RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18177
(220 letters)
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 139 bits (350), Expect = 2e-40
Identities = 89/160 (55%), Positives = 124/160 (77%), Gaps = 3/160 (1%)
Query: 62 DQHELCLIIPFRDRFDELLIFLMHMKVFLERQNIVYNVYVVNQVDSYRFNRGSLINVGFL 121
H++ L++PFRDRF+ELL F+ HM FL+RQ + ++++V+NQVD +RFNR SLINVGF
Sbjct: 49 SVHKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAHHIFVLNQVDRFRFNRASLINVGFQ 108
Query: 122 YIQENTHCDFIAMHDVDLIPINPRLNYSYPGD-AIMHIAAPDLHPKYHYKTFLGGILMMK 180
+ + D+IAMHDVDL+P+N L Y YP +HIA P LHPKYHY F+GGIL+++
Sbjct: 109 FASDV--YDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLVR 166
Query: 181 NEHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRIERPEN 220
EHF+ +NG+SN+YWGWGLEDDE +VRI++A +++ RP+N
Sbjct: 167 REHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQN 206
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 136 bits (344), Expect = 9e-40
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 63 QHELCLIIPFRDRFDELLIFLMHMKVFLERQNIVYNVYVVNQVDSYRFNRGSLINVGFLY 122
H++ +IIPFR+R + L +L ++ L+RQ + Y +YV+NQ FNR L+NVGF
Sbjct: 64 PHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQE 123
Query: 123 IQENTHCDFIAMHDVDLIPINPRLNYSYPGDAI-MHIAAPDLHPKYHYKTFLGGILMMKN 181
++ DVDLIP+N Y + +A Y + GG+ +
Sbjct: 124 ALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSK 183
Query: 182 EHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRIERPEN 220
+ F T+NG N YWGWG EDD+++ R+ + I RP
Sbjct: 184 QQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNA 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 6e-04
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 55/168 (32%)
Query: 72 FRDRFDELLIFLMHMKV---FLER--QNIVYNV--YVVNQVDSY----RFNRGSLINVGF 120
+R FD L +F + L +++ + VVN++ Y + + S I++
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 121 LYIQENTHCD-FIAMH-------------DVDLIPINPRLNYSYPGDAIMHIAAPDLHPK 166
+Y++ + A+H D D + Y Y HI
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-----SHIG------- 478
Query: 167 YHYKTFLGGILMMKNEHFQTVNGLSNKYWGWGLEDDELYVRIKEARIR 214
+H + EH + + + L R E +IR
Sbjct: 479 HH---------LKNIEHPERMTLFRMVF---------LDFRFLEQKIR 508
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 8e-04
Identities = 37/177 (20%), Positives = 49/177 (27%), Gaps = 81/177 (45%)
Query: 12 TNKLLRSNKILSILILLCLIITLLIILLINVQGCDCNSVGG---SLLS-QSTLH------ 61
TN L + K + I L+N G V G SL TL
Sbjct: 356 TNSHLPAGKQVEIS-------------LVN--GAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 62 --DQHELCLIIPFRDRFDELLIFLMHMKVFLERQNIVYNVYVVNQVDSYRFNRGSL-INV 118
DQ IPF +R K+ S RF L +
Sbjct: 401 GLDQSR----IPFSER-----------KL----------------KFSNRF----LPVAS 425
Query: 119 GFLYIQENTHCDFIAMHDVDLIPINPRLNYSYPGDAIMHIAAPDLH-PKYHYKTFLG 174
F H L+P + +N + + A D+ P Y TF G
Sbjct: 426 PF-------HSHL-------LVPASDLINKDLVKNNV-SFNAKDIQIPVYD--TFDG 465
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 35.7 bits (82), Expect = 0.008
Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 10/137 (7%)
Query: 85 HMKVFLERQNIVYNVYVVNQVDSYRFNRGSLINVGFLY--IQENTHCDFIAMHDVDLIPI 142
+M++ N+ + +D+ + ++ L I E + +A +
Sbjct: 195 YMELLAVDDNVAL-IGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSV 253
Query: 143 NPRLNYSYPGDAIMHIAAPDLHPKYHYKTFLGGILMMKNEHFQTVNGLSNKYWGWGLEDD 202
+ R+ + D + ++ F GG + + ++ WG ED+
Sbjct: 254 DWRIEHFKNTDNL-------RLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDN 306
Query: 203 ELYVRIKEARIRIERPE 219
E R+ E
Sbjct: 307 EFGYRLYREGCYFRSVE 323
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 29.7 bits (66), Expect = 0.64
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 112 RGSLINVGFLYIQENTHCDFIAMHDVDLIPINPRL 146
+G +N Y E T + I +D D+ P
Sbjct: 76 KGDGMNTALRYFLEETQWERIHFYDADITSFGPDW 110
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 27.8 bits (61), Expect = 3.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 171 TFLGGILMMKNEHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRIE 216
T GG+ + ++FQ + WG E+ E+ RI + +E
Sbjct: 203 TMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLE 248
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 27.8 bits (61), Expect = 3.4
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 167 YHYKTFLGGILMMKNEHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRIE 216
GG+ +M +F+ + WG E+ E+ R+ + +E
Sbjct: 231 IKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLE 280
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.145 0.452
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,451,669
Number of extensions: 197263
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 12
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.3 bits)