Query psy18179
Match_columns 108
No_of_seqs 208 out of 1301
Neff 9.5
Searched_HMMs 29240
Date Sat Aug 17 00:50:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l11_A E3 ubiquitin-protein li 99.9 6.2E-24 2.1E-28 126.1 2.3 96 8-103 7-102 (115)
2 3ztg_A E3 ubiquitin-protein li 99.8 4.2E-21 1.4E-25 109.7 5.7 78 6-89 3-82 (92)
3 3fl2_A E3 ubiquitin-protein li 99.8 1.6E-21 5.5E-26 117.0 3.3 73 14-92 50-122 (124)
4 1t1h_A Gspef-atpub14, armadill 99.8 3.3E-21 1.1E-25 107.0 4.3 70 12-88 4-73 (78)
5 2kr4_A Ubiquitin conjugation f 99.8 1.6E-20 5.4E-25 106.0 5.9 76 7-90 5-80 (85)
6 1wgm_A Ubiquitin conjugation f 99.8 1.2E-19 4E-24 104.9 5.9 72 10-89 16-88 (98)
7 1z6u_A NP95-like ring finger p 99.8 2.9E-20 1E-24 114.9 3.3 73 14-92 76-148 (150)
8 2kre_A Ubiquitin conjugation f 99.8 9.1E-20 3.1E-24 105.7 5.1 71 10-88 23-93 (100)
9 2ecy_A TNF receptor-associated 99.8 6.9E-19 2.4E-23 94.7 5.3 57 6-62 5-61 (66)
10 2ckl_B Ubiquitin ligase protei 99.8 2.5E-19 8.4E-24 112.2 3.3 72 12-89 50-122 (165)
11 3lrq_A E3 ubiquitin-protein li 99.8 1.5E-19 5.2E-24 104.8 2.0 50 14-63 20-70 (100)
12 4ayc_A E3 ubiquitin-protein li 99.8 4E-19 1.4E-23 108.4 3.7 66 14-85 51-116 (138)
13 2ckl_A Polycomb group ring fin 99.8 6E-19 2.1E-23 103.5 4.3 73 13-89 12-85 (108)
14 2yu4_A E3 SUMO-protein ligase 99.7 5E-19 1.7E-23 101.5 2.6 69 13-88 4-81 (94)
15 2yur_A Retinoblastoma-binding 99.7 1.8E-18 6.3E-23 95.1 4.7 57 6-62 5-63 (74)
16 2egp_A Tripartite motif-contai 99.7 5E-20 1.7E-24 102.3 -2.0 55 9-63 5-65 (79)
17 2csy_A Zinc finger protein 183 99.7 4.1E-18 1.4E-22 95.1 5.5 55 7-62 6-60 (81)
18 2y43_A E3 ubiquitin-protein li 99.7 2E-18 6.8E-23 99.8 3.9 68 14-89 20-88 (99)
19 2djb_A Polycomb group ring fin 99.7 5.8E-18 2E-22 92.5 5.4 59 4-63 3-62 (72)
20 2ysl_A Tripartite motif-contai 99.7 7.4E-18 2.5E-22 92.2 5.5 53 10-62 14-68 (73)
21 2c2l_A CHIP, carboxy terminus 99.7 3.3E-18 1.1E-22 114.2 4.9 71 11-88 203-273 (281)
22 2d8t_A Dactylidin, ring finger 99.7 6.1E-18 2.1E-22 92.2 4.6 57 6-63 5-61 (71)
23 2ysj_A Tripartite motif-contai 99.7 1.2E-17 4.1E-22 89.0 5.6 48 10-57 14-63 (63)
24 2ecw_A Tripartite motif-contai 99.7 6.4E-19 2.2E-23 98.9 0.4 54 10-63 13-71 (85)
25 2ct2_A Tripartite motif protei 99.7 1.1E-17 3.7E-22 94.5 5.3 57 7-63 6-68 (88)
26 2f42_A STIP1 homology and U-bo 99.7 9.5E-18 3.2E-22 105.9 5.1 71 11-88 101-171 (179)
27 3hct_A TNF receptor-associated 99.7 3.9E-18 1.3E-22 101.5 2.9 54 10-63 12-65 (118)
28 1jm7_B BARD1, BRCA1-associated 99.7 6.1E-18 2.1E-22 100.5 3.6 64 14-87 20-84 (117)
29 1jm7_A BRCA1, breast cancer ty 99.7 1.5E-17 5E-22 97.9 4.7 50 14-63 19-70 (112)
30 2ecj_A Tripartite motif-contai 99.7 2.9E-17 9.9E-22 86.0 5.3 51 7-57 6-58 (58)
31 2ecv_A Tripartite motif-contai 99.7 1.1E-18 3.8E-23 97.9 -0.4 54 10-63 13-71 (85)
32 3knv_A TNF receptor-associated 99.7 8.3E-18 2.8E-22 102.9 2.5 52 11-62 26-77 (141)
33 1g25_A CDK-activating kinase a 99.7 3.1E-17 1.1E-21 87.9 3.5 49 15-63 2-55 (65)
34 1rmd_A RAG1; V(D)J recombinati 99.7 3.3E-17 1.1E-21 97.1 3.7 50 14-63 21-70 (116)
35 2ea6_A Ring finger protein 4; 99.7 5.2E-17 1.8E-21 87.7 4.1 54 8-62 7-67 (69)
36 3ng2_A RNF4, snurf, ring finge 99.7 3.5E-17 1.2E-21 89.0 2.9 53 10-63 4-63 (71)
37 3htk_C E3 SUMO-protein ligase 99.6 2.2E-16 7.4E-21 104.4 6.0 76 5-87 170-249 (267)
38 3hcs_A TNF receptor-associated 99.6 1.2E-16 4E-21 100.4 3.7 55 9-63 11-65 (170)
39 1e4u_A Transcriptional repress 99.6 3.2E-16 1.1E-20 86.9 4.9 53 11-63 6-62 (78)
40 2ecn_A Ring finger protein 141 99.6 1.9E-16 6.4E-21 85.9 3.4 58 4-63 3-60 (70)
41 2ect_A Ring finger protein 126 99.6 6.8E-16 2.3E-20 85.4 4.6 56 7-63 6-64 (78)
42 1bor_A Transcription factor PM 99.6 1.5E-16 5.3E-21 82.9 1.5 47 13-63 3-49 (56)
43 2ecm_A Ring finger and CHY zin 99.6 4.9E-16 1.7E-20 80.4 3.3 48 14-62 3-54 (55)
44 2kiz_A E3 ubiquitin-protein li 99.6 1.3E-15 4.3E-20 82.4 5.0 54 9-63 7-63 (69)
45 2xeu_A Ring finger protein 4; 99.6 3.3E-16 1.1E-20 83.4 2.5 48 15-63 2-56 (64)
46 2ep4_A Ring finger protein 24; 99.6 1.6E-15 5.6E-20 83.0 4.6 55 8-63 7-64 (74)
47 1iym_A EL5; ring-H2 finger, ub 99.6 1.2E-15 4.1E-20 79.0 3.6 48 14-62 3-54 (55)
48 2l0b_A E3 ubiquitin-protein li 99.6 1.4E-15 4.9E-20 86.5 4.1 50 12-62 36-88 (91)
49 1chc_A Equine herpes virus-1 r 99.6 1.1E-15 3.8E-20 82.4 3.4 49 14-63 3-52 (68)
50 1x4j_A Ring finger protein 38; 99.5 2.3E-15 8E-20 82.6 3.2 49 13-62 20-71 (75)
51 4ap4_A E3 ubiquitin ligase RNF 99.5 2.6E-15 9E-20 90.3 2.8 50 13-63 4-60 (133)
52 1v87_A Deltex protein 2; ring- 99.5 9E-15 3.1E-19 86.2 4.0 49 15-63 24-94 (114)
53 4ic3_A E3 ubiquitin-protein li 99.5 4.8E-15 1.6E-19 81.3 1.6 45 14-63 22-67 (74)
54 2vje_A E3 ubiquitin-protein li 99.4 5.3E-14 1.8E-18 75.1 2.7 50 12-62 4-56 (64)
55 2ecl_A Ring-box protein 2; RNF 99.4 1.3E-13 4.5E-18 76.8 4.2 50 13-63 12-76 (81)
56 2y1n_A E3 ubiquitin-protein li 99.4 9.3E-14 3.2E-18 96.6 4.2 48 16-63 332-379 (389)
57 2ecg_A Baculoviral IAP repeat- 99.4 5.4E-14 1.8E-18 77.2 2.0 44 15-63 24-68 (75)
58 4ap4_A E3 ubiquitin ligase RNF 99.4 2.1E-13 7.2E-18 81.8 2.8 51 12-63 68-125 (133)
59 2vje_B MDM4 protein; proto-onc 99.4 2.8E-13 9.4E-18 72.1 2.6 48 14-62 5-55 (63)
60 1wim_A KIAA0161 protein; ring 99.3 7.6E-13 2.6E-17 75.5 4.0 49 14-62 3-65 (94)
61 2ea5_A Cell growth regulator w 99.3 1.4E-12 4.7E-17 70.3 4.0 48 11-63 10-58 (68)
62 2yho_A E3 ubiquitin-protein li 99.3 3.1E-13 1E-17 75.0 1.3 45 14-63 16-61 (79)
63 3dpl_R Ring-box protein 1; ubi 99.3 1.9E-12 6.4E-17 75.5 4.3 47 15-62 36-100 (106)
64 2d8s_A Cellular modulator of i 99.2 1.2E-11 3.9E-16 68.7 4.5 56 8-63 7-70 (80)
65 2bay_A PRE-mRNA splicing facto 99.2 3.8E-12 1.3E-16 67.2 2.2 47 16-63 3-50 (61)
66 3t6p_A Baculoviral IAP repeat- 99.2 2.8E-12 9.7E-17 88.3 1.5 45 14-63 293-338 (345)
67 4a0k_B E3 ubiquitin-protein li 99.1 1.4E-11 4.7E-16 72.9 0.5 46 16-62 48-111 (117)
68 2ct0_A Non-SMC element 1 homol 98.9 3.3E-09 1.1E-13 57.8 5.8 53 11-63 10-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.7 6.5E-09 2.2E-13 59.1 3.4 46 18-63 3-49 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.7 2.6E-08 9E-13 52.1 4.0 49 14-62 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 98.6 2.3E-08 7.8E-13 68.6 2.3 51 13-63 305-373 (381)
72 3m62_A Ubiquitin conjugation f 98.2 1.6E-06 5.3E-11 66.2 4.8 73 11-91 886-959 (968)
73 2jun_A Midline-1; B-BOX, TRIM, 97.9 4.7E-06 1.6E-10 47.5 2.3 33 15-47 2-37 (101)
74 3nw0_A Non-structural maintena 97.7 3.2E-05 1.1E-09 50.8 4.1 48 15-62 179-228 (238)
75 2cs3_A Protein C14ORF4, MY039 96.4 0.0056 1.9E-07 33.3 4.1 39 10-48 9-51 (93)
76 3i2d_A E3 SUMO-protein ligase 95.9 0.0075 2.6E-07 41.9 3.6 65 14-85 247-315 (371)
77 4fo9_A E3 SUMO-protein ligase 95.6 0.014 4.6E-07 40.5 3.9 64 14-85 213-281 (360)
78 1weo_A Cellulose synthase, cat 95.5 0.021 7.3E-07 31.6 3.9 48 15-62 15-69 (93)
79 2ko5_A Ring finger protein Z; 95.1 0.014 4.9E-07 32.7 2.4 45 16-63 28-73 (99)
80 1z2q_A LM5-1; membrane protein 94.2 0.051 1.7E-06 29.7 3.3 36 11-46 16-55 (84)
81 3mjh_B Early endosome antigen 93.3 0.0097 3.3E-07 27.1 -0.6 16 15-30 4-19 (34)
82 3t7l_A Zinc finger FYVE domain 91.8 0.17 5.9E-06 28.0 3.1 31 16-46 20-54 (90)
83 1y02_A CARP2, FYVE-ring finger 91.7 0.072 2.5E-06 31.2 1.5 54 7-61 10-67 (120)
84 1vfy_A Phosphatidylinositol-3- 90.4 0.21 7E-06 26.5 2.4 31 15-45 10-44 (73)
85 2lri_C Autoimmune regulator; Z 90.1 0.36 1.2E-05 25.1 3.2 47 14-62 10-61 (66)
86 2yw8_A RUN and FYVE domain-con 90.1 0.18 6.2E-06 27.3 2.1 34 13-46 16-53 (82)
87 1z60_A TFIIH basal transcripti 89.7 0.34 1.2E-05 24.7 2.8 39 18-57 17-58 (59)
88 1joc_A EEA1, early endosomal a 89.6 0.15 5.3E-06 29.9 1.7 32 15-46 68-103 (125)
89 2l5u_A Chromodomain-helicase-D 88.8 0.45 1.5E-05 24.2 2.9 47 12-60 7-58 (61)
90 2ct7_A Ring finger protein 31; 88.7 0.12 4.1E-06 28.3 0.7 29 18-46 27-61 (86)
91 1x4u_A Zinc finger, FYVE domai 88.5 0.38 1.3E-05 26.1 2.7 34 12-45 10-47 (84)
92 2lbm_A Transcriptional regulat 88.2 2.8 9.7E-05 25.1 6.6 47 14-60 61-117 (142)
93 3ttc_A HYPF, transcriptional r 87.0 0.4 1.4E-05 35.8 2.7 54 8-61 9-99 (657)
94 1f62_A Transcription factor WS 86.7 0.36 1.2E-05 23.5 1.7 42 18-59 2-49 (51)
95 1m3v_A FLIN4, fusion of the LI 86.2 0.48 1.6E-05 27.4 2.3 47 16-63 32-81 (122)
96 1wd2_A Ariadne-1 protein homol 86.2 0.054 1.9E-06 27.8 -1.6 33 17-49 7-47 (60)
97 1dvp_A HRS, hepatocyte growth 86.0 0.5 1.7E-05 30.2 2.6 34 12-45 157-194 (220)
98 3vth_A Hydrogenase maturation 85.7 0.76 2.6E-05 34.9 3.7 55 8-62 103-194 (761)
99 1wfk_A Zinc finger, FYVE domai 85.7 0.5 1.7E-05 26.0 2.1 32 14-45 7-42 (88)
100 2gmg_A Hypothetical protein PF 85.6 0.22 7.5E-06 28.4 0.6 30 27-62 66-95 (105)
101 4g9i_A Hydrogenase maturation 85.3 0.67 2.3E-05 35.2 3.3 55 9-63 99-190 (772)
102 2jmo_A Parkin; IBR, E3 ligase, 85.2 0.24 8.1E-06 26.7 0.6 33 16-48 25-70 (80)
103 2k16_A Transcription initiatio 85.1 0.29 9.9E-06 25.9 0.9 49 14-62 16-70 (75)
104 3zyq_A Hepatocyte growth facto 84.6 0.68 2.3E-05 29.8 2.7 35 12-46 160-198 (226)
105 1wil_A KIAA1045 protein; ring 84.4 3.3 0.00011 22.6 4.9 46 13-59 12-75 (89)
106 2lv9_A Histone-lysine N-methyl 83.4 0.56 1.9E-05 26.3 1.7 46 13-59 25-75 (98)
107 1wem_A Death associated transc 83.3 0.83 2.8E-05 24.2 2.3 50 11-61 11-71 (76)
108 2l43_A N-teminal domain from h 83.3 0.89 3E-05 24.9 2.4 54 9-62 18-77 (88)
109 2d8v_A Zinc finger FYVE domain 83.2 0.92 3.1E-05 23.6 2.3 35 13-48 5-40 (67)
110 2xqn_T Testin, TESS; metal-bin 82.6 0.82 2.8E-05 26.3 2.3 45 15-62 29-74 (126)
111 2jne_A Hypothetical protein YF 82.4 0.076 2.6E-06 29.9 -2.2 41 16-62 32-72 (101)
112 2e6r_A Jumonji/ARID domain-con 81.5 0.27 9.1E-06 27.3 -0.2 52 9-60 9-66 (92)
113 2jrp_A Putative cytoplasmic pr 80.8 0.062 2.1E-06 29.3 -2.8 11 17-27 3-13 (81)
114 2o35_A Hypothetical protein DU 80.6 0.64 2.2E-05 26.2 1.2 12 37-48 42-53 (105)
115 3fyb_A Protein of unknown func 80.4 0.66 2.3E-05 26.1 1.2 12 37-48 41-52 (104)
116 1mm2_A MI2-beta; PHD, zinc fin 80.0 0.59 2E-05 23.7 0.9 46 13-60 6-56 (61)
117 3lqh_A Histone-lysine N-methyl 79.7 2.5 8.7E-05 26.4 3.9 46 17-62 3-65 (183)
118 2xjy_A Rhombotin-2; oncoprotei 79.2 1.2 4.1E-05 25.7 2.2 47 15-62 28-77 (131)
119 2yql_A PHD finger protein 21A; 78.6 0.39 1.3E-05 24.0 -0.1 45 13-59 6-55 (56)
120 2ku3_A Bromodomain-containing 78.5 1.2 4.3E-05 23.3 1.9 50 11-60 11-66 (71)
121 3ql9_A Transcriptional regulat 78.2 2.6 9E-05 24.9 3.4 46 15-60 56-111 (129)
122 1we9_A PHD finger family prote 78.1 0.46 1.6E-05 24.2 0.1 49 13-61 3-59 (64)
123 2rgt_A Fusion of LIM/homeobox 78.0 2.4 8.2E-05 25.7 3.4 33 15-47 32-64 (169)
124 2yt5_A Metal-response element- 77.0 0.42 1.5E-05 24.5 -0.2 49 13-61 3-62 (66)
125 1wen_A Inhibitor of growth fam 77.0 2.6 8.9E-05 22.1 2.9 48 13-61 13-66 (71)
126 2zet_C Melanophilin; complex, 76.6 1.2 4.2E-05 27.0 1.7 46 14-60 66-117 (153)
127 1wfh_A Zinc finger (AN1-like) 76.4 4.6 0.00016 20.8 3.6 32 10-41 9-41 (64)
128 1rut_X Flinc4, fusion protein 76.4 0.8 2.7E-05 28.4 0.9 47 15-62 31-80 (188)
129 1zbd_B Rabphilin-3A; G protein 75.9 0.94 3.2E-05 26.9 1.0 47 14-60 53-107 (134)
130 1wg2_A Zinc finger (AN1-like) 73.8 5.1 0.00018 20.6 3.4 31 11-41 10-41 (64)
131 2jvx_A NF-kappa-B essential mo 73.6 0.59 2E-05 20.1 -0.2 14 16-29 3-16 (28)
132 1weu_A Inhibitor of growth fam 73.5 2.4 8.3E-05 23.4 2.3 46 14-61 34-86 (91)
133 3o36_A Transcription intermedi 73.4 0.96 3.3E-05 28.0 0.7 45 15-61 3-52 (184)
134 2jtn_A LIM domain-binding prot 72.9 2.2 7.5E-05 26.2 2.2 44 16-62 87-130 (182)
135 2cup_A Skeletal muscle LIM-pro 72.1 1.2 4.2E-05 24.4 0.8 45 15-62 32-77 (101)
136 3mpx_A FYVE, rhogef and PH dom 71.8 0.79 2.7E-05 31.9 0.0 32 16-47 375-410 (434)
137 1x62_A C-terminal LIM domain p 71.7 6 0.00021 20.6 3.6 44 10-62 9-52 (79)
138 1fp0_A KAP-1 corepressor; PHD 71.5 2.2 7.6E-05 23.5 1.8 47 12-60 21-72 (88)
139 2puy_A PHD finger protein 21A; 71.3 0.76 2.6E-05 23.2 -0.1 46 14-61 3-53 (60)
140 1xwh_A Autoimmune regulator; P 70.7 0.76 2.6E-05 23.7 -0.2 47 13-61 5-56 (66)
141 1wff_A Riken cDNA 2810002D23 p 69.6 5.9 0.0002 21.6 3.2 27 15-41 24-52 (85)
142 2ysm_A Myeloid/lymphoid or mix 68.0 1.6 5.5E-05 24.7 0.8 45 14-58 5-55 (111)
143 1wev_A Riken cDNA 1110020M19; 67.7 0.51 1.7E-05 25.9 -1.4 48 15-62 15-74 (88)
144 3u5n_A E3 ubiquitin-protein li 67.5 1.2 4.2E-05 28.1 0.2 45 15-61 6-55 (207)
145 1x4w_A Hypothetical protein FL 66.7 4.5 0.00015 21.1 2.2 30 12-41 11-44 (67)
146 6rxn_A Rubredoxin; electron tr 66.3 2.2 7.5E-05 20.5 0.9 35 16-60 4-39 (46)
147 2pv0_B DNA (cytosine-5)-methyl 66.2 6.8 0.00023 27.4 3.7 46 14-60 91-148 (386)
148 3o70_A PHD finger protein 13; 66.1 1.5 5E-05 22.8 0.3 48 11-59 14-66 (68)
149 1x61_A Thyroid receptor intera 65.8 7.4 0.00025 19.6 3.1 33 16-48 33-66 (72)
150 2fiy_A Protein FDHE homolog; F 64.4 0.81 2.8E-05 31.0 -1.1 46 14-60 180-231 (309)
151 3v43_A Histone acetyltransfera 63.3 1.9 6.6E-05 24.5 0.5 27 33-59 82-111 (112)
152 1x64_A Alpha-actinin-2 associa 62.8 13 0.00046 19.7 3.9 41 13-62 22-62 (89)
153 1wfl_A Zinc finger protein 216 62.5 13 0.00045 19.7 3.6 27 15-41 24-51 (74)
154 2l4z_A DNA endonuclease RBBP8, 62.4 6.7 0.00023 22.5 2.7 28 16-43 61-89 (123)
155 3a1b_A DNA (cytosine-5)-methyl 61.0 6.6 0.00023 24.0 2.6 44 15-60 78-134 (159)
156 1iml_A CRIP, cysteine rich int 60.9 5.7 0.0002 20.4 2.1 44 15-61 26-71 (76)
157 2ro1_A Transcription intermedi 60.6 2.6 8.7E-05 26.4 0.7 45 17-61 3-50 (189)
158 2d8x_A Protein pinch; LIM doma 60.5 6.6 0.00023 19.8 2.3 31 17-47 32-63 (70)
159 2dar_A PDZ and LIM domain prot 60.5 8.8 0.0003 20.5 2.9 26 17-42 26-51 (90)
160 2lce_A B-cell lymphoma 6 prote 60.3 13 0.00045 18.4 3.5 46 10-62 11-56 (74)
161 2d8z_A Four and A half LIM dom 60.1 9.1 0.00031 19.2 2.8 32 16-47 31-63 (70)
162 1wfe_A Riken cDNA 2310008M20 p 59.1 14 0.00049 20.1 3.5 29 13-41 22-53 (86)
163 2cur_A Skeletal muscle LIM-pro 58.9 11 0.00038 18.8 3.0 32 16-47 31-63 (69)
164 3asl_A E3 ubiquitin-protein li 58.6 2.3 8E-05 22.1 0.2 42 18-59 20-68 (70)
165 1wig_A KIAA1808 protein; LIM d 55.9 5 0.00017 20.6 1.3 30 17-46 32-63 (73)
166 1wep_A PHF8; structural genomi 55.8 15 0.00052 19.3 3.3 50 11-61 7-64 (79)
167 1wfp_A Zinc finger (AN1-like) 55.7 21 0.00073 18.9 3.7 29 13-41 22-51 (74)
168 4gzn_C ZFP-57, zinc finger pro 55.5 12 0.00041 18.4 2.7 38 15-63 3-44 (60)
169 1x6a_A LIMK-2, LIM domain kina 55.3 14 0.0005 19.0 3.1 31 17-47 42-75 (81)
170 2ffw_A Midline-1; B-BOX, ring 55.0 21 0.00073 18.7 3.8 32 14-45 28-62 (78)
171 2lv2_A Insulinoma-associated p 54.9 22 0.00075 18.8 3.9 41 12-63 24-68 (85)
172 2cor_A Pinch protein; LIM doma 54.6 20 0.00068 18.5 3.6 39 15-62 14-52 (79)
173 1x4l_A Skeletal muscle LIM-pro 54.0 7.3 0.00025 19.7 1.7 30 16-45 35-65 (72)
174 1x4v_A Hypothetical protein LO 53.8 21 0.00072 18.2 3.4 27 15-41 11-40 (63)
175 1l8d_A DNA double-strand break 53.4 14 0.00048 20.6 3.0 13 51-63 47-59 (112)
176 3shb_A E3 ubiquitin-protein li 52.9 2.3 7.7E-05 22.7 -0.4 27 33-59 46-76 (77)
177 2e6s_A E3 ubiquitin-protein li 52.8 2.6 9.1E-05 22.4 -0.2 42 18-59 28-76 (77)
178 1nyp_A Pinch protein; LIM doma 52.6 8.2 0.00028 19.1 1.8 28 17-44 32-60 (66)
179 1j2o_A FLIN2, fusion of rhombo 52.4 16 0.00056 20.4 3.2 35 15-49 29-66 (114)
180 3c6w_A P28ING5, inhibitor of g 51.6 2.7 9.2E-05 21.1 -0.2 44 14-59 7-57 (59)
181 1wyh_A SLIM 2, skeletal muscle 51.4 10 0.00034 19.1 2.0 31 17-47 34-65 (72)
182 2ri7_A Nucleosome-remodeling f 51.4 3.6 0.00012 25.0 0.3 48 13-61 5-60 (174)
183 3c5k_A HD6, histone deacetylas 50.6 6.4 0.00022 22.4 1.2 26 16-41 24-49 (109)
184 3vhs_A ATPase wrnip1; zinc fin 50.3 12 0.00042 15.5 1.7 11 52-62 7-17 (29)
185 3ask_A E3 ubiquitin-protein li 48.9 4 0.00014 26.4 0.2 42 18-59 176-224 (226)
186 2dj7_A Actin-binding LIM prote 48.2 9.3 0.00032 20.0 1.6 13 15-27 14-26 (80)
187 1wys_A Riken cDNA 2310008M20 p 48.1 30 0.001 18.3 3.5 29 12-40 10-41 (75)
188 1x3h_A Leupaxin; paxillin fami 47.9 19 0.00066 18.4 2.9 30 17-46 42-72 (80)
189 1wew_A DNA-binding family prot 47.7 12 0.00041 19.7 2.0 47 14-61 14-73 (78)
190 3o7a_A PHD finger protein 13 v 47.5 4.8 0.00016 19.5 0.3 44 15-59 3-51 (52)
191 2d8y_A Eplin protein; LIM doma 47.3 16 0.00055 19.4 2.5 31 17-47 43-74 (91)
192 2ctu_A Zinc finger protein 483 47.3 15 0.00051 17.8 2.3 35 14-62 16-50 (73)
193 2vnf_A ING 4, P29ING4, inhibit 46.7 3.4 0.00012 20.8 -0.3 44 15-59 9-58 (60)
194 2l3k_A Rhombotin-2, linker, LI 46.6 16 0.00055 20.7 2.6 35 14-48 34-70 (123)
195 2cuq_A Four and A half LIM dom 45.9 22 0.00076 18.2 2.9 30 17-46 42-72 (80)
196 2jmi_A Protein YNG1, ING1 homo 45.4 4.6 0.00016 22.2 0.1 46 13-59 23-75 (90)
197 1nui_A DNA primase/helicase; z 45.4 4.9 0.00017 26.0 0.2 38 1-42 1-39 (255)
198 1x4k_A Skeletal muscle LIM-pro 45.0 14 0.00047 18.5 2.0 31 17-47 34-65 (72)
199 2rsd_A E3 SUMO-protein ligase 44.8 3.2 0.00011 21.3 -0.6 46 13-59 7-64 (68)
200 1x63_A Skeletal muscle LIM-pro 44.0 17 0.0006 18.7 2.3 10 18-27 17-26 (82)
201 2lq6_A Bromodomain-containing 43.6 36 0.0012 18.3 3.5 38 8-45 9-50 (87)
202 1b8t_A Protein (CRP1); LIM dom 43.4 20 0.00069 22.0 2.8 41 17-60 143-184 (192)
203 2g6q_A Inhibitor of growth pro 42.6 4.5 0.00015 20.5 -0.2 44 14-59 9-59 (62)
204 2g45_A Ubiquitin carboxyl-term 41.6 20 0.0007 20.9 2.5 28 14-41 32-59 (129)
205 1vd4_A Transcription initiatio 40.4 1.8 6.3E-05 21.3 -2.0 38 14-63 12-51 (62)
206 2kwj_A Zinc finger protein DPF 40.2 2.3 7.9E-05 24.3 -1.8 28 33-60 78-108 (114)
207 2dlo_A Thyroid receptor-intera 40.2 28 0.00095 17.9 2.7 30 17-46 42-73 (81)
208 3d00_A Tungsten formylmethanof 39.0 9.8 0.00034 23.8 0.9 26 14-44 161-186 (191)
209 1g47_A Pinch protein; LIM doma 38.9 23 0.0008 17.9 2.3 42 12-62 7-50 (77)
210 2cu8_A Cysteine-rich protein 2 38.9 28 0.00094 17.6 2.6 38 16-62 9-47 (76)
211 2lvu_A Zinc finger and BTB dom 45.0 6.5 0.00022 14.8 0.0 10 18-27 4-13 (26)
212 2epr_A POZ-, at HOOK-, and zin 38.6 28 0.00097 15.4 3.9 18 12-29 8-25 (48)
213 1a7i_A QCRP2 (LIM1); LIM domai 38.1 11 0.00036 19.6 0.8 31 17-47 35-66 (81)
214 1ard_A Yeast transcription fac 38.0 13 0.00045 14.0 1.0 9 18-26 4-12 (29)
215 2iyb_E Testin, TESS, TES; LIM 37.8 13 0.00045 18.4 1.1 11 17-27 33-43 (65)
216 2elr_A Zinc finger protein 406 37.6 14 0.00047 15.0 1.0 13 16-28 9-21 (36)
217 2csz_A Synaptotagmin-like prot 37.6 29 0.00098 18.4 2.4 46 13-59 22-72 (76)
218 2lvr_A Zinc finger and BTB dom 43.1 7.3 0.00025 15.0 0.0 7 54-60 6-12 (30)
219 2ee8_A Protein ODD-skipped-rel 36.4 48 0.0016 17.4 5.3 17 12-28 13-29 (106)
220 2egq_A FHL1 protein; LIM domai 36.1 19 0.00064 18.3 1.6 11 17-27 16-26 (77)
221 2lvt_A Zinc finger and BTB dom 42.3 7.6 0.00026 14.9 0.0 10 18-27 4-13 (29)
222 1znf_A 31ST zinc finger from X 35.9 7.3 0.00025 14.6 -0.1 10 18-27 3-12 (27)
223 2m0e_A Zinc finger and BTB dom 35.9 8.8 0.0003 14.5 0.2 10 18-27 4-13 (29)
224 1wee_A PHD finger family prote 35.7 11 0.00037 19.5 0.6 48 12-60 12-66 (72)
225 3f6q_B LIM and senescent cell 35.0 19 0.00065 17.8 1.5 12 16-27 11-22 (72)
226 4gne_A Histone-lysine N-methyl 34.9 26 0.00087 19.8 2.1 47 12-61 11-63 (107)
227 4ayb_P DNA-directed RNA polyme 34.8 32 0.0011 16.5 2.1 9 53-61 25-33 (48)
228 2uzg_A Ubiquitin carboxyl-term 34.8 23 0.00077 19.5 1.8 26 16-41 25-53 (97)
229 1p7a_A BF3, BKLF, kruppel-like 34.4 9.8 0.00034 15.7 0.2 14 15-28 10-23 (37)
230 2m0d_A Zinc finger and BTB dom 34.4 7.2 0.00025 14.9 -0.2 11 17-27 4-14 (30)
231 2vpb_A Hpygo1, pygopus homolog 34.0 25 0.00085 17.8 1.8 32 13-44 5-41 (65)
232 1x68_A FHL5 protein; four-and- 33.9 23 0.00079 18.0 1.7 10 18-27 7-16 (76)
233 2kvh_A Zinc finger and BTB dom 33.7 7.7 0.00026 14.7 -0.2 9 18-26 5-13 (27)
234 1klr_A Zinc finger Y-chromosom 33.5 17 0.00057 13.7 0.9 10 18-27 4-13 (30)
235 2kvf_A Zinc finger and BTB dom 33.3 15 0.00051 13.8 0.7 10 53-62 5-14 (28)
236 2kdx_A HYPA, hydrogenase/ureas 32.9 17 0.00058 20.7 1.2 22 33-61 78-100 (119)
237 2els_A Zinc finger protein 406 32.7 12 0.00042 15.3 0.4 13 16-28 9-21 (36)
238 1paa_A Yeast transcription fac 31.8 12 0.0004 14.4 0.2 11 17-27 3-13 (30)
239 1v6g_A Actin binding LIM prote 31.8 21 0.00071 18.4 1.3 36 18-62 17-52 (81)
240 2m0f_A Zinc finger and BTB dom 31.5 6.7 0.00023 14.9 -0.6 11 17-27 3-13 (29)
241 1rik_A E6APC1 peptide; E6-bind 31.3 8.7 0.0003 14.6 -0.2 11 17-27 3-13 (29)
242 1yuz_A Nigerythrin; rubrythrin 31.2 18 0.00063 22.7 1.2 10 52-61 187-196 (202)
243 2kpi_A Uncharacterized protein 30.3 31 0.0011 17.0 1.8 15 13-27 7-21 (56)
244 3pwf_A Rubrerythrin; non heme 30.0 19 0.00064 22.0 1.1 10 52-61 154-163 (170)
245 2e72_A POGO transposable eleme 29.8 16 0.00056 17.6 0.6 13 50-62 11-23 (49)
246 2a20_A Regulating synaptic mem 29.6 39 0.0013 17.1 2.0 14 12-25 5-18 (62)
247 2enh_A Zinc finger protein 28 29.4 17 0.00058 15.9 0.6 16 14-29 10-25 (46)
248 2elt_A Zinc finger protein 406 29.2 18 0.00061 14.6 0.7 12 16-27 9-20 (36)
249 1lv3_A Hypothetical protein YA 28.7 14 0.00049 19.2 0.3 11 52-62 10-20 (68)
250 2xb1_A Pygopus homolog 2, B-ce 28.6 5.1 0.00018 22.6 -1.6 47 16-62 3-63 (105)
251 1zfo_A LAsp-1; LIM domain, zin 28.6 21 0.00072 15.1 0.8 25 18-42 5-30 (31)
252 2yte_A Zinc finger protein 473 28.5 14 0.00049 15.7 0.3 15 15-29 9-23 (42)
253 2elx_A Zinc finger protein 406 28.2 11 0.00037 15.2 -0.2 13 16-28 7-19 (35)
254 2eov_A Zinc finger protein 484 27.6 15 0.00052 16.0 0.3 16 14-29 10-25 (46)
255 1erd_A Pheromone ER-2; NMR {Eu 27.3 17 0.0006 16.1 0.4 13 33-45 11-23 (40)
256 2ida_A Hypothetical protein; z 27.2 44 0.0015 18.7 2.2 26 15-40 17-46 (102)
257 4rxn_A Rubredoxin; electron tr 27.1 23 0.0008 17.4 0.9 12 13-24 33-44 (54)
258 2eos_A B-cell lymphoma 6 prote 27.1 15 0.00053 15.7 0.2 15 15-29 10-24 (42)
259 2j9u_B VPS36, vacuolar protein 26.9 26 0.0009 18.6 1.1 12 12-23 13-24 (76)
260 2ytb_A Zinc finger protein 32; 26.8 15 0.00052 15.6 0.2 15 15-29 10-24 (42)
261 1e8j_A Rubredoxin; iron-sulfur 26.6 27 0.00091 17.0 1.1 12 13-24 33-44 (52)
262 1x4s_A Protein FON, zinc finge 26.6 47 0.0016 16.7 2.0 35 11-45 6-44 (59)
263 2kvg_A Zinc finger and BTB dom 26.5 18 0.00063 13.5 0.4 11 53-63 5-15 (27)
264 2lcq_A Putative toxin VAPC6; P 26.4 30 0.001 20.7 1.5 10 53-62 150-159 (165)
265 2elq_A Zinc finger protein 406 26.0 12 0.00043 15.3 -0.2 14 15-28 8-21 (36)
266 1loi_A Cyclic 3',5'-AMP specif 25.9 4.6 0.00016 16.3 -1.5 10 38-47 7-16 (26)
267 2emg_A Zinc finger protein 484 25.6 17 0.00059 15.9 0.3 16 14-29 10-25 (46)
268 2ely_A Zinc finger protein 224 25.5 22 0.00074 15.5 0.6 16 14-29 10-25 (46)
269 2yu5_A Zinc finger protein 473 25.3 16 0.00056 15.8 0.2 15 15-29 11-25 (44)
270 1yk4_A Rubredoxin, RD; electro 25.2 26 0.00091 17.0 0.9 12 13-24 32-43 (52)
271 2i5o_A DNA polymerase ETA; zin 25.0 19 0.00065 16.5 0.3 12 52-63 10-21 (39)
272 2en9_A Zinc finger protein 28 25.0 18 0.00062 15.8 0.3 16 14-29 10-25 (46)
273 2en7_A Zinc finger protein 268 24.9 17 0.00059 15.6 0.2 16 14-29 10-25 (44)
274 2elp_A Zinc finger protein 406 24.9 29 0.00098 14.1 1.0 13 16-28 9-21 (37)
275 2eon_A ZFP-95, zinc finger pro 24.7 19 0.00063 15.8 0.3 16 14-29 10-25 (46)
276 1f2i_G Fusion of N-terminal 17 24.7 68 0.0023 15.4 3.7 46 10-62 13-60 (73)
277 2bai_A Genome polyprotein; zin 24.7 42 0.0014 14.4 1.4 6 54-59 19-24 (32)
278 2v3b_B Rubredoxin 2, rubredoxi 24.6 26 0.00089 17.2 0.8 12 13-24 33-44 (55)
279 2ehe_A Four and A half LIM dom 24.6 56 0.0019 16.7 2.3 10 18-27 17-26 (82)
280 2epz_A Zinc finger protein 28 24.5 18 0.00061 15.8 0.2 16 14-29 10-25 (46)
281 1vq8_1 50S ribosomal protein L 24.2 3.8 0.00013 20.6 -2.3 25 35-59 16-40 (57)
282 2enf_A Zinc finger protein 347 24.1 19 0.00066 15.7 0.3 16 14-29 10-25 (46)
283 1dx8_A Rubredoxin; electron tr 24.1 27 0.00092 18.1 0.9 12 13-24 37-48 (70)
284 2epq_A POZ-, at HOOK-, and zin 24.0 24 0.00083 15.3 0.6 16 14-29 8-23 (45)
285 2ytg_A ZFP-95, zinc finger pro 23.8 18 0.00061 15.8 0.1 19 14-32 10-28 (46)
286 2eq2_A Zinc finger protein 347 23.8 18 0.00063 15.8 0.2 16 14-29 10-25 (46)
287 1rim_A E6APC2 peptide; E6-bind 23.6 30 0.001 13.8 0.9 8 54-61 5-12 (33)
288 2ytr_A Zinc finger protein 347 23.5 18 0.00062 15.8 0.1 16 14-29 10-25 (46)
289 2eq1_A Zinc finger protein 347 23.5 19 0.00063 15.8 0.1 16 14-29 10-25 (46)
290 2eoq_A Zinc finger protein 224 23.3 19 0.00066 15.7 0.2 16 14-29 10-25 (46)
291 2en3_A ZFP-95, zinc finger pro 23.2 19 0.00065 15.7 0.2 16 14-29 10-25 (46)
292 2yth_A Zinc finger protein 224 23.2 20 0.0007 15.6 0.3 16 14-29 10-25 (46)
293 2eop_A Zinc finger protein 268 23.2 20 0.0007 15.6 0.3 16 14-29 10-25 (46)
294 2yti_A Zinc finger protein 347 23.0 19 0.00065 15.7 0.1 16 14-29 10-25 (46)
295 2elv_A Zinc finger protein 406 23.0 16 0.00053 14.9 -0.2 14 15-28 8-21 (36)
296 1srk_A Zinc finger protein ZFP 22.9 16 0.00054 14.7 -0.2 13 16-28 7-19 (35)
297 2epx_A Zinc finger protein 28 22.8 43 0.0015 14.4 1.4 16 14-29 10-25 (47)
298 2eoj_A Zinc finger protein 268 22.8 15 0.00052 15.8 -0.3 15 15-29 11-25 (44)
299 1wvk_A AT2G23090/F21P24.15; st 22.6 18 0.00062 19.7 0.0 11 16-26 45-55 (86)
300 2wbt_A B-129; zinc finger; 2.7 22.6 83 0.0029 17.1 2.9 13 50-62 99-111 (129)
301 2ytn_A Zinc finger protein 347 22.6 22 0.00074 15.5 0.3 16 14-29 10-25 (46)
302 2ept_A Zinc finger protein 32; 22.6 29 0.00098 14.6 0.7 14 15-28 9-22 (41)
303 2elo_A Zinc finger protein 406 22.6 15 0.00053 15.0 -0.3 13 16-28 9-21 (37)
304 3ihp_A Ubiquitin carboxyl-term 22.5 57 0.0019 25.2 2.6 26 15-40 214-239 (854)
305 2emk_A Zinc finger protein 28 22.3 22 0.00075 15.5 0.3 16 14-29 10-25 (46)
306 2eom_A ZFP-95, zinc finger pro 22.2 21 0.00071 15.6 0.2 16 14-29 10-25 (46)
307 2eml_A Zinc finger protein 28 22.1 17 0.00057 15.9 -0.2 16 14-29 10-25 (46)
308 2eoy_A Zinc finger protein 473 22.1 21 0.00071 15.6 0.2 16 14-29 10-25 (46)
309 2ep1_A Zinc finger protein 484 22.1 21 0.00071 15.5 0.2 16 14-29 10-25 (46)
310 2em5_A ZFP-95, zinc finger pro 22.0 17 0.00059 15.9 -0.2 16 14-29 10-25 (46)
311 2em6_A Zinc finger protein 224 22.0 23 0.00077 15.5 0.3 16 14-29 10-25 (46)
312 2epc_A Zinc finger protein 32; 22.0 17 0.00059 15.4 -0.2 15 15-29 10-24 (42)
313 2eou_A Zinc finger protein 473 21.9 21 0.00072 15.4 0.2 16 14-29 10-25 (44)
314 2emi_A Zinc finger protein 484 21.8 17 0.00059 15.9 -0.2 16 14-29 10-25 (46)
315 2el5_A Zinc finger protein 268 21.7 17 0.00059 15.4 -0.2 15 15-29 9-23 (42)
316 2eox_A Zinc finger protein 473 21.5 18 0.00061 15.6 -0.2 16 14-29 10-25 (44)
317 2elz_A Zinc finger protein 224 21.4 24 0.00082 15.4 0.3 16 14-29 10-25 (46)
318 2ytm_A Zinc finger protein 28 21.4 22 0.00075 15.6 0.2 16 14-29 10-25 (46)
319 2eof_A Zinc finger protein 268 21.4 17 0.00059 15.6 -0.2 16 14-29 10-25 (44)
320 2em3_A Zinc finger protein 28 21.2 18 0.00062 15.8 -0.2 16 14-29 10-25 (46)
321 1njq_A Superman protein; zinc- 21.1 18 0.00063 15.1 -0.2 13 16-28 6-18 (39)
322 2eq4_A Zinc finger protein 224 21.1 22 0.00075 15.4 0.1 16 14-29 10-25 (46)
323 1x4i_A Inhibitor of growth pro 21.0 53 0.0018 16.8 1.6 46 14-61 4-56 (70)
324 3j21_e 50S ribosomal protein L 21.0 5.9 0.0002 20.2 -2.0 25 35-59 16-40 (62)
325 2yts_A Zinc finger protein 484 21.0 18 0.00063 15.7 -0.2 16 14-29 10-25 (46)
326 2em0_A Zinc finger protein 224 21.0 22 0.00077 15.4 0.1 16 14-29 10-25 (46)
327 2yu8_A Zinc finger protein 347 20.9 23 0.00078 15.4 0.2 17 14-30 10-26 (46)
328 2eow_A Zinc finger protein 347 20.8 18 0.00063 15.7 -0.2 16 14-29 10-25 (46)
329 2epw_A Zinc finger protein 268 20.7 23 0.00079 15.4 0.2 16 14-29 10-25 (46)
330 2ep0_A Zinc finger protein 28 20.7 32 0.0011 14.9 0.7 16 14-29 10-25 (46)
331 2yto_A Zinc finger protein 484 20.7 19 0.00064 15.8 -0.2 16 14-29 10-25 (46)
332 2gvi_A Conserved hypothetical 20.7 21 0.00073 22.4 0.0 32 14-45 170-202 (204)
333 2vrw_B P95VAV, VAV1, proto-onc 20.7 57 0.0019 22.3 2.2 32 13-44 354-390 (406)
334 2ytt_A Zinc finger protein 473 20.6 38 0.0013 14.7 0.9 16 14-29 10-25 (46)
335 2epv_A Zinc finger protein 268 20.6 19 0.00064 15.6 -0.2 15 14-28 10-24 (44)
336 2eq3_A Zinc finger protein 347 20.4 18 0.00063 15.7 -0.3 16 14-29 10-25 (46)
337 2yqq_A Zinc finger HIT domain- 20.4 93 0.0032 15.3 2.7 32 13-46 9-42 (56)
338 2ene_A Zinc finger protein 347 20.4 20 0.00068 15.6 -0.1 16 14-29 10-25 (46)
339 2ytf_A Zinc finger protein 268 20.3 19 0.00066 15.6 -0.2 16 14-29 10-25 (46)
340 2yrm_A B-cell lymphoma 6 prote 20.2 43 0.0015 14.2 1.1 13 16-28 10-22 (43)
341 2ep2_A Zinc finger protein 484 20.0 20 0.00067 15.7 -0.2 16 14-29 10-25 (46)
No 1
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.88 E-value=6.2e-24 Score=126.11 Aligned_cols=96 Identities=32% Similarity=0.737 Sum_probs=74.7
Q ss_pred CCCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHh
Q psy18179 8 SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY 87 (108)
Q Consensus 8 ~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (108)
.......+++.|+||++.+.+|++++|||+||..||.+|+..+...||.||..+..........+..+|..+.+++++++
T Consensus 7 ~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 7 KDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp TTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred ccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 34566778999999999999999999999999999999998766789999999874322223345667888999999999
Q ss_pred hHHHHhhhhccchhhh
Q psy18179 88 KKEVDQKLFDQDDGVW 103 (108)
Q Consensus 88 ~~~~~~~~~~~~~~~~ 103 (108)
+.+.+.+..+.+.+++
T Consensus 87 p~~~~~r~~~~e~e~~ 102 (115)
T 3l11_A 87 PRECKLRASGQESEEV 102 (115)
T ss_dssp HHHHHHHHHC------
T ss_pred CHHHHHHHhhhhHHHH
Confidence 9998888777665543
No 2
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-21 Score=109.67 Aligned_cols=78 Identities=24% Similarity=0.625 Sum_probs=62.7
Q ss_pred cCCCCCCCCCccccccccccccCceecC-CCCcchHHhHHHHhhcC-CCcccccccccchhhhcCCCCChHHHHHHHHHH
Q psy18179 6 CNSNNTLTPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-NLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQI 83 (108)
Q Consensus 6 ~~~~~~~~~~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (108)
.+++.....+++.|+||+++|.+|++++ |||+||..||..|+... ...||.||..+.. ...+..|..+.+++
T Consensus 3 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~------~~~~~~n~~l~~~i 76 (92)
T 3ztg_A 3 LGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS------PDALIANKFLRQAV 76 (92)
T ss_dssp SSSSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC------TTSCEECHHHHHHH
T ss_pred CCcccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC------ccccCcCHHHHHHH
Confidence 3455566788999999999999999999 99999999999999743 3679999998742 23566677888888
Q ss_pred HHHhhH
Q psy18179 84 QKYYKK 89 (108)
Q Consensus 84 ~~~~~~ 89 (108)
+.+...
T Consensus 77 ~~~~~~ 82 (92)
T 3ztg_A 77 NNFKNE 82 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877554
No 3
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.83 E-value=1.6e-21 Score=117.05 Aligned_cols=73 Identities=26% Similarity=0.707 Sum_probs=62.8
Q ss_pred CCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhhHHHH
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVD 92 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (108)
.+++.|+||++.+.+|++++|||+||..||..|+..+...||.||..+.. ...+..|..+.+++++++|+..+
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~~~~n~~l~~~i~~~~p~~~~ 122 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR------SYAMQVNQPLQTVLNQLFPGYGN 122 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT------TCCCCCCHHHHHHHHHHSTTTTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC------CCCCCCCHHHHHHHHHHcccccc
Confidence 45789999999999999999999999999999998666689999999873 24566788899999999987543
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.83 E-value=3.3e-21 Score=107.03 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhh
Q psy18179 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK 88 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (108)
...+++.|+||++.|.+|++++|||+||+.||.+|+..+...||.||..+.. .++..|..+.++++.+..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~-------~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-------AGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-------CCCEECTTTHHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh-------hhCccCHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998756789999998873 344555666677766643
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.82 E-value=1.6e-20 Score=106.00 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=63.3
Q ss_pred CCCCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHH
Q psy18179 7 NSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY 86 (108)
Q Consensus 7 ~~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (108)
+.......++|.||||+++|.+||+++|||+||+.||.+|+... .+||.|+..+.. .++..|..+.++++.+
T Consensus 5 e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~-------~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-PTDPFNRQMLTE-------SMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCG-------GGCEECHHHHHHHHHH
T ss_pred hhhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-CCCCCCcCCCCh-------HhcchHHHHHHHHHHH
Confidence 34445667899999999999999999999999999999999854 579999998873 3566778888888888
Q ss_pred hhHH
Q psy18179 87 YKKE 90 (108)
Q Consensus 87 ~~~~ 90 (108)
....
T Consensus 77 ~~~~ 80 (85)
T 2kr4_A 77 MREK 80 (85)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.79 E-value=1.2e-19 Score=104.90 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCCCCCccccccccccccCceecCCC-CcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhh
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK 88 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (108)
.....++|.||||+++|.+||+++|| |+||+.||.+|+... .+||.|+..+. ...+..|..|.++++.+..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~-~~cP~~~~~l~-------~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLT-------MDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCC-------TTTSEECHHHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC-CCCCCCCCCCC-------hhhceEcHHHHHHHHHHHH
Confidence 34456799999999999999999999 999999999999864 57999999887 3456778888898888765
Q ss_pred H
Q psy18179 89 K 89 (108)
Q Consensus 89 ~ 89 (108)
.
T Consensus 88 ~ 88 (98)
T 1wgm_A 88 E 88 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.9e-20 Score=114.91 Aligned_cols=73 Identities=29% Similarity=0.714 Sum_probs=61.8
Q ss_pred CCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhhHHHH
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVD 92 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (108)
.+.+.|+||++.+.+|++++|||+||..||..|+..+...||.||..+.. ...+..|..+.++++.+++...+
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~l~~n~~l~~lv~~~~p~~~~ 148 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ------NYIMIPNEILQTLLDLFFPGYSK 148 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT------TCCCCBCHHHHHHHHHHSTTTTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC------CCCCCCCHHHHHHHHHHhhHhhc
Confidence 35789999999999999999999999999999999766689999999884 22456778888999988876443
No 8
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.79 E-value=9.1e-20 Score=105.70 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=60.9
Q ss_pred CCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhh
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK 88 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (108)
.....+++.||||+++|.+||+++|||+||+.||..|+.. ..+||.|+..+. ..++..|..+.++++.+..
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-------~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLT-------ESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCC-------TTSSEECHHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCC-------hhhceECHHHHHHHHHHHH
Confidence 3455779999999999999999999999999999999985 468999999987 3466778888888887764
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-19 Score=94.73 Aligned_cols=57 Identities=21% Similarity=0.550 Sum_probs=49.4
Q ss_pred cCCCCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 6 CNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 6 ~~~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
.........+++.|+||++.+.+|+.++|||+||..||.+|+......||.||..+.
T Consensus 5 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 5 SSGFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CSCSCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hhhhhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 344455667889999999999999999999999999999999655567999999887
No 10
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.76 E-value=2.5e-19 Score=112.20 Aligned_cols=72 Identities=29% Similarity=0.591 Sum_probs=58.0
Q ss_pred CCCCccccccccccccCceec-CCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhhH
Q psy18179 12 LTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 89 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (108)
...+++.|+||++.+.+|+.+ +|||+||..||..|+..+...||.||..+.. ...+..|..+.+++..+++.
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS------KRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS------GGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC------cccCCcCHHHHHHHHHHHcc
Confidence 345678999999999999998 9999999999999999756789999998863 23455677778888777664
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.76 E-value=1.5e-19 Score=104.78 Aligned_cols=50 Identities=24% Similarity=0.671 Sum_probs=45.4
Q ss_pred CCccccccccccccCcee-cCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 14 PDSVLCLVCQGILIKPIK-LPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.+++.|+||++.+.+|+. ++|||+||..||.+|+......||.||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 467899999999999999 89999999999999999765679999999873
No 12
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.75 E-value=4e-19 Score=108.37 Aligned_cols=66 Identities=24% Similarity=0.735 Sum_probs=52.4
Q ss_pred CCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHH
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK 85 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (108)
.+++.|+||++.+.+|++++|||+||..||..|+... ..||.||..+... ..+..++..+..++..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~-----~~~~~~~~~i~~~~~~ 116 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK-----TYSLVLDNCINKMVNN 116 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE-----EECHHHHHHHHHHHTT
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC-----CCccchhHHHHHHHHH
Confidence 3567899999999999999999999999999999865 5799999988631 2345566666655543
No 13
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.75 E-value=6e-19 Score=103.46 Aligned_cols=73 Identities=22% Similarity=0.539 Sum_probs=58.6
Q ss_pred CCCccccccccccccCceec-CCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhhH
Q psy18179 13 TPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 89 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (108)
..+++.|+||++.+.+|+++ +|||+||..||..|+..+ ..||.||..+... .....+..|..+.++++++++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~---~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT---RPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS---CGGGGEEECHHHHHHHHHHSTT
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc---CcccccCcCHHHHHHHHHHhhh
Confidence 45789999999999999998 999999999999999865 5799999988731 0011345677788888887764
No 14
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5e-19 Score=101.55 Aligned_cols=69 Identities=23% Similarity=0.472 Sum_probs=57.1
Q ss_pred CCCccccccccccccCceecC-CCCcchHHhHHHHhhcC-----CCcccc--cccc-cchhhhcCCCCChHHHHHHHHHH
Q psy18179 13 TPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-----NLSCPM--CRKR-LSIWLRRNKDFSLLIDENLWNQI 83 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~-----~~~CP~--Cr~~-~~~~~~~~~~~~~~~~~~l~~~~ 83 (108)
..++|.||||+++|.+||+++ |||+||+.||..|+..+ ...||. |+.. +. ..++..|..|.+++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-------~~~L~pn~~L~~~I 76 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-------KSDLIQDEALRRAI 76 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-------GGGEEECHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-------HhhCcCCHHHHHHH
Confidence 467899999999999999996 99999999999999843 467999 8866 55 24567788888888
Q ss_pred HHHhh
Q psy18179 84 QKYYK 88 (108)
Q Consensus 84 ~~~~~ 88 (108)
+.+..
T Consensus 77 ~~~~~ 81 (94)
T 2yu4_A 77 ENHNK 81 (94)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87754
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=95.07 Aligned_cols=57 Identities=28% Similarity=0.781 Sum_probs=48.7
Q ss_pred cCCCCCCCCCccccccccccccCceecC-CCCcchHHhHHHHhhcC-CCcccccccccc
Q psy18179 6 CNSNNTLTPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-NLSCPMCRKRLS 62 (108)
Q Consensus 6 ~~~~~~~~~~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 62 (108)
.+.......+++.|+||++.+.+|+.++ |||+||..||.+|+... ...||.||..+.
T Consensus 5 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 5 SSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3444566778999999999999999999 99999999999999854 357999999765
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.74 E-value=5e-20 Score=102.34 Aligned_cols=55 Identities=27% Similarity=0.716 Sum_probs=47.8
Q ss_pred CCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcC------CCcccccccccch
Q psy18179 9 NNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS------NLSCPMCRKRLSI 63 (108)
Q Consensus 9 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~------~~~CP~Cr~~~~~ 63 (108)
......+++.|+||++.+.+|+.++|||+||..||.+|+... ...||.||..+..
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 344567789999999999999999999999999999999852 5679999999873
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=95.11 Aligned_cols=55 Identities=16% Similarity=0.487 Sum_probs=47.5
Q ss_pred CCCCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 7 NSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 7 ~~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+.......+.+.|+||++.+.+|+.++|||+||..||.+|+... ..||+||..+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~ 60 (81)
T 2csy_A 6 SGGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-PRCYICDQPTG 60 (81)
T ss_dssp CCCSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC
T ss_pred CCCcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-CcCCCcCcccc
Confidence 33445566789999999999999999999999999999999864 57999999886
No 18
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=99.76 Aligned_cols=68 Identities=18% Similarity=0.396 Sum_probs=55.0
Q ss_pred CCccccccccccccCceec-CCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhhH
Q psy18179 14 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 89 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (108)
.+++.|+||++.+.+|+.+ +|||+||..||..|+..+ ..||.||..+.. .++..|..+.++++.+...
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~-------~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTE-------PDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCG-------GGCEECHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCCh-------hhCCcCHHHHHHHHHHHHH
Confidence 3568999999999999998 899999999999999865 579999998873 2345566677777766443
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.8e-18 Score=92.54 Aligned_cols=59 Identities=27% Similarity=0.593 Sum_probs=50.4
Q ss_pred cccCCCCCCCCCccccccccccccCceec-CCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 4 EDCNSNNTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 4 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.+.........+++.|+||++.+.+|+.+ +|||+||..||.+|+... ..||.||..+..
T Consensus 3 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 62 (72)
T 2djb_A 3 SGSSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCS
T ss_pred CcchhhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCc
Confidence 34455666677899999999999999997 999999999999999864 579999998873
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.4e-18 Score=92.18 Aligned_cols=53 Identities=30% Similarity=0.894 Sum_probs=46.5
Q ss_pred CCCCCCccccccccccccCceecCCCCcchHHhHHHHhhc--CCCcccccccccc
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN--SNLSCPMCRKRLS 62 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~ 62 (108)
.....+++.|+||++.+.+|+.++|||+||..||..|+.. ....||.||..+.
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3456678999999999999999999999999999999973 4467999999886
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.72 E-value=3.3e-18 Score=114.24 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=60.6
Q ss_pred CCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhh
Q psy18179 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK 88 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (108)
....+.+.||||+++|.+||+++|||+||+.||.+|+..++.+||.|+.++.. .++..|..+.++++.+..
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~-------~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ-------EQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG-------GGCEECHHHHHHHHHHHT
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch-------hcCcccHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999998665569999999873 356677888888887764
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.1e-18 Score=92.23 Aligned_cols=57 Identities=23% Similarity=0.616 Sum_probs=49.4
Q ss_pred cCCCCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 6 CNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 6 ~~~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.........+++.|+||++.+.+|+.++|||.||..||.+|+... ..||+||..+..
T Consensus 5 ~s~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 5 SSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE 61 (71)
T ss_dssp CCCCCCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred CCCCcccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence 344556677889999999999999999999999999999999865 579999998874
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=89.01 Aligned_cols=48 Identities=33% Similarity=0.958 Sum_probs=42.2
Q ss_pred CCCCCCccccccccccccCceecCCCCcchHHhHHHHhhc--CCCccccc
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN--SNLSCPMC 57 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~--~~~~CP~C 57 (108)
.....+++.|+||++.+.+|+.++|||+||..||.+|+.. ....||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456778999999999999999999999999999999984 44679987
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.4e-19 Score=98.86 Aligned_cols=54 Identities=26% Similarity=0.719 Sum_probs=47.2
Q ss_pred CCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcC-----CCcccccccccch
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-----NLSCPMCRKRLSI 63 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~ 63 (108)
.....+++.|+||++.+.+|+.++|||+||..||..|+... ...||.||..+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34456789999999999999999999999999999999862 5689999998873
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=94.50 Aligned_cols=57 Identities=28% Similarity=0.711 Sum_probs=49.1
Q ss_pred CCCCCCCCCccccccccccccC----ceecCCCCcchHHhHHHHhhcC--CCcccccccccch
Q psy18179 7 NSNNTLTPDSVLCLVCQGILIK----PIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRLSI 63 (108)
Q Consensus 7 ~~~~~~~~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 63 (108)
........+.+.|+||++.+.+ |+.++|||+||..||.+|+... ...||.||..+..
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4445667788999999999998 9999999999999999999854 4679999998864
No 26
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.71 E-value=9.5e-18 Score=105.95 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhh
Q psy18179 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK 88 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (108)
....+.|.||||+++|.+||+++|||+||+.||..|+..++.+||.|+..+.. .++.+|..|.++++.+..
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-------~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-------DQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-------GGCEECHHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-------hhCcchHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999998654479999998873 356677888888887753
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.70 E-value=3.9e-18 Score=101.46 Aligned_cols=54 Identities=20% Similarity=0.522 Sum_probs=48.3
Q ss_pred CCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
+....+++.|+||++.+.+|+.++|||+||..||..|+..+...||.||..+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 456677899999999999999999999999999999998665579999998873
No 28
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.70 E-value=6.1e-18 Score=100.48 Aligned_cols=64 Identities=28% Similarity=0.522 Sum_probs=52.1
Q ss_pred CCccccccccccccCceec-CCCCcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHh
Q psy18179 14 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY 87 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (108)
.+++.|+||++.+.+|+++ +|||+||..||..|+. ..||.||..+. ..++..|..+.+++..+.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-------~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW-------IQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS-------CSSCCCCHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc-------cccccccHHHHHHHHHHH
Confidence 4689999999999999999 9999999999999987 56999999886 234455566666666543
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.70 E-value=1.5e-17 Score=97.86 Aligned_cols=50 Identities=20% Similarity=0.742 Sum_probs=44.1
Q ss_pred CCccccccccccccCceecCCCCcchHHhHHHHhhcC--CCcccccccccch
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRLSI 63 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 63 (108)
.+.+.|+||++.+.+|+.++|||+||..||..|+... ...||.||..+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3468999999999999999999999999999999853 2579999998874
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=86.00 Aligned_cols=51 Identities=25% Similarity=0.720 Sum_probs=43.4
Q ss_pred CCCCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhc--CCCccccc
Q psy18179 7 NSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN--SNLSCPMC 57 (108)
Q Consensus 7 ~~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~--~~~~CP~C 57 (108)
........+++.|+||++.+.+|+.++|||+||..||.+|+.. ....||+|
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 6 SGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3445566778999999999999999999999999999999764 45679987
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-18 Score=97.88 Aligned_cols=54 Identities=30% Similarity=0.708 Sum_probs=46.9
Q ss_pred CCCCCCccccccccccccCceecCCCCcchHHhHHHHhhc-----CCCcccccccccch
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN-----SNLSCPMCRKRLSI 63 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 63 (108)
.....+.+.|+||++.+.+|+.++|||+||..|+..|+.. +...||.||..+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3455678999999999999999999999999999999875 24679999998873
No 32
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.68 E-value=8.3e-18 Score=102.91 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=46.7
Q ss_pred CCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 11 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
....+++.|+||++++.+|++++|||+||..||.+|+..+...||.||..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4567889999999999999999999999999999999877668999999764
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.67 E-value=3.1e-17 Score=87.94 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=42.7
Q ss_pred Cccccccccc-cccCc----eecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 15 DSVLCLVCQG-ILIKP----IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 15 ~~~~C~IC~~-~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
+++.|+||++ .+.+| +.++|||+||..||.+|+..+...||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 89998 4679999999999999987666789999998873
No 34
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.67 E-value=3.3e-17 Score=97.10 Aligned_cols=50 Identities=30% Similarity=0.671 Sum_probs=45.4
Q ss_pred CCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.+++.|+||++.+.+|+.++|||+||..||.+|+...+..||.||..+..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45789999999999999999999999999999998755679999999874
No 35
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-17 Score=87.73 Aligned_cols=54 Identities=26% Similarity=0.658 Sum_probs=46.4
Q ss_pred CCCCCCCCccccccccccccCc-------eecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 8 SNNTLTPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 8 ~~~~~~~~~~~C~IC~~~~~~p-------~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
.......+.+.|+||++.+.+| +.++|||.||..||.+|+... ..||+||..+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 67 (69)
T 2ea6_A 7 GTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-SSCTTTCCCCC
T ss_pred ccccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-CCCCCCCCccC
Confidence 3445567789999999999987 788999999999999999864 47999999875
No 36
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.66 E-value=3.5e-17 Score=88.99 Aligned_cols=53 Identities=26% Similarity=0.651 Sum_probs=45.3
Q ss_pred CCCCCCccccccccccccCc-------eecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 10 NTLTPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p-------~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.....+++.|+||++.+.+| +.++|||+||..||.+|+... ..||.||..+..
T Consensus 4 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 4 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 63 (71)
T ss_dssp --CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCC
T ss_pred CCCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccCh
Confidence 34556789999999999988 788999999999999999866 479999998873
No 37
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.2e-16 Score=104.40 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=60.6
Q ss_pred ccCCCCCCCCCccccccccccccCceec-CCCCcchHHhHHHHhhcC-CCcccc--cccccchhhhcCCCCChHHHHHHH
Q psy18179 5 DCNSNNTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNS-NLSCPM--CRKRLSIWLRRNKDFSLLIDENLW 80 (108)
Q Consensus 5 ~~~~~~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~-~~~CP~--Cr~~~~~~~~~~~~~~~~~~~~l~ 80 (108)
|-+..+.....++.||||+++|.+||+. .|||+||+.||..|+..+ ...||. |+..+. ..++.+|..|.
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-------~~dL~pN~~L~ 242 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-------MRDFVRDPIME 242 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-------GGGEEECHHHH
T ss_pred CccceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-------hhhCCcCHHHH
Confidence 3344445567899999999999999985 999999999999999853 468999 999876 34566778787
Q ss_pred HHHHHHh
Q psy18179 81 NQIQKYY 87 (108)
Q Consensus 81 ~~~~~~~ 87 (108)
++++.+.
T Consensus 243 ~lve~~k 249 (267)
T 3htk_C 243 LRCKIAK 249 (267)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 38
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=100.38 Aligned_cols=55 Identities=20% Similarity=0.494 Sum_probs=48.7
Q ss_pred CCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 9 NNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 9 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.+....+++.|+||++++.+|+.++|||+||..||.+|+..+...||.||..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3456778899999999999999999999999999999998655579999998874
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.63 E-value=3.2e-16 Score=86.85 Aligned_cols=53 Identities=32% Similarity=0.611 Sum_probs=43.7
Q ss_pred CCCCCcccccccccccc--CceecC--CCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 11 TLTPDSVLCLVCQGILI--KPIKLP--CNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~--~p~~l~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
....+++.||||++.+. +++.++ |||+||..|+.+++......||.||+.+..
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34578899999999885 455555 999999999999987666789999998874
No 40
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-16 Score=85.95 Aligned_cols=58 Identities=24% Similarity=0.647 Sum_probs=48.7
Q ss_pred cccCCCCCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 4 EDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 4 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
+.....+....+.+.|+||++.+.+ +.++|||.||..||.+|+.. ...||.||..+..
T Consensus 3 ~~~~~~~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 3 SGSSGRVKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTG 60 (70)
T ss_dssp CCSSCCCCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTC
T ss_pred chhhhhhhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccC
Confidence 3444555667788999999999999 88999999999999999985 4579999998873
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=6.8e-16 Score=85.36 Aligned_cols=56 Identities=29% Similarity=0.545 Sum_probs=45.9
Q ss_pred CCCCCCCCCccccccccccccCc---eecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 7 NSNNTLTPDSVLCLVCQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 7 ~~~~~~~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
+.......+++.|+||++.|..+ +.++|||.||..||.+|+... ..||+||..+..
T Consensus 6 s~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (78)
T 2ect_A 6 SGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTG 64 (78)
T ss_dssp CCCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCC
T ss_pred CCCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCC
Confidence 33445567789999999999866 446999999999999999865 579999999874
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.60 E-value=1.5e-16 Score=82.93 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=41.2
Q ss_pred CCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 13 TPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
..+++.|+||++.+.+|+.++|||+||..|+..| ...||.||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 3567899999999999999999999999999773 4579999998874
No 43
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.60 E-value=4.9e-16 Score=80.45 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=41.5
Q ss_pred CCccccccccccccC----ceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 14 PDSVLCLVCQGILIK----PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
.++..|+||++.+.+ ++.++|||.||..||.+|+... ..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 356789999999865 6778999999999999999876 57999998764
No 44
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=82.43 Aligned_cols=54 Identities=26% Similarity=0.578 Sum_probs=44.4
Q ss_pred CCCCCCCcccccccccccc---CceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 9 NNTLTPDSVLCLVCQGILI---KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 9 ~~~~~~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
+.....++..|+||++.+. .++.++|||.||..||..|+.... .||+||..+..
T Consensus 7 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 63 (69)
T 2kiz_A 7 EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEA 63 (69)
T ss_dssp TCCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCS
T ss_pred CcCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccC
Confidence 3345566789999999885 456789999999999999998764 69999998873
No 45
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.60 E-value=3.3e-16 Score=83.38 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=42.5
Q ss_pred CccccccccccccCc-------eecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 15 DSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p-------~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
+++.|+||++.+.+| +.++|||.||..|+.+|+... ..||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCc
Confidence 568899999999987 778999999999999999874 579999998873
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=83.03 Aligned_cols=55 Identities=24% Similarity=0.462 Sum_probs=45.6
Q ss_pred CCCCCCCCccccccccccccCceec---CCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 8 SNNTLTPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 8 ~~~~~~~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
..+....++..|+||++.+..+..+ +|||.||..||.+|+.... .||+||..+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~ 64 (74)
T 2ep4_A 7 GKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQ 64 (74)
T ss_dssp SCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSS
T ss_pred cccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccc
Confidence 3445566788999999999876554 9999999999999998664 79999998864
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.58 E-value=1.2e-15 Score=78.99 Aligned_cols=48 Identities=33% Similarity=0.681 Sum_probs=41.4
Q ss_pred CCccccccccccccC---ceecC-CCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 14 PDSVLCLVCQGILIK---PIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+++..|+||++.+.+ ++.++ |||.||..||.+|+... ..||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 467789999999987 77787 99999999999999865 57999998764
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=86.54 Aligned_cols=50 Identities=26% Similarity=0.618 Sum_probs=43.5
Q ss_pred CCCCccccccccccccC---ceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 12 LTPDSVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
...++..|+||++.+.. ++.++|||.||..||..|+... ..||+||..+.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCC
Confidence 45677899999999886 7778999999999999999865 47999999876
No 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.58 E-value=1.1e-15 Score=82.39 Aligned_cols=49 Identities=24% Similarity=0.632 Sum_probs=42.4
Q ss_pred CCccccccccccccCc-eecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 14 PDSVLCLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
..+..|+||++.+.+| +.++|||.||..|+.+|+..+ ..||.||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 4567899999999997 677999999999999999865 479999998763
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=82.65 Aligned_cols=49 Identities=29% Similarity=0.712 Sum_probs=42.7
Q ss_pred CCCccccccccccccCc---eecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 13 TPDSVLCLVCQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
..++..|+||++.+..+ +.++|||.||..||.+|+... ..||+||..+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCC
Confidence 44678999999999877 667999999999999999865 46999999876
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.53 E-value=2.6e-15 Score=90.26 Aligned_cols=50 Identities=28% Similarity=0.702 Sum_probs=44.1
Q ss_pred CCCccccccccccccCc-------eecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 13 TPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p-------~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
..+++.|+||++.+.+| +.++|||+||..||.+|+... ..||.||+.+..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 60 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTT
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcc
Confidence 35678999999999998 889999999999999999865 479999998874
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.51 E-value=9e-15 Score=86.19 Aligned_cols=49 Identities=24% Similarity=0.540 Sum_probs=40.6
Q ss_pred CccccccccccccCce------------------ecCCCCcchHHhHHHHhh----cCCCcccccccccch
Q psy18179 15 DSVLCLVCQGILIKPI------------------KLPCNHHVCLECLQRICD----NSNLSCPMCRKRLSI 63 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~------------------~l~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~ 63 (108)
.+..|+||++.|..|. .++|||.||..||..|+. .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3468999999997764 579999999999999995 234689999998764
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.49 E-value=4.8e-15 Score=81.34 Aligned_cols=45 Identities=29% Similarity=0.793 Sum_probs=40.3
Q ss_pred CCccccccccccccCceecCCCCc-chHHhHHHHhhcCCCcccccccccch
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.+++.|+||++.+.+|+.++|||. ||..|+..| ..||.||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 346889999999999999999999 999999987 469999998863
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.43 E-value=5.3e-14 Score=75.08 Aligned_cols=50 Identities=22% Similarity=0.596 Sum_probs=43.3
Q ss_pred CCCCccccccccccccCceec--CCCCc-chHHhHHHHhhcCCCcccccccccc
Q psy18179 12 LTPDSVLCLVCQGILIKPIKL--PCNHH-VCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~~l--~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+..++..|+||++...+++.+ ||||. ||..|+.+|+..+ ..||+||+.+.
T Consensus 4 ~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 56 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ 56 (64)
T ss_dssp -CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCC
T ss_pred CCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchh
Confidence 456778999999999999987 99999 8999999998755 46999999876
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=76.79 Aligned_cols=50 Identities=20% Similarity=0.592 Sum_probs=41.1
Q ss_pred CCCccccccccccccC--------------ceec-CCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 13 TPDSVLCLVCQGILIK--------------PIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~--------------p~~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
..++..|+||++.|.+ ++.+ +|||.|+..||.+|+.... +||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~ 76 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVV 76 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcch
Confidence 3457789999999976 4455 5999999999999998764 79999998763
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.42 E-value=9.3e-14 Score=96.59 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=43.2
Q ss_pred ccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 16 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 16 ~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
...|+||++.+.+|+.++|||.||..|+..|+......||.||..+..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 379999999999999999999999999999998445679999998874
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-14 Score=77.25 Aligned_cols=44 Identities=30% Similarity=0.813 Sum_probs=38.6
Q ss_pred CccccccccccccCceecCCCCc-chHHhHHHHhhcCCCcccccccccch
Q psy18179 15 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
+++.|+||++.+.+|+.++|||. ||..|+.+. ..||.||..+..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 46789999999999999999999 999999642 469999998863
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.37 E-value=2.1e-13 Score=81.85 Aligned_cols=51 Identities=27% Similarity=0.707 Sum_probs=44.8
Q ss_pred CCCCccccccccccccCc-------eecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 12 LTPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p-------~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
...+.+.|+||++.+.+| +.++|||.||..||.+|+... .+||.||..+..
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 125 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCCh
Confidence 456789999999999887 788999999999999999865 479999998873
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.36 E-value=2.8e-13 Score=72.07 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=41.9
Q ss_pred CCccccccccccccCceec--CCCCc-chHHhHHHHhhcCCCcccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL--PCNHH-VCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l--~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
.....|+||++...+++.+ ||||. ||..|+.+++..+ ..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhh
Confidence 4466899999999999887 99998 9999999998765 57999999886
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=7.6e-13 Score=75.52 Aligned_cols=49 Identities=29% Similarity=0.600 Sum_probs=40.5
Q ss_pred CCccccccccccccCceec---CCCCcchHHhHHHHhhc-------CCCcccc--cccc--cc
Q psy18179 14 PDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICDN-------SNLSCPM--CRKR--LS 62 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~--~~ 62 (108)
.+.+.|+||++.+..|+.+ +|||.||..||..++.. ....||. |+.. +.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~ 65 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 65 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEEC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccC
Confidence 3578999999999988764 79999999999998862 2358999 9988 55
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=70.34 Aligned_cols=48 Identities=33% Similarity=0.728 Sum_probs=41.0
Q ss_pred CCCCCccccccccccccCceecCCCCc-chHHhHHHHhhcCCCcccccccccch
Q psy18179 11 TLTPDSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
....+...|+||++...+++.+||||. ||..|+.. ...||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 345568899999999999999999999 99999984 2469999998863
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.32 E-value=3.1e-13 Score=74.97 Aligned_cols=45 Identities=36% Similarity=0.880 Sum_probs=39.7
Q ss_pred CCccccccccccccCceecCCCCc-chHHhHHHHhhcCCCcccccccccch
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.++..|+||++.+.+++.+||||. ||..|+..+. .||.||..+..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 356789999999999999999999 9999998762 69999998874
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=1.9e-12 Score=75.49 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=39.5
Q ss_pred CccccccccccccCc------------------eecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 15 DSVLCLVCQGILIKP------------------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
++-.|+||++.|..+ +.++|||.|+..||..|+... .+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-CcCcCCCCcce
Confidence 456799999998865 336999999999999999865 57999999865
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=68.70 Aligned_cols=56 Identities=23% Similarity=0.575 Sum_probs=44.8
Q ss_pred CCCCCCCCcccccccccccc--CceecCCC-----CcchHHhHHHHhhcCC-Ccccccccccch
Q psy18179 8 SNNTLTPDSVLCLVCQGILI--KPIKLPCN-----HHVCLECLQRICDNSN-LSCPMCRKRLSI 63 (108)
Q Consensus 8 ~~~~~~~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 63 (108)
.......++..|.||++.+. +++.+||. |.|+..||.+|+.... .+||+||..+..
T Consensus 7 ~~s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 7 GTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCCCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 33445566788999998774 67778996 9999999999998543 689999998864
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.22 E-value=3.8e-12 Score=67.17 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=41.9
Q ss_pred ccccccccccccCceec-CCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 16 SVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 16 ~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.+.|||+++.+.+||.+ ++||+|++.||.+|+...+ +||..+..+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCCh
Confidence 47899999999999999 8999999999999998654 59999998863
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.20 E-value=2.8e-12 Score=88.32 Aligned_cols=45 Identities=31% Similarity=0.783 Sum_probs=40.3
Q ss_pred CCccccccccccccCceecCCCCc-chHHhHHHHhhcCCCcccccccccch
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.+++.|+||++.+.+|+.+||||. ||..|+..| ..||.||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 356899999999999999999999 999999877 469999998863
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.08 E-value=1.4e-11 Score=72.89 Aligned_cols=46 Identities=20% Similarity=0.545 Sum_probs=0.4
Q ss_pred ccccccccccccCc-----------------ee-cCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 16 SVLCLVCQGILIKP-----------------IK-LPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 16 ~~~C~IC~~~~~~p-----------------~~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+-.|+||++.|.++ +. ++|+|.|+..||.+|+... .+||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-CcCCCCCCeee
Confidence 45799999998763 22 4899999999999999875 47999999865
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=3.3e-09 Score=57.79 Aligned_cols=53 Identities=21% Similarity=0.562 Sum_probs=42.3
Q ss_pred CCCCCccccccccccccCceec-CCCCcchHHhHHHHhhcC-CCcccccccccch
Q psy18179 11 TLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNS-NLSCPMCRKRLSI 63 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 63 (108)
...+..-.|.||.+++..-... .|+|.|...||.+|++.. ..+||.|+.....
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred hccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3455667899999998854444 799999999999999854 2579999988763
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.75 E-value=6.5e-09 Score=59.12 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=36.9
Q ss_pred ccccccccccC-ceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 18 LCLVCQGILIK-PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 18 ~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
.|++|.--+.. ...+||.|.||..|+..|.+++...||.|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47778766553 34569999999999999987766789999988764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.67 E-value=2.6e-08 Score=52.11 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=39.4
Q ss_pred CCccccccccccccCceecCCC--C---cchHHhHHHHhhc-CCCcccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCN--H---HVCLECLQRICDN-SNLSCPMCRKRLS 62 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~Cg--H---~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 62 (108)
.+.-.|.||++...++..+||. + .|...||.+|+.. ++.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456799999887777777854 4 8999999999984 4578999998875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.56 E-value=2.3e-08 Score=68.60 Aligned_cols=51 Identities=22% Similarity=0.542 Sum_probs=40.1
Q ss_pred CCCccccccccccccC----cee----cCCCCcchHHhHHHHhhcC----------CCcccccccccch
Q psy18179 13 TPDSVLCLVCQGILIK----PIK----LPCNHHVCLECLQRICDNS----------NLSCPMCRKRLSI 63 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~----p~~----l~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~ 63 (108)
.+....|+||+..+.+ |.. ..|||.|+..||.+|++.. ...||.||.+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3567789999998775 322 3699999999999999732 1469999999874
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.19 E-value=1.6e-06 Score=66.25 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=61.5
Q ss_pred CCCCCccccccccccccCceecCCC-CcchHHhHHHHhhcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHHHhhH
Q psy18179 11 TLTPDSVLCLVCQGILIKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 89 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (108)
....++|.|||-.+++.+||+++-| ++|=+..|.+|+..+ .+||.-|.++.. ..+.+|..++..|+.|...
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~-~tdP~Tr~~L~~-------~~liPN~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD-STDPFNRMPLKL-------EDVTPNEELRQKILCFKKQ 957 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCG-------GGCEECHHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC-CCCCCCCCCCCc-------ccccccHHHHHHHHHHHHH
Confidence 3456899999999999999999998 699999999999874 579999998873 3566788999999998765
Q ss_pred HH
Q psy18179 90 EV 91 (108)
Q Consensus 90 ~~ 91 (108)
..
T Consensus 958 ~~ 959 (968)
T 3m62_A 958 KK 959 (968)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.92 E-value=4.7e-06 Score=47.54 Aligned_cols=33 Identities=30% Similarity=0.691 Sum_probs=28.1
Q ss_pred Ccccccccccc-ccCcee--cCCCCcchHHhHHHHh
Q psy18179 15 DSVLCLVCQGI-LIKPIK--LPCNHHVCLECLQRIC 47 (108)
Q Consensus 15 ~~~~C~IC~~~-~~~p~~--l~CgH~fC~~Ci~~~~ 47 (108)
+++.|+||.+. +.+|+. +.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46889999975 678888 8999999999999843
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.73 E-value=3.2e-05 Score=50.78 Aligned_cols=48 Identities=21% Similarity=0.622 Sum_probs=39.4
Q ss_pred CccccccccccccCceec-CCCCcchHHhHHHHhhcC-CCcccccccccc
Q psy18179 15 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNS-NLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 62 (108)
....|.||.++...-+.- .|+|.|...|+..|++.. ...||.|+...+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 366799999998866655 499999999999999753 357999998765
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.43 E-value=0.0056 Score=33.31 Aligned_cols=39 Identities=18% Similarity=0.520 Sum_probs=31.9
Q ss_pred CCCCCCccccccccccccCceecCC----CCcchHHhHHHHhh
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPC----NHHVCLECLQRICD 48 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~C----gH~fC~~Ci~~~~~ 48 (108)
.......+.|.+|.+.+.+-..+.| +|.||..|-...++
T Consensus 9 ~~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 9 PMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SSCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 3446678999999999998766644 79999999988877
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0075 Score=41.86 Aligned_cols=65 Identities=22% Similarity=0.384 Sum_probs=46.3
Q ss_pred CCccccccccccccCceec-CCCCcchHHh--HHHHh-hcCCCcccccccccchhhhcCCCCChHHHHHHHHHHHH
Q psy18179 14 PDSVLCLVCQGILIKPIKL-PCNHHVCLEC--LQRIC-DNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK 85 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~C--i~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (108)
.-.+.|||-...+..|+.- .|.|.-|.+- +.... ......||+|.+.+. ..++.++..+.+++..
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~-------~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA-------LENLAISEFVDDILQN 315 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC-------GGGEEEBHHHHHHHTT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC-------HHHeeEcHHHHHHHHh
Confidence 3468999999999999975 7999966432 22221 245678999999887 3467777777776653
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.56 E-value=0.014 Score=40.46 Aligned_cols=64 Identities=22% Similarity=0.488 Sum_probs=45.9
Q ss_pred CCccccccccccccCceec-CCCCcchHHhHHHHhh----cCCCcccccccccchhhhcCCCCChHHHHHHHHHHHH
Q psy18179 14 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICD----NSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK 85 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (108)
.-.+.|||-...+..|+.- .|.|.-|.+- ..|+. .....||.|.+.+.. .++.++..+.+++..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~-------~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAY-------ESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCG-------GGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCH-------HHeEEcHHHHHHHHh
Confidence 3468899999999999975 7999966432 22322 456789999998873 456777777776653
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.55 E-value=0.021 Score=31.61 Aligned_cols=48 Identities=21% Similarity=0.586 Sum_probs=37.6
Q ss_pred Ccccccccccccc-----Cceec--CCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 15 DSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~-----~p~~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
..-.|.||.+..- ++... .|+-..|+.|++--.+.++..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4568999998744 33333 688889999998777777788999998886
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.11 E-value=0.014 Score=32.66 Aligned_cols=45 Identities=33% Similarity=0.690 Sum_probs=32.3
Q ss_pred ccccccccccccCceecCC-CCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 16 SVLCLVCQGILIKPIKLPC-NHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 16 ~~~C~IC~~~~~~p~~l~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
-+.|..|-...+ -.+.| .|.+|..|+...+..+. .||+|...+..
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSN-RCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSS-EETTTTEECCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhhcc-CCcccCCcCCc
Confidence 355666644333 23455 69999999999888665 59999998875
No 80
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=94.24 E-value=0.051 Score=29.72 Aligned_cols=36 Identities=17% Similarity=0.404 Sum_probs=25.8
Q ss_pred CCCCCccccccccccccCce----ecCCCCcchHHhHHHH
Q psy18179 11 TLTPDSVLCLVCQGILIKPI----KLPCNHHVCLECLQRI 46 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~ 46 (108)
.+..+...|.+|...|.--. --.||+.||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34455678999999876322 2379999999997543
No 81
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=93.31 E-value=0.0097 Score=27.11 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=11.3
Q ss_pred CccccccccccccCce
Q psy18179 15 DSVLCLVCQGILIKPI 30 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~ 30 (108)
+.|.||||+..+..+.
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4578888887777653
No 82
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=91.77 E-value=0.17 Score=27.96 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=22.7
Q ss_pred ccccccccccccCc----eecCCCCcchHHhHHHH
Q psy18179 16 SVLCLVCQGILIKP----IKLPCNHHVCLECLQRI 46 (108)
Q Consensus 16 ~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~ 46 (108)
...|.+|...|.-- .-..||+.||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45799999877622 12379999999997654
No 83
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=91.72 E-value=0.072 Score=31.22 Aligned_cols=54 Identities=19% Similarity=0.438 Sum_probs=29.4
Q ss_pred CCCCCCCCCccccccccccccCce----ecCCCCcchHHhHHHHhhcCCCccccccccc
Q psy18179 7 NSNNTLTPDSVLCLVCQGILIKPI----KLPCNHHVCLECLQRICDNSNLSCPMCRKRL 61 (108)
Q Consensus 7 ~~~~~~~~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 61 (108)
.+.-+|..+...|..|...|.--. --.||..||..|....... ...|-.|-..+
T Consensus 10 ~~~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~~ 67 (120)
T 1y02_A 10 SSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRFR 67 (120)
T ss_dssp ----------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHH
T ss_pred ccCCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHHH
Confidence 333456666778999999876322 2379999999997655432 34588775543
No 84
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=90.35 E-value=0.21 Score=26.47 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=22.6
Q ss_pred CccccccccccccCce----ecCCCCcchHHhHHH
Q psy18179 15 DSVLCLVCQGILIKPI----KLPCNHHVCLECLQR 45 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~ 45 (108)
++-.|.+|...|.--. --.||..||..|...
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3458999998876322 237999999999753
No 85
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.13 E-value=0.36 Score=25.10 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=32.6
Q ss_pred CCccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCcccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRLS 62 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 62 (108)
.....|.||.+-- + +.+ .|...|+..|+...+. .+...||.|.....
T Consensus 10 ~~~~~C~vC~~~~-~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDGT-D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCCT-T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCCC-e-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3456799998642 2 233 6999999999976554 34567999976543
No 86
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=90.07 E-value=0.18 Score=27.31 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCccccccccccccCce----ecCCCCcchHHhHHHH
Q psy18179 13 TPDSVLCLVCQGILIKPI----KLPCNHHVCLECLQRI 46 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~ 46 (108)
..+...|.+|...|.--. --.||..||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 334457999999877322 2379999999997643
No 87
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=89.74 E-value=0.34 Score=24.73 Aligned_cols=39 Identities=33% Similarity=0.742 Sum_probs=26.8
Q ss_pred ccccccccccCcee---cCCCCcchHHhHHHHhhcCCCccccc
Q psy18179 18 LCLVCQGILIKPIK---LPCNHHVCLECLQRICDNSNLSCPMC 57 (108)
Q Consensus 18 ~C~IC~~~~~~p~~---l~CgH~fC~~Ci~~~~~~~~~~CP~C 57 (108)
.|--|+..+.+... -.|++.||..|= .++...-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 48889888865442 269999999993 2333333469987
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=89.64 E-value=0.15 Score=29.93 Aligned_cols=32 Identities=19% Similarity=0.490 Sum_probs=23.1
Q ss_pred CccccccccccccCce----ecCCCCcchHHhHHHH
Q psy18179 15 DSVLCLVCQGILIKPI----KLPCNHHVCLECLQRI 46 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~ 46 (108)
+-..|.+|...|.--. --.||+.||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3457999999877322 2379999999997543
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.77 E-value=0.45 Score=24.22 Aligned_cols=47 Identities=32% Similarity=0.576 Sum_probs=32.4
Q ss_pred CCCCccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCcccccccc
Q psy18179 12 LTPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR 60 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 60 (108)
....+..|.||.+. ..+.+ .|...|...|+..-+. .+...||.|...
T Consensus 7 ~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34556789999873 22333 6888999999986433 345679999653
No 90
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=88.70 E-value=0.12 Score=28.27 Aligned_cols=29 Identities=24% Similarity=0.654 Sum_probs=21.0
Q ss_pred cccccccccc-----CceecC-CCCcchHHhHHHH
Q psy18179 18 LCLVCQGILI-----KPIKLP-CNHHVCLECLQRI 46 (108)
Q Consensus 18 ~C~IC~~~~~-----~p~~l~-CgH~fC~~Ci~~~ 46 (108)
-||-|...+. .++.-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4988877543 234445 9999999998777
No 91
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.54 E-value=0.38 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCCccccccccccccCce----ecCCCCcchHHhHHH
Q psy18179 12 LTPDSVLCLVCQGILIKPI----KLPCNHHVCLECLQR 45 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~ 45 (108)
+..+-..|.+|...|.--. --.||..||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3444567999999876322 237999999999654
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=88.22 E-value=2.8 Score=25.13 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=31.0
Q ss_pred CCccccccccccccCceecCCCCcchHHhHHHHhh----------cCCCcccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD----------NSNLSCPMCRKR 60 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~ 60 (108)
..+..|.+|.+--.--.--.|-.+||..||..-+. .+...||.|+..
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34567888876332101117999999999996542 345789999753
No 93
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=87.02 E-value=0.4 Score=35.82 Aligned_cols=54 Identities=26% Similarity=0.592 Sum_probs=40.7
Q ss_pred CCCCCCCCccccccccccccCce----------ecCCCCcc--------------------hHHhHHHHhh-------cC
Q psy18179 8 SNNTLTPDSVLCLVCQGILIKPI----------KLPCNHHV--------------------CLECLQRICD-------NS 50 (108)
Q Consensus 8 ~~~~~~~~~~~C~IC~~~~~~p~----------~l~CgH~f--------------------C~~Ci~~~~~-------~~ 50 (108)
..+.+..|-..|+-|+..+.+|. .+.||..| |..|..++-. .+
T Consensus 9 ~~~~i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAq 88 (657)
T 3ttc_A 9 MNTQIVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQ 88 (657)
T ss_dssp ---CCCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCT
T ss_pred CCcccCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCC
Confidence 34567889999999999888763 24788887 9999988765 23
Q ss_pred CCccccccccc
Q psy18179 51 NLSCPMCRKRL 61 (108)
Q Consensus 51 ~~~CP~Cr~~~ 61 (108)
...||.|+-.+
T Consensus 89 p~aCp~CGP~l 99 (657)
T 3ttc_A 89 PVACPECGPYL 99 (657)
T ss_dssp TCCCTTTSCCE
T ss_pred CCcCcccCccc
Confidence 46799998776
No 94
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.66 E-value=0.36 Score=23.46 Aligned_cols=42 Identities=29% Similarity=0.605 Sum_probs=27.2
Q ss_pred ccccccccccC-ceec--CCCCcchHHhHHHHhh---cCCCccccccc
Q psy18179 18 LCLVCQGILIK-PIKL--PCNHHVCLECLQRICD---NSNLSCPMCRK 59 (108)
Q Consensus 18 ~C~IC~~~~~~-p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 59 (108)
.|.||...-.. .+.+ .|...|...|+..-+. .+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888764322 2222 6888999999965433 34567999965
No 95
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=86.25 E-value=0.48 Score=27.36 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=35.2
Q ss_pred ccccccccccccC---ceecCCCCcchHHhHHHHhhcCCCcccccccccch
Q psy18179 16 SVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63 (108)
Q Consensus 16 ~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 63 (108)
-|.|..|...|.+ .....=|..||..|..+.+.... .|..|...+..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-AGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-SSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-ccccCCCCcCc
Confidence 3788999988863 33446788899999988775422 59999988873
No 96
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.15 E-value=0.054 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=23.1
Q ss_pred cccccccccccCc-----eecC---CCCcchHHhHHHHhhc
Q psy18179 17 VLCLVCQGILIKP-----IKLP---CNHHVCLECLQRICDN 49 (108)
Q Consensus 17 ~~C~IC~~~~~~p-----~~l~---CgH~fC~~Ci~~~~~~ 49 (108)
-.||-|...+... ++-. |++.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3688888776632 2333 8999999998877653
No 97
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=86.04 E-value=0.5 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCCCccccccccccccCce----ecCCCCcchHHhHHH
Q psy18179 12 LTPDSVLCLVCQGILIKPI----KLPCNHHVCLECLQR 45 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~ 45 (108)
...+.-.|.+|...|.--. .-.||+.||..|...
T Consensus 157 ~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 157 NWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred cCCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3445679999998876221 237999999999654
No 98
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=85.74 E-value=0.76 Score=34.91 Aligned_cols=55 Identities=25% Similarity=0.490 Sum_probs=41.8
Q ss_pred CCCCCCCCccccccccccccCce----------ecCCCCcc--------------------hHHhHHHHhh-------cC
Q psy18179 8 SNNTLTPDSVLCLVCQGILIKPI----------KLPCNHHV--------------------CLECLQRICD-------NS 50 (108)
Q Consensus 8 ~~~~~~~~~~~C~IC~~~~~~p~----------~l~CgH~f--------------------C~~Ci~~~~~-------~~ 50 (108)
..+.+..|-..|+-|+..+.+|. .+.||..| |..|..++-. .+
T Consensus 103 ~~~~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAq 182 (761)
T 3vth_A 103 GFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQ 182 (761)
T ss_dssp CCCCCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCT
T ss_pred cccccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCC
Confidence 34567788899999999888763 24788666 9999988765 23
Q ss_pred CCcccccccccc
Q psy18179 51 NLSCPMCRKRLS 62 (108)
Q Consensus 51 ~~~CP~Cr~~~~ 62 (108)
...||.|+-.+.
T Consensus 183 p~aC~~CGP~l~ 194 (761)
T 3vth_A 183 PVACFDCGPSLS 194 (761)
T ss_dssp TCCCTTTSCCEE
T ss_pred CCcCCccCCeeE
Confidence 467999987765
No 99
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=85.66 E-value=0.5 Score=25.98 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCccccccccccccCce----ecCCCCcchHHhHHH
Q psy18179 14 PDSVLCLVCQGILIKPI----KLPCNHHVCLECLQR 45 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~ 45 (108)
.+...|.+|...|.--. --.||..||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34457999998776322 237999999999754
No 100
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=85.62 E-value=0.22 Score=28.42 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=18.8
Q ss_pred cCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 27 IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 27 ~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
..+....||+.|. .-+.. ...||.|+..-.
T Consensus 66 ~p~~C~~CG~~F~-----~~~~k-PsrCP~CkSe~I 95 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----AEINI-PSRCPKCKSEWI 95 (105)
T ss_dssp CCCBBTTTCCBCC-----CCSSC-CSSCSSSCCCCB
T ss_pred ECcChhhCcCeec-----ccCCC-CCCCcCCCCCcc
Confidence 3555668999992 12222 246999987643
No 101
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=85.33 E-value=0.67 Score=35.25 Aligned_cols=55 Identities=24% Similarity=0.576 Sum_probs=42.4
Q ss_pred CCCCCCCccccccccccccCce----------ecCCCCcc--------------------hHHhHHHHhh-------cCC
Q psy18179 9 NNTLTPDSVLCLVCQGILIKPI----------KLPCNHHV--------------------CLECLQRICD-------NSN 51 (108)
Q Consensus 9 ~~~~~~~~~~C~IC~~~~~~p~----------~l~CgH~f--------------------C~~Ci~~~~~-------~~~ 51 (108)
.+.+..|-..|+-|+..+.+|. .+.||..| |..|-.++-. .+.
T Consensus 99 ~~~i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp 178 (772)
T 4g9i_A 99 DSIIPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEP 178 (772)
T ss_dssp CCCCCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTT
T ss_pred ccccCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCC
Confidence 3457888999999999888763 24788887 9999988765 234
Q ss_pred Ccccccccccch
Q psy18179 52 LSCPMCRKRLSI 63 (108)
Q Consensus 52 ~~CP~Cr~~~~~ 63 (108)
..||.|+-.+..
T Consensus 179 ~aC~~CGP~l~l 190 (772)
T 4g9i_A 179 TACPVCGPSYRL 190 (772)
T ss_dssp CCCTTTSCCEEE
T ss_pred CCCccCCceEEE
Confidence 679999987654
No 102
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=85.25 E-value=0.24 Score=26.74 Aligned_cols=33 Identities=27% Similarity=0.664 Sum_probs=23.1
Q ss_pred cccccc--cccccc-----Cceec------CCCCcchHHhHHHHhh
Q psy18179 16 SVLCLV--CQGILI-----KPIKL------PCNHHVCLECLQRICD 48 (108)
Q Consensus 16 ~~~C~I--C~~~~~-----~p~~l------~CgH~fC~~Ci~~~~~ 48 (108)
..-||- |...+. ..+.- .||+.||..|...|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 666876 776553 22343 5999999999988754
No 103
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=85.15 E-value=0.29 Score=25.89 Aligned_cols=49 Identities=14% Similarity=0.373 Sum_probs=33.2
Q ss_pred CCccccccccccccCceec---CCCCcchHHhHHHHhhc---CCCcccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICDN---SNLSCPMCRKRLS 62 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~ 62 (108)
.+...|+||......-..+ .|..-|...|+.-.... +...||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4456799998765432233 68888999998654432 3577999977654
No 104
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.61 E-value=0.68 Score=29.84 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=25.0
Q ss_pred CCCCccccccccccccCce----ecCCCCcchHHhHHHH
Q psy18179 12 LTPDSVLCLVCQGILIKPI----KLPCNHHVCLECLQRI 46 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~ 46 (108)
...+.-.|.+|...|.--. .-.||+.||..|....
T Consensus 160 ~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 160 DWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred ccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3445678999998776221 2379999999997643
No 105
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.43 E-value=3.3 Score=22.63 Aligned_cols=46 Identities=22% Similarity=0.484 Sum_probs=31.4
Q ss_pred CCCccccccccccccCceec---CCCCcchHHhHHHHhh---------------cCCCccccccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD---------------NSNLSCPMCRK 59 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~---------------~~~~~CP~Cr~ 59 (108)
...+-.|.||...-.. ..+ -|+-.|...|+.+.-. ..+.+||.|..
T Consensus 12 ~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3467789999864433 333 4899999999998611 22467999944
No 106
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.40 E-value=0.56 Score=26.27 Aligned_cols=46 Identities=15% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCCccccccccccccCceec---CCCCcchHHhHHHHhh--cCCCccccccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD--NSNLSCPMCRK 59 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~ 59 (108)
..+.+.| ||......-..+ .|..-|...|+..-.. .....||.|+.
T Consensus 25 ~~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 25 GTDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3455778 898765544344 5888888888854332 12478999964
No 107
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.35 E-value=0.83 Score=24.15 Aligned_cols=50 Identities=16% Similarity=0.485 Sum_probs=32.2
Q ss_pred CCCCCccccccccccccCceec---CCCCcchHHhHHHHh--------hcCCCccccccccc
Q psy18179 11 TLTPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRIC--------DNSNLSCPMCRKRL 61 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~--------~~~~~~CP~Cr~~~ 61 (108)
....+.+.| ||......-..+ .|..=|+..|+.-.. ....+.||.|+...
T Consensus 11 ~~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 11 VYDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp SCCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred ccCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 344556888 899876543333 577788888984321 12457899997644
No 108
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=83.28 E-value=0.89 Score=24.95 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=35.8
Q ss_pred CCCCCCCcccccccccccc---Cceec--CCCCcchHHhHHHHh-hcCCCcccccccccc
Q psy18179 9 NNTLTPDSVLCLVCQGILI---KPIKL--PCNHHVCLECLQRIC-DNSNLSCPMCRKRLS 62 (108)
Q Consensus 9 ~~~~~~~~~~C~IC~~~~~---~p~~l--~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~~~ 62 (108)
......++..|.||...-. +.+.+ .|.-.|...|+..-. ..+...||.|.....
T Consensus 18 ~~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 18 SQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp TTCCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 3444567789999997541 22222 688899999987432 244577999976544
No 109
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=83.20 E-value=0.92 Score=23.60 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=25.3
Q ss_pred CCCccccccccccccCceecCC-CCcchHHhHHHHhh
Q psy18179 13 TPDSVLCLVCQGILIKPIKLPC-NHHVCLECLQRICD 48 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l~C-gH~fC~~Ci~~~~~ 48 (108)
.++..-|.||.+.- .-.-+.| |-.||..|+...-.
T Consensus 5 ~ee~pWC~ICneDA-tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDA-TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCC-CEEETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCC-eEEecCCCCceehHHHHHHHcc
Confidence 44556699999872 2234578 88999999988653
No 110
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=82.64 E-value=0.82 Score=26.30 Aligned_cols=45 Identities=20% Similarity=0.513 Sum_probs=34.3
Q ss_pred CccccccccccccC-ceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 15 DSVLCLVCQGILIK-PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+-|.|..|...|.. +....=|..||..|..+.+. ..|..|...+.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCC
Confidence 45889999988875 34456788999999877543 45999999887
No 111
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.43 E-value=0.076 Score=29.88 Aligned_cols=41 Identities=29% Similarity=0.570 Sum_probs=27.2
Q ss_pred ccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 16 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 16 ~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+..||+|...+..- =++.+|..|-..+... ..||.|.+++.
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~~--a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEMK--ALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEEE--EECTTTCSBCE
T ss_pred cccCccCCCcceec----CCEEECccccchhhcc--ccCcchhhHHH
Confidence 48999999877631 1344488886544333 35999998875
No 112
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.54 E-value=0.27 Score=27.31 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=32.9
Q ss_pred CCCCCCCccccccccccccC-ceec--CCCCcchHHhHHHHhh---cCCCcccccccc
Q psy18179 9 NNTLTPDSVLCLVCQGILIK-PIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR 60 (108)
Q Consensus 9 ~~~~~~~~~~C~IC~~~~~~-p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 60 (108)
+.....+...|.||...-.. .+.+ .|...|+..|+..-+. .+...||.|...
T Consensus 9 s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred chhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 33445566789999875432 2232 6888888888864332 345669998653
No 113
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=80.78 E-value=0.062 Score=29.29 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=6.6
Q ss_pred ccccccccccc
Q psy18179 17 VLCLVCQGILI 27 (108)
Q Consensus 17 ~~C~IC~~~~~ 27 (108)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45777766544
No 114
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=80.60 E-value=0.64 Score=26.20 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=11.0
Q ss_pred cchHHhHHHHhh
Q psy18179 37 HVCLECLQRICD 48 (108)
Q Consensus 37 ~fC~~Ci~~~~~ 48 (108)
.||+.|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 115
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=80.42 E-value=0.66 Score=26.11 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=11.0
Q ss_pred cchHHhHHHHhh
Q psy18179 37 HVCLECLQRICD 48 (108)
Q Consensus 37 ~fC~~Ci~~~~~ 48 (108)
.||+.|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 116
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=79.99 E-value=0.59 Score=23.75 Aligned_cols=46 Identities=22% Similarity=0.454 Sum_probs=30.4
Q ss_pred CCCccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCcccccccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR 60 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 60 (108)
...+..|.||.+.- .+.+ .|...|+..|+..-+. .+...||.|...
T Consensus 6 d~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 34567799998632 2222 5888899999875333 345679999764
No 117
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=79.69 E-value=2.5 Score=26.39 Aligned_cols=46 Identities=17% Similarity=0.405 Sum_probs=30.3
Q ss_pred cccccccccccCce----ec---CCCCcchHHhHHHHh------h----cCCCcccccccccc
Q psy18179 17 VLCLVCQGILIKPI----KL---PCNHHVCLECLQRIC------D----NSNLSCPMCRKRLS 62 (108)
Q Consensus 17 ~~C~IC~~~~~~p~----~l---~CgH~fC~~Ci~~~~------~----~~~~~CP~Cr~~~~ 62 (108)
-.||||...+.+.- .+ .|..=|+..|+.-.- . .....||.|+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 46999998877542 33 577778888874211 1 12578999987654
No 118
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=79.19 E-value=1.2 Score=25.73 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=34.5
Q ss_pred Ccccccccccccc---CceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 15 DSVLCLVCQGILI---KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+-|.|..|...|. .+....=|..||..|..+.+... ..|..|...+.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~-~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD-GLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC-EECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc-cChhhcCCccC
Confidence 4588999998885 24455678889999998876432 15999988775
No 119
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.57 E-value=0.39 Score=23.96 Aligned_cols=45 Identities=22% Similarity=0.589 Sum_probs=29.2
Q ss_pred CCCccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCccccccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRK 59 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 59 (108)
...+..|.||... ..+.+ .|...|...|+..-+. .+...||.|..
T Consensus 6 ~~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456779999874 22222 6888898999874333 33456888853
No 120
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=78.51 E-value=1.2 Score=23.34 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=33.8
Q ss_pred CCCCCccccccccccc---cCceec--CCCCcchHHhHHHHh-hcCCCcccccccc
Q psy18179 11 TLTPDSVLCLVCQGIL---IKPIKL--PCNHHVCLECLQRIC-DNSNLSCPMCRKR 60 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~---~~p~~l--~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~~ 60 (108)
+...++..|.||.+.- .+...+ .|.-.|...|+..-. ..+...||.|...
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4456678899998753 233333 688899999986432 2445679998654
No 121
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=78.22 E-value=2.6 Score=24.86 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=29.5
Q ss_pred CccccccccccccCceecCCCCcchHHhHHHHh----------hcCCCcccccccc
Q psy18179 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC----------DNSNLSCPMCRKR 60 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~~ 60 (108)
.+..|.||.+--.-..--.|-..||..||.+-+ ..+...|+.|+..
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 445688887532211111688999999998642 2345789999553
No 122
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.13 E-value=0.46 Score=24.24 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=31.2
Q ss_pred CCCccccccccccccC-ceec---CCCCcchHHhHHHHhh----cCCCccccccccc
Q psy18179 13 TPDSVLCLVCQGILIK-PIKL---PCNHHVCLECLQRICD----NSNLSCPMCRKRL 61 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~-p~~l---~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~ 61 (108)
..+...|+||...+.+ -..+ .|..=|...|+.-... ...+.||.|+..-
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 4567789999987642 2223 5777777888753322 1457799997643
No 123
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=78.04 E-value=2.4 Score=25.72 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=24.5
Q ss_pred CccccccccccccCceecCCCCcchHHhHHHHh
Q psy18179 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC 47 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~ 47 (108)
+-|.|..|...|.......=|..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f 64 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF 64 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc
Confidence 458899998887754344567889999987765
No 124
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=77.04 E-value=0.42 Score=24.52 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=32.9
Q ss_pred CCCcccccccccccc---Cceec--CCCCcchHHhHHHHh------hcCCCccccccccc
Q psy18179 13 TPDSVLCLVCQGILI---KPIKL--PCNHHVCLECLQRIC------DNSNLSCPMCRKRL 61 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~---~p~~l--~CgH~fC~~Ci~~~~------~~~~~~CP~Cr~~~ 61 (108)
..++..|.||..... ..+.+ .|...|...|+..-+ ..+...||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345678999997643 33333 688899999987532 23457799997654
No 125
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=76.99 E-value=2.6 Score=22.07 Aligned_cols=48 Identities=15% Similarity=0.486 Sum_probs=29.8
Q ss_pred CCCccccccccccccCceec--C--CC-CcchHHhHHHHhh-cCCCccccccccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKL--P--CN-HHVCLECLQRICD-NSNLSCPMCRKRL 61 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l--~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 61 (108)
..+...| ||.+......+. . |. .-|+..|+.-... .+...||.|+...
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 3456778 898864433222 3 65 5788899862211 2457799997654
No 126
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=76.64 E-value=1.2 Score=27.03 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=31.0
Q ss_pred CCcccccccccccc---Ccee--cCCCCcchHHhHHHHhh-cCCCcccccccc
Q psy18179 14 PDSVLCLVCQGILI---KPIK--LPCNHHVCLECLQRICD-NSNLSCPMCRKR 60 (108)
Q Consensus 14 ~~~~~C~IC~~~~~---~p~~--l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~ 60 (108)
.++-.|.+|...|. ++-. ..|.|.+|..|-. +.. .....|-+|.+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 35789999998754 3322 3799999999963 322 234668888653
No 127
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=76.43 E-value=4.6 Score=20.82 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCCCCCccccccccccccC-ceecCCCCcchHH
Q psy18179 10 NTLTPDSVLCLVCQGILIK-PIKLPCNHHVCLE 41 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~-p~~l~CgH~fC~~ 41 (108)
..+....-.|..|...+.- +..-.||.+||..
T Consensus 9 ~~~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 9 PSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CCCCSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCCCCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 3445566889999986553 5666899999974
No 128
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=76.40 E-value=0.8 Score=28.44 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=33.3
Q ss_pred CccccccccccccC---ceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 15 DSVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+-|.|..|...|.. +....=|..||..|..+.+... ..|..|...+.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~-~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC-EECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccC-CccccCCCccc
Confidence 45788889887764 4455668889999988765421 14888887765
No 129
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=75.89 E-value=0.94 Score=26.93 Aligned_cols=47 Identities=19% Similarity=0.485 Sum_probs=30.3
Q ss_pred CCcccccccccccc---Cce--ecCCCCcchHHhHHHHhh---cCCCcccccccc
Q psy18179 14 PDSVLCLVCQGILI---KPI--KLPCNHHVCLECLQRICD---NSNLSCPMCRKR 60 (108)
Q Consensus 14 ~~~~~C~IC~~~~~---~p~--~l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 60 (108)
.++-.|.+|...|. ++- -..|.|.+|..|-..... .....|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 46778999999873 222 237999999998653311 123557777653
No 130
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=73.78 E-value=5.1 Score=20.64 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCCCCccccccccccccC-ceecCCCCcchHH
Q psy18179 11 TLTPDSVLCLVCQGILIK-PIKLPCNHHVCLE 41 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~-p~~l~CgH~fC~~ 41 (108)
.+....-.|..|...+.- +..-.||.+||..
T Consensus 10 ~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 10 RPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CCCCcCCcChhhCCcccccCeEeecCCEeccc
Confidence 344456789999986543 5556899999963
No 131
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=73.65 E-value=0.59 Score=20.12 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=7.1
Q ss_pred ccccccccccccCc
Q psy18179 16 SVLCLVCQGILIKP 29 (108)
Q Consensus 16 ~~~C~IC~~~~~~p 29 (108)
.+.|+||...+-++
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 34555555554444
No 132
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.52 E-value=2.4 Score=23.43 Aligned_cols=46 Identities=15% Similarity=0.546 Sum_probs=28.5
Q ss_pred CCccccccccccccCceec---C--CC-CcchHHhHHHHhh-cCCCccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL---P--CN-HHVCLECLQRICD-NSNLSCPMCRKRL 61 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l---~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 61 (108)
.+...| ||.+..... .+ . |. .-|+..|+.-... .+...||.|+...
T Consensus 34 ~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 345778 999865432 33 3 54 4688888862211 2457899997654
No 133
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=73.44 E-value=0.96 Score=28.03 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=29.8
Q ss_pred CccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCccccccccc
Q psy18179 15 DSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 61 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 61 (108)
.+-.|.+|.+-= + ..+ .|...|+..|+...+. .+...||.|+...
T Consensus 3 ~~~~C~~C~~~g-~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGG-E-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCS-S-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCC-e-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 345699998542 2 222 5888899999865443 3457799998754
No 134
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=72.86 E-value=2.2 Score=26.22 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=25.1
Q ss_pred ccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 16 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 16 ~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
-|.|..|...|.......=|..||..|..+.+. ..|..|+..+.
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~kC~~C~~~I~ 130 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIP 130 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS---CCCTTTCCCCC
T ss_pred cCccCCCCCccCCCceeECCEeeecCccccccc---cccccCCCccC
Confidence 355555655554322223456678888766442 34777877665
No 135
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=72.12 E-value=1.2 Score=24.44 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=32.4
Q ss_pred CccccccccccccCc-eecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 15 DSVLCLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+-|.|..|...|... ....=|..||..|..+.+ ...|..|...+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCccc
Confidence 347888998887643 334568889999976543 346999988876
No 136
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=71.83 E-value=0.79 Score=31.94 Aligned_cols=32 Identities=19% Similarity=0.462 Sum_probs=0.0
Q ss_pred ccccccccccccCc----eecCCCCcchHHhHHHHh
Q psy18179 16 SVLCLVCQGILIKP----IKLPCNHHVCLECLQRIC 47 (108)
Q Consensus 16 ~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~ 47 (108)
...|.+|...|.-- ....||+.||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 46799999877622 123799999999986543
No 137
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.68 E-value=6 Score=20.57 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=28.8
Q ss_pred CCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+......-.|..|.+.+...+...-+..|...| +.|-.|+..+.
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 9 IGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCCCCCCCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCC
Confidence 334455678999998777655545566666655 34777777664
No 138
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.49 E-value=2.2 Score=23.45 Aligned_cols=47 Identities=23% Similarity=0.551 Sum_probs=32.1
Q ss_pred CCCCccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCcccccccc
Q psy18179 12 LTPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR 60 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 60 (108)
....+..|.+|..-- ...+ .|.-.|...|+..-+. .+...||.|...
T Consensus 21 ~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 344567899999742 2222 6888899999866554 345679999754
No 139
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=71.33 E-value=0.76 Score=23.16 Aligned_cols=46 Identities=22% Similarity=0.589 Sum_probs=29.8
Q ss_pred CCccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 61 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 61 (108)
..+..|.||... ....+ .|...|...|+..-+. .+...||.|....
T Consensus 3 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 345679999874 22222 6888899999874333 3446688886543
No 140
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=70.72 E-value=0.76 Score=23.68 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=30.8
Q ss_pred CCCccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCccccccccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 61 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 61 (108)
...+..|.||...- + +.+ .|...|...|+..-+. .+...||.|...-
T Consensus 5 ~~~~~~C~vC~~~g-~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDGG-E-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCCS-S-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCCccCCCCC-C-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 45677899998642 2 222 6888888899874332 3456799997543
No 141
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=69.63 E-value=5.9 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=20.9
Q ss_pred Ccccccccccccc--CceecCCCCcchHH
Q psy18179 15 DSVLCLVCQGILI--KPIKLPCNHHVCLE 41 (108)
Q Consensus 15 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~ 41 (108)
..-.|..|...+. .+..-.||..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 3468999997555 37777899999974
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.01 E-value=1.6 Score=24.71 Aligned_cols=45 Identities=22% Similarity=0.477 Sum_probs=28.6
Q ss_pred CCccccccccccccC-ceec--CCCCcchHHhHHHHhh---cCCCcccccc
Q psy18179 14 PDSVLCLVCQGILIK-PIKL--PCNHHVCLECLQRICD---NSNLSCPMCR 58 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~-p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr 58 (108)
..+-.|.||.+.-.. .... .|+..|...|+...+. .....||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456679999775432 2222 6999999999876543 2345566654
No 143
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.68 E-value=0.51 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.489 Sum_probs=33.5
Q ss_pred Ccccccccccccc---Cceec--CCCCcchHHhHHHHhh-------cCCCcccccccccc
Q psy18179 15 DSVLCLVCQGILI---KPIKL--PCNHHVCLECLQRICD-------NSNLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~---~p~~l--~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~ 62 (108)
.+..|.||...-. +.+.+ .|...|+..|+..-+. .+...|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4678999997643 34444 6999999999875432 34577999976543
No 144
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=67.52 E-value=1.2 Score=28.12 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=30.3
Q ss_pred CccccccccccccCceec--CCCCcchHHhHHHHhh---cCCCccccccccc
Q psy18179 15 DSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 61 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 61 (108)
.+-.|.+|.+--. +.+ .|...|+..|+...+. .+...||.|+...
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4456999985421 222 6888999999865443 3457799998754
No 145
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.66 E-value=4.5 Score=21.06 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCCCccccccccccccCc----eecCCCCcchHH
Q psy18179 12 LTPDSVLCLVCQGILIKP----IKLPCNHHVCLE 41 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~ 41 (108)
.......|..|...+.-+ ..-.||.+||..
T Consensus 11 ~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 11 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred CCccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 344567899999877755 344899999964
No 146
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=66.26 E-value=2.2 Score=20.50 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=19.0
Q ss_pred ccccccccccccCceecCCCCcchHHhHHHHhh-cCCCcccccccc
Q psy18179 16 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICD-NSNLSCPMCRKR 60 (108)
Q Consensus 16 ~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~ 60 (108)
...|.+|..++....--+ ..|-. -....||.|+..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~----------t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN----------VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTT----------CCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCC----------cchhhCCCCCcCcCCCCc
Confidence 457888887765322112 12222 123579999875
No 147
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=66.22 E-value=6.8 Score=27.42 Aligned_cols=46 Identities=22% Similarity=0.510 Sum_probs=31.2
Q ss_pred CCccccccccccccCcee---cCCCCcchHHhHHHHhh---------cCCCcccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIK---LPCNHHVCLECLQRICD---------NSNLSCPMCRKR 60 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~---l~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~ 60 (108)
..+..|.+|.+--. -+. -.|...||..||.+.+. .....|=+|...
T Consensus 91 G~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34667888876322 111 16899999999998874 245678888754
No 148
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=66.08 E-value=1.5 Score=22.82 Aligned_cols=48 Identities=19% Similarity=0.413 Sum_probs=29.0
Q ss_pred CCCCCccccccccccccCceec---CCCCcchHHhHHHHhh--cCCCccccccc
Q psy18179 11 TLTPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD--NSNLSCPMCRK 59 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~ 59 (108)
....+.+.| ||......-..+ .|..=|...|+.-... ...+.||.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445667888 998866543344 4666677777643221 13467888854
No 149
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.83 E-value=7.4 Score=19.64 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=20.5
Q ss_pred ccccccccccccCc-eecCCCCcchHHhHHHHhh
Q psy18179 16 SVLCLVCQGILIKP-IKLPCNHHVCLECLQRICD 48 (108)
Q Consensus 16 ~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~ 48 (108)
-|.|..|...|... ....=|..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 36677777766532 3334566777777776654
No 150
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=64.44 E-value=0.81 Score=31.03 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=31.6
Q ss_pred CCccccccccccccCceec----CCC--CcchHHhHHHHhhcCCCcccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL----PCN--HHVCLECLQRICDNSNLSCPMCRKR 60 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l----~Cg--H~fC~~Ci~~~~~~~~~~CP~Cr~~ 60 (108)
+..-.||+|.....-.+.. .=| +.+|..|-..|--.. ..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R-~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR-IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCT-TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC-cCCcCCCCC
Confidence 6778999999876544332 234 467888888886644 468888764
No 151
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.26 E-value=1.9 Score=24.53 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=16.8
Q ss_pred CCCCcchHHhHHHHhh---cCCCccccccc
Q psy18179 33 PCNHHVCLECLQRICD---NSNLSCPMCRK 59 (108)
Q Consensus 33 ~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 59 (108)
.|...|...|+..-+. .+...||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5777777888754333 23456887764
No 152
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.82 E-value=13 Score=19.66 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=26.8
Q ss_pred CCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
....-.|..|.+.+...+...-+..|...| +.|-.|+..+.
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 62 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLK 62 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTT
T ss_pred CCcCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCC
Confidence 344567999998777654445566666555 35777777665
No 153
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.48 E-value=13 Score=19.65 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=19.6
Q ss_pred Ccccccccccccc-CceecCCCCcchHH
Q psy18179 15 DSVLCLVCQGILI-KPIKLPCNHHVCLE 41 (108)
Q Consensus 15 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~ 41 (108)
..-.|..|...+. .+..-.||..||..
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechh
Confidence 3557999987533 35666899999963
No 154
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=62.44 E-value=6.7 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=17.1
Q ss_pred ccccccccccccCce-ecCCCCcchHHhH
Q psy18179 16 SVLCLVCQGILIKPI-KLPCNHHVCLECL 43 (108)
Q Consensus 16 ~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci 43 (108)
...|.-|.+.+.... ...-+..|...|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF 89 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL 89 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc
Confidence 467999998777553 3344555555554
No 155
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=60.97 E-value=6.6 Score=24.00 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=29.6
Q ss_pred CccccccccccccCceec----CCCCcchHHhHHHHhhc---------CCCcccccccc
Q psy18179 15 DSVLCLVCQGILIKPIKL----PCNHHVCLECLQRICDN---------SNLSCPMCRKR 60 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~ 60 (108)
.+..|.||.+-- -+.+ .|...||..||...+.. ....|=+|...
T Consensus 78 ~~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 456788887632 1221 58899999999987753 34568888654
No 156
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=60.92 E-value=5.7 Score=20.42 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=30.5
Q ss_pred CccccccccccccC-ceecCCCCcchH-HhHHHHhhcCCCccccccccc
Q psy18179 15 DSVLCLVCQGILIK-PIKLPCNHHVCL-ECLQRICDNSNLSCPMCRKRL 61 (108)
Q Consensus 15 ~~~~C~IC~~~~~~-p~~l~CgH~fC~-~Ci~~~~~~~~~~CP~Cr~~~ 61 (108)
+-|.|..|...|.. +....=|..||. .|..+.+. ..|..|....
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 45788999888775 444566788999 59877653 3477776543
No 157
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=60.60 E-value=2.6 Score=26.37 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=27.7
Q ss_pred cccccccccccCceecCCCCcchHHhHHHHhh---cCCCccccccccc
Q psy18179 17 VLCLVCQGILIKPIKLPCNHHVCLECLQRICD---NSNLSCPMCRKRL 61 (108)
Q Consensus 17 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 61 (108)
-.|.+|..--.--..-.|...|+..|+..-+. .+...||.|+...
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 35888875422111115778888888865443 3456799998653
No 158
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.50 E-value=6.6 Score=19.76 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=15.9
Q ss_pred cccccccccccCce-ecCCCCcchHHhHHHHh
Q psy18179 17 VLCLVCQGILIKPI-KLPCNHHVCLECLQRIC 47 (108)
Q Consensus 17 ~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~ 47 (108)
|.|..|...|..-. ...=|..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 55666655555322 22345556666655544
No 159
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.50 E-value=8.8 Score=20.46 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=11.7
Q ss_pred cccccccccccCceecCCCCcchHHh
Q psy18179 17 VLCLVCQGILIKPIKLPCNHHVCLEC 42 (108)
Q Consensus 17 ~~C~IC~~~~~~p~~l~CgH~fC~~C 42 (108)
-.|..|.+.+...+...-+..|+..|
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C 51 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE 51 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT
T ss_pred CCCccCCCEecceEEEECCccccccC
Confidence 34666665554433333333343333
No 160
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=60.33 E-value=13 Score=18.40 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=27.0
Q ss_pred CCCCCCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 10 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 10 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
.......+.|.+|...|.....|. .| +..........|+.|...+.
T Consensus 11 ~~~~~~~~~C~~C~k~f~~~~~l~-~H------~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 11 MTHSDKPYKCDRCQASFRYKGNLA-SH------KTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCCCCCSBCCTTSSCCBSCHHHHH-HH------HHHHCCCCSEECTTTCCEES
T ss_pred ccCCCCCeECCCCCceeCCHHHHH-HH------HHHcCCCCCEECCCCCchhC
Confidence 344556789999998887643321 01 00111123467999998876
No 161
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.15 E-value=9.1 Score=19.17 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=18.3
Q ss_pred ccccccccccccC-ceecCCCCcchHHhHHHHh
Q psy18179 16 SVLCLVCQGILIK-PIKLPCNHHVCLECLQRIC 47 (108)
Q Consensus 16 ~~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~ 47 (108)
-|.|..|...|.. +....=+..||..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 3666677666543 2233446667777766544
No 162
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=59.11 E-value=14 Score=20.06 Aligned_cols=29 Identities=24% Similarity=0.671 Sum_probs=22.2
Q ss_pred CCCcccccc--ccccccCceecC-CCCcchHH
Q psy18179 13 TPDSVLCLV--CQGILIKPIKLP-CNHHVCLE 41 (108)
Q Consensus 13 ~~~~~~C~I--C~~~~~~p~~l~-CgH~fC~~ 41 (108)
......|.. |...-..|+.-. |+..||..
T Consensus 22 ~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp CSCCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 344578988 998766787776 99999963
No 163
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.93 E-value=11 Score=18.78 Aligned_cols=32 Identities=16% Similarity=0.534 Sum_probs=18.3
Q ss_pred ccccccccccccCc-eecCCCCcchHHhHHHHh
Q psy18179 16 SVLCLVCQGILIKP-IKLPCNHHVCLECLQRIC 47 (108)
Q Consensus 16 ~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~ 47 (108)
-|.|..|...|... ....=|..||..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 35666676666532 223446667777766554
No 164
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.60 E-value=2.3 Score=22.13 Aligned_cols=42 Identities=26% Similarity=0.612 Sum_probs=25.8
Q ss_pred ccccccccccCceec---CCCCcchHHhHHHHhh---cC-CCccccccc
Q psy18179 18 LCLVCQGILIKPIKL---PCNHHVCLECLQRICD---NS-NLSCPMCRK 59 (108)
Q Consensus 18 ~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~---~~-~~~CP~Cr~ 59 (108)
.|.||...-..-..| .|...|...|+..-+. .+ ...||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455777532222222 6888999999874433 33 567998864
No 165
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.90 E-value=5 Score=20.62 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=13.9
Q ss_pred ccccccccccc--CceecCCCCcchHHhHHHH
Q psy18179 17 VLCLVCQGILI--KPIKLPCNHHVCLECLQRI 46 (108)
Q Consensus 17 ~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~~ 46 (108)
|.|..|...|. ......=|..||..|....
T Consensus 32 F~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 55555555554 1222233445555555443
No 166
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.83 E-value=15 Score=19.26 Aligned_cols=50 Identities=16% Similarity=0.376 Sum_probs=31.7
Q ss_pred CCCCCcccccccccccc-Cceec---CCCCcchHHhHHHHhh----cCCCccccccccc
Q psy18179 11 TLTPDSVLCLVCQGILI-KPIKL---PCNHHVCLECLQRICD----NSNLSCPMCRKRL 61 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~~~-~p~~l---~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~ 61 (108)
.+....+.| ||..... .-..+ .|..=|+..|+.-... ...+.||.|+...
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 445566778 8988763 22223 5777788888843221 2457899998754
No 167
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=55.70 E-value=21 Score=18.85 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=20.7
Q ss_pred CCCccccccccccccC-ceecCCCCcchHH
Q psy18179 13 TPDSVLCLVCQGILIK-PIKLPCNHHVCLE 41 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~-p~~l~CgH~fC~~ 41 (108)
....-.|..|...+.- +..-.||.+||..
T Consensus 22 k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred cccCccchhhcCcccccceEeccCCEeccc
Confidence 3345789999866443 5566899999974
No 168
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=55.46 E-value=12 Score=18.42 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=24.1
Q ss_pred CccccccccccccCceecCCCCcchHHhHHHHh----hcCCCcccccccccch
Q psy18179 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC----DNSNLSCPMCRKRLSI 63 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~----~~~~~~CP~Cr~~~~~ 63 (108)
..+.|.+|...|..... |..-. ......|+.|.+.+..
T Consensus 3 Kpy~C~~C~k~F~~~~~-----------L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASG-----------LSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHH-----------HHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHH-----------HHHHHHHhCCCcCeECCCCCCCcCC
Confidence 45778888887776432 22221 2345789999998873
No 169
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.34 E-value=14 Score=19.01 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=13.8
Q ss_pred ccccccccccc--Cceec-CCCCcchHHhHHHHh
Q psy18179 17 VLCLVCQGILI--KPIKL-PCNHHVCLECLQRIC 47 (108)
Q Consensus 17 ~~C~IC~~~~~--~p~~l-~CgH~fC~~Ci~~~~ 47 (108)
|.|..|...|. ....+ .=|..||..|..+.+
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 44555555443 22222 334455555554433
No 170
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=55.03 E-value=21 Score=18.67 Aligned_cols=32 Identities=28% Similarity=0.662 Sum_probs=23.8
Q ss_pred CCccccccccccc-cCce--ecCCCCcchHHhHHH
Q psy18179 14 PDSVLCLVCQGIL-IKPI--KLPCNHHVCLECLQR 45 (108)
Q Consensus 14 ~~~~~C~IC~~~~-~~p~--~l~CgH~fC~~Ci~~ 45 (108)
..++.|-+|.+.- ..++ .+.|.-+||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3478899998643 3333 358999999999986
No 171
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=54.89 E-value=22 Score=18.83 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCCCccccccccccccCceecCCCCcchHHhHHHHhh----cCCCcccccccccch
Q psy18179 12 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD----NSNLSCPMCRKRLSI 63 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~ 63 (108)
.......|++|...|.....| ..-+. ...+.|+.|.+.+..
T Consensus 24 ~~~~~h~C~~Cgk~F~~~~~L-----------~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 24 ASAECHLCPVCGESFASKGAQ-----------ERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CCCTTEECTTSCCEESSHHHH-----------HHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCCCEECCCCCCCcCcHHHH-----------hhhhhhccCCCccCCCCCCCEeCC
Confidence 344567899998888764322 22222 234789999998863
No 172
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.62 E-value=20 Score=18.54 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=23.2
Q ss_pred CccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
....|+-|.+.+.......-|..|...| +.|..|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccC
Confidence 3457888887766544444455554444 35777766665
No 173
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.04 E-value=7.3 Score=19.71 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=16.0
Q ss_pred ccccccccccccCc-eecCCCCcchHHhHHH
Q psy18179 16 SVLCLVCQGILIKP-IKLPCNHHVCLECLQR 45 (108)
Q Consensus 16 ~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~ 45 (108)
-|.|..|...|... ....=|..||..|..+
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp TCBCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred cCEeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 35666666655432 2224556666666544
No 174
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.81 E-value=21 Score=18.20 Aligned_cols=27 Identities=15% Similarity=0.463 Sum_probs=20.2
Q ss_pred Ccccccc--ccccccCceecC-CCCcchHH
Q psy18179 15 DSVLCLV--CQGILIKPIKLP-CNHHVCLE 41 (108)
Q Consensus 15 ~~~~C~I--C~~~~~~p~~l~-CgH~fC~~ 41 (108)
..-.|.. |...-..|+.-. |+..||..
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK 40 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc
Confidence 4567888 987755677666 99999963
No 175
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=53.43 E-value=14 Score=20.60 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.2
Q ss_pred CCcccccccccch
Q psy18179 51 NLSCPMCRKRLSI 63 (108)
Q Consensus 51 ~~~CP~Cr~~~~~ 63 (108)
+..||+|+..+..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4569999998873
No 176
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=52.94 E-value=2.3 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.700 Sum_probs=18.2
Q ss_pred CCCCcchHHhHHHHhh---cCC-Cccccccc
Q psy18179 33 PCNHHVCLECLQRICD---NSN-LSCPMCRK 59 (108)
Q Consensus 33 ~CgH~fC~~Ci~~~~~---~~~-~~CP~Cr~ 59 (108)
.|...|...|+..-+. .+. ..||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 6888899999875443 233 56888864
No 177
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.82 E-value=2.6 Score=22.42 Aligned_cols=42 Identities=31% Similarity=0.577 Sum_probs=26.0
Q ss_pred ccccccccccC-ceec--CCCCcchHHhHHHHhh---cC-CCccccccc
Q psy18179 18 LCLVCQGILIK-PIKL--PCNHHVCLECLQRICD---NS-NLSCPMCRK 59 (108)
Q Consensus 18 ~C~IC~~~~~~-p~~l--~CgH~fC~~Ci~~~~~---~~-~~~CP~Cr~ 59 (108)
.|.||...-.. ...+ .|...|+..|+..-+. .+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 56778764222 2222 6888899999874333 33 456888854
No 178
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=52.63 E-value=8.2 Score=19.13 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=11.4
Q ss_pred cccccccccccC-ceecCCCCcchHHhHH
Q psy18179 17 VLCLVCQGILIK-PIKLPCNHHVCLECLQ 44 (108)
Q Consensus 17 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~ 44 (108)
|.|..|...+.. .....=|..||..|..
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 60 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYN 60 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHH
Confidence 444444444432 1122334444544443
No 179
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.36 E-value=16 Score=20.36 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=26.8
Q ss_pred CccccccccccccC---ceecCCCCcchHHhHHHHhhc
Q psy18179 15 DSVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDN 49 (108)
Q Consensus 15 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~ 49 (108)
+-|.|..|...|.+ .....=|..||..|..+.+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 45889999998874 444456889999999887764
No 180
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.55 E-value=2.7 Score=21.12 Aligned_cols=44 Identities=16% Similarity=0.574 Sum_probs=26.7
Q ss_pred CCccccccccccccCceec---C--CC-CcchHHhHHHHhh-cCCCccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL---P--CN-HHVCLECLQRICD-NSNLSCPMCRK 59 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l---~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~ 59 (108)
.+...| ||.+..... .+ . |. .-|+..|+.-... .+...||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g~-mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGE-MIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCC-eeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 355677 898864432 33 4 65 5788889862211 23567998864
No 181
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.42 E-value=10 Score=19.09 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=16.5
Q ss_pred cccccccccccC-ceecCCCCcchHHhHHHHh
Q psy18179 17 VLCLVCQGILIK-PIKLPCNHHVCLECLQRIC 47 (108)
Q Consensus 17 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~ 47 (108)
|.|..|...|.. +....=|..||..|..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 566666665553 2223345566666665443
No 182
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=51.36 E-value=3.6 Score=25.03 Aligned_cols=48 Identities=15% Similarity=0.454 Sum_probs=30.3
Q ss_pred CCCccccccccccccCc-eec---CCCCcchHHhHHHHhh----cCCCccccccccc
Q psy18179 13 TPDSVLCLVCQGILIKP-IKL---PCNHHVCLECLQRICD----NSNLSCPMCRKRL 61 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p-~~l---~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~ 61 (108)
..+...| +|.....+. ..+ .|..-|+..|+.-... .....||.|+..-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3456789 998865321 122 5888899999853211 3457899998654
No 183
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=50.56 E-value=6.4 Score=22.39 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred ccccccccccccCceecCCCCcchHH
Q psy18179 16 SVLCLVCQGILIKPIKLPCNHHVCLE 41 (108)
Q Consensus 16 ~~~C~IC~~~~~~p~~l~CgH~fC~~ 41 (108)
...|..|...-..-+-|.|||.+|.+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 45699998765555678999999953
No 184
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=50.26 E-value=12 Score=15.48 Aligned_cols=11 Identities=27% Similarity=1.171 Sum_probs=8.1
Q ss_pred Ccccccccccc
Q psy18179 52 LSCPMCRKRLS 62 (108)
Q Consensus 52 ~~CP~Cr~~~~ 62 (108)
..||+|.+.++
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 35898887766
No 185
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.92 E-value=4 Score=26.42 Aligned_cols=42 Identities=24% Similarity=0.576 Sum_probs=24.0
Q ss_pred ccccccccccC-ceec--CCCCcchHHhHHHHhh---cC-CCccccccc
Q psy18179 18 LCLVCQGILIK-PIKL--PCNHHVCLECLQRICD---NS-NLSCPMCRK 59 (108)
Q Consensus 18 ~C~IC~~~~~~-p~~l--~CgH~fC~~Ci~~~~~---~~-~~~CP~Cr~ 59 (108)
.|.+|...-.. ...+ .|...|+..|+..-+. .+ ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57777753221 1222 6888899999975443 33 467999965
No 186
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.16 E-value=9.3 Score=19.99 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=8.6
Q ss_pred Ccccccccccccc
Q psy18179 15 DSVLCLVCQGILI 27 (108)
Q Consensus 15 ~~~~C~IC~~~~~ 27 (108)
....|.-|.+.+.
T Consensus 14 ~~~~C~~C~~~I~ 26 (80)
T 2dj7_A 14 GPSHCAGCKEEIK 26 (80)
T ss_dssp SCSCCTTTCCCCS
T ss_pred CCCCCcCcCCeeC
Confidence 4556877877654
No 187
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=48.10 E-value=30 Score=18.29 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCCcccccc--ccccccCceecC-CCCcchH
Q psy18179 12 LTPDSVLCLV--CQGILIKPIKLP-CNHHVCL 40 (108)
Q Consensus 12 ~~~~~~~C~I--C~~~~~~p~~l~-CgH~fC~ 40 (108)
.....-.|.. |.+.-.-|..-. |+.+||.
T Consensus 10 ~~~~g~~Cs~~~C~~~dflpf~C~~C~~~FC~ 41 (75)
T 1wys_A 10 ELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCL 41 (75)
T ss_dssp CCCCCCCCSCTTTCCCSCCCEECTTTCCEECS
T ss_pred ccccCCCcCcccCCCccceeeECcccCcCcCc
Confidence 3344568887 988766788776 9999996
No 188
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.94 E-value=19 Score=18.41 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=13.8
Q ss_pred cccccccccccCc-eecCCCCcchHHhHHHH
Q psy18179 17 VLCLVCQGILIKP-IKLPCNHHVCLECLQRI 46 (108)
Q Consensus 17 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~ 46 (108)
|.|..|...|... ....=|..||..|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 4555555554431 22234455555555443
No 189
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.68 E-value=12 Score=19.65 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=29.9
Q ss_pred CCccccccccccccCceec-----CCCCcchHHhHHHHhhc--------CCCccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL-----PCNHHVCLECLQRICDN--------SNLSCPMCRKRL 61 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l-----~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~ 61 (108)
...+.| ||......-..+ .|..=|+..|+.-.... ..+.||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 356788 899874433333 47677888898532221 257799997643
No 190
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=47.47 E-value=4.8 Score=19.47 Aligned_cols=44 Identities=23% Similarity=0.513 Sum_probs=23.1
Q ss_pred CccccccccccccCceec---CCCCcchHHhHHHHhh--cCCCccccccc
Q psy18179 15 DSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD--NSNLSCPMCRK 59 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~ 59 (108)
+.+.| ||......-..+ .|..=|...|+.-... .....||.|+.
T Consensus 3 d~~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TCBCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred cCeEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 44555 676654432333 4665666666643221 23466887754
No 191
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.33 E-value=16 Score=19.41 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=13.3
Q ss_pred cccccccccccCc-eecCCCCcchHHhHHHHh
Q psy18179 17 VLCLVCQGILIKP-IKLPCNHHVCLECLQRIC 47 (108)
Q Consensus 17 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~ 47 (108)
|.|..|...|..- ....=|..||..|..+.+
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 4444454444421 222334455555554433
No 192
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.28 E-value=15 Score=17.82 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=23.3
Q ss_pred CCccccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
...+.|.+|...|.....|.= .....|+.|...+.
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~ 50 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSC 50 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCS
T ss_pred CCCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhc
Confidence 456899999988886655422 23456777776655
No 193
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.66 E-value=3.4 Score=20.77 Aligned_cols=44 Identities=16% Similarity=0.549 Sum_probs=26.0
Q ss_pred CccccccccccccCceec--C--CC-CcchHHhHHHHhh-cCCCccccccc
Q psy18179 15 DSVLCLVCQGILIKPIKL--P--CN-HHVCLECLQRICD-NSNLSCPMCRK 59 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l--~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~ 59 (108)
+...| ||.+........ . |. .-|...|+.-... .+...||.|..
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 45667 898864433222 3 55 5688888862111 24567998854
No 194
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.56 E-value=16 Score=20.71 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=26.3
Q ss_pred CCcccccccccccc--CceecCCCCcchHHhHHHHhh
Q psy18179 14 PDSVLCLVCQGILI--KPIKLPCNHHVCLECLQRICD 48 (108)
Q Consensus 14 ~~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~~~~ 48 (108)
.+-|.|..|...|. ......=|..||..|..+.+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 34588899998884 345556688999999988765
No 195
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.91 E-value=22 Score=18.16 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=14.1
Q ss_pred cccccccccccC-ceecCCCCcchHHhHHHH
Q psy18179 17 VLCLVCQGILIK-PIKLPCNHHVCLECLQRI 46 (108)
Q Consensus 17 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~ 46 (108)
|.|..|...|.. .....=|..||..|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 455555554432 222334455555555443
No 196
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=45.44 E-value=4.6 Score=22.24 Aligned_cols=46 Identities=15% Similarity=0.450 Sum_probs=26.8
Q ss_pred CCCccccccccccccCceec--CCC---CcchHHhHHHHhh-cCCCcccc-ccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKL--PCN---HHVCLECLQRICD-NSNLSCPM-CRK 59 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l--~Cg---H~fC~~Ci~~~~~-~~~~~CP~-Cr~ 59 (108)
..+...| ||........+. .|. .-|+..|+.-... .+...||. |+.
T Consensus 23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 3456778 999854443222 333 5688888752211 23577999 874
No 197
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=45.36 E-value=4.9 Score=25.96 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=16.3
Q ss_pred CCCcccCCCCCCCCCccccccccccccCceec-CCCCcchHHh
Q psy18179 1 MDNEDCNSNNTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLEC 42 (108)
Q Consensus 1 m~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~C 42 (108)
|||.+.+. ........||+|... +...+ .=|+.+|..|
T Consensus 1 ~~~~~~~~--~~~~~~~~CP~Cg~~--d~~~~~~dg~~~C~~C 39 (255)
T 1nui_A 1 MDNSHDSD--SVFLYHIPCDNCGSS--DGNSLFSDGHTFCYVC 39 (255)
T ss_dssp -----------CEEEEECCSSSCCS--SCEEEETTSCEEETTT
T ss_pred CCcccccc--cceecCCcCCCCCCC--CCceEeCCCCeecccC
Confidence 66665542 334447899999773 11111 1256667666
No 198
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.02 E-value=14 Score=18.52 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=16.4
Q ss_pred cccccccccccCc-eecCCCCcchHHhHHHHh
Q psy18179 17 VLCLVCQGILIKP-IKLPCNHHVCLECLQRIC 47 (108)
Q Consensus 17 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~ 47 (108)
|.|..|...|... ....=|..||..|..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhHHh
Confidence 5566666655532 222345566666665543
No 199
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=44.81 E-value=3.2 Score=21.35 Aligned_cols=46 Identities=20% Similarity=0.542 Sum_probs=26.1
Q ss_pred CCCccccccccccccCceecC-----CCCcchHHhHHHHhh---c----CCCccccccc
Q psy18179 13 TPDSVLCLVCQGILIKPIKLP-----CNHHVCLECLQRICD---N----SNLSCPMCRK 59 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l~-----CgH~fC~~Ci~~~~~---~----~~~~CP~Cr~ 59 (108)
.+..+.| ||......-..+. |..=|+..|+.-... . ..+.||.||.
T Consensus 7 ~e~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 7 PEAKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SSCEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 4556788 8977655444443 554566777632111 0 1367998864
No 200
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.95 E-value=17 Score=18.70 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.7
Q ss_pred cccccccccc
Q psy18179 18 LCLVCQGILI 27 (108)
Q Consensus 18 ~C~IC~~~~~ 27 (108)
.|..|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 1x63_A 17 KCKGCFKAIV 26 (82)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCcccc
Confidence 4666665554
No 201
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=43.59 E-value=36 Score=18.32 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCCCCCCcccccccccc-ccCceec---CCCCcchHHhHHH
Q psy18179 8 SNNTLTPDSVLCLVCQGI-LIKPIKL---PCNHHVCLECLQR 45 (108)
Q Consensus 8 ~~~~~~~~~~~C~IC~~~-~~~p~~l---~CgH~fC~~Ci~~ 45 (108)
-+++.....+.|.||.+. .--.+.- .|.-.|.-.|..+
T Consensus 9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHH
Confidence 456666778999999764 2222322 5888999999765
No 202
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=43.36 E-value=20 Score=21.97 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=23.7
Q ss_pred cccccccccccC-ceecCCCCcchHHhHHHHhhcCCCcccccccc
Q psy18179 17 VLCLVCQGILIK-PIKLPCNHHVCLECLQRICDNSNLSCPMCRKR 60 (108)
Q Consensus 17 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 60 (108)
|.|..|...|.. .....=|..||..|..+.+. ..|..|...
T Consensus 143 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~---~kc~~C~~~ 184 (192)
T 1b8t_A 143 FRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG---PKGFGFGQG 184 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC---CCCCCCCCC
T ss_pred CCccccCCCCCCCcccccCCEEeCHHHHHHhcC---CcCCCCCCc
Confidence 556666655542 22334566778888776653 236666654
No 203
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=42.62 E-value=4.5 Score=20.51 Aligned_cols=44 Identities=18% Similarity=0.590 Sum_probs=26.7
Q ss_pred CCccccccccccccCceec---C--CC-CcchHHhHHHHhh-cCCCccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL---P--CN-HHVCLECLQRICD-NSNLSCPMCRK 59 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l---~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~ 59 (108)
.+...| ||.+.... ..+ . |. .-|+..|+.-... .+...||.|+.
T Consensus 9 ~e~~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 345677 99886433 344 3 54 6788888863211 23567998864
No 204
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=41.59 E-value=20 Score=20.94 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=18.4
Q ss_pred CCccccccccccccCceecCCCCcchHH
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLE 41 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~ 41 (108)
.+...|..|...-..=+-|.|||..|.+
T Consensus 32 ~~~~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 32 PCGWKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp CCBCCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CCCCcCccccCcCceEEeccCCccccCc
Confidence 3456799997653323456899988843
No 205
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=40.45 E-value=1.8 Score=21.29 Aligned_cols=38 Identities=18% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCccccccccccccCceecCCCCcchHHhHHHHhh--cCCCcccccccccch
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD--NSNLSCPMCRKRLSI 63 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~ 63 (108)
+..+.|++|...|.....+. ... ...+.|+.|...+..
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~------------~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQ------------LFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHH------------HEETTTTEEBCSSSCCBCEE
T ss_pred CCCccCCCCCchhccHHHhH------------hhcCCCCCEECCCCCCcccc
Confidence 34577888777665432221 111 234679999988764
No 206
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.25 E-value=2.3 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=14.4
Q ss_pred CCCCcchHHhHHHHhh---cCCCcccccccc
Q psy18179 33 PCNHHVCLECLQRICD---NSNLSCPMCRKR 60 (108)
Q Consensus 33 ~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 60 (108)
.|...|...|+..-+. .+...||.|...
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccch
Confidence 4666666666653222 223456666443
No 207
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.23 E-value=28 Score=17.89 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=13.5
Q ss_pred cccccccccccCcee-cC-CCCcchHHhHHHH
Q psy18179 17 VLCLVCQGILIKPIK-LP-CNHHVCLECLQRI 46 (108)
Q Consensus 17 ~~C~IC~~~~~~p~~-l~-CgH~fC~~Ci~~~ 46 (108)
|.|..|...|..... .. =|..||..|..+.
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 455555554442211 11 2455555555443
No 208
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=38.98 E-value=9.8 Score=23.83 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=21.4
Q ss_pred CCccccccccccccCceecCCCCcchHHhHH
Q psy18179 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQ 44 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~ 44 (108)
.....|++|.+.+.+. |-..|..|..
T Consensus 161 ~~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC-----CCcCCccccC
Confidence 4678899999988776 8889999864
No 209
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.92 E-value=23 Score=17.88 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCCcccccccccccc--CceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 12 LTPDSVLCLVCQGILI--KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
.....-.|+-|.+.+. +.+...-|..|...| +.|-.|+..+.
T Consensus 7 ~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 50 (77)
T 1g47_A 7 NALASATCERCKGGFAPAEKIVNSNGELYHEQC---------FVCAQCFQQFP 50 (77)
T ss_dssp SCCCCCBCSSSCCBCCSTTTCEEETTEEECTTT---------CCCTTTCCCCG
T ss_pred cCCCCCCchhcCCccCCCceEEEeCccEecccc---------CeECCCCCCCC
Confidence 3344567888888764 333333444444444 34666666654
No 210
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.85 E-value=28 Score=17.64 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred cccccccccccc-CceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 16 SVLCLVCQGILI-KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 16 ~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
.-.|+.|.+.+. ......-+..|...| +.|..|+..+.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC---------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT---------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC---------CCCCCCCCccC
Confidence 456888877665 333333444444444 34667766655
No 211
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=45.01 E-value=6.5 Score=14.75 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=4.8
Q ss_pred cccccccccc
Q psy18179 18 LCLVCQGILI 27 (108)
Q Consensus 18 ~C~IC~~~~~ 27 (108)
.|.+|...|.
T Consensus 4 ~C~~C~k~f~ 13 (26)
T 2lvu_A 4 VCERCGKRFV 13 (26)
Confidence 4555544444
No 212
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.61 E-value=28 Score=15.36 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=12.9
Q ss_pred CCCCccccccccccccCc
Q psy18179 12 LTPDSVLCLVCQGILIKP 29 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p 29 (108)
.....+.|.+|...|...
T Consensus 8 ~~~k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 8 RTRKQVACEICGKIFRDV 25 (48)
T ss_dssp CCCCSEEETTTTEEESSH
T ss_pred CCCcCeeCCCCCcccCCH
Confidence 344568898888887754
No 213
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.10 E-value=11 Score=19.59 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=16.2
Q ss_pred cccccccccccCc-eecCCCCcchHHhHHHHh
Q psy18179 17 VLCLVCQGILIKP-IKLPCNHHVCLECLQRIC 47 (108)
Q Consensus 17 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~ 47 (108)
|.|..|...|..- ....=+..||..|..+.+
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 66 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY 66 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHHHC
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHHHh
Confidence 5566666555432 222345566666665543
No 214
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.04 E-value=13 Score=13.98 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=3.8
Q ss_pred ccccccccc
Q psy18179 18 LCLVCQGIL 26 (108)
Q Consensus 18 ~C~IC~~~~ 26 (108)
.|.+|...|
T Consensus 4 ~C~~C~~~f 12 (29)
T 1ard_A 4 VCEVCTRAF 12 (29)
T ss_dssp BCTTTCCBC
T ss_pred ECCCCCccc
Confidence 344444433
No 215
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=37.78 E-value=13 Score=18.36 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=5.5
Q ss_pred ccccccccccc
Q psy18179 17 VLCLVCQGILI 27 (108)
Q Consensus 17 ~~C~IC~~~~~ 27 (108)
|.|..|...|.
T Consensus 33 F~C~~C~~~L~ 43 (65)
T 2iyb_E 33 FLCSCCSKCLI 43 (65)
T ss_dssp SBCTTTCCBCT
T ss_pred EECCCCCCcCC
Confidence 45555554443
No 216
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.60 E-value=14 Score=15.03 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=7.1
Q ss_pred ccccccccccccC
Q psy18179 16 SVLCLVCQGILIK 28 (108)
Q Consensus 16 ~~~C~IC~~~~~~ 28 (108)
.+.|.+|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4556666555543
No 217
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.58 E-value=29 Score=18.44 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=27.8
Q ss_pred CCCccccccccccccC----cee-cCCCCcchHHhHHHHhhcCCCccccccc
Q psy18179 13 TPDSVLCLVCQGILIK----PIK-LPCNHHVCLECLQRICDNSNLSCPMCRK 59 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~----p~~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 59 (108)
...+-.|..|.+.|-- ... -.|.|..|..|-..... ....|-+|-+
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~-~~W~C~VC~k 72 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESN-GTWRCKVCSG 72 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECST-TCEEEHHHHS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccccccCCC-CCEEEeeCch
Confidence 4567789999886652 222 26899988888433211 3345666543
No 218
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=43.05 E-value=7.3 Score=15.01 Aligned_cols=7 Identities=29% Similarity=1.179 Sum_probs=2.9
Q ss_pred ccccccc
Q psy18179 54 CPMCRKR 60 (108)
Q Consensus 54 CP~Cr~~ 60 (108)
|+.|...
T Consensus 6 C~~C~k~ 12 (30)
T 2lvr_A 6 CIHCQRQ 12 (30)
Confidence 4444433
No 219
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=36.43 E-value=48 Score=17.36 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=13.0
Q ss_pred CCCCccccccccccccC
Q psy18179 12 LTPDSVLCLVCQGILIK 28 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~ 28 (108)
.....+.|.+|...|..
T Consensus 13 ~~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCCBCSSSCCBCSS
T ss_pred CCCcCeECCCCCCccCC
Confidence 44557899999988864
No 220
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=36.10 E-value=19 Score=18.31 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=6.7
Q ss_pred ccccccccccc
Q psy18179 17 VLCLVCQGILI 27 (108)
Q Consensus 17 ~~C~IC~~~~~ 27 (108)
-.|+-|.+.+.
T Consensus 16 ~~C~~C~~~I~ 26 (77)
T 2egq_A 16 KKCAGCKNPIT 26 (77)
T ss_dssp CCCSSSCCCCC
T ss_pred ccCcccCCccc
Confidence 35666766555
No 221
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.27 E-value=7.6 Score=14.93 Aligned_cols=10 Identities=20% Similarity=0.776 Sum_probs=4.8
Q ss_pred cccccccccc
Q psy18179 18 LCLVCQGILI 27 (108)
Q Consensus 18 ~C~IC~~~~~ 27 (108)
.|.+|...|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2lvt_A 4 QCVMCGKAFT 13 (29)
Confidence 4555544444
No 222
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=35.93 E-value=7.3 Score=14.60 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=4.7
Q ss_pred cccccccccc
Q psy18179 18 LCLVCQGILI 27 (108)
Q Consensus 18 ~C~IC~~~~~ 27 (108)
.|.+|...|.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 4555544443
No 223
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.88 E-value=8.8 Score=14.48 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=4.4
Q ss_pred cccccccccc
Q psy18179 18 LCLVCQGILI 27 (108)
Q Consensus 18 ~C~IC~~~~~ 27 (108)
.|++|...|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 3444444433
No 224
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.66 E-value=11 Score=19.48 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=28.7
Q ss_pred CCCCccccccccccccCc-eec---CCCCcchHHhHHHHhh---cCCCcccccccc
Q psy18179 12 LTPDSVLCLVCQGILIKP-IKL---PCNHHVCLECLQRICD---NSNLSCPMCRKR 60 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p-~~l---~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 60 (108)
.....+.| ||.....+- ..+ .|..=|...|+.-... ...+.||.|+..
T Consensus 12 ~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 12 VDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 35567889 798865432 233 4666667777643221 234779998754
No 225
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=35.04 E-value=19 Score=17.81 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=8.1
Q ss_pred cccccccccccc
Q psy18179 16 SVLCLVCQGILI 27 (108)
Q Consensus 16 ~~~C~IC~~~~~ 27 (108)
...|..|.+.+.
T Consensus 11 ~~~C~~C~~~i~ 22 (72)
T 3f6q_B 11 SATCERCKGGFA 22 (72)
T ss_dssp TCBCTTTCCBCC
T ss_pred CccchhcCcccc
Confidence 346777877666
No 226
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=34.89 E-value=26 Score=19.81 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=26.4
Q ss_pred CCCCccccccccccccCceec---CCCCcchHHhHHHHhh---cCCCccccccccc
Q psy18179 12 LTPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD---NSNLSCPMCRKRL 61 (108)
Q Consensus 12 ~~~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 61 (108)
....+..|.+|.+. .+-+.- .|-..|...|+. +. .+...||.|.-.+
T Consensus 11 ~~~~~~~C~~C~~~-G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 11 KQMHEDYCFQCGDG-GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CCSSCSSCTTTCCC-SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred cCCCCCCCCcCCCC-CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 34556679999842 111111 266777777875 32 3345688665433
No 227
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.77 E-value=32 Score=16.50 Aligned_cols=9 Identities=33% Similarity=1.206 Sum_probs=4.2
Q ss_pred ccccccccc
Q psy18179 53 SCPMCRKRL 61 (108)
Q Consensus 53 ~CP~Cr~~~ 61 (108)
.||.|+-.+
T Consensus 25 rCpyCGyri 33 (48)
T 4ayb_P 25 RCPYCGYKI 33 (48)
T ss_dssp CCTTTCCSC
T ss_pred ccCccCcEE
Confidence 355554433
No 228
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=34.77 E-value=23 Score=19.54 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=17.9
Q ss_pred ccccccccccccC-ceecC--CCCcchHH
Q psy18179 16 SVLCLVCQGILIK-PIKLP--CNHHVCLE 41 (108)
Q Consensus 16 ~~~C~IC~~~~~~-p~~l~--CgH~fC~~ 41 (108)
...|..|...-.+ =+-|. |||.+|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4579999843333 35567 99999954
No 229
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=34.38 E-value=9.8 Score=15.71 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=9.1
Q ss_pred CccccccccccccC
Q psy18179 15 DSVLCLVCQGILIK 28 (108)
Q Consensus 15 ~~~~C~IC~~~~~~ 28 (108)
..+.|++|...|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 35677777766654
No 230
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.36 E-value=7.2 Score=14.93 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=4.8
Q ss_pred ccccccccccc
Q psy18179 17 VLCLVCQGILI 27 (108)
Q Consensus 17 ~~C~IC~~~~~ 27 (108)
+.|.+|...|.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 34444444443
No 231
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=34.00 E-value=25 Score=17.85 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=19.1
Q ss_pred CCCccccccccccccCc-eec----CCCCcchHHhHH
Q psy18179 13 TPDSVLCLVCQGILIKP-IKL----PCNHHVCLECLQ 44 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p-~~l----~CgH~fC~~Ci~ 44 (108)
......|++|...+.+- ..+ .|.--|...|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45667899999976532 222 466668888874
No 232
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.92 E-value=23 Score=17.98 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy18179 18 LCLVCQGILI 27 (108)
Q Consensus 18 ~C~IC~~~~~ 27 (108)
.|+.|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (76)
T 1x68_A 7 GCVACSKPIS 16 (76)
T ss_dssp CCTTTCCCCC
T ss_pred CCccCCCccc
Confidence 3555555444
No 233
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.71 E-value=7.7 Score=14.68 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=3.9
Q ss_pred ccccccccc
Q psy18179 18 LCLVCQGIL 26 (108)
Q Consensus 18 ~C~IC~~~~ 26 (108)
.|.+|...|
T Consensus 5 ~C~~C~k~f 13 (27)
T 2kvh_A 5 SCSLCPQRS 13 (27)
T ss_dssp ECSSSSCEE
T ss_pred cCCCcChhh
Confidence 444444433
No 234
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=33.48 E-value=17 Score=13.68 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=4.2
Q ss_pred cccccccccc
Q psy18179 18 LCLVCQGILI 27 (108)
Q Consensus 18 ~C~IC~~~~~ 27 (108)
.|.+|...|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1klr_A 4 QCQYCEFRSA 13 (30)
T ss_dssp CCSSSSCCCS
T ss_pred cCCCCCCccC
Confidence 3444444433
No 235
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.27 E-value=15 Score=13.78 Aligned_cols=10 Identities=60% Similarity=1.275 Sum_probs=5.2
Q ss_pred cccccccccc
Q psy18179 53 SCPMCRKRLS 62 (108)
Q Consensus 53 ~CP~Cr~~~~ 62 (108)
.|+.|.+.+.
T Consensus 5 ~C~~C~k~f~ 14 (28)
T 2kvf_A 5 SCSVCGKRFS 14 (28)
T ss_dssp ECSSSCCEES
T ss_pred cCCCCCcccC
Confidence 3555555544
No 236
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=32.92 E-value=17 Score=20.68 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=13.8
Q ss_pred CCCCcchHHhHHHHhhcCCC-ccccccccc
Q psy18179 33 PCNHHVCLECLQRICDNSNL-SCPMCRKRL 61 (108)
Q Consensus 33 ~CgH~fC~~Ci~~~~~~~~~-~CP~Cr~~~ 61 (108)
.|||.|=. ..... .||.|+...
T Consensus 78 ~CG~~~e~-------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 78 DCSHVFKP-------NALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSCEECS-------CCSTTCCCSSSSSCC
T ss_pred CCCCEEeC-------CCCCCCcCccccCCC
Confidence 57776543 12335 699998764
No 237
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.67 E-value=12 Score=15.27 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=7.1
Q ss_pred ccccccccccccC
Q psy18179 16 SVLCLVCQGILIK 28 (108)
Q Consensus 16 ~~~C~IC~~~~~~ 28 (108)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 4556666555543
No 238
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=31.78 E-value=12 Score=14.36 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=5.7
Q ss_pred ccccccccccc
Q psy18179 17 VLCLVCQGILI 27 (108)
Q Consensus 17 ~~C~IC~~~~~ 27 (108)
+.|.+|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 44555555544
No 239
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.78 E-value=21 Score=18.42 Aligned_cols=36 Identities=17% Similarity=0.551 Sum_probs=18.9
Q ss_pred ccccccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 18 ~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
.|+.|.+.+...+...-+..|+..| +.|-.|+..+.
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 52 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDC---------FVCAVCRLPFP 52 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTT---------SSCSSSCCCCC
T ss_pred cCccccCEeccceEEECCceeCccC---------CccccCCCCCC
Confidence 5777777655433333444444443 34666666554
No 240
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.54 E-value=6.7 Score=14.91 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=5.1
Q ss_pred ccccccccccc
Q psy18179 17 VLCLVCQGILI 27 (108)
Q Consensus 17 ~~C~IC~~~~~ 27 (108)
+.|.+|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 34555544443
No 241
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=31.30 E-value=8.7 Score=14.63 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=5.6
Q ss_pred ccccccccccc
Q psy18179 17 VLCLVCQGILI 27 (108)
Q Consensus 17 ~~C~IC~~~~~ 27 (108)
+.|++|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 34555555444
No 242
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=31.20 E-value=18 Score=22.72 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=7.3
Q ss_pred Cccccccccc
Q psy18179 52 LSCPMCRKRL 61 (108)
Q Consensus 52 ~~CP~Cr~~~ 61 (108)
..||.|+.+-
T Consensus 187 ~~CP~C~~~k 196 (202)
T 1yuz_A 187 EKCPICFRPK 196 (202)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCh
Confidence 4699998754
No 243
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=30.31 E-value=31 Score=16.96 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=11.4
Q ss_pred CCCcccccccccccc
Q psy18179 13 TPDSVLCLVCQGILI 27 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~ 27 (108)
..+-+.||+|...+.
T Consensus 7 lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 7 LLEILACPACHAPLE 21 (56)
T ss_dssp CTTSCCCSSSCSCEE
T ss_pred HHhheeCCCCCCcce
Confidence 456789999998654
No 244
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=30.03 E-value=19 Score=22.04 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=7.1
Q ss_pred Cccccccccc
Q psy18179 52 LSCPMCRKRL 61 (108)
Q Consensus 52 ~~CP~Cr~~~ 61 (108)
..||.|..+-
T Consensus 154 ~~CP~Cg~~~ 163 (170)
T 3pwf_A 154 EYCPVCGAPK 163 (170)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCH
Confidence 3699998654
No 245
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.82 E-value=16 Score=17.61 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=10.2
Q ss_pred CCCcccccccccc
Q psy18179 50 SNLSCPMCRKRLS 62 (108)
Q Consensus 50 ~~~~CP~Cr~~~~ 62 (108)
....||.|...+.
T Consensus 11 ~~~~CPrCn~~f~ 23 (49)
T 2e72_A 11 GRKICPRCNAQFR 23 (49)
T ss_dssp SCCCCTTTCCCCS
T ss_pred CceeCCccccccc
Confidence 3467999998876
No 246
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.60 E-value=39 Score=17.06 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=10.8
Q ss_pred CCCCcccccccccc
Q psy18179 12 LTPDSVLCLVCQGI 25 (108)
Q Consensus 12 ~~~~~~~C~IC~~~ 25 (108)
...+.-.|.||...
T Consensus 5 ~~~d~~~C~iC~KT 18 (62)
T 2a20_A 5 QKGDAPTCGICHKT 18 (62)
T ss_dssp CSSCCCCCSSSSCS
T ss_pred ccCCcchhhhhccc
Confidence 45667889999875
No 247
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.39 E-value=17 Score=15.94 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=11.9
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 10 EKPYECDVCRKAFSHH 25 (46)
T ss_dssp SSSCBCTTTCCBCSSS
T ss_pred CCCcCCCCcCchhCCH
Confidence 4468898888887764
No 248
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.22 E-value=18 Score=14.62 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=6.4
Q ss_pred cccccccccccc
Q psy18179 16 SVLCLVCQGILI 27 (108)
Q Consensus 16 ~~~C~IC~~~~~ 27 (108)
.+.|++|...|.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 355665555544
No 249
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=28.74 E-value=14 Score=19.17 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=9.3
Q ss_pred Ccccccccccc
Q psy18179 52 LSCPMCRKRLS 62 (108)
Q Consensus 52 ~~CP~Cr~~~~ 62 (108)
..||.|++.+.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 46999999886
No 250
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=28.65 E-value=5.1 Score=22.56 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=29.2
Q ss_pred ccccccccccccCc-eec----CCCCcchHHhHHHHhh---------cCCCcccccccccc
Q psy18179 16 SVLCLVCQGILIKP-IKL----PCNHHVCLECLQRICD---------NSNLSCPMCRKRLS 62 (108)
Q Consensus 16 ~~~C~IC~~~~~~p-~~l----~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~~~ 62 (108)
...|+||...+.+- ..+ .|..=|...|+.-... .....||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46799999876422 122 4666788888742210 13477999987544
No 251
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=28.63 E-value=21 Score=15.09 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=13.2
Q ss_pred ccccccccccCceec-CCCCcchHHh
Q psy18179 18 LCLVCQGILIKPIKL-PCNHHVCLEC 42 (108)
Q Consensus 18 ~C~IC~~~~~~p~~l-~CgH~fC~~C 42 (108)
.|+.|.......-.+ .=|..|.+.|
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred cCCccCCEEecceeEEECCeEecccC
Confidence 577777755433222 3455555555
No 252
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.49 E-value=14 Score=15.69 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=10.1
Q ss_pred CccccccccccccCc
Q psy18179 15 DSVLCLVCQGILIKP 29 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p 29 (108)
..+.|.+|...|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 9 KPYSCAECKETFSDN 23 (42)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeECCCCCCccCCH
Confidence 347788887776653
No 253
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.22 E-value=11 Score=15.20 Aligned_cols=13 Identities=15% Similarity=0.644 Sum_probs=7.6
Q ss_pred ccccccccccccC
Q psy18179 16 SVLCLVCQGILIK 28 (108)
Q Consensus 16 ~~~C~IC~~~~~~ 28 (108)
.+.|.+|...|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 4566666665553
No 254
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.56 E-value=15 Score=16.02 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=11.5
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|++|...|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 10 EKPYKCSDCGKSFTWK 25 (46)
T ss_dssp CCSCBCSSSCCBCSSH
T ss_pred CCCccCCccChhhCCH
Confidence 3457888888877754
No 255
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=27.31 E-value=17 Score=16.05 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.2
Q ss_pred CCCCcchHHhHHH
Q psy18179 33 PCNHHVCLECLQR 45 (108)
Q Consensus 33 ~CgH~fC~~Ci~~ 45 (108)
.|.|+.|..|-..
T Consensus 11 scehtmcgycqgp 23 (40)
T 1erd_A 11 SCEHTMCGYCQGP 23 (40)
T ss_dssp HTCGGGGGGSCHH
T ss_pred hccccccccccCC
Confidence 7999999887544
No 256
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=27.25 E-value=44 Score=18.69 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=17.9
Q ss_pred CccccccccccccCce----ecCCCCcchH
Q psy18179 15 DSVLCLVCQGILIKPI----KLPCNHHVCL 40 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~----~l~CgH~fC~ 40 (108)
....|..|...-...+ -|.|||.-|.
T Consensus 17 ~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~ 46 (102)
T 2ida_A 17 SALGCEECLKIGSPWVHLRICRTCGHVGCC 46 (102)
T ss_dssp SSSSCHHHHTTTCCCSCBEEESSSCCCCBC
T ss_pred CCCcCccccccCCcchheeeeeEcCCCccc
Confidence 4677888877644443 5689998774
No 257
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=27.13 E-value=23 Score=17.42 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=7.9
Q ss_pred CCCccccccccc
Q psy18179 13 TPDSVLCLVCQG 24 (108)
Q Consensus 13 ~~~~~~C~IC~~ 24 (108)
..+++.||+|..
T Consensus 33 lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 33 IPDDWVCPLCGV 44 (54)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCcCCCC
Confidence 345677888864
No 258
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.07 E-value=15 Score=15.66 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=10.0
Q ss_pred CccccccccccccCc
Q psy18179 15 DSVLCLVCQGILIKP 29 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p 29 (108)
..+.|.+|...|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2eos_A 10 KPYPCEICGTRFRHL 24 (42)
T ss_dssp CCBCCSSSCCCBSSH
T ss_pred CCEECCCCCCccCCH
Confidence 456787777776653
No 259
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=26.94 E-value=26 Score=18.59 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=8.1
Q ss_pred CCCCcccccccc
Q psy18179 12 LTPDSVLCLVCQ 23 (108)
Q Consensus 12 ~~~~~~~C~IC~ 23 (108)
.......|+||.
T Consensus 13 ~~~~tWVCpICs 24 (76)
T 2j9u_B 13 DVVSTWVCPICM 24 (76)
T ss_dssp --CEEEECTTTC
T ss_pred ccccceECcccc
Confidence 344578899998
No 260
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.76 E-value=15 Score=15.59 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=9.9
Q ss_pred CccccccccccccCc
Q psy18179 15 DSVLCLVCQGILIKP 29 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p 29 (108)
..+.|++|...|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQK 24 (42)
T ss_dssp CSBCCTTTTCCBSSH
T ss_pred CCeeCCCccchhCCH
Confidence 456777777766653
No 261
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.58 E-value=27 Score=16.98 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=8.3
Q ss_pred CCCccccccccc
Q psy18179 13 TPDSVLCLVCQG 24 (108)
Q Consensus 13 ~~~~~~C~IC~~ 24 (108)
..+++.||+|..
T Consensus 33 lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 33 LPDDWACPVCGA 44 (52)
T ss_dssp SCTTCCCSSSCC
T ss_pred CCCCCcCCCCCC
Confidence 356678888864
No 262
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=26.58 E-value=47 Score=16.68 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCCCCcccccccccc--ccCcee-cCCCCcchH-HhHHH
Q psy18179 11 TLTPDSVLCLVCQGI--LIKPIK-LPCNHHVCL-ECLQR 45 (108)
Q Consensus 11 ~~~~~~~~C~IC~~~--~~~p~~-l~CgH~fC~-~Ci~~ 45 (108)
+..+....|.||... ....-+ -.|+-.||. .|...
T Consensus 6 s~m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~ 44 (59)
T 1x4s_A 6 SGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRT 44 (59)
T ss_dssp SSCCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHH
T ss_pred CCCCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHH
Confidence 344456789999852 222222 259988884 67664
No 263
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.45 E-value=18 Score=13.54 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=6.0
Q ss_pred cccccccccch
Q psy18179 53 SCPMCRKRLSI 63 (108)
Q Consensus 53 ~CP~Cr~~~~~ 63 (108)
.|+.|...+..
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvg_A 5 RCPLCRAGCPS 15 (27)
T ss_dssp EETTTTEEESC
T ss_pred CCCCCCcccCC
Confidence 46666655543
No 264
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.40 E-value=30 Score=20.71 Aligned_cols=10 Identities=30% Similarity=1.009 Sum_probs=7.9
Q ss_pred cccccccccc
Q psy18179 53 SCPMCRKRLS 62 (108)
Q Consensus 53 ~CP~Cr~~~~ 62 (108)
.||.|+..+.
T Consensus 150 ~Cp~CG~~~~ 159 (165)
T 2lcq_A 150 VCPDCGSKVK 159 (165)
T ss_dssp BCTTTCCBEE
T ss_pred cCCCCCCcce
Confidence 5999988764
No 265
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.96 E-value=12 Score=15.26 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=9.0
Q ss_pred CccccccccccccC
Q psy18179 15 DSVLCLVCQGILIK 28 (108)
Q Consensus 15 ~~~~C~IC~~~~~~ 28 (108)
..+.|++|...|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 8 KPFKCSLCEYATRS 21 (36)
T ss_dssp CSEECSSSSCEESC
T ss_pred CCccCCCCCchhCC
Confidence 34677777766654
No 266
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=25.90 E-value=4.6 Score=16.31 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=5.5
Q ss_pred chHHhHHHHh
Q psy18179 38 VCLECLQRIC 47 (108)
Q Consensus 38 fC~~Ci~~~~ 47 (108)
||..|-..|+
T Consensus 7 fcetcskpwl 16 (26)
T 1loi_A 7 FCETCSKPWL 16 (26)
T ss_dssp HHHTSSCTTG
T ss_pred HHHhcCCchh
Confidence 5666655443
No 267
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.63 E-value=17 Score=15.87 Aligned_cols=16 Identities=13% Similarity=0.551 Sum_probs=11.2
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2emg_A 10 ENPFICSECGKVFTHK 25 (46)
T ss_dssp CCSCBCTTTCCBCSSH
T ss_pred CCCEECCccCcccCCH
Confidence 3457888888777754
No 268
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=25.53 E-value=22 Score=15.54 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=11.8
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 10 EKPFKCVECGKGFSRR 25 (46)
T ss_dssp CCSBCCSSSCCCBSST
T ss_pred CCCcccCccCcccCCH
Confidence 3458888888877754
No 269
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.25 E-value=16 Score=15.75 Aligned_cols=15 Identities=13% Similarity=0.552 Sum_probs=10.6
Q ss_pred CccccccccccccCc
Q psy18179 15 DSVLCLVCQGILIKP 29 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p 29 (108)
..+.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQR 25 (44)
T ss_dssp CSEECSSSSCEESSS
T ss_pred CCeECCCCCchhCCH
Confidence 457788888777654
No 270
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.21 E-value=26 Score=16.98 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=8.0
Q ss_pred CCCccccccccc
Q psy18179 13 TPDSVLCLVCQG 24 (108)
Q Consensus 13 ~~~~~~C~IC~~ 24 (108)
..+++.||+|..
T Consensus 32 lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 32 LPDDWVCPLCGA 43 (52)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 345677888864
No 271
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=25.03 E-value=19 Score=16.48 Aligned_cols=12 Identities=17% Similarity=0.708 Sum_probs=9.8
Q ss_pred Ccccccccccch
Q psy18179 52 LSCPMCRKRLSI 63 (108)
Q Consensus 52 ~~CP~Cr~~~~~ 63 (108)
..||.|++.+..
T Consensus 10 ~~C~~C~~~i~~ 21 (39)
T 2i5o_A 10 VPCEKCGSLVPV 21 (39)
T ss_dssp EECTTTCCEEEG
T ss_pred cccccccCcCCc
Confidence 579999998873
No 272
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.96 E-value=18 Score=15.83 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=11.0
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2en9_A 10 KKLFKCNECKKTFTQS 25 (46)
T ss_dssp SCCCBCTTTCCBCSSH
T ss_pred CCCEECCccCcccCCH
Confidence 3457788888777654
No 273
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.92 E-value=17 Score=15.60 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=10.8
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (44)
T 2en7_A 10 MKPYVCNECGKAFRSK 25 (44)
T ss_dssp SSSSCCTTTCCCCSSH
T ss_pred CcCeECCCCCCccCCH
Confidence 3457788887777653
No 274
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.92 E-value=29 Score=14.10 Aligned_cols=13 Identities=23% Similarity=0.587 Sum_probs=7.0
Q ss_pred ccccccccccccC
Q psy18179 16 SVLCLVCQGILIK 28 (108)
Q Consensus 16 ~~~C~IC~~~~~~ 28 (108)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 3556666555543
No 275
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.75 E-value=19 Score=15.84 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=11.4
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2eon_A 10 EKPYKCQVCGKAFRVS 25 (46)
T ss_dssp CCSCBCSSSCCBCSSH
T ss_pred CcccCCCCCCcccCcH
Confidence 3457888888877754
No 276
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=24.68 E-value=68 Score=15.37 Aligned_cols=46 Identities=17% Similarity=0.401 Sum_probs=25.2
Q ss_pred CCCCCCcccccc--ccccccCceecCCCCcchHHhHHHHhhcCCCcccccccccc
Q psy18179 10 NTLTPDSVLCLV--CQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62 (108)
Q Consensus 10 ~~~~~~~~~C~I--C~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 62 (108)
+......+.|++ |...|.....|. .| +........+.|+.|...+.
T Consensus 13 ~~~~~~~~~C~~~~C~k~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 13 VVPKMRPYACPVESCDRRFSRSDELT-RH------IRIHTGQKPFQCRICMRNFS 60 (73)
T ss_dssp CCCCCCCEECSSTTBCCEESSHHHHH-HH------HHHHHCCCCEECTTTCCEES
T ss_pred cCCCCCccCCcCCCCCCccCCHHHHH-HH------HHhhCCCCCeECCCCCchhC
Confidence 344555688874 877776543221 01 00111233478999998876
No 277
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=24.67 E-value=42 Score=14.41 Aligned_cols=6 Identities=50% Similarity=1.586 Sum_probs=3.2
Q ss_pred cccccc
Q psy18179 54 CPMCRK 59 (108)
Q Consensus 54 CP~Cr~ 59 (108)
||.|.+
T Consensus 19 CP~CtA 24 (32)
T 2bai_A 19 CPKCSA 24 (32)
T ss_dssp HHHHHC
T ss_pred ccccce
Confidence 565543
No 278
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.62 E-value=26 Score=17.24 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=7.9
Q ss_pred CCCccccccccc
Q psy18179 13 TPDSVLCLVCQG 24 (108)
Q Consensus 13 ~~~~~~C~IC~~ 24 (108)
..+++.||+|..
T Consensus 33 lP~dw~CP~Cga 44 (55)
T 2v3b_B 33 IPADWVCPDCGV 44 (55)
T ss_dssp SCTTCCCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 345667888864
No 279
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.58 E-value=56 Score=16.66 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=6.0
Q ss_pred cccccccccc
Q psy18179 18 LCLVCQGILI 27 (108)
Q Consensus 18 ~C~IC~~~~~ 27 (108)
.|..|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 2ehe_A 17 TCAECQQLIG 26 (82)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCccc
Confidence 4666666555
No 280
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.53 E-value=18 Score=15.82 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=11.7
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2epz_A 10 EKPFDCIDCGKAFSDH 25 (46)
T ss_dssp CCSBCCTTTCCCBSSH
T ss_pred CCCeECCCCCceeCCH
Confidence 3458888888887764
No 281
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=24.21 E-value=3.8 Score=20.61 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCcchHHhHHHHhhcCCCccccccc
Q psy18179 35 NHHVCLECLQRICDNSNLSCPMCRK 59 (108)
Q Consensus 35 gH~fC~~Ci~~~~~~~~~~CP~Cr~ 59 (108)
.|+.|..|-...+..+...|..|..
T Consensus 16 tH~~CrRCG~~syH~qK~~Ca~CGy 40 (57)
T 1vq8_1 16 THTKCRRCGEKSYHTKKKVCSSCGF 40 (57)
T ss_dssp CEEECTTTCSEEEETTTTEETTTCT
T ss_pred ccccccccCChhhhccccccccccC
Confidence 4777777766655544556888875
No 282
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.12 E-value=19 Score=15.68 Aligned_cols=16 Identities=13% Similarity=0.382 Sum_probs=11.1
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2enf_A 10 EKPYKCNECGKVFTQN 25 (46)
T ss_dssp CCSCBCSSSCCBCSSH
T ss_pred CcCeECCCCCcccCCH
Confidence 4457888888777654
No 283
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.08 E-value=27 Score=18.13 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=8.3
Q ss_pred CCCccccccccc
Q psy18179 13 TPDSVLCLVCQG 24 (108)
Q Consensus 13 ~~~~~~C~IC~~ 24 (108)
..+++.||+|..
T Consensus 37 lPddw~CP~Cga 48 (70)
T 1dx8_A 37 LSDSFMCPACRS 48 (70)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 345678888865
No 284
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.02 E-value=24 Score=15.27 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=10.8
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 8 ~k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 8 EKPYSCPVCGLRFKRK 23 (45)
T ss_dssp CCSSEETTTTEECSCH
T ss_pred CCCCcCCCCCcccCCH
Confidence 4457788887776643
No 285
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.83 E-value=18 Score=15.81 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=13.5
Q ss_pred CCccccccccccccCceec
Q psy18179 14 PDSVLCLVCQGILIKPIKL 32 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l 32 (108)
...+.|.+|...|.....|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L 28 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQRVHL 28 (46)
T ss_dssp CCSEECTTTCCEESSSHHH
T ss_pred CCCeECCCCCcccCCHHHH
Confidence 4468899998888765443
No 286
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.81 E-value=18 Score=15.76 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=11.0
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2eq2_A 10 GKPYQCNECGKAFSQT 25 (46)
T ss_dssp SCSSSCCSSCCCCSSH
T ss_pred CCCeECCCCCcccCCH
Confidence 3457788888777654
No 287
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.63 E-value=30 Score=13.81 Aligned_cols=8 Identities=63% Similarity=1.564 Sum_probs=3.6
Q ss_pred cccccccc
Q psy18179 54 CPMCRKRL 61 (108)
Q Consensus 54 CP~Cr~~~ 61 (108)
|+.|...+
T Consensus 5 C~~C~k~F 12 (33)
T 1rim_A 5 CPECPKRF 12 (33)
T ss_dssp CSSSCCCC
T ss_pred CCCCCchh
Confidence 44444443
No 288
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.50 E-value=18 Score=15.75 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=11.7
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ytr_A 10 EKPYKCNECGKAFSQT 25 (46)
T ss_dssp CCTTCCTTTCCCCSSH
T ss_pred CcCcCCCCCCCccCCH
Confidence 4457888888877754
No 289
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.49 E-value=19 Score=15.76 Aligned_cols=16 Identities=13% Similarity=0.220 Sum_probs=11.2
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2eq1_A 10 EKPYKCNECGKAFRAH 25 (46)
T ss_dssp SCCCCCTTTTCCCSSH
T ss_pred CCCeECCcCChhhCCH
Confidence 4457888888777654
No 290
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.27 E-value=19 Score=15.69 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=11.3
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|++|...|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (46)
T 2eoq_A 10 EKPFKCDICGKSFCGR 25 (46)
T ss_dssp SCSCCCSSSCCCCSSH
T ss_pred CCCcCCCcCCchhCCH
Confidence 3457888888877754
No 291
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.24 E-value=19 Score=15.71 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=11.1
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2en3_A 10 EKPFQCKECGMNFSWS 25 (46)
T ss_dssp CCSEECSSSCCEESSS
T ss_pred CCCeeCcccChhhCCH
Confidence 3457888888777654
No 292
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.22 E-value=20 Score=15.64 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=11.1
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2yth_A 10 EKPFQCEECGKRFTQN 25 (46)
T ss_dssp SSSBCCSSSCCCBSSH
T ss_pred CcCCCCCCCCcccCCH
Confidence 3457888888777654
No 293
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.20 E-value=20 Score=15.56 Aligned_cols=16 Identities=13% Similarity=0.139 Sum_probs=11.5
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 10 EKPHECRECGKSFSFN 25 (46)
T ss_dssp CCSCBCTTTCCBCSSH
T ss_pred CCCeeCCCCCchhCCH
Confidence 3457888888877764
No 294
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.03 E-value=19 Score=15.72 Aligned_cols=16 Identities=13% Similarity=0.382 Sum_probs=11.1
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2yti_A 10 EKPYKCNECGKVFTQN 25 (46)
T ss_dssp CCTTCCSSSCCCCSSH
T ss_pred CcCeECCCCCcccCCh
Confidence 3457888888777654
No 295
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.99 E-value=16 Score=14.92 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=8.9
Q ss_pred CccccccccccccC
Q psy18179 15 DSVLCLVCQGILIK 28 (108)
Q Consensus 15 ~~~~C~IC~~~~~~ 28 (108)
..+.|.+|...|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elv_A 8 LLYDCHICERKFKN 21 (36)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCccCC
Confidence 34677777766654
No 296
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.92 E-value=16 Score=14.72 Aligned_cols=13 Identities=15% Similarity=0.659 Sum_probs=7.4
Q ss_pred ccccccccccccC
Q psy18179 16 SVLCLVCQGILIK 28 (108)
Q Consensus 16 ~~~C~IC~~~~~~ 28 (108)
.+.|.+|...|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 3566666665543
No 297
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.78 E-value=43 Score=14.40 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=10.8
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (47)
T 2epx_A 10 KKPYECIECGKAFIQN 25 (47)
T ss_dssp CCSBCCSSSCCCBSSH
T ss_pred CCCEECCccCchhCCh
Confidence 3457788887777654
No 298
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.76 E-value=15 Score=15.83 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=10.6
Q ss_pred CccccccccccccCc
Q psy18179 15 DSVLCLVCQGILIKP 29 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p 29 (108)
..+.|.+|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2eoj_A 11 NPYECCECGKVFSRK 25 (44)
T ss_dssp CSCEETTTTEECSSH
T ss_pred cCeeCCCCCCccCCH
Confidence 457888888777654
No 299
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=22.63 E-value=18 Score=19.71 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=8.0
Q ss_pred ccccccccccc
Q psy18179 16 SVLCLVCQGIL 26 (108)
Q Consensus 16 ~~~C~IC~~~~ 26 (108)
.+.|+||...|
T Consensus 45 ~i~C~VCr~tF 55 (86)
T 1wvk_A 45 SIQCKVCMQTF 55 (86)
T ss_dssp CEEETTTTEEE
T ss_pred CCCChHhHhhH
Confidence 57788888744
No 300
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=22.61 E-value=83 Score=17.14 Aligned_cols=13 Identities=31% Similarity=1.004 Sum_probs=9.1
Q ss_pred CCCcccccccccc
Q psy18179 50 SNLSCPMCRKRLS 62 (108)
Q Consensus 50 ~~~~CP~Cr~~~~ 62 (108)
..+.|+.|...+.
T Consensus 99 ~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 99 HTKVCPVCKKEFT 111 (129)
T ss_dssp CCCBCTTTCCBCS
T ss_pred CCCCCCCCCcccC
Confidence 3467888877765
No 301
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.58 E-value=22 Score=15.50 Aligned_cols=16 Identities=13% Similarity=0.380 Sum_probs=11.6
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 10 KKPYKCNECGKVFTQN 25 (46)
T ss_dssp CSSCBCTTTCCBCSSH
T ss_pred CcCeECCCCCCeeCCH
Confidence 4457888888877754
No 302
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.57 E-value=29 Score=14.56 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=8.4
Q ss_pred CccccccccccccC
Q psy18179 15 DSVLCLVCQGILIK 28 (108)
Q Consensus 15 ~~~~C~IC~~~~~~ 28 (108)
..+.|++|...|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (41)
T 2ept_A 9 RVYECQECGKSFRQ 22 (41)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCCcCC
Confidence 34667766666554
No 303
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.56 E-value=15 Score=15.01 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=8.0
Q ss_pred ccccccccccccC
Q psy18179 16 SVLCLVCQGILIK 28 (108)
Q Consensus 16 ~~~C~IC~~~~~~ 28 (108)
.+.|.+|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elo_A 9 SYSCPVCEKSFSE 21 (37)
T ss_dssp CCEETTTTEECSS
T ss_pred CcCCCCCCCccCC
Confidence 4667777666554
No 304
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=22.46 E-value=57 Score=25.19 Aligned_cols=26 Identities=15% Similarity=0.071 Sum_probs=18.7
Q ss_pred CccccccccccccCceecCCCCcchH
Q psy18179 15 DSVLCLVCQGILIKPIKLPCNHHVCL 40 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p~~l~CgH~fC~ 40 (108)
....|..|...-.-=..|.|||..|.
T Consensus 214 ~~~~C~~c~~~~~lw~CL~Cg~vgC~ 239 (854)
T 3ihp_A 214 CGWKCSKCDMRENLWLNLTDGSILCG 239 (854)
T ss_dssp SCCCCSSSCCCSSEEEETTTCCEEEC
T ss_pred CCCcCcCcCCcCceEEEecCCCcccc
Confidence 44678888765443356789999995
No 305
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=22.35 E-value=22 Score=15.52 Aligned_cols=16 Identities=13% Similarity=0.301 Sum_probs=11.5
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 10 EKPYECKECGKAFSQT 25 (46)
T ss_dssp SCSCBCSSSCCBCSCH
T ss_pred CCceECCCCCchhCCH
Confidence 3457888888877754
No 306
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.19 E-value=21 Score=15.65 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=11.1
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2eom_A 10 ERGHRCSDCGKFFLQA 25 (46)
T ss_dssp CSSCCCSSSCCCCSSH
T ss_pred CCCcCCCCCCCeeCCh
Confidence 3457888888777654
No 307
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.14 E-value=17 Score=15.92 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=11.4
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2eml_A 10 EKPYECSVCGKAFSHR 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CCCeeCCCcCCccCCH
Confidence 3457888888877754
No 308
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.14 E-value=21 Score=15.61 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=11.1
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2eoy_A 10 EKCFKCNKCEKTFSCS 25 (46)
T ss_dssp SCCEECSSSCCEESSS
T ss_pred CCCEECcCCCCcCCCH
Confidence 3457888888777654
No 309
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.09 E-value=21 Score=15.54 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=10.8
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ep1_A 10 EKPYECSDCGKSFIKK 25 (46)
T ss_dssp CCSSCCSSSCCCCSSH
T ss_pred CCCcCCCCCCchhCCH
Confidence 3457788887777654
No 310
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.00 E-value=17 Score=15.92 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=11.6
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|++|...|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (46)
T 2em5_A 10 TKSHQCHECGRGFTLK 25 (46)
T ss_dssp SCSEECSSSCCEESSH
T ss_pred CCCeECCcCCCccCCH
Confidence 4458888888877754
No 311
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.00 E-value=23 Score=15.48 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=10.9
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2em6_A 10 EKCYKCDVCGKEFSQS 25 (46)
T ss_dssp CCCCBCSSSCCBCSSH
T ss_pred CCCeECCCCCcccCCH
Confidence 3457788887777653
No 312
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=21.96 E-value=17 Score=15.40 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=9.7
Q ss_pred CccccccccccccCc
Q psy18179 15 DSVLCLVCQGILIKP 29 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p 29 (108)
..+.|.+|...|...
T Consensus 10 ~~~~C~~C~k~f~~~ 24 (42)
T 2epc_A 10 TPYLCGQCGKSFTQR 24 (42)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCcccCCH
Confidence 457777777766643
No 313
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.85 E-value=21 Score=15.41 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=10.6
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (44)
T 2eou_A 10 KTTSECQECGKIFRHS 25 (44)
T ss_dssp SCCCCCTTTCCCCSSH
T ss_pred CcCeECCCCCcccCCH
Confidence 3457788887777653
No 314
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.76 E-value=17 Score=15.88 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=11.0
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~~~~~C~~C~k~F~~~ 25 (46)
T 2emi_A 10 ERHYECSECGKAFIQK 25 (46)
T ss_dssp CCCEECSSSCCEESSH
T ss_pred CCCCCCCCCCcccCCH
Confidence 3457888888777654
No 315
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=21.65 E-value=17 Score=15.42 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=9.9
Q ss_pred CccccccccccccCc
Q psy18179 15 DSVLCLVCQGILIKP 29 (108)
Q Consensus 15 ~~~~C~IC~~~~~~p 29 (108)
..+.|++|...|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (42)
T 2el5_A 9 NPYECSECGKAFNRK 23 (42)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCccCCCcChhhCCH
Confidence 357788877766643
No 316
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.45 E-value=18 Score=15.62 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=11.2
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~~~~~C~~C~k~F~~~ 25 (44)
T 2eox_A 10 SKSYNCNECGKAFTRI 25 (44)
T ss_dssp CCCEEETTTTEEESSS
T ss_pred CCCeECcccCcccCCH
Confidence 3457888888777654
No 317
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.42 E-value=24 Score=15.38 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=11.7
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2elz_A 10 EKPYKCEDCGKGYNRR 25 (46)
T ss_dssp CSSCBCSSSCCBCSSH
T ss_pred CCCeeCcccCchhCCH
Confidence 4468888888877754
No 318
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.39 E-value=22 Score=15.58 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=11.4
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 10 EKPYKCMECGKAFGDN 25 (46)
T ss_dssp CCSSSBTTTTBCCSSH
T ss_pred CCCcCCCCCCchhCCH
Confidence 3457888888877754
No 319
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.36 E-value=17 Score=15.59 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=10.7
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (44)
T 2eof_A 10 EKPYECNECQKAFNTK 25 (44)
T ss_dssp CCSEECTTTCCEESCH
T ss_pred CCCeECCCCCcccCCH
Confidence 3457788887777653
No 320
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.21 E-value=18 Score=15.80 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=10.9
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~~~~~C~~C~k~F~~~ 25 (46)
T 2em3_A 10 EKPYECKVCSKAFTQK 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CcCeECCCCCcccCCH
Confidence 3457888887777654
No 321
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.11 E-value=18 Score=15.10 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=7.6
Q ss_pred ccccccccccccC
Q psy18179 16 SVLCLVCQGILIK 28 (108)
Q Consensus 16 ~~~C~IC~~~~~~ 28 (108)
.+.|.+|...|..
T Consensus 6 ~~~C~~C~k~f~~ 18 (39)
T 1njq_A 6 SYTCSFCKREFRS 18 (39)
T ss_dssp SEECTTTCCEESS
T ss_pred ceECCCCCcccCC
Confidence 3566666665553
No 322
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.09 E-value=22 Score=15.43 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=11.2
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2eq4_A 10 EKLYNCKECGKSFSRA 25 (46)
T ss_dssp CCCCCBTTTTBCCSCH
T ss_pred CCCeECCCCCCccCch
Confidence 3457888888877754
No 323
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.04 E-value=53 Score=16.81 Aligned_cols=46 Identities=15% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCccccccccccccCceec---CC---CCcchHHhHHHHhh-cCCCccccccccc
Q psy18179 14 PDSVLCLVCQGILIKPIKL---PC---NHHVCLECLQRICD-NSNLSCPMCRKRL 61 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l---~C---gH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 61 (108)
.+.+.| ||...... ..+ .| ..-|...|+.-... .+...||.|....
T Consensus 4 ~~~~yC-~C~~~~~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 4 GSSGYC-ICNQVSYG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp SCCCCS-TTSCCCCS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCeEE-EcCCCCCC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 455667 58876443 333 23 25688889863221 2346799886554
No 324
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.98 E-value=5.9 Score=20.24 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=17.6
Q ss_pred CCcchHHhHHHHhhcCCCccccccc
Q psy18179 35 NHHVCLECLQRICDNSNLSCPMCRK 59 (108)
Q Consensus 35 gH~fC~~Ci~~~~~~~~~~CP~Cr~ 59 (108)
.|+.|..|-...+..+...|..|.-
T Consensus 16 tH~lCrRCG~~syH~qK~~Ca~CGy 40 (62)
T 3j21_e 16 THIRCRRCGRVSYNVKKGYCAACGF 40 (62)
T ss_dssp CCCBCSSSCSBCEETTTTEETTTCT
T ss_pred ceeeecccCcchhccccccccccCC
Confidence 4778888876665545567888876
No 325
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.97 E-value=18 Score=15.73 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=10.9
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2yts_A 10 EKPYICNECGKSFIQK 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CcCEECCCCChhhCCh
Confidence 3457888887777653
No 326
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=20.96 E-value=22 Score=15.44 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=11.3
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2em0_A 10 EKTWKCRECDMCFSQA 25 (46)
T ss_dssp CCCCCCSSSCCCCSSH
T ss_pred CcCeECCCCCcccCCH
Confidence 3457888888877754
No 327
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.95 E-value=23 Score=15.41 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=12.2
Q ss_pred CCccccccccccccCce
Q psy18179 14 PDSVLCLVCQGILIKPI 30 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~ 30 (108)
+..+.|.+|...|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2yu8_A 10 EKPYKCNECGKVFTQNS 26 (46)
T ss_dssp CSSEECSSSCCEESSSH
T ss_pred CCCeECCcCCchhCCHH
Confidence 44588888888777653
No 328
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.79 E-value=18 Score=15.73 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=10.8
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2eow_A 10 EKPYKCNECGKAFRAR 25 (46)
T ss_dssp CCCEECTTSCCEESSH
T ss_pred CCCeeccccCChhcCH
Confidence 3457788887777654
No 329
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.72 E-value=23 Score=15.37 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=11.4
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2epw_A 10 EKPCKCTECGKAFCWK 25 (46)
T ss_dssp CCSEECSSSCCEESSS
T ss_pred CCCeeCCCCCCccCCH
Confidence 3457888888777754
No 330
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=32 Score=14.88 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=11.2
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~~~~~C~~C~k~f~~~ 25 (46)
T 2ep0_A 10 EKPYKCDVCHKSFRYG 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CCCeeCcccCcccCCh
Confidence 3457888888777654
No 331
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.69 E-value=19 Score=15.79 Aligned_cols=16 Identities=13% Similarity=0.330 Sum_probs=10.5
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2yto_A 10 EKPYKCSDCGKAFTRK 25 (46)
T ss_dssp CCCEECSSSCCEESSH
T ss_pred CCCEECcccCCccCCH
Confidence 3457788887776653
No 332
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=20.66 E-value=21 Score=22.42 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=23.3
Q ss_pred CCccccccccccccCceec-CCCCcchHHhHHH
Q psy18179 14 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQR 45 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~ 45 (108)
.....|++|.+.+.++... .=|-..|..|...
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3467899999988876433 3477899999753
No 333
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.65 E-value=57 Score=22.34 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCCccccccccccccC----ce-ecCCCCcchHHhHH
Q psy18179 13 TPDSVLCLVCQGILIK----PI-KLPCNHHVCLECLQ 44 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~----p~-~l~CgH~fC~~Ci~ 44 (108)
......|.+|...++- -. .-.||..+|..|..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 3456789999988762 11 23699999999965
No 334
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.65 E-value=38 Score=14.66 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=11.0
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ytt_A 10 EKPYQCSECGKSFSGS 25 (46)
T ss_dssp CCTTCCSSSCCCCSSH
T ss_pred CCCeeCCCCCcccCCH
Confidence 3457788887777754
No 335
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.61 E-value=19 Score=15.62 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=10.0
Q ss_pred CCccccccccccccC
Q psy18179 14 PDSVLCLVCQGILIK 28 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~ 28 (108)
+..+.|.+|...|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (44)
T 2epv_A 10 EKPYECNECGKAFIW 24 (44)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCeECCCCCcccCc
Confidence 345778877776664
No 336
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.40 E-value=18 Score=15.73 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=11.1
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2eq3_A 10 EKPYECNQCGKAFSVR 25 (46)
T ss_dssp CCSSEETTTTEECSSH
T ss_pred CCCeECCCCChhhCCH
Confidence 3457888888777654
No 337
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.37 E-value=93 Score=15.34 Aligned_cols=32 Identities=22% Similarity=0.662 Sum_probs=18.6
Q ss_pred CCCccccccccccccCceec-CCCCcch-HHhHHHH
Q psy18179 13 TPDSVLCLVCQGILIKPIKL-PCNHHVC-LECLQRI 46 (108)
Q Consensus 13 ~~~~~~C~IC~~~~~~p~~l-~CgH~fC-~~Ci~~~ 46 (108)
......|.||.. ... .+- .|+-.|| ..|....
T Consensus 9 ~~~~~~C~vC~~-~~k-Y~CPrC~~~yCSl~C~k~H 42 (56)
T 2yqq_A 9 KCSTVVCVICLE-KPK-YRCPACRVPYCSVVCFRKH 42 (56)
T ss_dssp CCCCCCCTTTCS-CCS-EECTTTCCEESSHHHHHHH
T ss_pred CCCCCccCcCcC-CCe-eeCCCCCCCeeCHHHHHHH
Confidence 333346888887 322 233 5888777 3666544
No 338
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.35 E-value=20 Score=15.65 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=11.4
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ene_A 10 EKPYKCNECGKVFRHN 25 (46)
T ss_dssp SSSEECSSSCCEESSH
T ss_pred CCCeECCCCCchhCCh
Confidence 4457888888877754
No 339
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.27 E-value=19 Score=15.64 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=10.9
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
...+.|.+|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ytf_A 10 EKPFECSECQKAFNTK 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CCCcCCCCCCcccCCH
Confidence 3457888887777654
No 340
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.21 E-value=43 Score=14.24 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=7.7
Q ss_pred ccccccccccccC
Q psy18179 16 SVLCLVCQGILIK 28 (108)
Q Consensus 16 ~~~C~IC~~~~~~ 28 (108)
.+.|.+|...|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (43)
T 2yrm_A 10 AFFCNECDCRFSE 22 (43)
T ss_dssp CBCCSSSCCCBSS
T ss_pred CEECCCCCCeeCC
Confidence 4566666665554
No 341
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.05 E-value=20 Score=15.66 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=11.3
Q ss_pred CCccccccccccccCc
Q psy18179 14 PDSVLCLVCQGILIKP 29 (108)
Q Consensus 14 ~~~~~C~IC~~~~~~p 29 (108)
+..+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2ep2_A 10 EKPYECSICGKSFTKK 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CcCcCCCCCCcccCCH
Confidence 3457888888777754
Done!