 32 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNI 32 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCC
Confidence 6999999999877554443 23344444
No 141
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=50.98 E-value=88 Score=22.26 Aligned_cols=54 Identities=13% Similarity=-0.024 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCC-----CchHHHHHHHHHHHhcCCCHHHHHHHHHh
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAG-----VSRSVTITVAYLMSALRLSLNDAFTLVRA 101 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G-----~~RS~~~~~ayLm~~~~~~~~~A~~~v~~ 101 (132)
......-+.+..+.|.+|.+-..++ .+......+..++...|+++++|++.+..
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~ 280 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATS 280 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTH
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHH
Confidence 5666777888899999999998887 44555666666777789999999987643
No 142
>KOG1529|consensus
Probab=50.80 E-value=23 Score=27.05 Aligned_cols=54 Identities=15% Similarity=0.053 Sum_probs=34.0
Q ss_pred EEEEeccCCCCC-ccc-HHHHHH-HHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH
Q psy18175 33 QVFLIVCGWPKG-SKF-NHSHCT-FTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS 86 (132)
Q Consensus 33 ~~i~~~D~~~~~-~~~-~~~~~~-fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~ 86 (132)
.++|+.+...++ ... -+++.. |-.+.+..+++|.+-|..|++-|...+++++.-
T Consensus 204 ~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g 260 (286)
T KOG1529|consen 204 INFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG 260 (286)
T ss_pred ccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC
Confidence 457777766666 211 233332 333455567899999999998886666666543
No 143
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=50.71 E-value=42 Score=23.96 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=28.1
Q ss_pred HHHHHHhCCCcEEEEcCCCCchH-----HHHHHHHHHHhcCCCHH
Q psy18175 54 FTEEARSQDTGVLVHCLAGVSRS-----VTITVAYLMSALRLSLN 93 (132)
Q Consensus 54 fi~~~~~~~~~VlVHC~~G~~RS-----~~~~~ayLm~~~~~~~~ 93 (132)
+...+.+.+.....+...|.|++ ++++++|||...+-+++
T Consensus 23 l~~aa~kl~~~a~~~~~~~~~t~~lqWias~aAi~Llildrtnwk 67 (187)
T PF05562_consen 23 LGMAAKKLASHAICLGSLGFGTSFLQWIASIAAIYLLILDRTNWK 67 (187)
T ss_pred HHHHHHhhhcceeeeccccccHHHHHHHHHHHHHHHHhccCccch
Confidence 33444555566777778899888 67899999987774444
No 144
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=48.72 E-value=40 Score=26.16 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=27.7
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHh
Q psy18175 69 CLAGVSRSVTITVAYLMSALRLSLNDAFTLVRA 101 (132)
Q Consensus 69 C~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~ 101 (132)
+..|.+|. +.=++.+++...+|-+||++.|+.
T Consensus 283 ~KfG~~~~-~~~~s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 283 LKFGFGRA-TDHASIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hhcCCCcC-chHHHHHHHcCCCCHHHHHHHHHH
Confidence 46888887 666778899999999999999999
No 145
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=48.61 E-value=43 Score=29.32 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHH----hcCCCHHHHHHHHHhhC
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMS----ALRLSLNDAFTLVRARK 103 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~----~~~~~~~~A~~~v~~~R 103 (132)
+.++.||...|. |++++.=||+ ..|+++++|++.+++.-
T Consensus 301 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~ 343 (798)
T PRK14985 301 PDYEVIQLNDTH---PTIAIPELLRVLLDEHQLSWDDAWAITSKTF 343 (798)
T ss_pred CCCcEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhe
Confidence 478899999998 6788887776 35999999999998873
No 146
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=48.48 E-value=39 Score=23.89 Aligned_cols=32 Identities=13% Similarity=-0.008 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTI 79 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~ 79 (132)
.+.++++++.|.+++.+|++|++- |.|.|+.+
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~ 58 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCD 58 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHH
Confidence 567999999999999999988774 45555443
No 147
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=48.30 E-value=26 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchHHHH
Q psy18175 52 CTFTEEARSQDTGVLVHCLAGVSRSVTI 79 (132)
Q Consensus 52 ~~fi~~~~~~~~~VlVHC~~G~~RS~~~ 79 (132)
++++..+...+++|+|++..|..=.|++
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L 31 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRV 31 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEE
Confidence 4678888888899999999998655443
No 148
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=48.22 E-value=51 Score=24.02 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHHHH----HHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 48 NHSHCTFT----EEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 48 ~~~~~~fi----~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
.+.+.++| .+.....+..+--|-+|--++.++.++|.+.-+|-.
T Consensus 99 n~~aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~gr~ 146 (209)
T TIGR02584 99 NEAAANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFGRE 146 (209)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhCCc
Confidence 44455554 444444566777777887788888888888876644
No 149
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=47.75 E-value=52 Score=21.75 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Q psy18175 94 DAFTLVRARKSNIAPNFHFMEQLNSFEKELME 125 (132)
Q Consensus 94 ~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~ 125 (132)
+.++.+.++-| +.....|+..|.+|--.+..
T Consensus 73 ~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 73 KLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcC
Confidence 34555566666 87789999999999766643
No 150
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=47.57 E-value=33 Score=27.97 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=18.8
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
..+++++++|..|. || +.++.+|. ..|.
T Consensus 447 ~~~~~iivyC~~G~-rS-~~aa~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MS-RLQALYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HH-HHHHHHHH-HcCC
Confidence 45678999999997 77 44444443 3454
No 151
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.34 E-value=83 Score=25.19 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchH---HHHHHHHHHHhcCCCHHHHHHHHHh
Q psy18175 52 CTFTEEARSQDTGVLVHCLAGVSRS---VTITVAYLMSALRLSLNDAFTLVRA 101 (132)
Q Consensus 52 ~~fi~~~~~~~~~VlVHC~~G~~RS---~~~~~ayLm~~~~~~~~~A~~~v~~ 101 (132)
.+-+..+++.|-+|.+.+..|.+.| -.+.+.++++. +|+++||+.-+..
T Consensus 296 ~~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~-gmtp~EaL~a~T~ 347 (406)
T COG1228 296 YKPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVRL-GMTPEEALKAATI 347 (406)
T ss_pred chhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 3447778889999999999999984 33444444444 6999999987653
No 152
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=47.22 E-value=50 Score=28.97 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHH----hcCCCHHHHHHHHHhhC
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMS----ALRLSLNDAFTLVRARK 103 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~----~~~~~~~~A~~~v~~~R 103 (132)
+.++.||-..|. |++++.-||+ ..|+++++|++.+++.-
T Consensus 299 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~w~~Aw~i~~~~~ 341 (797)
T cd04300 299 PDKVAIQLNDTH---PALAIPELMRILVDEEGLDWDEAWDITTKTF 341 (797)
T ss_pred CCceEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHhhe
Confidence 479999999999 6888888886 46999999999998873
No 153
>PHA02540 61 DNA primase; Provisional
Probab=46.70 E-value=44 Score=26.19 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=28.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q psy18175 64 GVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~R 103 (132)
+...||.. -|-++ =++.|||.+.++++.||++.+-...
T Consensus 53 ~~~yhCFg-CGa~G-d~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 53 GGVFKCHN-CGYHR-PFGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred ceEEEecC-CCCCC-CHHHHHHHhcCCChHHHHHHHHHHh
Confidence 67899964 33343 4678999999999999999665554
No 154
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=46.24 E-value=21 Score=26.21 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHHHHhCC-CcEEEEcCC-CCchHHHHHHHHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQD-TGVLVHCLA-GVSRSVTITVAYLMS 86 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~-~~VlVHC~~-G~~RS~~~~~ayLm~ 86 (132)
..+++.....++-+.++| ++|+|||.. |..=+|.-+..||-.
T Consensus 42 HSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~ 85 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEE 85 (223)
T ss_dssp S--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHH
Confidence 456666667777777777 679999965 777777767766544
No 155
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=45.80 E-value=26 Score=28.02 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=27.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 66 LVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 66 lVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
..||. |-|.+|- ++.++|...++++.+|++.+...
T Consensus 55 ~~~Cf-~Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~ 89 (415)
T TIGR01391 55 FYHCF-GCGAGGD-AIKFLMEIEGISFVEAVEELAKR 89 (415)
T ss_pred cEEEC-CCCCCCC-HHHHHHHHhCCCHHHHHHHHHHH
Confidence 48887 3444554 47888999999999999999775
No 156
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=45.73 E-value=20 Score=22.44 Aligned_cols=13 Identities=46% Similarity=0.769 Sum_probs=11.4
Q ss_pred cEEEEcCCCCchH
Q psy18175 64 GVLVHCLAGVSRS 76 (132)
Q Consensus 64 ~VlVHC~~G~~RS 76 (132)
+||+-|.+|++=|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 5899999999766
No 157
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.33 E-value=18 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchHHHHHHHHH---HHhcCC
Q psy18175 64 GVLVHCLAGVSRSVTITVAYL---MSALRL 90 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~~~ayL---m~~~~~ 90 (132)
+|++-|.+| -|.++++--+ +...|+
T Consensus 2 ~Ill~C~~G--aSSs~la~km~~~a~~~gi 29 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANALNKGAKERGV 29 (99)
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHHHCCC
Confidence 589999777 5555655443 334455
No 158
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=44.67 E-value=15 Score=28.61 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=21.1
Q ss_pred hCCCcEEEEcCCCCchH----HHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRS----VTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS----~~~~~ayLm~~~~~ 90 (132)
..|.+||=||++|-==+ .++..-+.++..|.
T Consensus 148 ~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~gk 182 (346)
T COG0182 148 PDGDTVLTHCNAGALATVGYGTALGVIRSAHEEGK 182 (346)
T ss_pred ccCCeEEeeecCCceeecCccchHHHHHHHHHCCC
Confidence 35788999999985322 35556677776663
No 159
>PRK13936 phosphoheptose isomerase; Provisional
Probab=43.84 E-value=74 Score=22.51 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHH
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITV 81 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ 81 (132)
+.+.++++.+-+.+.++++|++- |.|.|+.++.
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~ 59 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQ 59 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHH
Confidence 44667888888888898998887 7777766553
No 160
>PF12643 MazG-like: MazG-like family
Probab=43.70 E-value=84 Score=19.95 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH-hcCCC---HHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHHHHH
Q psy18175 76 SVTITVAYLMS-ALRLS---LNDAFTLVRARKSNIAPN-FHFMEQLNSFEKELME 125 (132)
Q Consensus 76 S~~~~~ayLm~-~~~~~---~~~A~~~v~~~Rp~~~p~-~~~~~qL~~~e~~l~~ 125 (132)
+..++.+|+|. ..|.+ +++++..=-.....-.|. .....-|..+++.|.+
T Consensus 42 Advii~~ylLa~rLGid~~~lD~~i~~KL~~~~~k~~~~Ek~~gdls~l~~~l~~ 96 (98)
T PF12643_consen 42 ADVIIYCYLLADRLGIDFRELDEIIKEKLKKNIEKYPVLEKWYGDLSKLEQHLKK 96 (98)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccccchHHHHhccHHHHHHHHhc
Confidence 45788888666 56999 555543322222233444 4455556666666643
No 161
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=43.37 E-value=53 Score=23.20 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCcEEEEcC--CCCchHHHHHHHHHHHhcC-------------------------------CCHHHHHH
Q psy18175 51 HCTFTEEARSQDTGVLVHCL--AGVSRSVTITVAYLMSALR-------------------------------LSLNDAFT 97 (132)
Q Consensus 51 ~~~fi~~~~~~~~~VlVHC~--~G~~RS~~~~~ayLm~~~~-------------------------------~~~~~A~~ 97 (132)
.-+.++...+.|+.|+||-. .|+|+- -.++-||....+ .+++.+++
T Consensus 33 l~~~v~~~~~~gK~vfVHiDli~Gl~~D-~~~i~~L~~~~~~dGIISTk~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~ 111 (175)
T PF04309_consen 33 LKDIVKRLKAAGKKVFVHIDLIEGLSRD-EAGIEYLKEYGKPDGIISTKSNLIKRAKKLGLLTIQRIFLIDSSALETGIK 111 (175)
T ss_dssp HHHHHHHHHHTT-EEEEECCGEETB-SS-HHHHHHHHHTT--SEEEESSHHHHHHHHHTT-EEEEEEE-SSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEehhcCCCCCC-HHHHHHHHHcCCCcEEEeCCHHHHHHHHHcCCEEEEEeeeecHHHHHHHHH
Confidence 44566667788899999986 588877 667777777542 24777888
Q ss_pred HHHhhCCCC
Q psy18175 98 LVRARKSNI 106 (132)
Q Consensus 98 ~v~~~Rp~~ 106 (132)
.+++.+|.+
T Consensus 112 ~i~~~~PD~ 120 (175)
T PF04309_consen 112 QIEQSKPDA 120 (175)
T ss_dssp HHHHHT-SE
T ss_pred HHhhcCCCE
Confidence 888888774
No 162
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=43.15 E-value=82 Score=19.68 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcC
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCL 70 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~ 70 (132)
+.++.+.++.+.+.|-++.+||.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 78889999999999999999996
No 163
>PRK15043 transcriptional regulator MirA; Provisional
Probab=42.87 E-value=64 Score=24.05 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=45.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC------------CCCCHHHHHHHHHHHHH
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSN------------IAPNFHFMEQLNSFEKE 122 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~------------~~p~~~~~~qL~~~e~~ 122 (132)
.|+++|+=|..|-.+....+.|++....|+..+--=.-+...||. ..+++.+.+||..|-..
T Consensus 161 ~~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~ 234 (243)
T PRK15043 161 QGKDALVVGWNIHDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQ 234 (243)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999999999988887543222223344454 35788899999998653
No 164
>PRK02947 hypothetical protein; Provisional
Probab=42.86 E-value=49 Score=24.38 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=25.9
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~ 80 (132)
.+.++++++.+.+.+.++++|++. |.|.|..++
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA 55 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHILA 55 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH
Confidence 466888999999999999999876 666665554
No 165
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.94 E-value=26 Score=22.56 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=31.1
Q ss_pred CcEEEEcCCCCchHHHHHHH-HHHHhcC-------CCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHh
Q psy18175 63 TGVLVHCLAGVSRSVTITVA-YLMSALR-------LSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEA 126 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~a-yLm~~~~-------~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~ 126 (132)
.++++-|.+|.|-|-.+-=. -.....| ++-.++-+++... -.+-..|...-++..+++...++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~-DvvLlGPQv~y~~~~~~~~~~~~ 72 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNA-DVVLLGPQVRYMLKQLKEAAEEK 72 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcC-CEEEEChHHHHHHHHHHHHhccc
Confidence 47999999999877322110 0111223 3444555555422 12233444444555665555443
No 166
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=41.91 E-value=31 Score=26.92 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCcEEEEcCCCC
Q psy18175 53 TFTEEARSQDTGVLVHCLAGV 73 (132)
Q Consensus 53 ~fi~~~~~~~~~VlVHC~~G~ 73 (132)
++-.+.+..|..||-||..|-
T Consensus 128 ~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 128 EYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHcCCCCEEEEeCCCCc
Confidence 333344456788999999885
No 167
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=41.77 E-value=23 Score=26.77 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=17.6
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHH
Q psy18175 54 FTEEARSQDTGVLVHCLAGVSRSV 77 (132)
Q Consensus 54 fi~~~~~~~~~VlVHC~~G~~RS~ 77 (132)
.+.+.+++.++++|-|.+|+|.+.
T Consensus 11 ~l~~~i~~~~~ivvlTGAGiS~~S 34 (285)
T PRK05333 11 ALQDFVERHPRLFVLTGAGISTDS 34 (285)
T ss_pred HHHHHHHhCCcEEEEeCCcccccc
Confidence 344444556789999999999773
No 168
>PF14746 WASH-7_C: WASH complex subunit 7, C-terminal
Probab=41.70 E-value=67 Score=22.64 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhc-CCCHHHHHHHHHhh
Q psy18175 47 FNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSAL-RLSLNDAFTLVRAR 102 (132)
Q Consensus 47 ~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~-~~~~~~A~~~v~~~ 102 (132)
+++..+.-=++..++++.=.+.|..|. ++.+||+..-. +++.-+++.+.++.
T Consensus 59 ~ve~~i~~Kekl~Kk~k~~~~ftDDGF----a~GvAyiLklLdQ~~~FdsLhWF~Sv 111 (170)
T PF14746_consen 59 YVEYMIQCKEKLFKKNKEGASFTDDGF----AMGVAYILKLLDQYDEFDSLHWFESV 111 (170)
T ss_pred HHHHHHHhHHHHHhcCCCCCeeecccH----HHHHHHHHHHhcchhhhhhcccHHHH
Confidence 333333333444445555667799999 99999988854 33344444444333
No 169
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=41.60 E-value=23 Score=20.38 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHHHH
Q psy18175 64 GVLVHCLAGVSRSVTITV 81 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~~~ 81 (132)
++++-|..|.+-|..+..
T Consensus 1 ~il~vc~~G~~~s~~l~~ 18 (84)
T cd00133 1 KILVVCGSGIGSSSMLAE 18 (84)
T ss_pred CEEEECCCcHhHHHHHHH
Confidence 589999999987744443
No 170
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=41.15 E-value=41 Score=29.38 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCchHHHHHHHH----HHHhcCCCHHHHHHHHHhh
Q psy18175 63 TGVLVHCLAGVSRSVTITVAY----LMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ay----Lm~~~~~~~~~A~~~v~~~ 102 (132)
.+..|||+.|. ++++..- +|...+++.++|++.++..
T Consensus 248 ~pdViH~ND~H---aal~~lE~~R~ll~~~g~~~~~A~e~vr~~ 288 (778)
T cd04299 248 KPTVYHMNEGH---AAFLGLERIRELMAEGGLSFDEALEAVRAS 288 (778)
T ss_pred CCeEEEeCCCc---HHHHHHHHHHHHHHHcCCCHHHHHHhhCCe
Confidence 68999999999 3444442 4555589999999887644
No 171
>PRK14986 glycogen phosphorylase; Provisional
Probab=41.02 E-value=62 Score=28.47 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHH----hcCCCHHHHHHHHHhhC
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLMS----ALRLSLNDAFTLVRARK 103 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm~----~~~~~~~~A~~~v~~~R 103 (132)
-+.++.||-..|. |++++.-||+ ..|+++++|++.+++.-
T Consensus 311 l~~~v~ihlNDtH---pa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~ 354 (815)
T PRK14986 311 LADKIAIHLNDTH---PVLSIPELMRLLIDEHKFSWDDAFEVCCQVF 354 (815)
T ss_pred CCcccEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHhhE
Confidence 3578999999999 6888888886 44999999999998873
No 172
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=40.02 E-value=90 Score=25.88 Aligned_cols=55 Identities=13% Similarity=-0.062 Sum_probs=36.0
Q ss_pred EeccCCCCC-cccHHHHHHHHHHHHhCCCcEEEEcCCCC-chHHHHHHHHHHHhcCC
Q psy18175 36 LIVCGWPKG-SKFNHSHCTFTEEARSQDTGVLVHCLAGV-SRSVTITVAYLMSALRL 90 (132)
Q Consensus 36 ~~~D~~~~~-~~~~~~~~~fi~~~~~~~~~VlVHC~~G~-~RS~~~~~ayLm~~~~~ 90 (132)
.+.+...|. .+.++++++.|.++++++++|+|.+..-. |=++++++...+...|.
T Consensus 27 ~l~~l~~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~ 83 (539)
T TIGR00644 27 DLIDLPDPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGV 83 (539)
T ss_pred chhhcCChhhcCCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCC
Confidence 334444555 78899999999999999999888665432 34444444444554453
No 173
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=39.93 E-value=76 Score=20.72 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSV 77 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~ 77 (132)
.+.+..+.+-+.++...+.+|+|..-.|.|++-
T Consensus 4 S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~ 36 (138)
T PF14532_consen 4 SPAMRRLRRQLERLAKSSSPVLITGEPGTGKSL 36 (138)
T ss_dssp CHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHH
Confidence 345677788888888888999999999999995
No 174
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=39.90 E-value=35 Score=21.81 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhcCCC-HHHHHHHHHhh
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMSALRLS-LNDAFTLVRAR 102 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~-~~~A~~~v~~~ 102 (132)
.++|+=||..| +-++-||+.+...+ -.||+..-...
T Consensus 24 ~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~L 60 (99)
T cd04445 24 DKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASSL 60 (99)
T ss_pred hhccccceecc-----cHHHHHHHHhhcccchHHHHHHHHHH
Confidence 47899999877 46889999988886 88887765543
No 175
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=39.39 E-value=82 Score=24.69 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=18.4
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
.++.+|+++|..|. ||.. + +.++...|.
T Consensus 55 ~~~~~IvvyC~~G~-rs~~-a-a~~L~~~G~ 82 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH-A-AATLRELGY 82 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH-H-HHHHHHcCC
Confidence 45689999999885 7753 3 334444454
No 176
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=39.18 E-value=76 Score=23.66 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=18.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHhh
Q psy18175 81 VAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 81 ~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
+..||+..|++.++|++.++..
T Consensus 232 V~vl~~~~g~s~~eA~~~~~~~ 253 (303)
T cd00687 232 VKVLAEEHGLSLEEAISVVRDM 253 (303)
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 4457888899999999998776
No 177
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=39.17 E-value=90 Score=19.00 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCCchH--HHHHHHH-HHHhcCCCHHHHHHHHHhhCCC
Q psy18175 71 AGVSRS--VTITVAY-LMSALRLSLNDAFTLVRARKSN 105 (132)
Q Consensus 71 ~G~~RS--~~~~~ay-Lm~~~~~~~~~A~~~v~~~Rp~ 105 (132)
.|+++. ..+--|| ++...+.++++|++.+++..+.
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~ 63 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPD 63 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Confidence 345544 2344566 4445688999999999997665
No 178
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=38.94 E-value=1e+02 Score=22.07 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCchH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVSRS 76 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS 76 (132)
+..+.+.++.+.+.|-++.+||..|-+-+
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~i~ 210 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESSIG 210 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCHHH
Confidence 66777888888888999999997664433
No 179
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=38.51 E-value=71 Score=18.17 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhC
Q psy18175 79 ITVAYLMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 79 ~~~ayLm~~~~~~~~~A~~~v~~~R 103 (132)
.++.-+..+.+++.++|++++++..
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~~~ 30 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKRSG 30 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcC
Confidence 3555567788999999999998653
No 180
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=38.37 E-value=61 Score=25.94 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=39.1
Q ss_pred cccCceEEEEEeccCCCCCcccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC
Q psy18175 26 DLFSHTCQVFLIVCGWPKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSN 105 (132)
Q Consensus 26 ~~~~~~~~~i~~~D~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~ 105 (132)
..++..|..+|+.+....|.+.+.+++. .+-+-|+|.=+.|.+.-+++.+. .++++++.+|+.+|.
T Consensus 125 ~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~------~~tk~v~IQRSrGYs~R~sl~i~--------~I~~~i~~vk~~~p~ 190 (403)
T PF06838_consen 125 KEFGIKYREVPLTEDGTIDWEAIKKALK------PNTKMVLIQRSRGYSWRPSLTIE--------EIKEIIKFVKEINPD 190 (403)
T ss_dssp GGGT-EEEE--B-TTSSB-HHHHHHHHH------TTEEEEEEE-S-TTSSS----HH--------HHHHHHHHHHHH-TT
T ss_pred HHhCceeEEEeecCCCCcCHHHHHHhhc------cCceEEEEecCCCCCCCCCCCHH--------HHHHHHHHHHhhCCC
Confidence 4567789999998877666443333332 23367889999999866565554 378899999999997
Q ss_pred CC
Q psy18175 106 IA 107 (132)
Q Consensus 106 ~~ 107 (132)
+.
T Consensus 191 ~i 192 (403)
T PF06838_consen 191 VI 192 (403)
T ss_dssp SE
T ss_pred eE
Confidence 63
No 181
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=37.62 E-value=83 Score=23.47 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=21.5
Q ss_pred HHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 50 SHCTFTEEA-RSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 50 ~~~~fi~~~-~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
...+++.+. +..+.+|+|+|..|. ++++ .+++++...|.
T Consensus 74 ~~~~~~~~~Gi~~d~~VVvyc~~~~-~~a~-~~~~~l~~~G~ 113 (281)
T PRK11493 74 TFAVAMRELGVNQDKHLVVYDEGNL-FSAP-RAWWMLRTFGV 113 (281)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCC-chHH-HHHHHHHHhcC
Confidence 344444443 345679999998764 4322 23344455554
No 182
>PF15195 TMEM210: TMEM210 family
Probab=37.08 E-value=59 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=17.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 66 LVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 66 lVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
|.-|..|+||-+.+++......-+.+
T Consensus 2 yCeCsLGLSREALIALlVVLAgv~as 27 (116)
T PF15195_consen 2 YCECSLGLSREALIALLVVLAGVSAS 27 (116)
T ss_pred cceeecccCHHHHHHHHHHHhccchh
Confidence 46799999999877766544433433
No 183
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=37.07 E-value=1e+02 Score=22.31 Aligned_cols=73 Identities=19% Similarity=0.068 Sum_probs=49.1
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC--H-------HHHHHHHHhhCCC----CCCCHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS--L-------NDAFTLVRARKSN----IAPNFH 111 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~--~-------~~A~~~v~~~Rp~----~~p~~~ 111 (132)
...++.+.++|....++|.++.+..+.+ +||..-.+..|....|.+ . .-+..++++..|. +.-+.+
T Consensus 13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~ 91 (236)
T TIGR01460 13 HKPIPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGE 91 (236)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHH
Confidence 3446678999999999888877777654 488888888888855642 2 3467777765443 222455
Q ss_pred HHHHHHH
Q psy18175 112 FMEQLNS 118 (132)
Q Consensus 112 ~~~qL~~ 118 (132)
....|+.
T Consensus 92 ~~~~l~~ 98 (236)
T TIGR01460 92 LRESLEG 98 (236)
T ss_pred HHHHHHH
Confidence 6666654
No 184
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.99 E-value=1.1e+02 Score=19.23 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Q psy18175 84 LMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELME 125 (132)
Q Consensus 84 Lm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~ 125 (132)
|.+..|+++.++-+.+........+......+|....+.+..
T Consensus 53 llr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (99)
T cd04765 53 LLYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLD 94 (99)
T ss_pred HHHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHH
Confidence 345679999999999999988889999999999888777654
No 185
>KOG0235|consensus
Probab=36.87 E-value=1.5e+02 Score=21.72 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=25.4
Q ss_pred HHHHHHHHHHH----HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHH
Q psy18175 48 NHSHCTFTEEA----RSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAF 96 (132)
Q Consensus 48 ~~~~~~fi~~~----~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~ 96 (132)
+..+..|.++. ...|+.|+|+|....-|+ +++...|.+.++..
T Consensus 138 ~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~------i~~~l~g~s~~~i~ 184 (214)
T KOG0235|consen 138 LDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRA------IVKHLEGISDEAIK 184 (214)
T ss_pred HHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHH------HHHHHhcCCHhhhh
Confidence 44444554443 346789999997744343 45566677665543
No 186
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=36.65 E-value=1.2e+02 Score=19.99 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHH
Q psy18175 61 QDTGVLVHCLAGVSRSVTITVAYLM 85 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~~ayLm 85 (132)
+|+.++|..-.|.|.|-+...+.+.
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~ 37 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALN 37 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCccHHHHHHHHHh
Confidence 5788999999999999877765543
No 187
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=36.42 E-value=1.8e+02 Score=21.75 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH--HHHHHHhcCC-------CHHHHHHHHHh
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTIT--VAYLMSALRL-------SLNDAFTLVRA 101 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~--~ayLm~~~~~-------~~~~A~~~v~~ 101 (132)
...+..++.|+-+..+.|..|+ .-|.||-++.+ ++.++...|+ ....+++..+.
T Consensus 74 ~~~I~~ay~~l~~~~~~gd~I~---lfGFSRGA~~AR~~a~~i~~~Gll~~~~~~~~~~~~~~~~~ 136 (277)
T PF09994_consen 74 EARIRDAYRFLSKNYEPGDRIY---LFGFSRGAYTARAFANMIDKIGLLKPDNEERVPQAYKAYQR 136 (277)
T ss_pred HHHHHHHHHHHHhccCCcceEE---EEecCccHHHHHHHHHHHhhcCCcCcchhHHHHHHHHHHHh
Confidence 5678888888877777777776 67999998877 5557766676 24556665555
No 188
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=36.38 E-value=60 Score=23.00 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=18.0
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHH
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMS 86 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~ 86 (132)
...|-|.|+|..|.|-| |.++.-.++
T Consensus 19 ~~~Gli~VYtGdGKGKT-TAAlGlalR 44 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFF-TSVMAQALR 44 (178)
T ss_pred CCCCEEEEEeCCCCCch-HHHHHHHHH
Confidence 34688999999999988 333333344
No 189
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=36.31 E-value=70 Score=24.34 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCchH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVSRS 76 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS 76 (132)
+..+.+.++.+...|-++.+||..+-+-+
T Consensus 243 i~~~~~i~~~a~~~gi~~~~~~~~es~i~ 271 (307)
T TIGR01927 243 PAKLRDLAQKAHRLGLQAVFSSVFESSIA 271 (307)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccchHHH
Confidence 67778888888999999999997655433
No 190
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=36.30 E-value=1.9e+02 Score=22.00 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCc-h------H-HHHHHHHHHHhc--------CCCHHHHHHHHHhhC
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVS-R------S-VTITVAYLMSAL--------RLSLNDAFTLVRARK 103 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~-R------S-~~~~~ayLm~~~--------~~~~~~A~~~v~~~R 103 (132)
.....+.++.+.+.|..|+|||-..-- . + ....+..|.... .++..++++.+++.|
T Consensus 112 ~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak 183 (335)
T cd01294 112 LEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCN 183 (335)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCC
Confidence 356677777777888999999966421 1 0 112344455543 467889999998877
No 191
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=36.15 E-value=1.7e+02 Score=22.59 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCc-hHHHHHHHHHHHhcC----CCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVS-RSVTITVAYLMSALR----LSLNDAFTLVRARKSNIAPNFHFMEQLNSF 119 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~-RS~~~~~ayLm~~~~----~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~ 119 (132)
+..+..++-. ..|-+|+.|...|++ +|++ +-++...| .+++++.+.+.+......+.+.|...+..+
T Consensus 87 ist~~a~vlA--~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l 158 (330)
T TIGR01245 87 ISTASAFVAA--AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHV 158 (330)
T ss_pred cHHHHHHHHH--hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHH
Confidence 3445555543 448899999999988 8775 34555555 457788888887755544555555554433
No 192
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=35.96 E-value=2.1e+02 Score=22.38 Aligned_cols=51 Identities=12% Similarity=-0.063 Sum_probs=36.1
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHHHHH-HHHhc----CCCHHHHHHHHHhhCC
Q psy18175 54 FTEEARSQDTGVLVHCLAGVSRSVTITVAY-LMSAL----RLSLNDAFTLVRARKS 104 (132)
Q Consensus 54 fi~~~~~~~~~VlVHC~~G~~RS~~~~~ay-Lm~~~----~~~~~~A~~~v~~~Rp 104 (132)
.+.+...++..|+|+=..|+.+.+.-++.- ++... +++.++|-+++++.+.
T Consensus 320 ~~~~~~~~~~~vyiCGp~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~ 375 (384)
T cd06206 320 EVWELWEQGARVYVCGDGRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRN 375 (384)
T ss_pred HHHHHHHCCcEEEEECCCchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHH
Confidence 333344566789999889999886544444 44455 7999999999987753
No 193
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=35.64 E-value=60 Score=22.10 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=21.3
Q ss_pred EcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 68 HCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 68 HC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
+|..|.++.-+....--.++.+++.++|++.++..
T Consensus 128 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~ 162 (182)
T cd01906 128 ATAIGSGSQYALGILEKLYKPDMTLEEAIELALKA 162 (182)
T ss_pred EEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 45556655544333333345578899998887664
No 194
>KOG2634|consensus
Probab=35.50 E-value=1.3e+02 Score=24.01 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=35.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhc----CCC----------HHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTITVAYLMSAL----RLS----------LNDAFTLVRARKSNIAPNFHFMEQLNSF 119 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ayLm~~~----~~~----------~~~A~~~v~~~Rp~~~p~~~~~~qL~~~ 119 (132)
..-++.|.+|.-=|..+++..|+.++ +++ .++-+-.+......++|+++++.|+..|
T Consensus 404 ~~~~~~~~~~~~mssg~~l~ilC~~ya~~~~ls~e~~~itK~~vR~~L~kI~~l~~~~nPSRa~L~~Vnsf 474 (476)
T KOG2634|consen 404 NLPPAVNFAKLKMSSGKKLLILCQDYAFDGGLSFEEKSITKMDVRRMLIKICKLAVNANPSRANLKQVNSF 474 (476)
T ss_pred CCCeeecccccchhcCceeeeeehhccccccccccccccHHHHHHHHHHHHHHHhccCCccHHHHHHHHhh
Confidence 34556677776666555555555443 222 3334555666666799999999998765
No 195
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.09 E-value=85 Score=21.62 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=30.5
Q ss_pred HHHHHHHHHH--hCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 50 SHCTFTEEAR--SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 50 ~~~~fi~~~~--~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
.+.++|.+.. ..+.+|+|=|..|-+=.-++++|-.+...|+.
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~ 54 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN 54 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe
Confidence 3566777777 66789999999998877778877777766765
No 196
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=35.00 E-value=38 Score=21.22 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=15.5
Q ss_pred hcCCCHHHHHHHHHhhCCC
Q psy18175 87 ALRLSLNDAFTLVRARKSN 105 (132)
Q Consensus 87 ~~~~~~~~A~~~v~~~Rp~ 105 (132)
..|+++++.++.++..+-.
T Consensus 52 r~G~~~~~ii~~L~gi~~~ 70 (95)
T PF12637_consen 52 RSGVPPEEIIDQLRGIRCG 70 (95)
T ss_pred HcCCCHHHHHHHhcCCCCC
Confidence 4599999999999888644
No 197
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=34.63 E-value=34 Score=27.13 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcC----CCHHHHHHHHHhhCCCC---CCCHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALR----LSLNDAFTLVRARKSNI---APNFHF 112 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~----~~~~~A~~~v~~~Rp~~---~p~~~~ 112 (132)
.+.|...++-...-.-+|++|.| +..+-+|+..+++.|..+..| |++.+|.+. .|.. .++...
T Consensus 54 ~d~FyasvE~~~~p~L~~kPv~V-~~~~~~~~~V~a~sy~AR~~GV~~gM~~~~A~~l----cP~l~vv~~~~~~ 123 (404)
T cd01701 54 FDCFFVSVSIRNRPDLKGKPVAV-CHGKGPNSEIASCNYEARSYGIKNGMWVGQAKKL----CPQLVTLPYDFEA 123 (404)
T ss_pred CchHHHHHHhhhCccccCCCEEE-ecCCCCCeEEEecCHHHHhcCCCCCCcHHHHHHH----CCCcEEECCChHH
Confidence 45566666666555556788888 444444777888999999876 555555554 4553 455554
No 198
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=34.25 E-value=92 Score=26.52 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~ 80 (132)
.+.....++.|.+.+++|++|+|-|.+ +||+--++
T Consensus 385 ~~~e~~l~~~I~~tl~~gG~VLIP~fa-vGR~QEll 419 (630)
T TIGR03675 385 EEAEKELIKVVNETIKRGGKVLIPVFA-VGRAQEVM 419 (630)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEech-hHHHHHHH
Confidence 344567788899999999999999988 88985554
No 199
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=33.95 E-value=77 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=13.1
Q ss_pred HhCCCcEEEEcCCCCchHH
Q psy18175 59 RSQDTGVLVHCLAGVSRSV 77 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~ 77 (132)
+..+++|+++|..|. ||.
T Consensus 48 ~~~~~~vvl~c~~g~-~a~ 65 (90)
T cd01524 48 LPKDKEIIVYCAVGL-RGY 65 (90)
T ss_pred cCCCCcEEEEcCCCh-hHH
Confidence 345689999999874 553
No 200
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=33.92 E-value=2.3e+02 Score=22.07 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=34.6
Q ss_pred HHHHHHhCCCcEEEEcCC-CCchHHHHHHHH-HHHhcCCCHHHHHHHHHhhC
Q psy18175 54 FTEEARSQDTGVLVHCLA-GVSRSVTITVAY-LMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 54 fi~~~~~~~~~VlVHC~~-G~~RS~~~~~ay-Lm~~~~~~~~~A~~~v~~~R 103 (132)
.+.+....+..|+|+=.. ++.+.+.-++.- ++...+++-++|.+++++.+
T Consensus 299 ~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 350 (360)
T cd06199 299 ELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELK 350 (360)
T ss_pred HHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333344556778887777 788876555444 55567899999988887765
No 201
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.91 E-value=85 Score=20.72 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEc
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHC 69 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC 69 (132)
.+.+.++.+.+.+.+.+|++|++.=
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G 42 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCG 42 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 4668889999999999988777653
No 202
>PHA03338 US22 family homolog; Provisional
Probab=33.81 E-value=48 Score=25.56 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=27.8
Q ss_pred cEE-EEcCCCCchHHHHHHHH-HHHhcCCCHHHHHHHHHhhCCC
Q psy18175 64 GVL-VHCLAGVSRSVTITVAY-LMSALRLSLNDAFTLVRARKSN 105 (132)
Q Consensus 64 ~Vl-VHC~~G~~RS~~~~~ay-Lm~~~~~~~~~A~~~v~~~Rp~ 105 (132)
.|+ |||.+|++=|+.+.--| ++..++..++....+|.+..-.
T Consensus 157 ~vypihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe 200 (344)
T PHA03338 157 FFYPIHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGE 200 (344)
T ss_pred eEEEeccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCc
Confidence 344 79999998887766444 5556666666666666555433
No 203
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=33.61 E-value=84 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCchH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVSRS 76 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS 76 (132)
+..+.+.++.+.+.|-++.+||..+-+++
T Consensus 254 i~~a~~i~~~a~~~gi~~~~g~~~es~i~ 282 (321)
T PRK15129 254 LTEALALATEARAQGFALMLGCMLCTSRA 282 (321)
T ss_pred HHHHHHHHHHHHHcCCcEEEecchHHHHH
Confidence 66777888888888999999998555444
No 204
>PTZ00458 acyl CoA binding protein; Provisional
Probab=33.56 E-value=1.2e+02 Score=18.91 Aligned_cols=32 Identities=6% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q psy18175 92 LNDAFTLVRARKSNIAPNFHFMEQLNSFEKEL 123 (132)
Q Consensus 92 ~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l 123 (132)
++.|..+|+.......|+...+.+|..|.++-
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQA 36 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQS 36 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Confidence 67899999887666677877777787776654
No 205
>PRK05667 dnaG DNA primase; Validated
Probab=33.49 E-value=57 Score=27.44 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=28.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q psy18175 65 VLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 65 VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~R 103 (132)
=..||.+ -|.+|- ++-++|...++++.+|++.+...-
T Consensus 56 ~~~~CF~-Cg~~Gd-~i~fv~~~~~~sf~eAv~~La~~~ 92 (580)
T PRK05667 56 QFYHCFG-CGAGGD-VIKFLMEYEGLSFVEAVEELADRA 92 (580)
T ss_pred CeEEECC-CCCCCC-HHHHHHHHhCCCHHHHHHHHHHHh
Confidence 3589974 345553 567889999999999999997664
No 206
>KOG0870|consensus
Probab=33.19 E-value=1.7e+02 Score=20.55 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCcEEEEc--CCCCchHHHHHHHHHHHh----------cCCCHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy18175 51 HCTFTEEARSQDTGVLVHC--LAGVSRSVTITVAYLMSA----------LRLSLNDAFTLVRARKSNIAPNFHFMEQLNS 118 (132)
Q Consensus 51 ~~~fi~~~~~~~~~VlVHC--~~G~~RS~~~~~ayLm~~----------~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~ 118 (132)
+.+.+.+++..+ .|+||= ..-++||+++-+.||-.. .-++.++.+.-+...- ...........|..
T Consensus 16 I~rlvke~l~E~-~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eie-fs~f~~plk~~Le~ 93 (172)
T KOG0870|consen 16 ITRLVKEVLPES-NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIE-FSSFVNPLKSALEA 93 (172)
T ss_pred HHHHHHHhCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhc-hHHHhhHHHHHHHH
Confidence 345566666653 678874 345789999999988652 3477888888887774 34445556778888
Q ss_pred HHHHHHHhhh
Q psy18175 119 FEKELMEARL 128 (132)
Q Consensus 119 ~e~~l~~~~~ 128 (132)
|.+...+++.
T Consensus 94 yk~~~k~Kk~ 103 (172)
T KOG0870|consen 94 YKKAVKQKKL 103 (172)
T ss_pred HHHHHHHHHH
Confidence 8877766553
No 207
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=33.10 E-value=1.6e+02 Score=22.40 Aligned_cols=49 Identities=8% Similarity=-0.104 Sum_probs=26.4
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLN 93 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~ 93 (132)
.+.+.++++.+.+.+++|++|++-=..+-||=+.+-++-+....|.+.+
T Consensus 40 l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~ 88 (291)
T TIGR00274 40 LPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPE 88 (291)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHH
Confidence 4456677777777888887766543222223223333334455565544
No 208
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=32.94 E-value=96 Score=18.57 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAG 72 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G 72 (132)
...+.++++-+ .... .++++|++.+|
T Consensus 71 p~~~~~v~~~i-~~~~-~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLL-KGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHH-TTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhcc-CCCEEEEeCCC
Confidence 45677777777 3333 47899999987
No 209
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=32.74 E-value=2.3e+02 Score=23.99 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEc-CCCCchHHHHHHHH-HHHhcCCCHHHHHHHHHhhC
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHC-LAGVSRSVTITVAY-LMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC-~~G~~RS~~~~~ay-Lm~~~~~~~~~A~~~v~~~R 103 (132)
+.+.+-.+-|.+++++|..+||+- ..|+.+-+.-++.= +....+++-++|-++++..+
T Consensus 518 d~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk 577 (587)
T COG0369 518 DRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELK 577 (587)
T ss_pred HHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 346666777888999999999988 88888887766554 55566788888888887664
No 210
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=32.51 E-value=1.2e+02 Score=21.81 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=19.1
Q ss_pred hCCCcEEEEcCCCCchHHH-HHHHHHHH
Q psy18175 60 SQDTGVLVHCLAGVSRSVT-ITVAYLMS 86 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~-~~~ayLm~ 86 (132)
...+.|.|+|..|.|-|.+ +.+|+-+.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 3568999999999998833 44444444
No 211
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=32.39 E-value=67 Score=24.65 Aligned_cols=39 Identities=8% Similarity=0.010 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCC--CchHHHHHHHHHH
Q psy18175 47 FNHSHCTFTEEARSQDTGVLVHCLAG--VSRSVTITVAYLM 85 (132)
Q Consensus 47 ~~~~~~~fi~~~~~~~~~VlVHC~~G--~~RS~~~~~ayLm 85 (132)
-+..+.+.++-+...|-++.+||..+ +++++++-++..+
T Consensus 243 Gi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~ 283 (322)
T PRK05105 243 SLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWL 283 (322)
T ss_pred CHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhc
Confidence 37888888888999999999998554 4455555554443
No 212
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=32.27 E-value=57 Score=19.59 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHHH
Q psy18175 64 GVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~~ 80 (132)
+|++-|..|+|=|-.+.
T Consensus 2 ~ilivC~~G~~tS~~l~ 18 (89)
T cd05566 2 KILVACGTGVATSTVVA 18 (89)
T ss_pred EEEEECCCCccHHHHHH
Confidence 69999999998774444
No 213
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=32.24 E-value=32 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHH
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAY 83 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ay 83 (132)
.+..-..+.++-+.+.+.+|.|||.....+.--++-.+
T Consensus 108 ~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il~~~ 145 (255)
T PF01026_consen 108 VQEEVFERQLELAKELNLPVSIHCRKAHEELLEILKEY 145 (255)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHHHhc
Confidence 33444445555555556777777777776665555444
No 214
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.23 E-value=96 Score=23.66 Aligned_cols=47 Identities=6% Similarity=-0.105 Sum_probs=27.3
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
.+.+.++++.+-+.+++|++|++-=..|-+|-+.+-++-+.-.++++
T Consensus 41 ~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~ 87 (296)
T PRK12570 41 LPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVS 87 (296)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCC
Confidence 35567777777788888888665443334344444444444444544
No 215
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=32.18 E-value=1.3e+02 Score=25.38 Aligned_cols=37 Identities=11% Similarity=-0.125 Sum_probs=29.7
Q ss_pred ccCCCCC-cccHHHHHHHHHHHHhCCCcEEEEcCCCCc
Q psy18175 38 VCGWPKG-SKFNHSHCTFTEEARSQDTGVLVHCLAGVS 74 (132)
Q Consensus 38 ~D~~~~~-~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~ 74 (132)
.+...|. .+.++++++.|.+++.++++|+|+-..-..
T Consensus 44 ~~l~~P~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~D 81 (575)
T PRK11070 44 KGLLPWQQLSGIEKAVELLYNALREGTRIIVVGDFDAD 81 (575)
T ss_pred hhcCChHHhhCHHHHHHHHHHHHHCCCEEEEEEecCcc
Confidence 3444445 788999999999999999999998776554
No 216
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=32.02 E-value=1.7e+02 Score=25.54 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCchHHHHHHHH----HHHhcCCCHHHHHHHHHhh
Q psy18175 63 TGVLVHCLAGVSRSVTITVAY----LMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ay----Lm~~~~~~~~~A~~~v~~~ 102 (132)
.++.+|...|.. ++++.= ||...|+++++|++.+++.
T Consensus 214 ~~~~ihlNdtHp---a~ai~ElmR~L~de~gl~~~eA~eiv~~~ 254 (713)
T PF00343_consen 214 DKVVIHLNDTHP---AFAIPELMRILMDEEGLSWDEAWEIVRKT 254 (713)
T ss_dssp HHEEEEEESSTT---TTHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred cceEEeecCCcc---HHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 589999999994 444443 5556799999999999986
No 217
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=31.88 E-value=1.1e+02 Score=17.93 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 78 TITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 78 ~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
|=++=||+++ |+++++|...+-+.
T Consensus 5 TdlAD~LVr~-GipFR~AH~iVg~~ 28 (70)
T PF14698_consen 5 TDLADYLVRK-GIPFREAHHIVGRL 28 (70)
T ss_dssp HHHHHHHHHT-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 4456678888 99999998877554
No 218
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=31.76 E-value=52 Score=19.61 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchHHHHH
Q psy18175 64 GVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~~ 80 (132)
+++|-|.+|+|=|..+.
T Consensus 1 kilvvC~~G~~tS~ll~ 17 (86)
T cd05563 1 KILAVCGSGLGSSLMLK 17 (86)
T ss_pred CEEEECCCCccHHHHHH
Confidence 48999999998774444
No 219
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=31.59 E-value=62 Score=21.13 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.7
Q ss_pred EEEEcCCCCchHHHH
Q psy18175 65 VLVHCLAGVSRSVTI 79 (132)
Q Consensus 65 VlVHC~~G~~RS~~~ 79 (132)
||+=|.+..+||+..
T Consensus 1 ILFvC~~N~cRS~mA 15 (138)
T PF01451_consen 1 ILFVCTGNICRSPMA 15 (138)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred CEEEeCCCcchHHHH
Confidence 688999999999543
No 220
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=31.50 E-value=1.9e+02 Score=22.90 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH-----hcCCCHHHHHHHHH
Q psy18175 49 HSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS-----ALRLSLNDAFTLVR 100 (132)
Q Consensus 49 ~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~-----~~~~~~~~A~~~v~ 100 (132)
+...+.++.+.+.|.+|.+||..-. +.-+.+|+-. +...+.+++++.++
T Consensus 121 ~~l~~~i~~A~~~g~~v~~Ha~g~~---~~~L~a~l~aGi~~dH~~~~~eea~e~l~ 174 (422)
T cd01295 121 DEMLAKIQAAKKAGKPVDGHAPGLS---GEELNAYMAAGISTDHEAMTGEEALEKLR 174 (422)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCC---HHHHHHHHHcCCCCCcCCCcHHHHHHHHH
Confidence 3566667778888999999994422 3444555532 24466888888874
No 221
>KOG1530|consensus
Probab=31.27 E-value=37 Score=22.99 Aligned_cols=15 Identities=33% Similarity=0.758 Sum_probs=12.5
Q ss_pred CcEEEEcCCCCchHHH
Q psy18175 63 TGVLVHCLAGVSRSVT 78 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~ 78 (132)
..+.++|..|. ||..
T Consensus 90 ~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 90 KEIIFGCASGV-RSLK 104 (136)
T ss_pred CcEEEEeccCc-chhH
Confidence 48999999998 8843
No 222
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=31.27 E-value=71 Score=23.74 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=27.3
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH---HHHHHHhcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTIT---VAYLMSALRLS 91 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~---~ayLm~~~~~~ 91 (132)
.+.+.++++.+-+.+++|++|++ | |.|-|+.++ ++.+...+|.+
T Consensus 32 l~~I~~av~~~~~~l~~ggrl~~-~--GaGtSg~la~~da~e~~~tfg~~ 78 (257)
T cd05007 32 LPQIARAVDAAAERLRAGGRLIY-V--GAGTSGRLGVLDASELPPTFGTP 78 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE-E--cCcHHHHHHHHHHHhccccccCC
Confidence 45677788888888888887554 4 344455544 34444455653
No 223
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.19 E-value=49 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=18.8
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGV 73 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~ 73 (132)
.+.++.+++++.+... ..-++.||..++
T Consensus 125 l~EI~~Av~~~~~~~~-~~l~llHC~s~Y 152 (241)
T PF03102_consen 125 LEEIERAVEVLREAGN-EDLVLLHCVSSY 152 (241)
T ss_dssp HHHHHHHHHHHHHHCT---EEEEEE-SSS
T ss_pred HHHHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence 6677888888855443 367999999875
No 224
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=31.14 E-value=70 Score=22.62 Aligned_cols=29 Identities=3% Similarity=0.030 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGV 73 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~ 73 (132)
...++++.+.+.++.-..|+|+||+..-+
T Consensus 21 e~~iedaARlLAQA~vgeG~IYi~G~~Em 49 (172)
T PF10740_consen 21 EESIEDAARLLAQAIVGEGTIYIYGFGEM 49 (172)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEE-GGG
T ss_pred HhhHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 45688999999999998899999997655
No 225
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=30.70 E-value=2.4e+02 Score=22.73 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC-CCchHHHH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLA-GVSRSVTI 79 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~-G~~RS~~~ 79 (132)
+.++.+..+-+...|-++.+||.. +-+.+.+.
T Consensus 334 It~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa 366 (408)
T TIGR01502 334 VNNIARAIMYCKANGMGAYVGGTCNETNRSAEV 366 (408)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHH
Confidence 556666666777788899999875 54454333
No 226
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=30.70 E-value=96 Score=17.79 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=15.9
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHH
Q psy18175 59 RSQDTGVLVHCLAGVSRSVTITVAYLM 85 (132)
Q Consensus 59 ~~~~~~VlVHC~~G~~RS~~~~~ayLm 85 (132)
...+.+|+++|..|. || ..++.+|.
T Consensus 47 ~~~~~~vv~~c~~~~-~a-~~~~~~l~ 71 (89)
T cd00158 47 LDKDKPIVVYCRSGN-RS-ARAAKLLR 71 (89)
T ss_pred cCCCCeEEEEeCCCc-hH-HHHHHHHH
Confidence 345689999999973 55 33344333
No 227
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=30.68 E-value=2.2e+02 Score=24.12 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEcC--------------CCCchHHHHHHHHHHHhcCCC-H----HHHHHHHHh
Q psy18175 48 NHSHCTFTEEARSQD-TGVLVHCL--------------AGVSRSVTITVAYLMSALRLS-L----NDAFTLVRA 101 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~-~~VlVHC~--------------~G~~RS~~~~~ayLm~~~~~~-~----~~A~~~v~~ 101 (132)
++...+-|.+..++| .=+-|||. .=+||-|++.++|++.+..-+ + ++-++.+++
T Consensus 294 ~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~R~tgIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~ 367 (607)
T PRK09284 294 WEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAA 367 (607)
T ss_pred HHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCcccCcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 555667777777776 35679995 226899999999999987765 3 444444444
No 228
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=30.35 E-value=87 Score=22.18 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEc
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHC 69 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC 69 (132)
.+.+..+.+.|-+++..|++||++-
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~cG 48 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLACG 48 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEC
Confidence 4567778888888999999998753
No 229
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=30.20 E-value=93 Score=23.81 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEc--CCCCchHHHHHHHHH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHC--LAGVSRSVTITVAYL 84 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC--~~G~~RS~~~~~ayL 84 (132)
+..+.+.++.+...|-++.+|| ..|++.++++-+|.+
T Consensus 260 it~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~ 298 (324)
T TIGR01928 260 LTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASL 298 (324)
T ss_pred HHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhC
Confidence 6777788888888999999987 456666666555544
No 230
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=30.18 E-value=2.2e+02 Score=23.02 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEcC----------------CCCchHHHHHHHHHHHhcCCC-----HHHHHHHHHh
Q psy18175 48 NHSHCTFTEEARSQD-TGVLVHCL----------------AGVSRSVTITVAYLMSALRLS-----LNDAFTLVRA 101 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~-~~VlVHC~----------------~G~~RS~~~~~ayLm~~~~~~-----~~~A~~~v~~ 101 (132)
.+...+.+.++.++| .-.-|||. .=+||-|++.++|++....-+ +++-++.+++
T Consensus 140 ~d~~~~~v~~qa~~GVdfmTIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~ 215 (432)
T COG0422 140 EDDFFDTVEKQAEQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKE 215 (432)
T ss_pred HHHHHHHHHHHHHhCCcEEEeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHH
Confidence 444556666666666 34668882 226899999999999877654 4455555554
No 231
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=30.12 E-value=1.2e+02 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.066 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCchH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVSRS 76 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS 76 (132)
+..+.+.++.+.+.|-++.+||..+ +-+
T Consensus 277 i~~~~~i~~~a~~~g~~~~~~~~~~-~i~ 304 (357)
T cd03316 277 ITEAKKIAALAEAHGVRVAPHGAGG-PIG 304 (357)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCC-HHH
Confidence 6777888888888898999999765 443
No 232
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.03 E-value=91 Score=19.78 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=24.6
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 73 VSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 73 ~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
.|||||-.+.+.+-..|.+..+-++.+.+.
T Consensus 48 ~g~SPt~eLL~~WG~~n~Tv~~L~~~L~k~ 77 (97)
T cd08307 48 RGRSPTEELLDIWGNKNHTITELFVLLYRE 77 (97)
T ss_pred CCCChHHHHHHHHhhcCCCHHHHHHHHHHh
Confidence 469999999999988898888877777654
No 233
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=29.94 E-value=77 Score=23.30 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAG 72 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G 72 (132)
+..+.+.++.+...|-++.+||..+
T Consensus 217 i~~~~~~~~~A~~~gi~~~~~~~~~ 241 (265)
T cd03315 217 LTKAQRVLAVAEALGLPVMVGSMIE 241 (265)
T ss_pred HHHHHHHHHHHHHcCCcEEecCccc
Confidence 5666777778888888999998754
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=29.90 E-value=1.8e+02 Score=19.72 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCC---CcEEEEcCCCCchHHHHHHHHHHHhcC
Q psy18175 49 HSHCTFTEEARSQD---TGVLVHCLAGVSRSVTITVAYLMSALR 89 (132)
Q Consensus 49 ~~~~~fi~~~~~~~---~~VlVHC~~G~~RS~~~~~ayLm~~~~ 89 (132)
+++.+.+.+..+++ ...|+|...|.|.+ +++.++...-.+
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~-~~a~~~a~~ll~ 45 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKK-TLALAFARALLC 45 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHH-HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHH-HHHHHHHHHHcC
Confidence 45777888888876 35799999999977 555555444443
No 235
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=29.88 E-value=69 Score=23.50 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCcEEEEcCCCCchHHHHH--HHHHHHhcCCCH
Q psy18175 61 QDTGVLVHCLAGVSRSVTIT--VAYLMSALRLSL 92 (132)
Q Consensus 61 ~~~~VlVHC~~G~~RS~~~~--~ayLm~~~~~~~ 92 (132)
.+++++|--.+|-|-|.+++ ++||+...+.++
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~ 45 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPP 45 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTG
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCCh
Confidence 46899999999999998877 578888776544
No 236
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=29.78 E-value=83 Score=24.90 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=18.0
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
..+++|+++|..|. ||.. ++. .+...|.
T Consensus 341 ~~d~~iVvyC~~G~-rS~~-aa~-~L~~~G~ 368 (392)
T PRK07878 341 PQDRTIVLYCKTGV-RSAE-ALA-ALKKAGF 368 (392)
T ss_pred CCCCcEEEEcCCCh-HHHH-HHH-HHHHcCC
Confidence 45689999999885 7633 333 3444454
No 237
>COG4006 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.44 E-value=1.1e+02 Score=22.92 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEcCCCCc-hHHHHHH-HHHHHhcCCC-HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHCLAGVS-RSVTITV-AYLMSALRLS-LNDAFTLVRARKSNIAPNFHFMEQLNSFEKE 122 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~-RS~~~~~-ayLm~~~~~~-~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~ 122 (132)
+.++.+..-|...+.+|..|+|.-+.|.- -|+.+.+ ++|.-.-+.= ..++++.+-.. |.+...++|..+|.++-.+
T Consensus 135 dL~~~v~~di~~~~~~gn~vyinaTgGfKPES~fltLagsLaGa~~vyYihE~fndvV~i-Ppi~~~P~~~l~Lie~arr 213 (278)
T COG4006 135 DLVREVYCDIKVRIGRGNVVYINATGGFKPESGFLTLAGSLAGASAVYYIHEAFNDVVFI-PPIRLSPQVDLHLIEDARR 213 (278)
T ss_pred HHHHHHHHHhheeccCCceEEEecCCCCCchHHHHHHHHHHcCCceeEeeHHhhCCceec-CCeecCchHHHHHHHHHHH
Confidence 33444444455555678899999999986 5555544 4443221111 57777777665 5688899999999999888
Q ss_pred HHHh
Q psy18175 123 LMEA 126 (132)
Q Consensus 123 l~~~ 126 (132)
|...
T Consensus 214 la~g 217 (278)
T COG4006 214 LALG 217 (278)
T ss_pred HhcC
Confidence 6443
No 238
>PRK10318 hypothetical protein; Provisional
Probab=29.34 E-value=78 Score=21.06 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHHHHhC----CCcEEEEcCCCCchH
Q psy18175 45 SKFNHSHCTFTEEARSQ----DTGVLVHCLAGVSRS 76 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~----~~~VlVHC~~G~~RS 76 (132)
...+..+=+||+.+-.+ |++=.|+|..|--++
T Consensus 67 k~~i~taE~FI~~~ASkSs~SGkpY~V~c~~~~~~~ 102 (121)
T PRK10318 67 RNRIDTAEQFIDKVASSSSISGKPYIVKCPGKSDEN 102 (121)
T ss_pred cCccccHHHHHHHHhhhcccCCCCeEEEcCCCCccc
Confidence 44567788899887764 789999999997533
No 239
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=29.32 E-value=82 Score=22.84 Aligned_cols=28 Identities=4% Similarity=0.001 Sum_probs=24.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAG 72 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G 72 (132)
.+.+++++++|.+..+.|-+|+|....-
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGS 129 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGS 129 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCC
Confidence 5668999999999999999999998653
No 240
>PRK05451 dihydroorotase; Provisional
Probab=29.31 E-value=2.6e+02 Score=21.57 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCc----hH---HHH--HHHHHHHhc--------CCCHHHHHHHHHhhCCCC
Q psy18175 49 HSHCTFTEEARSQDTGVLVHCLAGVS----RS---VTI--TVAYLMSAL--------RLSLNDAFTLVRARKSNI 106 (132)
Q Consensus 49 ~~~~~fi~~~~~~~~~VlVHC~~G~~----RS---~~~--~~ayLm~~~--------~~~~~~A~~~v~~~Rp~~ 106 (132)
....+.++.+.+.|..|+|||-..-. ++ ..+ .+..+.... .++..++++.+++.++.+
T Consensus 118 ~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~~lA~~~pg~~lhI~Hlst~~~~e~i~~a~~~i 192 (345)
T PRK05451 118 EKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVREANDNL 192 (345)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHHHHHHhcCCCcEEEEecCcHHHHHHHHhcCCCE
Confidence 34556667777888999999987322 22 111 223355343 367788999998866544
No 241
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=29.26 E-value=1.8e+02 Score=19.45 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=16.2
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHH
Q psy18175 60 SQDTGVLVHCLAGVSRSVTITVAYLMS 86 (132)
Q Consensus 60 ~~~~~VlVHC~~G~~RS~~~~~ayLm~ 86 (132)
..+.+|+|+|..| .+| ..+++.|-.
T Consensus 47 ~~~~~vVv~c~~g-~~a-~~aa~~L~~ 71 (145)
T cd01535 47 PAAERYVLTCGSS-LLA-RFAAADLAA 71 (145)
T ss_pred CCCCCEEEEeCCC-hHH-HHHHHHHHH
Confidence 3457899999986 244 555555543
No 242
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=29.10 E-value=48 Score=22.00 Aligned_cols=30 Identities=7% Similarity=-0.021 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHH-hCCCcEEEEcCCCCchH
Q psy18175 47 FNHSHCTFTEEAR-SQDTGVLVHCLAGVSRS 76 (132)
Q Consensus 47 ~~~~~~~fi~~~~-~~~~~VlVHC~~G~~RS 76 (132)
.+..+++-|.... ...++++|||....+-.
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHH
Confidence 3455555444431 12478999998877544
No 243
>PRK13744 conjugal transfer protein TrbG; Provisional
Probab=28.92 E-value=76 Score=18.65 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=18.8
Q ss_pred cceeecCCCcceeehhhccccccCc
Q psy18175 6 IRTYLSGLPDSVCVLIKYQADLFSH 30 (132)
Q Consensus 6 ~~l~l~gi~~~~~~~~~~~~~~~~~ 30 (132)
|-+|-+||+++.|....-+++.-+.
T Consensus 16 pvlyesgitpplcevsapepdaggk 40 (83)
T PRK13744 16 PVLYESGITPPLCEVSAPEPDAGGK 40 (83)
T ss_pred cEeeecCCCCccccccCCCCCCCCc
Confidence 5789999999998866655555544
No 244
>PF10652 DUF2480: Protein of unknown function (DUF2480); InterPro: IPR018914 All the members of this family are uncharacterised proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (5.3.1.9 from EC). This could not, however, be confirmed.
Probab=28.83 E-value=58 Score=22.85 Aligned_cols=42 Identities=21% Similarity=0.063 Sum_probs=30.9
Q ss_pred eEEEEEeccCCCCC----cccHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy18175 31 TCQVFLIVCGWPKG----SKFNHSHCTFTEEARSQDTGVLVHCLAG 72 (132)
Q Consensus 31 ~~~~i~~~D~~~~~----~~~~~~~~~fi~~~~~~~~~VlVHC~~G 72 (132)
....+.+.|+-... ...|.+.++-.+-..-+|..|.|||+.-
T Consensus 27 ~r~~~Dik~~L~~GliLkEKdFR~~lk~~DWsqY~~~~Vai~CStD 72 (167)
T PF10652_consen 27 ERVVFDIKDWLFEGLILKEKDFREFLKEHDWSQYQDKYVAIYCSTD 72 (167)
T ss_pred cEEEEecHHHHhhhhhhhhHHHHHHHHhcCHHHhCCcEEEEEcccc
Confidence 34677888877766 4557777776666667889999999764
No 245
>KOG1905|consensus
Probab=28.81 E-value=58 Score=25.30 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVT 78 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~ 78 (132)
.+.+..-++-+.+++++++.++||=.+|+|-++.
T Consensus 38 ~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~ 71 (353)
T KOG1905|consen 38 PEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAG 71 (353)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEeCCccccccC
Confidence 5667777888888899999999999999987744
No 246
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=28.56 E-value=1.3e+02 Score=25.36 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchH--HHHHHHHHHHhcC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRS--VTITVAYLMSALR 89 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS--~~~~~ayLm~~~~ 89 (132)
.+.-++.++.|.+..++||+|||--.+ +||| ..+++--.|+..-
T Consensus 391 ~eaE~~L~~vi~~t~~rGGKvLIP~fA-VGR~QEvM~VLee~mr~g~ 436 (637)
T COG1782 391 EEAEKELIKVINDTLKRGGKVLIPVFA-VGRSQEVMIVLEEAMRKGL 436 (637)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeee-ccccceehhHHHHHHhcCC
Confidence 556677888999999999999998765 7777 5555555676543
No 247
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=28.55 E-value=70 Score=24.54 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=10.3
Q ss_pred CCCcEEEEcCCCC
Q psy18175 61 QDTGVLVHCLAGV 73 (132)
Q Consensus 61 ~~~~VlVHC~~G~ 73 (132)
.|..||.||..|.
T Consensus 118 ~g~~ILT~~~Sg~ 130 (303)
T TIGR00524 118 DGDTVLTHCNAGA 130 (303)
T ss_pred CCCEEEEecCCcc
Confidence 5678999998854
No 248
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.54 E-value=2.5e+02 Score=20.95 Aligned_cols=90 Identities=9% Similarity=-0.005 Sum_probs=52.6
Q ss_pred EEEEeccCCCCC-cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH---------------hcCCCHHHHH
Q psy18175 33 QVFLIVCGWPKG-SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS---------------ALRLSLNDAF 96 (132)
Q Consensus 33 ~~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~---------------~~~~~~~~A~ 96 (132)
..+.+.|+...- +..+.+.++.+.+... .++-+||..=.|-+.+-+++-+.. ..+.++++.+
T Consensus 164 ~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~ 241 (275)
T cd07937 164 DSICIKDMAGLLTPYAAYELVKALKKEVG--LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMV 241 (275)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHhCC--CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHH
Confidence 346667766655 6666666666666553 678899987777665555544433 1124577777
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHH
Q psy18175 97 TLVRARKSNIAPNFHFMEQLNSFEKELM 124 (132)
Q Consensus 97 ~~v~~~Rp~~~p~~~~~~qL~~~e~~l~ 124 (132)
..++..--....+..-+..+.++-+.++
T Consensus 242 ~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 242 AALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 7776652223445555555555544443
No 249
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=28.52 E-value=1.5e+02 Score=20.65 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=24.2
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLA 71 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~ 71 (132)
.+.+..++.||.+.++.|++|++=+..
T Consensus 30 ~e~~~~~~~Fi~~GL~~ge~~l~v~~~ 56 (191)
T PF14417_consen 30 EELLEVLVPFIREGLARGERCLYVAPD 56 (191)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 678899999999999999999988864
No 250
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=28.46 E-value=96 Score=24.59 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC--CCchHHHH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLA--GVSRSVTI 79 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~--G~~RS~~~ 79 (132)
+..+.+.++.+.+.|-++.+||.. |++.++++
T Consensus 298 it~~~kia~~A~~~gi~~~~h~~~e~~i~~aa~~ 331 (395)
T cd03323 298 MRGSVRVAQVCETWGLGWGMHSNNHLGISLAMMT 331 (395)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHH
Confidence 677888888889999999999986 55555443
No 251
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=28.23 E-value=47 Score=24.36 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHH------HHH-------H--HHhcCCCHHHHHHHHHhhC---CCCCCCHHHHHHHHH
Q psy18175 57 EARSQDTGVLVHCLAGVSRSVTIT------VAY-------L--MSALRLSLNDAFTLVRARK---SNIAPNFHFMEQLNS 118 (132)
Q Consensus 57 ~~~~~~~~VlVHC~~G~~RS~~~~------~ay-------L--m~~~~~~~~~A~~~v~~~R---p~~~p~~~~~~qL~~ 118 (132)
+.+++.++|+|.+.+|+|-+..+- -.| + .....-+++..+++.+..+ ..+.||... ..|.+
T Consensus 8 ~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~~~~~~~~~~~~~~~p~~~w~f~~~~~~~~~~~~Pn~~H-~~L~~ 86 (242)
T PRK00481 8 EILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPEDVASPEGFARDPELVWKFYNERRRQLLDAKPNAAH-RALAE 86 (242)
T ss_pred HHHHhCCCEEEEeCCccccccCCCCccCCCcCccCCCHHHhccHHHHhhCHHHHHHHHHHHHHHhccCCCCHHH-HHHHH
Confidence 344455789999999999775321 000 0 0011134555555554432 256788774 46666
Q ss_pred HHH
Q psy18175 119 FEK 121 (132)
Q Consensus 119 ~e~ 121 (132)
|++
T Consensus 87 L~~ 89 (242)
T PRK00481 87 LEK 89 (242)
T ss_pred HHh
Confidence 664
No 252
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=28.15 E-value=84 Score=22.35 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=19.8
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 69 CLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 69 C~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
|..|.+..-+....-=.+..+++.+||++.+...
T Consensus 161 ~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~ 194 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSI 194 (213)
T ss_pred EEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 4455555433333322334478999999887763
No 253
>PLN02444 HMP-P synthase
Probab=28.14 E-value=2.1e+02 Score=24.36 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEcC--------------CCCchHHHHHHHHHHHhcCCC-H----HHHHHHHHh
Q psy18175 48 NHSHCTFTEEARSQD-TGVLVHCL--------------AGVSRSVTITVAYLMSALRLS-L----NDAFTLVRA 101 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~-~~VlVHC~--------------~G~~RS~~~~~ayLm~~~~~~-~----~~A~~~v~~ 101 (132)
.+...+-|++..++| .=+-|||. .=+||-|++.++|++....-+ + ++-++.+++
T Consensus 299 ~d~~~d~ieeQaeqGVDfmTIH~Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~ 372 (642)
T PLN02444 299 WEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQ 372 (642)
T ss_pred HHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 556667777777776 35779995 226899999999999887655 3 444555554
No 254
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=28.09 E-value=67 Score=18.20 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.4
Q ss_pred CCCchHHHHHHHHHHH
Q psy18175 71 AGVSRSVTITVAYLMS 86 (132)
Q Consensus 71 ~G~~RS~~~~~ayLm~ 86 (132)
.|+|-|++++++.+..
T Consensus 12 ~GLgSSaa~~~a~~~a 27 (67)
T PF00288_consen 12 SGLGSSAALAVALAAA 27 (67)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH
Confidence 5899999888876544
No 255
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=28.06 E-value=2.4e+02 Score=20.53 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=47.4
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHh
Q psy18175 54 FTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEA 126 (132)
Q Consensus 54 fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~ 126 (132)
-|+...+..+. ++.|..|++-=.+.-.+-++.. -.+-+.+.+++.-...+-.+|..-|.+.|+.+...
T Consensus 151 vI~~l~e~~e~-~fy~GDsvsDlsaaklsDllFA----K~~L~nyc~eqn~~f~~fe~F~eIlk~iekvl~~~ 218 (220)
T COG4359 151 VIHELSEPNES-IFYCGDSVSDLSAAKLSDLLFA----KDDLLNYCREQNLNFLEFETFYEILKEIEKVLEVQ 218 (220)
T ss_pred hHHHhhcCCce-EEEecCCcccccHhhhhhhHhh----HHHHHHHHHHcCCCCcccccHHHHHHHHHHHHhhh
Confidence 34555555554 8999999984333333333322 23788899888877889999999999999988764
No 256
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=27.86 E-value=69 Score=20.84 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTITVAYL 84 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ayL 84 (132)
.+||+=|.+...||+ |+-+++
T Consensus 1 ~~vlfvC~~N~cRS~-mAEa~~ 21 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQ-MAEGFA 21 (126)
T ss_pred CeEEEEcCCcHHHHH-HHHHHH
Confidence 369999999999995 454544
No 257
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=27.79 E-value=1.2e+02 Score=22.82 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHH------HhcCCCHHHHHHHHH
Q psy18175 46 KFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLM------SALRLSLNDAFTLVR 100 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm------~~~~~~~~~A~~~v~ 100 (132)
.+..-...+|+-+.+.+.+|.|||.......-.++-.+.. .-+.-+.+.|-+.+.
T Consensus 109 ~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d 169 (256)
T COG0084 109 RQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLD 169 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHH
Confidence 3555566778888888888999987766555444444321 111234666665553
No 258
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=27.62 E-value=28 Score=26.60 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=10.2
Q ss_pred CCCcEEEEcCCCC
Q psy18175 61 QDTGVLVHCLAGV 73 (132)
Q Consensus 61 ~~~~VlVHC~~G~ 73 (132)
.+++|+|||..=+
T Consensus 226 SP~RVlIHalDPV 238 (287)
T PF05582_consen 226 SPKRVLIHALDPV 238 (287)
T ss_pred CccceEEeccCcc
Confidence 4689999997643
No 259
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=27.48 E-value=1.7e+02 Score=20.94 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=18.9
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 63 TGVLVHCLA--GVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 63 ~~VlVHC~~--G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
-+|+||-.. |++|. |.+.+++.+.++..
T Consensus 119 ~~v~l~id~~~Gm~R~------------Gi~~~~~~~~~~~i 148 (224)
T cd06824 119 LNVCIQVNISGEDSKS------------GVAPEDAAELAEAI 148 (224)
T ss_pred CcEEEEEEcCCCCCCC------------CCCHHHHHHHHHHH
Confidence 367888877 88887 66666666655544
No 260
>KOG1838|consensus
Probab=27.31 E-value=40 Score=27.12 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCC--CHHHHHHHHHhhCCCC
Q psy18175 49 HSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRL--SLNDAFTLVRARKSNI 106 (132)
Q Consensus 49 ~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~--~~~~A~~~v~~~Rp~~ 106 (132)
.-+..++.++.++|-++.|-=.-|.++|...-=.. ...|+ ++++++++++.+.|.+
T Consensus 141 ~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~--f~ag~t~Dl~~~v~~i~~~~P~a 198 (409)
T KOG1838|consen 141 SYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRL--FTAGWTEDLREVVNHIKKRYPQA 198 (409)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCce--eecCCHHHHHHHHHHHHHhCCCC
Confidence 44567778888888778777778877775433221 22344 4999999999999987
No 261
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=27.24 E-value=68 Score=21.74 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHH
Q psy18175 51 HCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDA 95 (132)
Q Consensus 51 ~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A 95 (132)
..+.+-.+.++.+--.---..|.||+.+.++|.+......+.++|
T Consensus 9 l~~~ll~~Kk~kgLsfaDl~~~lG~~ev~vaa~~ygqa~~~~~ea 53 (151)
T COG1513 9 LADALLLAKKKKGLSFADLADGLGLAEVFVAAALYGQAALPADEA 53 (151)
T ss_pred HHHHHHHHHHhcCCcHHHHHhhcCccHHHHHHHHHhhccCCHHHH
Confidence 334444444443434444567899999999998877666665543
No 262
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=27.18 E-value=28 Score=26.49 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=10.2
Q ss_pred CCCcEEEEcCCCC
Q psy18175 61 QDTGVLVHCLAGV 73 (132)
Q Consensus 61 ~~~~VlVHC~~G~ 73 (132)
.+++|+|||..=+
T Consensus 225 SP~RVlIHalDPV 237 (283)
T TIGR02855 225 SPSRVNIHALDPV 237 (283)
T ss_pred CccceEEeccCcc
Confidence 4689999997643
No 263
>TIGR00625 tfb2 Transcription factor tfb2. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.88 E-value=1.5e+02 Score=24.28 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=34.4
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHhh-CCCC------CCCHHHHHHHHHHHHHHH
Q psy18175 73 VSRSVTITVAYLMSALRLSLNDAFTLVRAR-KSNI------APNFHFMEQLNSFEKELM 124 (132)
Q Consensus 73 ~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~-Rp~~------~p~~~~~~qL~~~e~~l~ 124 (132)
+.|.. +--| ...|.+.++-+.+++.. .|.+ ...+....|++.||.+..
T Consensus 333 iTr~S-v~~A---~~~GITa~qIi~fl~~~ahp~~~~~~~~~lP~tv~dQi~lWe~e~~ 387 (448)
T TIGR00625 333 ITRES-IRRA---LANGITAQQIIHYLRTHAHPQMRKEQTPVLPPTIVDQIRLWELERD 387 (448)
T ss_pred ecHHH-HHHH---HHcCCCHHHHHHHHHhcCChhhhccCCCCCChHHHHHHHHHHHHhc
Confidence 55663 3333 25699999999999954 3444 356799999999998753
No 264
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=26.76 E-value=95 Score=22.26 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=20.9
Q ss_pred EcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 68 HCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 68 HC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
+|..|.+...+.-..---++..++.+||++.++..
T Consensus 157 ~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~a 191 (224)
T TIGR03633 157 ATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKA 191 (224)
T ss_pred EEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 35555555544333332334578999999988664
No 265
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=26.65 E-value=56 Score=25.04 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHh
Q psy18175 92 LNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEA 126 (132)
Q Consensus 92 ~~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~~~ 126 (132)
+++-.++|+++|..+..++.-..++..||+.+..+
T Consensus 253 iee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~~~ 287 (299)
T PF03715_consen 253 IEENSKFIESKRSKVDFSPKDQAQVEAFESELKWE 287 (299)
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcccC
Confidence 67778999999999999999999999999988744
No 266
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=26.14 E-value=1.9e+02 Score=21.72 Aligned_cols=84 Identities=7% Similarity=0.054 Sum_probs=49.9
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH----HHHHHHh----cCCC-HHHHHHHHHhhCCC----CCCCHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTIT----VAYLMSA----LRLS-LNDAFTLVRARKSN----IAPNFH 111 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~----~ayLm~~----~~~~-~~~A~~~v~~~Rp~----~~p~~~ 111 (132)
.+.++...+.+.+.++.||.+++|+..........- ..|+.++ ..++ +.+-+..+....-. ......
T Consensus 142 ~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~~h 221 (273)
T PF02353_consen 142 RKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENLGRH 221 (273)
T ss_dssp GGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-HHH
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcCcC
Confidence 356678889999999999999999877666543320 1333333 2333 44444434433222 245778
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy18175 112 FMEQLNSFEKELMEARL 128 (132)
Q Consensus 112 ~~~qL~~~e~~l~~~~~ 128 (132)
+.+.|..|-+++.++..
T Consensus 222 Y~~Tl~~W~~~f~~~~~ 238 (273)
T PF02353_consen 222 YARTLRAWRENFDANRE 238 (273)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999888876654
No 267
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.04 E-value=2.2e+02 Score=24.47 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhc--C-----------CC-HHHHHHHHHhh
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSAL--R-----------LS-LNDAFTLVRAR 102 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~--~-----------~~-~~~A~~~v~~~ 102 (132)
.+.=.+.++.+.++++.|+..++.--.|.|.|.++..+.|-+.. + -+ +.++++.++..
T Consensus 12 y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 12 YPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 34455677778888889999999999999999888877776532 2 12 56677777664
No 268
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=25.97 E-value=95 Score=22.67 Aligned_cols=36 Identities=6% Similarity=0.039 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAY 83 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ay 83 (132)
++++.+++.......+.|.||=.+|+|-|......+
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~ 40 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVA 40 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecc
Confidence 455556655544445678999999999995444333
No 269
>PRK08624 hypothetical protein; Provisional
Probab=25.95 E-value=40 Score=26.78 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=28.7
Q ss_pred EEEcCCCCchHHHHHHHHHHH-----hcCCCHHHHHHHHHhhC
Q psy18175 66 LVHCLAGVSRSVTITVAYLMS-----ALRLSLNDAFTLVRARK 103 (132)
Q Consensus 66 lVHC~~G~~RS~~~~~ayLm~-----~~~~~~~~A~~~v~~~R 103 (132)
+-||..|-|=|+-+. -++|. ..++++.+|++++.+.-
T Consensus 59 ~yhCF~GCGa~GDVf-~Fv~~~~~me~~~lsF~eAve~LA~~a 100 (373)
T PRK08624 59 NFHCYTRCGDIFDVF-ELLCKRLKMEGKALSFSKAIRKITKIL 100 (373)
T ss_pred EEEEeCCCCCCCcee-eehhhhhhccccCCCHHHHHHHHHHHh
Confidence 679998887776554 44555 66899999999998874
No 270
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=25.71 E-value=1.1e+02 Score=21.54 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHh
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAYLMSA 87 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ayLm~~ 87 (132)
.+-|.|+|..|.|-|. .++...++.
T Consensus 3 ~G~i~vytG~GKGKTT-AAlGlalRA 27 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTT-AALGLALRA 27 (172)
T ss_dssp ---EEEEESSSS-HHH-HHHHHHHHH
T ss_pred CcEEEEEeCCCCCchH-HHHHHHHHH
Confidence 4679999999999883 444444443
No 271
>KOG3020|consensus
Probab=25.67 E-value=80 Score=24.32 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHhc------CCC--HHHHHHHHHhh
Q psy18175 50 SHCTFTEEARSQDT-GVLVHCLAGVSRSVTITVAYLMSAL------RLS--LNDAFTLVRAR 102 (132)
Q Consensus 50 ~~~~fi~~~~~~~~-~VlVHC~~G~~RS~~~~~ayLm~~~------~~~--~~~A~~~v~~~ 102 (132)
+.++.+.+....-. +|.|||..|- +-.+.-++... |+. -+++.+.+|..
T Consensus 161 d~~eIl~~~~~~~~~~vvvHsFtGs----~e~~~~~lk~~~yig~~g~~~k~~e~~~vlr~i 218 (296)
T KOG3020|consen 161 DLLEILKRFLPECHKKVVVHSFTGS----AEEAQKLLKLGLYIGFTGCSLKTEENLEVLRSI 218 (296)
T ss_pred HHHHHHHHhccccCCceEEEeccCC----HHHHHHHHHccEEecccceeeechhhHHHHhhC
Confidence 33444444433333 7999999997 33333333321 222 34677777644
No 272
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=25.64 E-value=91 Score=21.59 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=20.9
Q ss_pred EcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 68 HCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 68 HC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
+|..|.+...+.-+.--.++.+++.++|++.++..
T Consensus 125 ~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~ 159 (188)
T cd03764 125 YTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRA 159 (188)
T ss_pred EEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 45555555544433333345578899998887653
No 273
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=25.55 E-value=1.9e+02 Score=22.55 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHH
Q psy18175 49 HSHCTFTEEARSQDTGVLVHCLAGVSRSVTITV 81 (132)
Q Consensus 49 ~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ 81 (132)
.+..+|+..+.+.++.++|....|-|.|..+.+
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~a 197 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSA 197 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 356788888888889999999999999865543
No 274
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=25.37 E-value=1.7e+02 Score=18.01 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHH
Q psy18175 50 SHCTFTEEARSQ--DTGVLVHCLAGVSRSVTITVA 82 (132)
Q Consensus 50 ~~~~fi~~~~~~--~~~VlVHC~~G~~RS~~~~~a 82 (132)
..++.+...... ++.++|+=..|.|.|..+-..
T Consensus 5 ~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 5 EAIEALREALELPPPKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHH
Confidence 344555555544 678999999999999544433
No 275
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=25.36 E-value=1.5e+02 Score=22.66 Aligned_cols=46 Identities=11% Similarity=-0.039 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHHHHhC----CCcEEEEcCCCCchHHHHHHHHHHHhcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQ----DTGVLVHCLAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~----~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
...++.+.++++..... |.++ +..+.+-|+|..-.+.+|....|.+
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~-~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPY-IFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCE-EEEecCCCCCHHHHHHHHHHHcCCC
Confidence 44488888888888876 6665 7778888899888888886666654
No 276
>PRK13530 arsenate reductase; Provisional
Probab=25.27 E-value=1.1e+02 Score=20.10 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTITVAYLM 85 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ayLm 85 (132)
.+||+=|.+...||+. +-+++-
T Consensus 4 ~~vLFvC~~N~cRS~m-AEal~~ 25 (133)
T PRK13530 4 KTIYFLCTGNSCRSQM-AEGWGK 25 (133)
T ss_pred CEEEEEcCCchhHHHH-HHHHHH
Confidence 5799999999999954 444443
No 277
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=25.13 E-value=2e+02 Score=22.04 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHH--hcCCCHHHHHHHHHhhC
Q psy18175 50 SHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMS--ALRLSLNDAFTLVRARK 103 (132)
Q Consensus 50 ~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~--~~~~~~~~A~~~v~~~R 103 (132)
...+.++.+.+.|..|.+||. |...++..+=.. -..++..++++.++..|
T Consensus 116 ~l~~~~~~~~~~g~~v~~H~E----r~~~la~~~g~~l~i~Hiss~~~le~i~~ak 167 (337)
T cd01302 116 TLMRTFLEIASRGGPVMVHAE----RAAQLAEEAGANVHIAHVSSGEALELIKFAK 167 (337)
T ss_pred HHHHHHHHHHhcCCeEEEeHH----HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHH
Confidence 445555666666889999998 332222211000 11356778888887654
No 278
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=24.99 E-value=51 Score=22.16 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTI 79 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~ 79 (132)
.+||+=|.+...||+..
T Consensus 3 ~kVLFVC~gN~cRSpmA 19 (139)
T COG0394 3 MKVLFVCTGNICRSPMA 19 (139)
T ss_pred ceEEEEcCCCcccCHHH
Confidence 58999999999999653
No 279
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=24.82 E-value=1.1e+02 Score=21.68 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=20.8
Q ss_pred EcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 68 HCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 68 HC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
+|..|.+...+....=-.++.+++.+||++.++..
T Consensus 156 ~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~ 190 (211)
T cd03756 156 ATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKA 190 (211)
T ss_pred EEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 45556555543333222334578999999887664
No 280
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=24.75 E-value=88 Score=21.84 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=49.2
Q ss_pred EEeccCCCCCcccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHH--HHH---------hcCCCHHHHHHHHHhhC
Q psy18175 35 FLIVCGWPKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAY--LMS---------ALRLSLNDAFTLVRARK 103 (132)
Q Consensus 35 i~~~D~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ay--Lm~---------~~~~~~~~A~~~v~~~R 103 (132)
+|+.|... .++++.+-+.+....+.|+.++|-|.+=. | .| +++ +..-+++.+++.++.+.
T Consensus 42 iPL~DdDR--~pWL~~l~~~~~~~~~~~~~~vi~CSALK-r------~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~ 112 (161)
T COG3265 42 IPLNDDDR--WPWLEALGDAAASLAQKNKHVVIACSALK-R------SYRDLLREANPGLRFVYLDGDFDLILERMKARK 112 (161)
T ss_pred CCCCcchh--hHHHHHHHHHHHHhhcCCCceEEecHHHH-H------HHHHHHhccCCCeEEEEecCCHHHHHHHHHhcc
Confidence 45544221 67788888888888888888999996521 2 23 111 12346788888888776
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy18175 104 SNIAPNFHFMEQLNSFE 120 (132)
Q Consensus 104 p~~~p~~~~~~qL~~~e 120 (132)
.-..|..=...|+..+|
T Consensus 113 gHFM~~~ll~SQfa~LE 129 (161)
T COG3265 113 GHFMPASLLDSQFATLE 129 (161)
T ss_pred cCCCCHHHHHHHHHHhc
Confidence 66666665666665554
No 281
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=24.71 E-value=1.4e+02 Score=27.87 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=44.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCH-HHHHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNF-HFMEQLN 117 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~~-~~~~qL~ 117 (132)
.-|+..|-++|...... =+=+|-|+.- ++-|||.. |+.+..|+..+...|.+...++ .+...++
T Consensus 1187 dVWlgNAq~lIk~g~~~-Ls~VI~CRDD-------IMvYLI~k-Glep~~AFkIME~VRKGk~lk~~e~~~~Mk 1251 (1444)
T COG2176 1187 DVWLGNAQDLIKSGIAT-LSDVIGCRDD-------IMVYLIHK-GLEPSLAFKIMEFVRKGKGLKPAEYEELMK 1251 (1444)
T ss_pred ccccccHHHHHHhCCcc-hhhheeehHH-------HHHHHHHc-CCCcchHHHHHHHHhccCCCChHHHHHHHH
Confidence 33455555655544322 2345777654 47788876 9999999999999999999986 6555554
No 282
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=24.63 E-value=2e+02 Score=21.87 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=10.1
Q ss_pred hCCCcEEEEcCCC
Q psy18175 60 SQDTGVLVHCLAG 72 (132)
Q Consensus 60 ~~~~~VlVHC~~G 72 (132)
..|..||.||..|
T Consensus 108 ~~g~~ILTh~~S~ 120 (275)
T PRK08335 108 DDGDVIITHSFSS 120 (275)
T ss_pred CCCCEEEEECCcH
Confidence 3567899999873
No 283
>KOG1016|consensus
Probab=24.61 E-value=79 Score=28.20 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNI 106 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~ 106 (132)
.+.-.++...|..++-+.|+=||-|..|. | ++........|++.+|.+|..+
T Consensus 416 eD~~qe~~~li~~AL~~PGPDlVICDEGH-r---------IKN~~A~iS~aLk~IrtrRRiV 467 (1387)
T KOG1016|consen 416 EDQRQEAYSLIRSALLEPGPDLVICDEGH-R---------IKNITAEISMALKAIRTRRRIV 467 (1387)
T ss_pred hhhHHHHHHHHHHHhcCCCCCeEEecCCc-e---------eccchHHHHHHHHHhhhceeEE
Confidence 45567788999999999999999999998 2 2333334666778888877654
No 284
>PRK10126 tyrosine phosphatase; Provisional
Probab=24.43 E-value=78 Score=21.21 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchHHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTITV 81 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ 81 (132)
.+||.=|.+..+||+..-+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa 21 (147)
T PRK10126 3 NNILVVCVGNICRSPTAER 21 (147)
T ss_pred CeEEEEcCCcHhHHHHHHH
Confidence 5799999999999975443
No 285
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=24.41 E-value=85 Score=21.06 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchHHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVTITV 81 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~~~~ 81 (132)
.+||+=|.+-.+||+..-+
T Consensus 3 ~~ILfVC~gN~cRSpmAEa 21 (144)
T PRK11391 3 NSILVVCTGNICRSPIGER 21 (144)
T ss_pred CeEEEEcCCcHhHHHHHHH
Confidence 4799999999999965433
No 286
>KOG1158|consensus
Probab=24.38 E-value=4.6e+02 Score=22.66 Aligned_cols=59 Identities=15% Similarity=0.005 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHhC-CCcEEEEcCCC-CchHHHHHHHH-HHHhcCCCHHHHHHHHHhhCCC
Q psy18175 47 FNHSHCTFTEEARSQ-DTGVLVHCLAG-VSRSVTITVAY-LMSALRLSLNDAFTLVRARKSN 105 (132)
Q Consensus 47 ~~~~~~~fi~~~~~~-~~~VlVHC~~G-~~RS~~~~~ay-Lm~~~~~~~~~A~~~v~~~Rp~ 105 (132)
.+.+-.+-|.+++.+ |+.+||+-.++ +.|...=++.= +....+++-.+|.++++..|-.
T Consensus 576 ~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~ 637 (645)
T KOG1158|consen 576 RLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKS 637 (645)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhc
Confidence 355556667777744 89999999888 88887655544 4556679999999999887643
No 287
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=24.31 E-value=1.1e+02 Score=23.24 Aligned_cols=44 Identities=7% Similarity=-0.089 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH---HHHHHHhcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTIT---VAYLMSALRLS 91 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~---~ayLm~~~~~~ 91 (132)
.+.+.++++.+-+.+.++++|++ |. .|-|+.++ ++.+.-.+|.+
T Consensus 45 l~~I~~av~~~~~~l~~ggrI~~-~G--aGtSg~la~~da~e~~~tfg~~ 91 (299)
T PRK05441 45 LPQIAAAVDAAAAALRQGGRLIY-IG--AGTSGRLGVLDASECPPTFGVP 91 (299)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE-Ec--CcHHHHHHHHHHHhCcCccCCC
Confidence 44566667777777888887655 33 33344433 34444455554
No 288
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.07 E-value=2e+02 Score=19.60 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=24.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTIT 80 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~ 80 (132)
.+.+.++++.|.+++.++++|++. |.|.|..++
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 567889999999998888888765 455554443
No 289
>PF11237 DUF3038: Protein of unknown function (DUF3038); InterPro: IPR021399 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=23.94 E-value=2.7e+02 Score=19.68 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q psy18175 75 RSVTITVAYLMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 75 RS~~~~~ayLm~~~~~~~~~A~~~v~~~R 103 (132)
||-+++++||.+...--+.+++..+....
T Consensus 70 raLV~Iic~lA~~~~~lIRqll~~~eQ~~ 98 (171)
T PF11237_consen 70 RALVLIICYLAKQLQPLIRQLLLLLEQMS 98 (171)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55578899988887777888886665553
No 290
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=23.89 E-value=1.8e+02 Score=20.09 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchHHH-HHHHHHHH
Q psy18175 63 TGVLVHCLAGVSRSVT-ITVAYLMS 86 (132)
Q Consensus 63 ~~VlVHC~~G~~RS~~-~~~ayLm~ 86 (132)
|-|.|+|..|.|.|.+ +..|+-..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~ 27 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL 27 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999998833 33444333
No 291
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=23.88 E-value=40 Score=22.65 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.5
Q ss_pred CCCchHHHHHHH-HHH
Q psy18175 71 AGVSRSVTITVA-YLM 85 (132)
Q Consensus 71 ~G~~RS~~~~~a-yLm 85 (132)
.|.+||||-.+. .|+
T Consensus 6 ~G~~RSGTTlL~~~Ll 21 (215)
T PF13469_consen 6 VGMPRSGTTLLSRRLL 21 (215)
T ss_dssp ECSTTSSHHHHH-HHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 378899999888 777
No 292
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.83 E-value=1.3e+02 Score=23.67 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=17.4
Q ss_pred cccHHHHHHHHHHHHhCCC--cEEEEcCCCCchH
Q psy18175 45 SKFNHSHCTFTEEARSQDT--GVLVHCLAGVSRS 76 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~--~VlVHC~~G~~RS 76 (132)
...++++++.+ ++.|. -+|.||..++--.
T Consensus 159 ~~ei~~av~~~---r~~g~~~i~LLhC~s~YPap 189 (347)
T COG2089 159 IEEIEEAVAIL---RENGNPDIALLHCTSAYPAP 189 (347)
T ss_pred HHHHHHHHHHH---HhcCCCCeEEEEecCCCCCC
Confidence 33444455444 44444 4999999877433
No 293
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=23.59 E-value=1.1e+02 Score=23.83 Aligned_cols=31 Identities=10% Similarity=-0.094 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC---CCchHHH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLA---GVSRSVT 78 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~---G~~RS~~ 78 (132)
+.++.+..+-+.+.|-++.+||.. |++.+++
T Consensus 251 it~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~ 284 (361)
T cd03322 251 ITPARKIADLASLYGVRTGWHGPTDLSPVGMAAA 284 (361)
T ss_pred HHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHH
Confidence 777788888888899999999964 4555544
No 294
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=23.44 E-value=1.7e+02 Score=17.74 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=12.8
Q ss_pred EEEEcCCCCchHH-HHHHHHHHH
Q psy18175 65 VLVHCLAGVSRSV-TITVAYLMS 86 (132)
Q Consensus 65 VlVHC~~G~~RS~-~~~~ayLm~ 86 (132)
+++.++.|.|.|. +..+|+.+.
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~ 25 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALA 25 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHH
Confidence 3566788888885 333444333
No 295
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=23.36 E-value=2.4e+02 Score=18.90 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC
Q psy18175 46 KFNHSHCTFTEEARSQ--DTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNI 106 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~--~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp~~ 106 (132)
..+....+.+.+..++ ++-|++=| +=||+.++| ++.+++++...|-.+
T Consensus 58 t~L~~l~~~i~~fl~~~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD~~ 107 (136)
T PF05763_consen 58 TNLHKLLDTIVRFLKENGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKDYA 107 (136)
T ss_pred hhhHHHHHHHHHHHHhCCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHHHe
Confidence 3444444444444443 56788888 579999888 677777777776444
No 296
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=23.34 E-value=1.3e+02 Score=18.34 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.0
Q ss_pred CcEE-EEcCCCCchHHHHHHHH
Q psy18175 63 TGVL-VHCLAGVSRSVTITVAY 83 (132)
Q Consensus 63 ~~Vl-VHC~~G~~RS~~~~~ay 83 (132)
++|| |=|..|+|-+..+++||
T Consensus 40 K~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 40 KKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp SEEEEES-SSHHHHHHHHHHHH
T ss_pred ceEEEEecCCcccHHHHHHHHh
Confidence 5666 67999999999999887
No 297
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=23.30 E-value=2.4e+02 Score=20.29 Aligned_cols=48 Identities=17% Similarity=0.005 Sum_probs=32.7
Q ss_pred EEeccCCCCC----cccHHHHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHH
Q psy18175 35 FLIVCGWPKG----SKFNHSHCTFTEEARSQDT-GVLVHCLAGVSRSVTITVA 82 (132)
Q Consensus 35 i~~~D~~~~~----~~~~~~~~~fi~~~~~~~~-~VlVHC~~G~~RS~~~~~a 82 (132)
-|+.+...+. ......+...++..+..+. .++|+=..|.|.|..+-..
T Consensus 11 ~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 11 KPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 3445444443 4556778888887776644 6889999999999554433
No 298
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=23.07 E-value=1.1e+02 Score=21.51 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=23.5
Q ss_pred EEEEc-CCCCchHHHHHHHHHHHhcCCC
Q psy18175 65 VLVHC-LAGVSRSVTITVAYLMSALRLS 91 (132)
Q Consensus 65 VlVHC-~~G~~RS~~~~~ayLm~~~~~~ 91 (132)
+.||. ..|-||++-+.+-+++...|.+
T Consensus 120 ~~IHPF~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 120 VAIHPFPNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred heecCcCCCCcHHHHHHHHHHHHHCCCC
Confidence 67898 7899999999999988888864
No 299
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=23.03 E-value=1.2e+02 Score=20.97 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=19.1
Q ss_pred EcCCCCchHHHHHHHHHHH--hcCCCHHHHHHHHHhh
Q psy18175 68 HCLAGVSRSVTITVAYLMS--ALRLSLNDAFTLVRAR 102 (132)
Q Consensus 68 HC~~G~~RS~~~~~ayLm~--~~~~~~~~A~~~v~~~ 102 (132)
+|..|.+.. .+..+|=. +.+++.++|++.++..
T Consensus 126 ~~a~G~g~~--~~~~~Le~~~~~~~s~~ea~~l~~~~ 160 (185)
T TIGR03634 126 YTATGSGSP--VAYGVLEDEYREDMSVEEAKKLAVRA 160 (185)
T ss_pred EEEEcCcHH--HHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 344454444 34444433 3468899998887653
No 300
>PRK05568 flavodoxin; Provisional
Probab=22.99 E-value=2.2e+02 Score=18.40 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=34.6
Q ss_pred CCCcEEEEcCCCCc--hHHHHHHHHHHHhcCCCH-HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHH
Q psy18175 61 QDTGVLVHCLAGVS--RSVTITVAYLMSALRLSL-NDAFTLVRARKSNIAPNFHFMEQLNSFEKELM 124 (132)
Q Consensus 61 ~~~~VlVHC~~G~~--RS~~~~~ayLm~~~~~~~-~~A~~~v~~~Rp~~~p~~~~~~qL~~~e~~l~ 124 (132)
+|+++.+-+..|.+ .+.-.+.. .+...|+.. .+.+ +-.-.|+..-+++..+|-+.+.
T Consensus 81 ~~k~~~~f~t~G~~~~~~~~~~~~-~l~~~g~~~~~~~~------~~~~~p~~~~l~~~~~~g~~l~ 140 (142)
T PRK05568 81 KGKKLVLFGSYGWGDGEWMRDWVE-RMEGYGANLVNEGL------IVNNTPEGEGIEKCKALGEALA 140 (142)
T ss_pred CCCEEEEEEccCCCCChHHHHHHH-HHHHCCCEEeCCcE------EEecCCCHHHHHHHHHHHHHHH
Confidence 57888888888875 33333333 345555552 2211 1112588999999998887764
No 301
>PHA02593 62 clamp loader small subunit; Provisional
Probab=22.76 E-value=2.7e+02 Score=20.04 Aligned_cols=52 Identities=10% Similarity=0.039 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Q psy18175 53 TFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKS 104 (132)
Q Consensus 53 ~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~Rp 104 (132)
+|.-.++..|++--..-..+-.-.-.+.+..++.+++.+.++|.++++-.-+
T Consensus 100 dYll~sVrkgKRy~~WAKl~ed~e~~~~i~ll~~~Y~vn~~kA~eyl~iltk 151 (191)
T PHA02593 100 NYLLASVRKGKRYGKWAKLTEDSEEKLIIKLLAKAYSVNTDDAREYLDILKK 151 (191)
T ss_pred HHHHHhccCcccCchhhccCcchHHHHHHHHHHHHhCCCHHHHHHHHHHhcc
Confidence 4444455555544444444444444678888999999999999999987644
No 302
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=22.73 E-value=2.1e+02 Score=21.79 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=35.3
Q ss_pred HHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHH-HHHhcCC---CHHHHHHHHHhhC
Q psy18175 51 HCTFTEEARS--QDTGVLVHCLAGVSRSVTITVAY-LMSALRL---SLNDAFTLVRARK 103 (132)
Q Consensus 51 ~~~fi~~~~~--~~~~VlVHC~~G~~RS~~~~~ay-Lm~~~~~---~~~~A~~~v~~~R 103 (132)
+++.++++.. ...+++++-..|.|.|.+++=+. .....|| ...+|..++....
T Consensus 10 l~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp~a~~~~~~~~ 68 (309)
T PF10236_consen 10 LINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVPSAQDWVNGTT 68 (309)
T ss_pred HHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcCCHHHHhhCCe
Confidence 3455555522 34689999999999999887443 3445565 4667777777553
No 303
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=22.67 E-value=1.3e+02 Score=15.60 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Q psy18175 78 TITVAYLMSALRLSLNDAFTLVR 100 (132)
Q Consensus 78 ~~~~ayLm~~~~~~~~~A~~~v~ 100 (132)
..+..|| ...+|+++.|+...=
T Consensus 16 ~~A~~~L-~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 16 DVAIQYL-EANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHH-HHTTT-HHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHHH
Confidence 4455554 455888888887653
No 304
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=22.59 E-value=4.6e+02 Score=22.21 Aligned_cols=50 Identities=8% Similarity=-0.043 Sum_probs=34.5
Q ss_pred HHHHHHhCCCcEEEEcCC-CCchHHHHHHH-HHHHhcCCCHHHHHHHHHhhC
Q psy18175 54 FTEEARSQDTGVLVHCLA-GVSRSVTITVA-YLMSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 54 fi~~~~~~~~~VlVHC~~-G~~RS~~~~~a-yLm~~~~~~~~~A~~~v~~~R 103 (132)
-+.+.+.+|..+||+=.+ ++.+.+--++. .++...+++.++|-+++++.+
T Consensus 539 ~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~ 590 (600)
T PRK10953 539 ELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 590 (600)
T ss_pred HHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344455677889987664 58777554433 345667899999988887764
No 305
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=22.58 E-value=1.2e+02 Score=14.98 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=15.9
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy18175 71 AGVSRSVTITVAYLMSALRLSLNDAFTLVR 100 (132)
Q Consensus 71 ~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~ 100 (132)
.|+++.-+..+. ...+.+.+.|..++.
T Consensus 11 mGf~~~~~~~AL---~~~~~d~~~A~~~L~ 37 (38)
T cd00194 11 MGFSREEARKAL---RATNNNVERAVEWLL 37 (38)
T ss_pred cCCCHHHHHHHH---HHhCCCHHHHHHHHh
Confidence 377766444443 233558888887763
No 306
>PRK14017 galactonate dehydratase; Provisional
Probab=22.49 E-value=1.3e+02 Score=23.60 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC-CCchHHHH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLA-GVSRSVTI 79 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~-G~~RS~~~ 79 (132)
+..+.+..+-+...|-++.+||.. +++.++++
T Consensus 265 it~~~~ia~~A~~~gi~~~~h~~~~~i~~aa~~ 297 (382)
T PRK14017 265 ITECRKIAAMAEAYDVALAPHCPLGPIALAACL 297 (382)
T ss_pred HHHHHHHHHHHHHcCCeEeecCCCCHHHHHHHH
Confidence 677778888888889999999964 34554443
No 307
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=22.49 E-value=1e+02 Score=19.23 Aligned_cols=25 Identities=8% Similarity=-0.130 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchH
Q psy18175 52 CTFTEEARSQDTGVLVHCLAGVSRS 76 (132)
Q Consensus 52 ~~fi~~~~~~~~~VlVHC~~G~~RS 76 (132)
+.++-...+...+|.|||..|-+|.
T Consensus 16 ~~~~~~~~~~~~~V~i~l~~~~~r~ 40 (89)
T PTZ00138 16 INQIFRFFTEKTRVQIWLYDHPNLR 40 (89)
T ss_pred HHHHHHHhcCCcEEEEEEEeCCCcE
Confidence 4555666667789999998887654
No 308
>PRK10812 putative DNAse; Provisional
Probab=22.47 E-value=1.7e+02 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCchH
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVSRS 76 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS 76 (132)
..-.-..++-+.+.+.+|.|||..+....
T Consensus 110 ~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~ 138 (265)
T PRK10812 110 QESFRHHIQIGRELNKPVIVHTRDARADT 138 (265)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCchHHH
Confidence 33344455556667788889987766533
No 309
>PLN02806 complex I subunit
Probab=22.46 E-value=1.1e+02 Score=18.71 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy18175 107 APNFHFMEQLNSFEKELMEAR 127 (132)
Q Consensus 107 ~p~~~~~~qL~~~e~~l~~~~ 127 (132)
.....|..||.+||.+|+++-
T Consensus 40 G~GA~~~n~l~~we~kL~edl 60 (81)
T PLN02806 40 GLGAVFANQLVKWEVKLKEDL 60 (81)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999987764
No 310
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=22.45 E-value=2.4e+02 Score=19.32 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHH
Q psy18175 62 DTGVLVHCLAGVSRSVTITVAY 83 (132)
Q Consensus 62 ~~~VlVHC~~G~~RS~~~~~ay 83 (132)
|+.++|....|.|.|-+.+++.
T Consensus 36 ~~~~li~~~TG~GKT~~~~~~~ 57 (203)
T cd00268 36 GRDVIGQAQTGSGKTAAFLIPI 57 (203)
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 7889999999999996654443
No 311
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=22.26 E-value=3.1e+02 Score=24.70 Aligned_cols=69 Identities=13% Similarity=0.008 Sum_probs=41.9
Q ss_pred EEEeccCCCCC-cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcC---------CCHHHHHHHHHhhC
Q psy18175 34 VFLIVCGWPKG-SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALR---------LSLNDAFTLVRARK 103 (132)
Q Consensus 34 ~i~~~D~~~~~-~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~---------~~~~~A~~~v~~~R 103 (132)
+...+|.-..+ ...+.++++.|.+..++|.+|||-|.. ...+=.++-++...| .+..+|-...+.-+
T Consensus 420 R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s---v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~ 496 (908)
T PRK13107 420 RKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS---IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGR 496 (908)
T ss_pred ceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc---HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCC
Confidence 33344444444 567889999999999999999999954 222333344444434 33455555554444
Q ss_pred CC
Q psy18175 104 SN 105 (132)
Q Consensus 104 p~ 105 (132)
+.
T Consensus 497 ~G 498 (908)
T PRK13107 497 TG 498 (908)
T ss_pred CC
Confidence 43
No 312
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=22.16 E-value=2.6e+02 Score=19.91 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 52 CTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 52 ~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
.+++.+....+.+|+|-|..|-+=.=.+++|-+....+.
T Consensus 35 a~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v 73 (205)
T TIGR00197 35 AQAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGV 73 (205)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCC
Confidence 444444444567899999999876655555554443443
No 313
>PRK10425 DNase TatD; Provisional
Probab=22.09 E-value=1.9e+02 Score=21.49 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCch
Q psy18175 48 NHSHCTFTEEARSQDTGVLVHCLAGVSR 75 (132)
Q Consensus 48 ~~~~~~fi~~~~~~~~~VlVHC~~G~~R 75 (132)
.+-.-.+++-+.+.+.+|.|||..-...
T Consensus 107 ~~vF~~ql~lA~~~~~Pv~iH~r~a~~~ 134 (258)
T PRK10425 107 ERAFVAQLAIAAELNMPVFMHCRDAHER 134 (258)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCchHH
Confidence 3444556666677788888888754433
No 314
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=22.08 E-value=1.5e+02 Score=22.20 Aligned_cols=29 Identities=14% Similarity=-0.115 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGV 73 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~ 73 (132)
....+++.+.|.+.+.+|.+|+|.+..+.
T Consensus 71 ~~~~~~~~~~l~~~l~~g~pv~~~~D~~~ 99 (317)
T PF14399_consen 71 FSSPDEAWEELKEALDAGRPVIVWVDMYY 99 (317)
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecccc
Confidence 45578899999999999999999877554
No 315
>PLN02150 terpene synthase/cyclase family protein
Probab=22.05 E-value=1.2e+02 Score=19.07 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 77 VTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 77 ~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
++-+-+| |+.+|.+.++|.+.++..
T Consensus 7 aSsIeCY-Mke~g~seeeA~~~i~~l 31 (96)
T PLN02150 7 ANGVNCY-MKQHGVTKEEAVSELKKM 31 (96)
T ss_pred hHHHHHH-hccCCCCHHHHHHHHHHH
Confidence 4555566 556699999998887654
No 316
>PRK02249 DNA primase large subunit; Validated
Probab=22.04 E-value=3.3e+02 Score=21.41 Aligned_cols=50 Identities=8% Similarity=0.153 Sum_probs=37.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
...++.++.-|...+..|++ +.-.+-+.++-++...|++.++++.+.+..
T Consensus 219 ~~~fPpCm~~l~~~l~~g~~--------L~h~~R~~l~~FL~~iG~~~deil~~~~~~ 268 (343)
T PRK02249 219 PELFPPCMKALLSALQAGEN--------LPHTARFAITSFLLNIGMSVDEIVELFRNA 268 (343)
T ss_pred cccCCHHHHHHHHHHHcCCC--------CChHHHHHHHHHHHhcCCCHHHHHHHHhhC
Confidence 55677777777777766543 455677887777888899999999999763
No 317
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=21.92 E-value=2.1e+02 Score=20.34 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCC
Q psy18175 49 HSHCTFTEEARSQDTGVLVHCLAG 72 (132)
Q Consensus 49 ~~~~~fi~~~~~~~~~VlVHC~~G 72 (132)
+.....++.+.+.|.+|.+||...
T Consensus 108 ~~~~~~~~~a~~~~~pv~iH~~~~ 131 (252)
T TIGR00010 108 EVFRAQLQLAEELNLPVIIHARDA 131 (252)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCc
Confidence 334444666777889999999753
No 318
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=21.92 E-value=1.8e+02 Score=19.64 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=15.1
Q ss_pred EEEEcCCCCchHHHHH-HHHHHHhcC
Q psy18175 65 VLVHCLAGVSRSVTIT-VAYLMSALR 89 (132)
Q Consensus 65 VlVHC~~G~~RS~~~~-~ayLm~~~~ 89 (132)
+.+....|.|.|.+.+ +|......|
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g 27 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKG 27 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCccHHHHHHHHHhcccccc
Confidence 3567888999885443 444444444
No 319
>PRK03996 proteasome subunit alpha; Provisional
Probab=21.84 E-value=1.3e+02 Score=21.79 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=20.2
Q ss_pred EcCCCCchHHHHHHHHHHH--hcCCCHHHHHHHHHhh
Q psy18175 68 HCLAGVSRSVTITVAYLMS--ALRLSLNDAFTLVRAR 102 (132)
Q Consensus 68 HC~~G~~RS~~~~~ayLm~--~~~~~~~~A~~~v~~~ 102 (132)
+|..|.+... +..+|=. ..+++.++|++.+...
T Consensus 164 ~~a~G~g~~~--~~~~Le~~~~~~~s~eeai~l~~~a 198 (241)
T PRK03996 164 ATAIGAGRDT--VMEFLEKNYKEDLSLEEAIELALKA 198 (241)
T ss_pred EEEECCCcHH--HHHHHHHhcccCCCHHHHHHHHHHH
Confidence 4555655543 3444443 4478999998887653
No 320
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=21.79 E-value=2.8e+02 Score=20.32 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=31.2
Q ss_pred ceEEEEEeccCCCCC----cccHHHHHHHHHHHHhCCCcEEEEcCCCCc
Q psy18175 30 HTCQVFLIVCGWPKG----SKFNHSHCTFTEEARSQDTGVLVHCLAGVS 74 (132)
Q Consensus 30 ~~~~~i~~~D~~~~~----~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~ 74 (132)
+.+..+|....+... ...-.+.++.++.+.++|+.|..|-..-..
T Consensus 32 f~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHGYtHq~ 80 (243)
T PF10096_consen 32 FSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHGYTHQY 80 (243)
T ss_pred EEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEecceec
Confidence 445556655444432 344677888899999999999999766555
No 321
>KOG3425|consensus
Probab=21.73 E-value=1.9e+02 Score=19.33 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHHHh-C-CCcEEEEcCCCC
Q psy18175 45 SKFNHSHCTFTEEARS-Q-DTGVLVHCLAGV 73 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~-~-~~~VlVHC~~G~ 73 (132)
.+..-.|-..|.++++ . .+..+|||..|-
T Consensus 45 CPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 45 CPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred CchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 6667777778888877 2 467899999985
No 322
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=21.62 E-value=2.5e+02 Score=21.02 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCC--cEEEEcCCCCchHHHH
Q psy18175 49 HSHCTFTEEARSQDT--GVLVHCLAGVSRSVTI 79 (132)
Q Consensus 49 ~~~~~fi~~~~~~~~--~VlVHC~~G~~RS~~~ 79 (132)
+.+.+.+.++.+.+. .+++|=-.|.|.|.++
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 346677777777766 7999999999999544
No 323
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.55 E-value=1.4e+02 Score=21.17 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=19.9
Q ss_pred cCCCCchHHHHHHHHHHHh--cCCCHHHHHHHHHhh
Q psy18175 69 CLAGVSRSVTITVAYLMSA--LRLSLNDAFTLVRAR 102 (132)
Q Consensus 69 C~~G~~RS~~~~~ayLm~~--~~~~~~~A~~~v~~~ 102 (132)
|..|.+. ..+..+|=.. ..|+.+||++.+...
T Consensus 157 ~a~G~gs--~~~~~~Le~~~~~~ms~eeai~l~~~~ 190 (207)
T cd03755 157 NAIGRNS--KTVREFLEKNYKEEMTRDDTIKLAIKA 190 (207)
T ss_pred EEECCCC--HHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 4445433 4455555443 368899999987664
No 324
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=21.44 E-value=1.3e+02 Score=21.98 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLA 71 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~ 71 (132)
...+..|+.||....++|++||+-++.
T Consensus 45 ~~~L~~A~~~i~~~~~~~g~iLfV~tk 71 (225)
T TIGR01011 45 LQLLKEAYNFVKDVAANGGKILFVGTK 71 (225)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 677999999999999999999987764
No 325
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=21.24 E-value=1.3e+02 Score=18.11 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHhcCCCHHHHHHHHHhhC
Q psy18175 85 MSALRLSLNDAFTLVRARK 103 (132)
Q Consensus 85 m~~~~~~~~~A~~~v~~~R 103 (132)
....|++.++|++.+...|
T Consensus 63 ~~~~g~~~~~ai~~le~~R 81 (81)
T PF12550_consen 63 ANERGISEEEAIEILEEIR 81 (81)
T ss_pred HHHcCCCHHHHHHHHHhcC
Confidence 3456889999998887665
No 326
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.09 E-value=1.3e+02 Score=21.05 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHh--c--CCCHHHHHHHHHhh
Q psy18175 75 RSVTITVAYLMSA--L--RLSLNDAFTLVRAR 102 (132)
Q Consensus 75 RS~~~~~ayLm~~--~--~~~~~~A~~~v~~~ 102 (132)
.....+..+|=.. . +|+.+||++.+.+.
T Consensus 136 ~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~ 167 (197)
T cd03760 136 FGAYLALPLLREAWEKKPDLTEEEARALIEEC 167 (197)
T ss_pred cHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 3344555555443 3 57899998887654
No 327
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=21.00 E-value=3.2e+02 Score=20.16 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCcEEE------EcCCCCchHHHHHHHHHH-------HhcCCCHHHHHHHHHh
Q psy18175 51 HCTFTEEARSQDTGVLV------HCLAGVSRSVTITVAYLM-------SALRLSLNDAFTLVRA 101 (132)
Q Consensus 51 ~~~fi~~~~~~~~~VlV------HC~~G~~RS~~~~~ayLm-------~~~~~~~~~A~~~v~~ 101 (132)
..+.+....+.=+++++ |+..|.+=|+...+++++ ...|++.++|.+.+..
T Consensus 145 ~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 145 HIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44555555554355666 977777655433333333 3568898888777655
No 328
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=21.00 E-value=65 Score=17.07 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhCCCCCCC
Q psy18175 81 VAYLMSALRLSLNDAFTLVRARKSNIAPN 109 (132)
Q Consensus 81 ~ayLm~~~~~~~~~A~~~v~~~Rp~~~p~ 109 (132)
-.||...-+-.+.+|+..+-..||. .|-
T Consensus 3 r~YL~~~v~p~L~~gL~~l~~~rP~-DPi 30 (42)
T PF05186_consen 3 RQYLKETVGPVLTEGLAELAKERPE-DPI 30 (42)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHH--S-SHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHCCC-ChH
Confidence 4688887776799999999999984 443
No 329
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=20.92 E-value=1e+02 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.005 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCL 70 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~ 70 (132)
...+..+++-|.+..+.|.+|||=|.
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~ 457 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTA 457 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 56688999999999999999999983
No 330
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=20.83 E-value=1e+02 Score=22.81 Aligned_cols=32 Identities=19% Similarity=0.049 Sum_probs=18.0
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy18175 71 AGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 102 (132)
Q Consensus 71 ~G~~RS~~~~~ayLm~~~~~~~~~A~~~v~~~ 102 (132)
.|.|+.-+....-=.++.+++.+||++.+++.
T Consensus 167 ~G~gs~~~~~~Le~~~k~dms~eEai~l~~ka 198 (247)
T PTZ00488 167 CGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRA 198 (247)
T ss_pred EccCHHHHHHHHHhcCcCCCCHHHHHHHHHHH
Confidence 34444433333322334478899999887663
No 331
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.77 E-value=1.2e+02 Score=16.46 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhCC
Q psy18175 78 TITVAYLMSALRLSLNDAFTLVRARKS 104 (132)
Q Consensus 78 ~~~~ayLm~~~~~~~~~A~~~v~~~Rp 104 (132)
.++++ .....|++..+-+..+|.++.
T Consensus 12 vIil~-If~~iGl~IyQkikqIrgKkk 37 (49)
T PF11044_consen 12 VIILG-IFAWIGLSIYQKIKQIRGKKK 37 (49)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhhh
Confidence 34444 344458888888888887763
No 332
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=20.75 E-value=1.3e+02 Score=19.24 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHH--HHHhcCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAY--LMSALRLS 91 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ay--Lm~~~~~~ 91 (132)
.+.|.+.++.+.. ..+..|+|.-..-++|++.-+..+ .+...|..
T Consensus 51 R~~~~~ll~~~~~--~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi~ 97 (137)
T cd00338 51 RPGLQRLLADVKA--GKIDVVLVEKLDRLSRNLVDLLELLELLEAHGVR 97 (137)
T ss_pred CHHHHHHHHHHHc--CCCCEEEEEecchhhCCHHHHHHHHHHHHHCCCE
Confidence 5566666665554 356789999999999998644433 33334544
No 333
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.74 E-value=3.4e+02 Score=20.55 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=51.5
Q ss_pred ccHHHHHHHHHHHHhCCCcEE---EEcCCCCchHHHHHHHHHHH-hcCCCHHHHHHHHHhhC---CCC------CCCHHH
Q psy18175 46 KFNHSHCTFTEEARSQDTGVL---VHCLAGVSRSVTITVAYLMS-ALRLSLNDAFTLVRARK---SNI------APNFHF 112 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~~~~Vl---VHC~~G~~RS~~~~~ayLm~-~~~~~~~~A~~~v~~~R---p~~------~p~~~~ 112 (132)
+.++...+++....+.|--++ |-=+.=+-=-+++-.|.+-. ..|++++++++.++..| +.+ .-|+-|
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 455666777776666543222 11111111225777776544 45999999999999999 332 468888
Q ss_pred HHHHHHHHHHHHHh
Q psy18175 113 MEQLNSFEKELMEA 126 (132)
Q Consensus 113 ~~qL~~~e~~l~~~ 126 (132)
..-+.+|-+.+...
T Consensus 108 ~~Gie~F~~~~~~~ 121 (265)
T COG0159 108 NYGIEKFLRRAKEA 121 (265)
T ss_pred HhhHHHHHHHHHHc
Confidence 88888887776543
No 334
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=20.73 E-value=2.5e+02 Score=18.23 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcC-CCCchHHHHHHHHHHHhcCC----CHHHHHHHHHhhC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCL-AGVSRSVTITVAYLMSALRL----SLNDAFTLVRARK 103 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~-~G~~RS~~~~~ayLm~~~~~----~~~~A~~~v~~~R 103 (132)
...++.+...+....+. |+. .|--|++.+++..++..+|. +.+++.+++...-
T Consensus 48 ~~i~~kAa~l~~~l~~~------HpF~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA 105 (121)
T TIGR01550 48 TDIFEVSAVLLYALIRS------HPFNNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVA 105 (121)
T ss_pred CCHHHHHHHHHHHHHHh------CCCccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHH
Confidence 44566666666655543 332 45569999999998888874 4666777776663
No 335
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=20.68 E-value=1.1e+02 Score=20.14 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q psy18175 64 GVLVHCLAGVSRSVTI 79 (132)
Q Consensus 64 ~VlVHC~~G~~RS~~~ 79 (132)
+||+=|.+...||+..
T Consensus 2 ~iLfvc~~N~~RS~mA 17 (141)
T cd00115 2 KVLFVCTGNICRSPMA 17 (141)
T ss_pred eEEEEecChhhhhHHH
Confidence 6999999999999543
No 336
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=20.64 E-value=78 Score=18.20 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHhhCCCCCCC
Q psy18175 90 LSLNDAFTLVRARKSNIAPN 109 (132)
Q Consensus 90 ~~~~~A~~~v~~~Rp~~~p~ 109 (132)
++.++-..-++..||.+.+.
T Consensus 30 it~~DF~~Al~~~kpSVs~~ 49 (62)
T PF09336_consen 30 ITMEDFEEALKKVKPSVSQE 49 (62)
T ss_dssp BCHHHHHHHHHTCGGSS-HH
T ss_pred CCHHHHHHHHHHcCCCCCHH
Confidence 56777788888888877654
No 337
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=20.60 E-value=2.7e+02 Score=20.01 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHH
Q psy18175 45 SKFNHSHCTFTEEARS----QDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAF 96 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~----~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~ 96 (132)
.+....+..++++.+. .+++|+|=|.+|+-|+ ++++ ..++++++..
T Consensus 153 ~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~---~~~~~~~~~~ 202 (228)
T PRK14116 153 KVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKY---IENISDEDIM 202 (228)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHH---HhCCCHHHHH
Confidence 3445556777766442 4678999999988775 2222 2367766543
No 338
>cd00424 PolY Y-family of DNA polymerases. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Most TLS polymerases are members of the Y-family, including Pol eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is found exclusively in bacteria. In eukaryotes, the B-family polymerase Pol zeta also functions as a TLS polymerase. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in ord
Probab=20.53 E-value=1.1e+02 Score=23.57 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcC----CCHHHHHHHHHhhCCCC---CCCHHHHHHHH
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALR----LSLNDAFTLVRARKSNI---APNFHFMEQLN 117 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~----~~~~~A~~~v~~~Rp~~---~p~~~~~~qL~ 117 (132)
.+.|...++-...-.-.+++|.|- ..+-+|+..+++.|-.+.+| |+..+|.+. -|.. .++...+.++.
T Consensus 5 ~d~F~as~e~~~~p~l~~~Pv~V~-~~~~~~~~V~a~sy~Ar~~GV~~gm~~~~A~~l----cP~l~~~~~~~~~y~~~s 79 (343)
T cd00424 5 FDNFFASVEQLARPELKGRPVVVV-PFNSDSTCVIACSYEARKYGVKRGMPVREARKM----CPNLILVPARLDLYRRLS 79 (343)
T ss_pred cchHHHHHHhhhCccccCCCEEEe-cCCCCCeEEEEeCHHHHHhCCCCCCcHHHHHHh----CCCeEEECCCcHHHHHHH
Confidence 344555555544444456777763 22334566778889888775 566666554 4543 45655555544
No 339
>PRK02866 cyanate hydratase; Validated
Probab=20.41 E-value=97 Score=21.30 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhcCCCHHHHHHH
Q psy18175 50 SHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTL 98 (132)
Q Consensus 50 ~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~~~~~A~~~ 98 (132)
+..+.|.++..+.+-..=.-...+|+|.+.+++.+.-....+.++|-..
T Consensus 5 ~~~e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kl 53 (147)
T PRK02866 5 ELTEKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKV 53 (147)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 3445555555554433333344556777777776665556666555433
No 340
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=20.39 E-value=71 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHHHhC------CCcEEEEcCCCCchHH
Q psy18175 46 KFNHSHCTFTEEARSQ------DTGVLVHCLAGVSRSV 77 (132)
Q Consensus 46 ~~~~~~~~fi~~~~~~------~~~VlVHC~~G~~RS~ 77 (132)
..+...-.|+...... +....+=|.+|+||=.
T Consensus 33 ~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVT 70 (218)
T PF05891_consen 33 IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVT 70 (218)
T ss_dssp HHHHHHHHHHHCCCT---------SEEEEET-TTTHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhH
Confidence 3456667777775554 3578899999999963
No 341
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=20.37 E-value=2.1e+02 Score=20.25 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCC
Q psy18175 51 HCTFTEEARSQDTGVLVHCLAG 72 (132)
Q Consensus 51 ~~~fi~~~~~~~~~VlVHC~~G 72 (132)
.-.+++.+.+.+.+|.|||..+
T Consensus 110 ~~~~~~~a~e~~~pv~iH~~~~ 131 (251)
T cd01310 110 FRAQLELAKELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHHHhCCCeEEEeeCc
Confidence 3445566666788999999765
No 342
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=20.32 E-value=1.4e+02 Score=23.36 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy18175 45 SKFNHSHCTFTEEARSQDTGVLVHCLAGV 73 (132)
Q Consensus 45 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~ 73 (132)
...+..|++||.....+|++||+-++.-.
T Consensus 42 ~~~L~~A~~~i~~~~~~gg~iLfVgTk~~ 70 (326)
T PRK12311 42 VPLLHRALQAVSDTVAKGGRVLFVGTKRQ 70 (326)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 67899999999999999999998876643
No 343
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=20.12 E-value=4.2e+02 Score=20.50 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCc---------hHHHHHHHHHHHhc--------CCCHHHHHHHHHhhCCC
Q psy18175 49 HSHCTFTEEARSQDTGVLVHCLAGVS---------RSVTITVAYLMSAL--------RLSLNDAFTLVRARKSN 105 (132)
Q Consensus 49 ~~~~~fi~~~~~~~~~VlVHC~~G~~---------RS~~~~~ayLm~~~--------~~~~~~A~~~v~~~Rp~ 105 (132)
....+.++.+.+.|..|.|||-...+ .+..-.+..|.... .++-.++++.+++.|..
T Consensus 115 ~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~~~~~~~~~i~H~st~~~~~~i~~a~~~ 188 (341)
T TIGR00856 115 DAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGNNR 188 (341)
T ss_pred HHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHHHccCCeEEEEecCcHHHHHHHHHcCCC
Confidence 34566667778888999999998622 11111233333322 36788999999888763
No 344
>COG4347 Predicted membrane protein [Function unknown]
Probab=20.09 E-value=1.5e+02 Score=21.23 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCCCC
Q psy18175 79 ITVAYLMSALRLSLNDAFTLVRARKSNI 106 (132)
Q Consensus 79 ~~~ayLm~~~~~~~~~A~~~v~~~Rp~~ 106 (132)
..+||++++ ++++-||+.++.-.+-+.
T Consensus 63 sLvafl~~k-~~~lleAlAfvtl~KyGl 89 (200)
T COG4347 63 SLVAFLLKK-NASLLEALAFVTLVKYGL 89 (200)
T ss_pred HHHHHHHHc-cchHHHHHHHHHHHHHhH
Confidence 456777776 889999999887765443
No 345
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=20.08 E-value=2.8e+02 Score=23.55 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhcCC
Q psy18175 48 NHSHCTFTEEA-RSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 90 (132)
Q Consensus 48 ~~~~~~fi~~~-~~~~~~VlVHC~~G~~RS~~~~~ayLm~~~~~ 90 (132)
.++..+.+.+. +..+.+|+|.|..|..+++ -++|+++..|.
T Consensus 66 ~~~l~~~l~~lGI~~d~~VVvYd~~g~~~A~--R~~w~L~~~G~ 107 (610)
T PRK09629 66 TADLEQLFGELGHNPDAVYVVYDDEGGGWAG--RFIWLLDVIGH 107 (610)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCchHH--HHHHHHHHcCC
Confidence 33444444443 2346789999999876654 34566666553
Done!