RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18177
(220 letters)
>gnl|CDD|132999 cd00899, b4GalT, Beta-4-Galactosyltransferase is involved in the
formation of the poly-N-acetyllactosamine core
structures present in glycoproteins and
glycosphingolipids. Beta-4-Galactosyltransferase
transfers galactose from uridine diphosphogalactose to
the terminal beta-N-acetylglucosamine residues, hereby
forming the poly-N-acetyllactosamine core structures
present in glycoproteins and glycosphingolipids. At
least seven homologous beta-4-galactosyltransferase
isoforms have been identified that use different types
of glycoproteins and glycolipids as substrates. Of the
seven identified members of the
beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1
to -T7), b1,4-Gal-T1 is most characterized
(biochemically). It is a Golgi-resident type II membrane
enzyme with a cytoplasmic domain, membrane spanning
region, and a stem region and catalytic domain facing
the lumen.
Length = 219
Score = 208 bits (533), Expect = 2e-68
Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 3/159 (1%)
Query: 64 HELCLIIPFRDRFDELLIFLMHMKVFLERQNIVYNVYVVNQVDSYRFNRGSLINVGFLYI 123
H++ +I+PFR+RF+ LLIFL H+ FL+RQ + Y ++V+ QV ++RFNR L+NVGFL
Sbjct: 2 HKVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVGNFRFNRAKLLNVGFLEA 61
Query: 124 QENTHCDFIAMHDVDLIPINPRLNYSYPGDAIMHIAAP--DLHPKYHYKTFLGGILMMKN 181
++ D HDVDL+P N R Y + H++ P H K YKT+ GG+L +
Sbjct: 62 LKDGDWDCFIFHDVDLLPENDRNLYGCE-EGPRHLSVPLDKFHYKLPYKTYFGGVLALTR 120
Query: 182 EHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRIERPEN 220
E F+ VNG SN YWGWG EDD+LY RIK A ++I RP
Sbjct: 121 EQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSG 159
>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of
galactosyltransferase. This is the N-terminal domain of
a family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 78
Score = 91.9 bits (229), Expect = 2e-24
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 156 MHIAAPDLHPKYHYKTFLGGILMMKNEHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRI 215
+ +A + K YK + GG+L E F VNG SN +WGWG EDD+LY R+ A ++I
Sbjct: 3 LSVALDKFNYKLPYKGYFGGVLAFSKEDFLKVNGFSNNFWGWGGEDDDLYARLLLAGLKI 62
Query: 216 ERP 218
ERP
Sbjct: 63 ERP 65
>gnl|CDD|222351 pfam13733, Glyco_transf_7N, N-terminal region of glycosyl
transferase group 7. This is the N-terminal half of a
family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 136
Score = 79.1 bits (195), Expect = 7e-19
Identities = 31/88 (35%), Positives = 47/88 (53%)
Query: 64 HELCLIIPFRDRFDELLIFLMHMKVFLERQNIVYNVYVVNQVDSYRFNRGSLINVGFLYI 123
+IIP+R R + L + L + FL+RQ + Y ++V+ Q + FNR L+NVG L
Sbjct: 47 SRTAIIIPYRAREEHLRLLLYRLHPFLQRQQLAYGIFVIEQAGNGPFNRAKLLNVGVLEA 106
Query: 124 QENTHCDFIAMHDVDLIPINPRLNYSYP 151
+ D +HDVDL+P N Y+
Sbjct: 107 LRDEPWDCFILHDVDLLPENDENLYTCD 134
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 30.5 bits (69), Expect = 0.68
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 172 FLGGILMMKNEHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRIERP 218
+++ + F + G + G G ED EL R+ + P
Sbjct: 165 LASSCILINRDFFLKIGGFDENFRGHGGEDFELLYRLLLYYKKFPPP 211
>gnl|CDD|221309 pfam11912, DUF3430, Protein of unknown function (DUF3430). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 209 to 265 amino acids in
length.
Length = 204
Score = 28.2 bits (63), Expect = 2.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 20 KILSILILLCLIITLLII--LLINV---QGCDCNSVGGS 53
K+L LILL L+I +I IN Q DC+ G S
Sbjct: 2 KLLFSLILLILLILNFVISQQYINFIPYQDGDCSGEGSS 40
>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin
polymerase functions as a GalNAc transferase.
Chondroitin polymerase is a two domain, bi-functional
protein. The N-terminal domain functions as a GalNAc
transferase. The bacterial chondroitin polymerase
catalyzes elongation of the chondroitin chain by
alternatively transferring the GlcUA and GalNAc moiety
from UDP-GlcUA and UDP-GalNAc to the non-reducing ends
of the chondroitin chain. The enzyme consists of
N-terminal and C-terminal domains in which the two
active sites catalyze the addition of GalNAc and GlcUA,
respectively. Chondroitin chains range from 40 to over
100 repeating units of the disaccharide. Sulfated
chondroitins are involved in the regulation of various
biological functions such as central nervous system
development, wound repair, infection, growth factor
signaling, and morphogenesis, in addition to its
conventional structural roles. In Caenorhabditis
elegans, chondroitin is an essential factor for the worm
to undergo cytokinesis and cell division. Chondroitin is
synthesized as proteoglycans, sulfated and secreted to
the cell surface or extracellular matrix.
Length = 182
Score = 27.5 bits (62), Expect = 4.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 163 LHPKYHYKTFLGGILMMKNEHFQTVNGLSNKYWGWGLEDDELYVR 207
L+ K + G + + VNG ++ GWG ED EL R
Sbjct: 117 LNEKLTERGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVAR 161
>gnl|CDD|216107 pfam00768, Peptidase_S11, D-alanyl-D-alanine carboxypeptidase.
Length = 241
Score = 26.9 bits (60), Expect = 7.4
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 177 LMMKNEHFQTVNGLSNK 193
L +KN F GL N
Sbjct: 133 LGLKNTRFVNPTGLDNH 149
>gnl|CDD|224600 COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope
biogenesis, outer membrane].
Length = 389
Score = 27.0 bits (60), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 179 MKNEHFQTVNGLSNK 193
MKN HF +GL N
Sbjct: 158 MKNTHFVNPSGLDNP 172
>gnl|CDD|131269 TIGR02214, spoVD_pbp, stage V sporulation protein D. This model
describes the spoVD subfamily of homologs of the cell
division protein FtsI, a penicillin binding protein.
This subfamily is restricted to Bacillus subtilis and
related Gram-positive species with known or suspected
endospore formation capability. In these species, the
functional equivalent of FtsI is desginated PBP-2B, a
paralog of spoVD [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Cellular processes, Sporulation and germination].
Length = 636
Score = 27.1 bits (60), Expect = 9.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 20 KILSILILLCLIITLLIILLINVQ 43
+ + ILI + +LI+ L VQ
Sbjct: 1 RSIHILISFTALFLILILRLFYVQ 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.145 0.452
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,520,567
Number of extensions: 1107131
Number of successful extensions: 2047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2026
Number of HSP's successfully gapped: 55
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)