RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18179
(108 letters)
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 43.4 bits (102), Expect = 1e-07
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
LC +C PC H +C CL ++ CP CR +
Sbjct: 25 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 69
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 40.2 bits (94), Expect = 1e-06
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63
C CQ P LPC H +C CL+ S + CP+C+ +
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 38.7 bits (90), Expect = 8e-06
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 15 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
S+ C +C+ IL P++ C H C C+ R CP CR
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 37.7 bits (87), Expect = 3e-05
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKRLSIW-LRRNKDFSLLI 75
C +C ++ +P+ C+H C C+ ++ + CP+C+ ++ L+ + FS L+
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLV 83
Query: 76 DE 77
+E
Sbjct: 84 EE 85
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 34.9 bits (80), Expect = 2e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 19 CLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
C +C + LPC H C C+ R + +CP+C+ +
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVE 51
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 34.3 bits (78), Expect = 3e-04
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSL 73
P+ C + ++ P+ + +Q+ D + +CP ++ L L
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-------HAGL 58
Query: 74 LIDENLWNQIQKY 86
+ L + I +
Sbjct: 59 TPNYVLKSLIALW 71
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 29.6 bits (65), Expect = 0.041
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 27 IKPIKLPCNHHVCLECLQRICDNSN----LSCPMCRK 59
+ C+H L CL + N N L CP C+
Sbjct: 54 VVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 28.2 bits (62), Expect = 0.066
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 15 DSVLCLVCQGIL-----IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
D C C+ +K + C H +C C+ + +CP C L
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 27.5 bits (61), Expect = 0.081
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 15 DSVLCLVCQGILIKPIKL----PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63
D V C VC L + C H EC+ + + +CP+CR + +
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVVV 55
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 27.8 bits (61), Expect = 0.11
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 19 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 59
CNH C+ R CP+ +
Sbjct: 42 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNR 81
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 27.0 bits (59), Expect = 0.13
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 27 IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 62
I C + +C C RI + N CP CRK
Sbjct: 15 INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 25.2 bits (54), Expect = 0.87
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 14 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW 64
PD + + ++ +P P + ++ P+ R L+
Sbjct: 5 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 55
>d1vk3a4 d.139.1.1 (A:508-603) Phosphoribosylformylglycinamidine
synthase II, domains 2 and 4 {Thermotoga maritima
[TaxId: 2336]}
Length = 96
Score = 24.9 bits (54), Expect = 1.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 KDFSLLIDENLWNQIQKYYKKEVDQKLF 96
DF L ++ LW I +K ++ F
Sbjct: 14 NDFELEREKELWRAI----RKLSEEGAF 37
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 25.1 bits (54), Expect = 1.4
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 15 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNKDFS 72
+ C C IL +P+ L C H C C+ CP+C I L+ N+
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPAWIQDLKINRQLD 77
Query: 73 LLID 76
+I
Sbjct: 78 SMIQ 81
>d1dtdb_ g.30.1.1 (B:) Carboxypeptidase inhibitor {Medicinal leech
(Hirudo medicinalis) [TaxId: 6421]}
Length = 61
Score = 23.9 bits (51), Expect = 2.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 14 PDSVLCLVCQGILIKPIKLPCNHH 37
PD V C +C+G P + CN H
Sbjct: 9 PDQVCCFICRGAAPLPSEGECNPH 32
>d2oy9a1 a.276.1.1 (A:6-90) Uncharacterized protein BH2638
{Bacillus halodurans [TaxId: 86665]}
Length = 85
Score = 23.5 bits (51), Expect = 4.4
Identities = 2/19 (10%), Positives = 10/19 (52%)
Query: 78 NLWNQIQKYYKKEVDQKLF 96
+ + I++ Y + + ++
Sbjct: 18 HFFQAIEQAYDQGIAREDL 36
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 22.4 bits (47), Expect = 7.8
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 18 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 63
LC + + +P+ P + + + L + P+ + LSI
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 47
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene
serine/threonine-protein kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 73
Score = 22.4 bits (48), Expect = 8.3
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 9/47 (19%)
Query: 41 ECLQRICDNSNLSCPMCR-------KRLSIWLRRNKDFSLLIDENLW 80
+ L + L+ C ++ + + L E L
Sbjct: 25 DSLDKALKVRGLNQDCCVVYRLIKGRKTVTAW--DTAIAPLDGEELI 69
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 22.9 bits (49), Expect = 8.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 34 CNHHVCLECLQRICDNSNLSCPMCRKR 60
C C C + +CP C+ R
Sbjct: 41 CGFPACRPCYEYERREGTQNCPQCKTR 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.476
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 438,346
Number of extensions: 19371
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 47
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)