BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18179
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168
PE=2 SV=1
Length = 557
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 77
+C +CQ IL++P+ LPC H +C C Q + ++L CP CRKR+S W R + L++
Sbjct: 15 ICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARLHSRTRTLVNT 74
Query: 78 NLWNQIQKYYKKEVDQKLFDQD 99
LW +IQK Y KE ++ Q+
Sbjct: 75 ELWERIQKQYPKECQRRASGQE 96
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis
GN=rnf168 PE=2 SV=1
Length = 535
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 77
+C +CQ IL++P+ LPC H +C C Q + ++L CP CRKR+S W R++ L+++
Sbjct: 15 ICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARQHSRTRTLVNK 74
Query: 78 NLWNQIQKYYKKEVDQKLFDQD 99
LW IQK Y K+ ++ Q+
Sbjct: 75 ELWEVIQKQYPKQCQRRASGQE 96
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C IL++P+ LPCNH +C C Q + +NL CP CR+R+S W R + + L++ +
Sbjct: 16 CGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75
Query: 79 LWNQIQKYYKKEVDQKLFDQD 99
LW IQK+Y KE ++ Q+
Sbjct: 76 LWEIIQKHYAKECKLRISGQE 96
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C IL++P+ LPCNH +C C Q + +NL CP CR+R+S W R + + L++ +
Sbjct: 16 CGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75
Query: 79 LWNQIQKYYKKEVDQKLFDQD 99
LW IQK+Y KE ++ Q+
Sbjct: 76 LWEIIQKHYAKECKLRISGQE 96
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 8 SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 67
S+ L +C VC I ++P+ LPC H C C D SN+ CP+CRKR+S W R
Sbjct: 15 SSGGLKRSDCVCPVCLEIFLEPVTLPCMHTFCKPCFLETVDKSNMCCPLCRKRVSTWARL 74
Query: 68 NKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDD 100
N L++ LW +IQ + + ++++ DD
Sbjct: 75 NSRNKTLVNMELWRRIQDAFPSQCERRVQGIDD 107
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C IL++P+ LPCNH +C C Q + ++L CP CR+R+S W R + + L++
Sbjct: 16 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 75
Query: 79 LWNQIQKYYKKE 90
LW IQK+Y +E
Sbjct: 76 LWTIIQKHYPRE 87
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C IL +P+ LPCNH +C C + + ++L CP CR+R+S W R + L++
Sbjct: 16 CQICVEILFEPVTLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTNSLVNME 75
Query: 79 LWNQIQKYYKKE 90
LW IQK+Y KE
Sbjct: 76 LWEIIQKHYPKE 87
>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3
SV=1
Length = 630
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDF 71
L+ + C VC IL++P+ +PC H VCL C QR +L CP+CR R+S W R+
Sbjct: 29 LSLEEARCPVCSEILLEPVTMPCGHSVCLHCFQRTVKLISLCCPLCRLRVSSWARKQSRE 88
Query: 72 SLLIDENLWNQIQKYYKKEVDQKLFDQDDG 101
L++ LW ++ + + +++ +Q DG
Sbjct: 89 KSLVNAELWELVRLSHPERCKRRM-EQRDG 117
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWL-RRNKDFSLLIDE 77
C +C +L +P+ PC H CL+CL+R D++ CP+C+ +LS L RN + ++L +E
Sbjct: 449 CALCMRLLFEPVTTPCGHTFCLKCLERCLDHAP-HCPLCKDKLSELLASRNFNITVLAEE 507
Query: 78 NLWNQIQKYYKKEVD--QKLFDQD 99
++ +Y E+ ++++D++
Sbjct: 508 LIF----RYLPDELSDRKRIYDEE 527
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQ 44
D + C C+ +L KP+ LPC VC C++
Sbjct: 139 DLLGCPRCRRLLHKPVTLPCGLTVCKRCVE 168
>sp|Q9CWS1|RN135_MOUSE E3 ubiquitin-protein ligase RNF135 OS=Mus musculus GN=Rnf135 PE=2
SV=1
Length = 417
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRI-------CDNSNLSCPMCRK 59
L+ D + C++CQG+L +P LPC H CL CL + D +CP+CRK
Sbjct: 14 LSEDDLSCIICQGLLDQPTTLPCGHSFCLRCLHDLWVSKRGAVDGCPWACPICRK 68
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C + +P+ PC H CL+CL+R C + N CP+C+ LS L K +I E
Sbjct: 426 CALCMRLFYEPVTTPCGHTFCLKCLER-CLDHNAKCPLCKDGLSQCLASRKYSKNVIMEE 484
Query: 79 LWNQIQKYYKKEVDQ--KLFDQD 99
L I K+ +E+ + KL++++
Sbjct: 485 L---IAKFLPEELKERRKLYEEE 504
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
D C C G L P+ L C H C CL+R ++ C +C +LS
Sbjct: 154 DGFKCRKCHGFLSDPVSLSCGHTFCKLCLER-GRAADRRCALCGVKLS 200
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C + +P+ PC H CL+CL+R C + N CP+C+ LS L K +I E
Sbjct: 467 CALCMRLFYEPVTTPCGHTFCLKCLER-CLDHNAKCPLCKDGLSQCLASRKYSKNVIMEE 525
Query: 79 LWNQIQKYYKKEVDQ--KLFDQD 99
L I K+ +E+ + KL++++
Sbjct: 526 L---IAKFLPEELKERRKLYEEE 545
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
D C C G L P+ L C H C CL+R ++ C +C +LS
Sbjct: 154 DGFKCRKCHGFLSDPVSLSCGHTFCKLCLER-GRAADRRCALCGVKLS 200
>sp|Q5M929|RN135_RAT E3 ubiquitin-protein ligase RNF135 OS=Rattus norvegicus GN=Rnf135
PE=2 SV=1
Length = 415
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRI-------CDNSNLSCPMCRK 59
L+ + + C++CQG+L P LPC H CL+CL+ + D+ +CP+CRK
Sbjct: 14 LSEEDLSCIICQGLLDWPTTLPCGHSFCLQCLKDLWVSKRAGVDSCPWACPICRK 68
>sp|E7EZF3|UHRF1_DANRE E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1
Length = 776
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
LC+ CQ ++ +PI C H+VC ECLQR +CP CR L
Sbjct: 705 LCICCQEVVYQPITTECQHNVCRECLQRSFKAKVYTCPACRHDL 748
>sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=Mus musculus GN=Trim10
PE=2 SV=2
Length = 489
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD------NSNLSCPMCRK 59
T D V C +CQG L +P+ + C H+ C CL R C+ +LSCP+C++
Sbjct: 8 TSLADEVNCPICQGTLREPVTIDCGHNFCRGCLTRYCEIPGPESEESLSCPLCKE 62
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC---DNSNLSCPMCRK 59
L D + C++CQG+L P LPC H C CL+ + D +CP CR+
Sbjct: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQ 64
>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3
SV=1
Length = 732
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63
L+ D + C +C L P LPC H C +CL ++ + S L CP CR+ + +
Sbjct: 14 LSSDFLACKICLEQLRVPKTLPCLHTYCQDCLAQLAEGSRLRCPECRESVPV 65
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKRLSIWLRRNK-DF 71
+ V+C +C IL KP+ + C H+ CL+C+ +I + S CP+C+ +R+N F
Sbjct: 12 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS----VRKNAIRF 67
Query: 72 SLLIDENLWNQIQKYYKKEVDQK 94
+ L+ NL +IQ EV K
Sbjct: 68 NSLL-RNLVEKIQALQASEVQSK 89
>sp|Q9BRZ2|TRI56_HUMAN E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1
SV=3
Length = 755
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63
L+ D + C +C L P LPC H C +CL ++ D + CP CR+ + +
Sbjct: 14 LSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPV 65
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C + +P+ PC H C CL+R D++ CP+C++ L +L D + +
Sbjct: 479 CSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPY-CPLCKESLKEYL---ADRRYCVTQL 534
Query: 79 LWNQIQKYYKKEVDQ--KLFDQD 99
L I KY E+ + K++D++
Sbjct: 535 LEELIVKYLPDELSERKKIYDEE 557
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
CL C+G L +P+ +PC H C CL+R C +CR RL
Sbjct: 123 CLGCRGFLSEPVTVPCGHSYCRRCLRR---ELRARCRLCRDRL 162
>sp|A7E320|UHRF1_BOVIN E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1
Length = 786
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
C+ CQ ++ +PI C H+VC +CL R SCP CR L
Sbjct: 717 CICCQELVFRPITTVCQHNVCKDCLDRSFKAQVFSCPACRYDL 759
>sp|Q7YR32|TRI10_PANTR Tripartite motif-containing protein 10 OS=Pan troglodytes
GN=TRIM10 PE=3 SV=1
Length = 481
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD------NSNLSCPMCRK 59
T D V C +CQG L +P+ + C H+ C CL R C+ + +CP+C++
Sbjct: 8 TSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKE 62
>sp|F1MRW8|RN169_BOVIN E3 ubiquitin-protein ligase RNF169 OS=Bos taurus GN=RNF169 PE=3
SV=3
Length = 689
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 22 CQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 67
C G L P LPC H +C C QR D + CP CR R + W RR
Sbjct: 49 CAGCLETPGEAAALPCGHSLCRGCAQRAADAAGPCCPRCRARGAGWARR 97
>sp|Q9UDY6|TRI10_HUMAN Tripartite motif-containing protein 10 OS=Homo sapiens GN=TRIM10
PE=2 SV=3
Length = 481
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD------NSNLSCPMCRK 59
T D V C +CQG L +P+ + C H+ C CL R C+ + +CP+C++
Sbjct: 8 TSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKE 62
>sp|O14212|YDT7_SCHPO Uncharacterized RING finger protein C6B12.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC6B12.07c PE=4 SV=2
Length = 470
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 78
C +C + KP++L C+H CL CL + CP+CR + + K S ID
Sbjct: 374 CAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFCPLCRAKEVM-----KADSRNIDHA 428
Query: 79 LWNQIQKYYKKEVDQKLFDQDDGVW 103
L N ++ Y+ +E+ +K + ++ +
Sbjct: 429 LMNFMKTYFPREIKEKFEENENDTF 453
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
C +C + +P+ PC H CL+CL+R C + N CP+C+ L
Sbjct: 461 CSLCMRLFYEPVTTPCGHTFCLKCLER-CLDHNAKCPLCKDVL 502
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
D C C G L P+ L C H C CL+R ++ C +C +LS
Sbjct: 155 DGFKCKKCHGFLSDPVSLWCGHTFCKLCLER-GRAADRRCALCGVKLS 201
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNK 69
T+ + V C +C ++P+ + C H C EC+ ++ CP+CR+R + LR N+
Sbjct: 8 TMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLRPNR 67
Query: 70 DFSLLID 76
+ +++
Sbjct: 68 QLANMVN 74
>sp|Q8NCN4|RN169_HUMAN E3 ubiquitin-protein ligase RNF169 OS=Homo sapiens GN=RNF169 PE=1
SV=2
Length = 708
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 22 CQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 67
C G L P LPC H +C C QR D + CP CR R W RR
Sbjct: 68 CAGCLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWARR 116
>sp|Q7TMI3|UHRF2_MOUSE E3 ubiquitin-protein ligase UHRF2 OS=Mus musculus GN=Uhrf2 PE=1
SV=1
Length = 803
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 16 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLI 75
S +C+ CQ ++ +P+ C H+VC +CLQR SCP CR L +++ +++
Sbjct: 731 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL------GQNYVMVL 784
Query: 76 DENL 79
+E L
Sbjct: 785 NETL 788
>sp|Q96T88|UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1
SV=1
Length = 793
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
C+ CQ ++ +PI C H+VC +CL R SCP CR L
Sbjct: 724 CICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 766
>sp|Q8VDF2|UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1
SV=2
Length = 782
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
C+ CQ ++ +P+ C H+VC +CL R SCP CR L
Sbjct: 713 CICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPACRFEL 755
>sp|Q96PU4|UHRF2_HUMAN E3 ubiquitin-protein ligase UHRF2 OS=Homo sapiens GN=UHRF2 PE=1
SV=1
Length = 802
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 16 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
S +C+ CQ ++ +P+ C H+VC +CLQR SCP CR L
Sbjct: 730 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 776
>sp|Q28GL3|RNFT1_XENTR RING finger and transmembrane domain-containing protein 1
OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1
Length = 416
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKD 70
+C +CQ IKPI L C H C EC+ + N +CP+CR +S + KD
Sbjct: 355 MCAICQAEFIKPIVLVCQHVFCEECIS-LWFNKEKTCPLCRTVISNQSHKWKD 406
>sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65 OS=Homo sapiens GN=TRIM65
PE=2 SV=3
Length = 517
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL--SIWLRRNK 69
L + + C +C G+ P+ LPC H+ C C++ D +CP CR+ LRRN
Sbjct: 5 LLEEKLTCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFPDGAELRRNV 64
Query: 70 DFSLLID 76
S +++
Sbjct: 65 ALSGVLE 71
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNK 69
T+ + V C +C +++P+ + C H C EC+ + CP+CR+ + LR N+
Sbjct: 8 TMMWEEVTCSICLDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHFLLQNLRPNR 67
Query: 70 DFSLLID 76
+ ++D
Sbjct: 68 QVANMVD 74
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL--SIWLRRNK 69
L D V C +C G P+ LPC H C C+Q + SCP CR+ L RN
Sbjct: 6 LEEDVVTCSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPFPEGAKLSRNV 65
Query: 70 DFSLLI 75
S L+
Sbjct: 66 KMSTLL 71
>sp|Q5NCC9|TRI58_MOUSE Tripartite motif-containing protein 58 OS=Mus musculus GN=Trim58
PE=2 SV=1
Length = 485
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSN-----LSCPMCRKRLS-IWLRRNKDFS 72
C VC L +PI + C H CL C+ C+ S+ +CP CR R N+ +
Sbjct: 15 CSVCLDFLQEPISVDCGHSFCLRCISEFCEKSDSAQGVYACPQCRGPFRPASFRPNRQLA 74
Query: 73 LLID 76
L+D
Sbjct: 75 SLVD 78
>sp|Q8N448|LNX2_HUMAN Ligand of Numb protein X 2 OS=Homo sapiens GN=LNX2 PE=1 SV=1
Length = 690
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
D ++C +C L++P+ PC H C +CL+ + CP+ RKRL
Sbjct: 46 DDLVCHICLQPLLQPLDTPCGHTFCYKCLRNFLQEKDF-CPLDRKRL 91
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNKDFSL 73
+ V C +C +++P+ + C H C EC+ + N SCP CR++ + LR N+ +
Sbjct: 16 EEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNLRPNRHIAN 75
Query: 74 LIDENLWNQIQKYYKKEVDQ 93
++ ENL QI + KK +
Sbjct: 76 MV-ENL-KQIAQNTKKSTQE 93
>sp|Q9CQ29|RN151_MOUSE RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1
Length = 239
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 14 PD-SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
PD LC VC G+L +P +LPC+H C +C+ R N +CP CRK ++
Sbjct: 14 PDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQN-TCPCCRKEVT 62
>sp|Q91XL2|LNX2_MOUSE Ligand of Numb protein X 2 OS=Mus musculus GN=Lnx2 PE=1 SV=2
Length = 687
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
D ++C +C L++P+ PC H C +CL+ + CP+ RKRL
Sbjct: 47 DDLVCHICLQPLLQPLDTPCGHTFCHKCLRNFLQEKDF-CPLDRKRL 92
>sp|Q5M7Z0|RNFT1_HUMAN RING finger and transmembrane domain-containing protein 1 OS=Homo
sapiens GN=RNFT1 PE=2 SV=2
Length = 435
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKD 70
+C +CQ KPI L C H C EC+ + N +CP+CR +S + + KD
Sbjct: 374 ICSICQAEFQKPILLICQHIFCEECMT-LWFNREKTCPLCRTVISDHINKWKD 425
>sp|Q62158|TRI27_MOUSE Zinc finger protein RFP OS=Mus musculus GN=Trim27 PE=1 SV=2
Length = 513
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRI--CDNSNLSCPMCRK 59
C VC ++P+ L C H++C CL R +N+SCP CR+
Sbjct: 16 CPVCLQYFVEPMMLDCGHNICCACLARCWGAAETNVSCPQCRE 58
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKD 70
+C +CQ KPI L C H C EC+ N +CP+CR +S + KD
Sbjct: 355 MCAICQAEFTKPIALICQHVFCEECISSWF-NKEKTCPLCRTLISNHSHKWKD 406
>sp|A1L020|MEX3A_HUMAN RNA-binding protein MEX3A OS=Homo sapiens GN=MEX3A PE=1 SV=1
Length = 520
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 19 CLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMC 57
C+VC + +PC H++ C+EC RIC+ ++ CP+C
Sbjct: 469 CMVCFESEVTAALVPCGHNLFCMECAVRICERTDPECPVC 508
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKD 70
+C +CQ KP+ L C H C EC+ + N +CP+CR +S + + KD
Sbjct: 334 ICTICQAEFQKPVLLFCQHIFCEECIT-LWFNREKTCPLCRTVISECINKWKD 385
>sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus GN=Mex3b PE=2 SV=2
Length = 601
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 19 CLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMCRKRLSIWLR 66
C VC + +PC H++ C+EC RIC+ S CP+C ++ +R
Sbjct: 550 CSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIR 598
>sp|Q6ZN04|MEX3B_HUMAN RNA-binding protein MEX3B OS=Homo sapiens GN=MEX3B PE=1 SV=1
Length = 569
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 19 CLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMCRKRLSIWLR 66
C VC + +PC H++ C+EC RIC+ S CP+C ++ +R
Sbjct: 518 CSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIR 566
>sp|Q2TBT8|RN151_BOVIN RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 14 PD-SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61
PD + LC VC G+L +P++LPC+H C +C+ R +CP CRK +
Sbjct: 14 PDCNFLCSVCHGVLKRPVRLPCSHIFCKKCILRWLARQK-TCPCCRKEV 61
>sp|Q5E9G4|TRI10_BOVIN Tripartite motif-containing protein 10 OS=Bos taurus GN=TRIM10
PE=2 SV=1
Length = 489
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN------LSCPMCRK 59
T D V C VCQG L +P+ + C H+ C CL R + ++ +CP+C++
Sbjct: 8 TSLADEVNCPVCQGTLREPVTIDCGHNFCRVCLTRYLEITSPDPEEPPTCPLCKE 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,472,594
Number of Sequences: 539616
Number of extensions: 1623265
Number of successful extensions: 6169
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 364
Number of HSP's that attempted gapping in prelim test: 5727
Number of HSP's gapped (non-prelim): 726
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)