RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18175
(132 letters)
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 105 bits (264), Expect = 3e-30
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 54 FTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFM 113
F ++AR + VLVHCLAGVSRS T+ +AYLM L LSL +A+ V++R+ I+PN FM
Sbjct: 73 FIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFM 132
Query: 114 EQLNSFE 120
QL +E
Sbjct: 133 RQLKEYE 139
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 95.4 bits (238), Expect = 2e-26
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 54 FTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFM 113
F E+A S+ VLVHC AGVSRS T+ +AYLM +SLNDA+ V+ R+ I+PNF F+
Sbjct: 70 FIEDAESKGGKVLVHCQAGVSRSATLIIAYLMKTRNMSLNDAYDFVKDRRPIISPNFGFL 129
Query: 114 EQLNSFEK 121
QL +E+
Sbjct: 130 RQLIEYER 137
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 89.7 bits (223), Expect = 4e-24
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 54 FTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFM 113
F ++A + VLVHC AG+SRS T+ +AYLM LSLN+A++ V+ R+ I+PNF F
Sbjct: 63 FIDDAIQKGGKVLVHCQAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPIISPNFGFK 122
Query: 114 EQLNSFEK 121
QL +E+
Sbjct: 123 RQLLEYER 130
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 57.5 bits (139), Expect = 3e-11
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 54 FTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAF-TLVRARKS--NIAPNF 110
F EEA S+ V+VHC G+ RS T+ AYLM LSL D + R R+ +
Sbjct: 97 FIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPGAVVTEIQ 156
Query: 111 HFMEQ 115
H E
Sbjct: 157 HLFEL 161
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 38.4 bits (90), Expect = 4e-04
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 42 PKGSKFNHSHCTFTEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALR-LSLNDAFTLVR 100
P ++ N + + + V+VHC G RSV + AYL+ L++ + ++
Sbjct: 156 PTLAQLNQA-INWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIK 214
Query: 101 ARKSNIAPNFHFMEQLNSFEK 121
+ N QL + EK
Sbjct: 215 QIRKTARLNKR---QLRALEK 232
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 34.3 bits (79), Expect = 0.004
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 57 EARSQDTGVLVHCLAGVSRSVTITVAYLM 85
V+VHC AGV R+ T ++
Sbjct: 34 NQSESSGPVVVHCSAGVGRTGTFVAIDIL 62
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 34.3 bits (79), Expect = 0.004
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 57 EARSQDTGVLVHCLAGVSRSVTITVAYLM 85
V+VHC AGV R+ T ++
Sbjct: 34 NQSESSGPVVVHCSAGVGRTGTFVAIDIL 62
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 33.7 bits (78), Expect = 0.012
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 65 VLVHCLAGVSRSVT-ITVAYLMSALR 89
++VHC AGV R+ T I + L+ L
Sbjct: 169 IVVHCSAGVGRTGTFIAIDILLQRLE 194
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 31.5 bits (72), Expect = 0.082
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 55 TEEARSQDTGVLVHCLAGVSRSVT-ITVAYLMSALR 89
+A + ++VHC AGV R+ T I + L+ L
Sbjct: 161 KSQADPRSGPIVVHCSAGVGRTGTFIAIDILLQQLE 196
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 31.7 bits (72), Expect = 0.085
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 49 HSHCTFTEEARSQDTGVLVHCLAGVSRSVT-ITVAYLMSALRLSLN 93
H R+ ++VHC AGV R+ T I + L+ +LN
Sbjct: 207 VIHSLNDSPVRTGP--IIVHCSAGVGRTGTFIALDILLRMPNDTLN 250
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 30.7 bits (70), Expect = 0.14
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 56 EEARSQDTG-VLVHCLAGVSRSVT-ITVAYLMSALR 89
+++S TG ++VHC AGV R+ T I + L+ L
Sbjct: 187 RKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLE 222
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 30.6 bits (69), Expect = 0.17
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 61 QDTGVLVHCLAGVSRSVTITV-AYLMSALRLSLNDAFTLVRARKSNIAPNFHFME 114
+ +L+HC AG+SRS + A L A + + +RA PN +
Sbjct: 92 RFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 28.1 bits (63), Expect = 0.93
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 56 EEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSN 105
+ + + VHC+AG+ R+ + L+ + DA VR ++
Sbjct: 92 AKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKG 141
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional.
Length = 765
Score = 28.5 bits (64), Expect = 1.0
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 71 AGVSR-SVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKE 122
AGV+ SVT ++ ++ ++ D ++ A+ +N+ + ++ LN +E+
Sbjct: 433 AGVADQSVT-----VLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEA 480
>gnl|CDD|215237 PLN02433, PLN02433, uroporphyrinogen decarboxylase.
Length = 345
Score = 28.4 bits (64), Expect = 1.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 2 APIAIRTYLSGLPDSVCVLIKYQADLFSHTCQVF 35
AP + L L D+V + YQ D + Q+F
Sbjct: 166 APEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIF 199
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and
related proteins; solute-binding domain. Human SGLT5 is
a glucose transporter, which also transports galactose.
It is encoded by the SLC5A10 gene, and is exclusively
expressed in the renal cortex. This subgroup belongs to
the solute carrier 5 (SLC5) transporter family.
Length = 604
Score = 26.4 bits (58), Expect = 5.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 6 IRTYLSGLPDSVCVLIKYQADLFSHTCQVFLIVC-GW 41
IR YLS L + V K DL+S +F+ VC GW
Sbjct: 117 IRMYLSVLSLLLSVFTKISTDLYSGA--LFVQVCLGW 151
>gnl|CDD|165262 PHA02953, PHA02953, IEV and EEV membrane glycoprotein;
Provisional.
Length = 170
Score = 25.9 bits (57), Expect = 6.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 2 APIAIRTYLSGLPDSVCVLIKYQADLFSHTC 32
P AI LS + + ++KY+ +LF C
Sbjct: 17 TPAAIFMILSTIVSGIGTVLKYKDELFPSAC 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.134 0.402
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,426,740
Number of extensions: 534182
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 22
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)