BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18179
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C IL++P+ LPCNH +C C Q + ++L CP CR+R+S W R + + L++
Sbjct: 18 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 77
Query: 79 LWNQIQKYYKKEVDQKLFDQDD 100
LW IQK+Y +E + Q+
Sbjct: 78 LWTIIQKHYPRECKLRASGQES 99
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 16 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
S +C+ CQ ++ +P+ C H+VC +CLQR SCP CR L
Sbjct: 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3
Ubiquitin- Protein Ligase Uhrf1
Length = 124
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
++ C+ CQ ++ +PI C H+VC +CL R SCP CR L
Sbjct: 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRL 61
+ V+C +C IL KP+ + C H+ CL+C+ +I + S CP+C+ +
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMC 57
+ V+C +C IL KP+ + C H+ CL+C+ +I + S CP+C
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNK 69
N + + + C++C I+ + L C H C C+ + CP+CRK + ++K
Sbjct: 58 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDI-----KSK 111
Query: 70 DFSLLID 76
+SL++D
Sbjct: 112 TYSLVLD 118
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNK 69
N + + + C++C I+ + L C H C C+ + CP+CRK + ++K
Sbjct: 47 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDI-----KSK 100
Query: 70 DFSLLIDENLWNQIQKYYKKEVDQK 94
+SL++D N N++ EV ++
Sbjct: 101 TYSLVLD-NXINKMVNNLSSEVKER 124
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNK 69
N + + + C++C I+ + L C H C C+ + CP+CRK + ++K
Sbjct: 47 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDI-----KSK 100
Query: 70 DFSLLID 76
+SL++D
Sbjct: 101 TYSLVLD 107
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECL-----QRICDNSNLSCPMCR 58
+ V C +C +L +P+ L C H C CL + + D SCP+CR
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 7 NSNNTLTPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQ-RICDNSNLSCPMCRK 59
S + PD +LCL+C+ I+ + +P C + C EC++ + ++ +CP C +
Sbjct: 4 GSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 14 PDSVLCLVCQGILIKPIKLP-CNHHVCLECLQ-RICDNSNLSCPMCRK 59
PD +LCL+C+ I+ + +P C + C EC++ + ++ +CP C +
Sbjct: 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 16 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCR 58
S+ C +C+ IL P++ C H C C+ R CP CR
Sbjct: 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
+++LC+VC I PC H VC E C SCP+CR R+
Sbjct: 17 EAMLCMVCCEEEINSTFCPCGHTVCCE----SCAAQLQSCPVCRSRV 59
>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
Domains Of Traf2
Length = 141
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMC 57
LC C+ +L +P + C H C CL I + +C C
Sbjct: 33 LCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAAC 72
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 34 CNHHVCLECLQRICDNSNLSCPMCRKRL--SIWLRRNKDFSLLIDE 77
C H C +C+ + N CP CRK+L LR + +F LI +
Sbjct: 72 CLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISK 117
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 34 CNHHVCLECLQRICDNSNLSCPMCRKRL--SIWLRRNKDFSLLIDE 77
C H C +C+ + N CP CRK+L LR + +F LI +
Sbjct: 73 CLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISK 118
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 34 CNHHVCLECLQRICDNSNLSCPMCRKRL--SIWLRRNKDFSLLIDE 77
C H C +C+ + N CP CRK+L LR + +F LI +
Sbjct: 53 CLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISK 98
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 53 SCPMCRKRLSIWLRRNK---DFSLLIDE 77
+C M RKR+ +W ++N D SLL DE
Sbjct: 255 ACEMARKRILLWHKKNAVAGDASLLADE 282
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECL------QRICDNSNLSCPMCRKRLSI-WLRR 67
+ V C +C +L +P+ L C H +C C+ SCP+C S L+
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70
Query: 68 NKDFSLLID 76
N+ + +++
Sbjct: 71 NQHLANIVE 79
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 27 IKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRK 59
++P L C H +C +CL+++ +S + CP C K
Sbjct: 30 LRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 33 PCNHHVCLECLQRICDNSNLSCPMCR 58
PC H +C CL ++ CP CR
Sbjct: 351 PCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 33 PCNHHVCLECLQRICDNSNLSCPMCR 58
PC H +C CL ++ CP CR
Sbjct: 349 PCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 33 PCNHHVCLECLQRICDNSNLSCPMCR 58
PC H +C CL ++ CP CR
Sbjct: 349 PCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 33 PCNHHVCLECLQRICDNSNLSCPMCR 58
PC H +C CL ++ CP CR
Sbjct: 351 PCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 33 PCNHHVCLECLQRICDNSNLSCPMCR 58
PC H +C CL ++ CP CR
Sbjct: 355 PCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKRLSI-WLRRNKDFSLLI 75
C +C ++ +P+ C+H C C+ ++ + CP+C+ ++ L+ + FS L+
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLV 83
Query: 76 DENL 79
+E L
Sbjct: 84 EELL 87
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
D C C +L P + C H C C+ + +S+ C C++ +
Sbjct: 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQ------RICDNSNLSCPMCR 58
+ V C +C +L +P+ CNH C C+ R D +CP+CR
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKG-NCPVCR 66
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 53 SCPMCRKRLSIWLRRNK---DFSLLIDE 77
+C M RKR+ +W ++N D SLL DE
Sbjct: 243 ACEMARKRILLWHKKNAVAGDASLLADE 270
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 30 IKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
+ C H C +CL+ N+N +CP CRK++
Sbjct: 31 VSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 61
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 59
C+VCQ + + LPC H CL C CPMCR+
Sbjct: 18 CVVCQNGTVNWVLLPCRH----TCLCDGCVKYFQQCPMCRQ 54
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPM 56
C +C L + ++ PC H C C+ + ++ CP+
Sbjct: 28 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 33 PCNHHVCLECLQRICDNSNLSCPMCR 58
PC H +C CL ++ CP CR
Sbjct: 41 PCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDN--SNLSCPMC 57
C VC L +P+ + C H+ C C+ R ++ + CP+C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 30 IKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
+ C H C +CL+ N+N +CP CRK++
Sbjct: 36 VSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 66
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 30 IKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
+ C H C +CL+ N+N +CP CRK++
Sbjct: 28 VSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 58
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 30 IKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
+ C H C +CL+ N+N +CP CRK++
Sbjct: 93 VSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 123
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 33 PCNHHVCLECLQRICDNSNLSCPMCR 58
PC H +C CL ++ CP CR
Sbjct: 44 PCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 30 IKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
+ C H C +CL+ N+N +CP CRK++
Sbjct: 24 VSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 54
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-NLSCPMCRKRLSIWLRRNKDFS 72
PD VL C ++K + L C +++C+ + S L CP R I L ++
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 73 LL-IDEN 78
+L +DEN
Sbjct: 266 ILWVDEN 272
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-NLSCPMCRKRLSIWLRRNKDFS 72
PD VL C ++K + L C +++C+ + S L CP R I L ++
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 73 LL-IDEN 78
+L +DEN
Sbjct: 266 ILWVDEN 272
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 64 WLRRNKDFSLLIDENLWNQIQKYYKKE 90
W RR D+ L ++ LW + +Y ++E
Sbjct: 113 WFRRFDDYQALKNQALWKPLPEYTREE 139
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-NLSCPMCRKRLSIWLRRNKDFS 72
PD VL C ++K + L C +++C+ + S L CP R I L ++
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 73 LL-IDEN 78
+L +DEN
Sbjct: 266 ILWVDEN 272
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 7 NSNNTLTPDSVL-CLVCQGILIKPIKLPCNHHVCLECLQ 44
+S NT +V C +C + P+ LPC H C C++
Sbjct: 5 SSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVK 43
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 33 PCNHHVCLECLQRICDNSNLSCPMCR 58
PC H +C CL ++ CP CR
Sbjct: 43 PCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 59
C CQ P LPC H +C CL + S + CP+C+
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCL----EASGMQCPICQA 45
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPM 56
C +C L + ++ PC H C C+ + ++ CP+
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPM 56
C +C L + ++ PC H C C+ + ++ CP+
Sbjct: 9 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 65 LRRNKDFSLLIDENLWNQIQKYYKKEVD 92
LRRN + I + L++Q++++Y+ E D
Sbjct: 612 LRRNSQLASSIMQTLFSQLKQFYEPEPD 639
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPM 56
C +C L + ++ PC H C C+ + ++ CP+
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 15 DSVLCLVCQGIL----IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 59
D V C +C L I C + +C C RI + N CP CRK
Sbjct: 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of
Swi/snf Chromatin Remodeler
Length = 477
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 62 SIWLRRNKDFSLLIDENLWNQIQKYYKKEVD 92
S W+++ K L + E ++++YYK++ D
Sbjct: 225 STWIQQFKSTXLQVSEKDLFELERYYKEQAD 255
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 32 LPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
LPC H C +C+ + D + +CP+CR +++
Sbjct: 30 LPCAHSFCQKCIDKWSDR-HRNCPICRLQMT 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,672,398
Number of Sequences: 62578
Number of extensions: 128809
Number of successful extensions: 428
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 72
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)