RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18177
         (220 letters)



>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score =  148 bits (374), Expect = 1e-44
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 1/159 (0%)

Query: 63  QHELCLIIPFRDRFDELLIFLMHMKVFLERQNIVYNVYVVNQVDSYRFNRGSLINVGFLY 122
            H++ +IIPFR+R + L  +L ++   L+RQ + Y +YV+NQ     FNR  L+NVGF  
Sbjct: 48  PHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGESMFNRAKLLNVGFKE 107

Query: 123 IQENTHCDFIAMHDVDLIPINPRLNYSYPGDAI-MHIAAPDLHPKYHYKTFLGGILMMKN 181
             ++   +     DVDLIP+N    Y        + +A         Y  + GG+  +  
Sbjct: 108 ALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSK 167

Query: 182 EHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRIERPEN 220
           + F ++NG  N YWG G EDD++Y R+    + + RP  
Sbjct: 168 QQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNA 206


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 34.5 bits (78), Expect = 0.007
 Identities = 20/119 (16%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 100 YVVNQVDSYRFNRGSLINVGFLYIQENTHCDFIAMHDVDLIPINPRLNYSYPGDAIMHIA 159
           ++   +   + +R +++      I ++T  +++A  D+     N +LN+ +       + 
Sbjct: 124 WLEPLLARIKHDRRTVVCPIIDVISDDTF-EYMAGSDMTYGGFNWKLNFRWYPVPQREMD 182

Query: 160 APDLHPKYHYKTFL--GGILMMKNEHFQTVNGLSNKYWGWGLEDDELYVRIKEARIRIE 216
                     +T    GG+  +  ++FQ +         WG E+ E+  RI +    +E
Sbjct: 183 RRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLE 241


>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 70

 Score = 24.4 bits (53), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 48 NSVGGSLLSQSTLHDQHELC 67
          N + G LL +  L D  +LC
Sbjct: 31 NDIVGDLLPELCLQDCQDLC 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.145    0.452 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 863,333
Number of extensions: 39017
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 9
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.2 bits)