BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18180
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C IL++P+ LPCNH +C C Q + +NL CP CR+R+S W R + + L++ +
Sbjct: 16 CGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75
Query: 97 LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQH 141
LW IQK+Y KE ++ Q+ + +Q + LL+ P L+
Sbjct: 76 LWEIIQKHYAKECKLRISGQESKEIVDEYQPV--RLLSKPGELRR 118
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2
SV=1
Length = 557
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 95
+C +CQ IL++P+ LPC H +C C Q + ++L CP CRKR+S W R + L++
Sbjct: 15 ICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARLHSRTRTLVNT 74
Query: 96 NLWNQIQKYYKKEVDQKLFDQD 117
LW +IQK Y KE ++ Q+
Sbjct: 75 ELWERIQKQYPKECQRRASGQE 96
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168
PE=2 SV=1
Length = 535
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDE 95
+C +CQ IL++P+ LPC H +C C Q + ++L CP CRKR+S W R++ L+++
Sbjct: 15 ICPICQEILLEPVTLPCKHTLCNPCFQMTVEKASLCCPFCRKRVSTWARQHSRTRTLVNK 74
Query: 96 NLWNQIQKYYKKEVDQKLFDQD 117
LW IQK Y K+ ++ Q+
Sbjct: 75 ELWEVIQKQYPKQCQRRASGQE 96
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C IL++P+ LPCNH +C C Q + +NL CP CR+R+S W R + + L++ +
Sbjct: 16 CGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRRNSLVNTD 75
Query: 97 LWNQIQKYYKKEVDQKLFDQD 117
LW IQK+Y KE ++ Q+
Sbjct: 76 LWEIIQKHYAKECKLRISGQE 96
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 26 SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 85
S+ L +C VC I ++P+ LPC H C C D SN+ CP+CRKR+S W R
Sbjct: 15 SSGGLKRSDCVCPVCLEIFLEPVTLPCMHTFCKPCFLETVDKSNMCCPLCRKRVSTWARL 74
Query: 86 NKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDD 118
N L++ LW +IQ + + ++++ DD
Sbjct: 75 NSRNKTLVNMELWRRIQDAFPSQCERRVQGIDD 107
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C IL++P+ LPCNH +C C Q + ++L CP CR+R+S W R + + L++
Sbjct: 16 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 75
Query: 97 LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQ 140
LW IQK+Y +E + Q+ + +Q + LL+ P L+
Sbjct: 76 LWTIIQKHYPRECKLRASGQESEEVADDYQPV--RLLSKPGELR 117
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C IL +P+ LPCNH +C C + + ++L CP CR+R+S W R + L++
Sbjct: 16 CQICVEILFEPVTLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTNSLVNME 75
Query: 97 LWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTAPTYLQH 141
LW IQK+Y KE + Q+ + +Q + LL+ P L+
Sbjct: 76 LWEIIQKHYPKECKLRASGQESKEIVDDYQPV--RLLSKPGELRR 118
>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3
SV=1
Length = 630
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDF 89
L+ + C VC IL++P+ +PC H VCL C QR +L CP+CR R+S W R+
Sbjct: 29 LSLEEARCPVCSEILLEPVTMPCGHSVCLHCFQRTVKLISLCCPLCRLRVSSWARKQSRE 88
Query: 90 SLLIDENLWNQIQKYYKKEVDQKLFDQDDG 119
L++ LW ++ + + +++ +Q DG
Sbjct: 89 KSLVNAELWELVRLSHPERCKRRM-EQRDG 117
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C + +P+ PC H CL+CL+R C + N CP+C+ LS L K +I E
Sbjct: 426 CALCMRLFYEPVTTPCGHTFCLKCLER-CLDHNAKCPLCKDGLSQCLASRKYSKNVIMEE 484
Query: 97 LWNQIQKYYKKEVDQ--KLFDQDDGVWENYHQHISTYLLT 134
L I K+ +E+ + KL++++ N ++++ ++ T
Sbjct: 485 L---IAKFLPEELKERRKLYEEEMEELSNLNKNVPIFVCT 521
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
D C C G L P+ L C H C CL+R ++ C +C +LS
Sbjct: 154 DGFKCRKCHGFLSDPVSLSCGHTFCKLCLER-GRAADRRCALCGVKLS 200
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C + +P+ PC H CL+CL+R C + N CP+C+ LS L K +I E
Sbjct: 467 CALCMRLFYEPVTTPCGHTFCLKCLER-CLDHNAKCPLCKDGLSQCLASRKYSKNVIMEE 525
Query: 97 LWNQIQKYYKKEVDQ--KLFDQDDGVWENYHQHISTYLLT 134
L I K+ +E+ + KL++++ N ++++ ++ T
Sbjct: 526 L---IAKFLPEELKERRKLYEEEMEELSNLNKNVPIFVCT 562
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
D C C G L P+ L C H C CL+R ++ C +C +LS
Sbjct: 154 DGFKCRKCHGFLSDPVSLSCGHTFCKLCLER-GRAADRRCALCGVKLS 200
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWL-RRNKDFSLLIDE 95
C +C +L +P+ PC H CL+CL+R D++ CP+C+ +LS L RN + ++L +E
Sbjct: 449 CALCMRLLFEPVTTPCGHTFCLKCLERCLDHAP-HCPLCKDKLSELLASRNFNITVLAEE 507
Query: 96 NLWNQIQKYYKKEVD--QKLFDQD 117
++ +Y E+ ++++D++
Sbjct: 508 LIF----RYLPDELSDRKRIYDEE 527
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQ 62
D + C C+ +L KP+ LPC VC C++
Sbjct: 139 DLLGCPRCRRLLHKPVTLPCGLTVCKRCVE 168
>sp|E7EZF3|UHRF1_DANRE E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1
Length = 776
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
LC+ CQ ++ +PI C H+VC ECLQR +CP CR L
Sbjct: 705 LCICCQEVVYQPITTECQHNVCRECLQRSFKAKVYTCPACRHDL 748
>sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=Mus musculus GN=Trim10
PE=2 SV=2
Length = 489
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD------NSNLSCPMCRK 77
T D V C +CQG L +P+ + C H+ C CL R C+ +LSCP+C++
Sbjct: 8 TSLADEVNCPICQGTLREPVTIDCGHNFCRGCLTRYCEIPGPESEESLSCPLCKE 62
>sp|Q7TMI3|UHRF2_MOUSE E3 ubiquitin-protein ligase UHRF2 OS=Mus musculus GN=Uhrf2 PE=1
SV=1
Length = 803
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLI 93
S +C+ CQ ++ +P+ C H+VC +CLQR SCP CR L +++ +++
Sbjct: 731 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG------QNYVMVL 784
Query: 94 DENLWNQIQKYY 105
+E L + ++
Sbjct: 785 NETLQTLLDLFF 796
>sp|Q9CWS1|RN135_MOUSE E3 ubiquitin-protein ligase RNF135 OS=Mus musculus GN=Rnf135 PE=2
SV=1
Length = 417
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 24 CNSNNT---LTPDSVLCLVCQGILIKPIKLPCNHHVCLECL-------QRICDNSNLSCP 73
C+ N L+ D + C++CQG+L +P LPC H CL CL + D +CP
Sbjct: 5 CSGNAVPVWLSEDDLSCIICQGLLDQPTTLPCGHSFCLRCLHDLWVSKRGAVDGCPWACP 64
Query: 74 MCRK 77
+CRK
Sbjct: 65 ICRK 68
>sp|Q96PU4|UHRF2_HUMAN E3 ubiquitin-protein ligase UHRF2 OS=Homo sapiens GN=UHRF2 PE=1
SV=1
Length = 802
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
S +C+ CQ ++ +P+ C H+VC +CLQR SCP CR L
Sbjct: 730 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 775
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C + +P+ PC H C CL+R D++ CP+C++ L +L D + +
Sbjct: 479 CSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPY-CPLCKESLKEYL---ADRRYCVTQL 534
Query: 97 LWNQIQKYYKKEVDQ--KLFDQDDGVWENYHQHISTYLLT 134
L I KY E+ + K++D++ + +++ ++ T
Sbjct: 535 LEELIVKYLPDELSERKKIYDEETAELSHLTKNVPIFVCT 574
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
CL C+G L +P+ +PC H C CL+R C +CR RL
Sbjct: 123 CLGCRGFLSEPVTVPCGHSYCRRCLRR---ELRARCRLCRDRL 162
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWL-RRNKDFSLLIDE 95
C +C + +P+ PC H CL+CL+R C + N CP+C+ L L R +++++E
Sbjct: 461 CSLCMRLFYEPVTTPCGHTFCLKCLER-CLDHNAKCPLCKDVLLQCLPSRKYSKNVILEE 519
Query: 96 NLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLT 134
+ + + +K+ ++L++++ N ++++ ++ T
Sbjct: 520 LIATFLPEEFKER--KRLYEEEMEELSNLNKNVPIFVCT 556
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
D C C G L P+ L C H C CL+R ++ C +C +LS
Sbjct: 155 DGFKCKKCHGFLSDPVSLWCGHTFCKLCLER-GRAADRRCALCGVKLS 201
>sp|Q5M929|RN135_RAT E3 ubiquitin-protein ligase RNF135 OS=Rattus norvegicus GN=Rnf135
PE=2 SV=1
Length = 415
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRI-------CDNSNLSCPMCRKRLS 80
L+ + + C++CQG+L P LPC H CL+CL+ + D+ +CP+CRK S
Sbjct: 14 LSEEDLSCIICQGLLDWPTTLPCGHSFCLQCLKDLWVSKRAGVDSCPWACPICRKGPS 71
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC---DNSNLSCPMCRK 77
L D + C++CQG+L P LPC H C CL+ + D +CP CR+
Sbjct: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQ 64
>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3
SV=1
Length = 732
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
L+ D + C +C L P LPC H C +CL ++ + S L CP CR+ + +
Sbjct: 14 LSSDFLACKICLEQLRVPKTLPCLHTYCQDCLAQLAEGSRLRCPECRESVPV 65
>sp|A7E320|UHRF1_BOVIN E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1
Length = 786
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
C+ CQ ++ +PI C H+VC +CL R SCP CR L
Sbjct: 717 CICCQELVFRPITTVCQHNVCKDCLDRSFKAQVFSCPACRYDL 759
>sp|Q7YR32|TRI10_PANTR Tripartite motif-containing protein 10 OS=Pan troglodytes
GN=TRIM10 PE=3 SV=1
Length = 481
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD------NSNLSCPMCRK 77
T D V C +CQG L +P+ + C H+ C CL R C+ + +CP+C++
Sbjct: 8 TSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKE 62
>sp|O14212|YDT7_SCHPO Uncharacterized RING finger protein C6B12.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC6B12.07c PE=4 SV=2
Length = 470
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C + KP++L C+H CL CL + CP+CR + + K S ID
Sbjct: 374 CAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFCPLCRAKEVM-----KADSRNIDHA 428
Query: 97 LWNQIQKYYKKEVDQKLFDQDDGVW 121
L N ++ Y+ +E+ +K + ++ +
Sbjct: 429 LMNFMKTYFPREIKEKFEENENDTF 453
>sp|Q9UDY6|TRI10_HUMAN Tripartite motif-containing protein 10 OS=Homo sapiens GN=TRIM10
PE=2 SV=3
Length = 481
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD------NSNLSCPMCRK 77
T D V C +CQG L +P+ + C H+ C CL R C+ + +CP+C++
Sbjct: 8 TSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKE 62
>sp|F1MRW8|RN169_BOVIN E3 ubiquitin-protein ligase RNF169 OS=Bos taurus GN=RNF169 PE=3
SV=3
Length = 689
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 40 CQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 85
C G L P LPC H +C C QR D + CP CR R + W RR
Sbjct: 49 CAGCLETPGEAAALPCGHSLCRGCAQRAADAAGPCCPRCRARGAGWARR 97
>sp|Q9BRZ2|TRI56_HUMAN E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1
SV=3
Length = 755
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
L+ D + C +C L P LPC H C +CL ++ D + CP CR+ + +
Sbjct: 14 LSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPV 65
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNK 87
T+ + V C +C ++P+ + C H C EC+ ++ CP+CR+R + LR N+
Sbjct: 8 TMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLRPNR 67
Query: 88 DFSLLID 94
+ +++
Sbjct: 68 QLANMVN 74
>sp|Q96T88|UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1
SV=1
Length = 793
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
C+ CQ ++ +PI C H+VC +CL R SCP CR L
Sbjct: 724 CICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 766
>sp|Q8NCN4|RN169_HUMAN E3 ubiquitin-protein ligase RNF169 OS=Homo sapiens GN=RNF169 PE=1
SV=2
Length = 708
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 40 CQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRR 85
C G L P LPC H +C C QR D + CP CR R W RR
Sbjct: 68 CAGCLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWARR 116
>sp|Q8VDF2|UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1
SV=2
Length = 782
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
C+ CQ ++ +P+ C H+VC +CL R SCP CR L
Sbjct: 713 CICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPACRFEL 755
>sp|Q7TPK1|UHRF1_RAT E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1
PE=2 SV=2
Length = 774
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
C+ CQ ++ +P+ C H+VC +CL R SCP CR L
Sbjct: 705 CICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 747
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRLSIWLRRNK-DF 89
+ V+C +C IL KP+ + C H+ CL+C+ +I + S CP+C+ +R+N F
Sbjct: 12 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCK----TSVRKNAIRF 67
Query: 90 SLLIDENLWNQIQKYYKKEVDQK 112
+ L+ NL +IQ EV K
Sbjct: 68 NSLL-RNLVEKIQALQASEVQSK 89
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNKDFSL 91
+ V C +C +++P+ + C H C EC+ + N SCP CR++ + LR N+ +
Sbjct: 16 EEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNLRPNRHIAN 75
Query: 92 LIDENLWNQIQKYYKKEVDQK----------LFDQDDG 119
++ ENL QI + KK + LF ++DG
Sbjct: 76 MV-ENL-KQIAQNTKKSTQETHCMKHGEKLHLFCEEDG 111
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNK 87
T+ + V C +C +++P+ + C H C EC+ + CP+CR+ + LR N+
Sbjct: 8 TMMWEEVTCSICLDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHFLLQNLRPNR 67
Query: 88 DFSLLID 94
+ ++D
Sbjct: 68 QVANMVD 74
>sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65 OS=Homo sapiens GN=TRIM65
PE=2 SV=3
Length = 517
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL--SIWLRRNK 87
L + + C +C G+ P+ LPC H+ C C++ D +CP CR+ LRRN
Sbjct: 5 LLEEKLTCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFPDGAELRRNV 64
Query: 88 DFSLLID 94
S +++
Sbjct: 65 ALSGVLE 71
>sp|F6UA42|UHRF1_XENTR E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1
PE=3 SV=2
Length = 775
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLL 92
++ LC+ CQ ++ +PI C+H++C CL R +CP CR L K++SL
Sbjct: 702 ETFLCICCQEVVYEPITTECHHNICKGCLDRSFKALVHNCPACRHDLG------KNYSLN 755
Query: 93 IDENL 97
+++ L
Sbjct: 756 VNKPL 760
>sp|Q5NCC9|TRI58_MOUSE Tripartite motif-containing protein 58 OS=Mus musculus GN=Trim58
PE=2 SV=1
Length = 485
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSN-----LSCPMCRKRLS-IWLRRNKDFS 90
C VC L +PI + C H CL C+ C+ S+ +CP CR R N+ +
Sbjct: 15 CSVCLDFLQEPISVDCGHSFCLRCISEFCEKSDSAQGVYACPQCRGPFRPASFRPNRQLA 74
Query: 91 LLID 94
L+D
Sbjct: 75 SLVD 78
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL--SIWLRRNK 87
L D V C +C G P+ LPC H C C+Q + SCP CR+ L RN
Sbjct: 6 LEEDVVTCSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPFPEGAKLSRNV 65
Query: 88 DFSLLI 93
S L+
Sbjct: 66 KMSTLL 71
>sp|Q9CQ29|RN151_MOUSE RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1
Length = 239
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 32 PD-SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
PD LC VC G+L +P +LPC+H C +C+ R N +CP CRK ++
Sbjct: 14 PDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQN-TCPCCRKEVT 62
>sp|Q8N448|LNX2_HUMAN Ligand of Numb protein X 2 OS=Homo sapiens GN=LNX2 PE=1 SV=1
Length = 690
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
D ++C +C L++P+ PC H C +CL+ + CP+ RKRL
Sbjct: 46 DDLVCHICLQPLLQPLDTPCGHTFCYKCLRNFLQEKDF-CPLDRKRL 91
>sp|Q91XL2|LNX2_MOUSE Ligand of Numb protein X 2 OS=Mus musculus GN=Lnx2 PE=1 SV=2
Length = 687
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
D ++C +C L++P+ PC H C +CL+ + CP+ RKRL
Sbjct: 47 DDLVCHICLQPLLQPLDTPCGHTFCHKCLRNFLQEKDF-CPLDRKRL 92
>sp|Q62158|TRI27_MOUSE Zinc finger protein RFP OS=Mus musculus GN=Trim27 PE=1 SV=2
Length = 513
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRI--CDNSNLSCPMCRK 77
C VC ++P+ L C H++C CL R +N+SCP CR+
Sbjct: 16 CPVCLQYFVEPMMLDCGHNICCACLARCWGAAETNVSCPQCRE 58
>sp|Q5M7Z0|RNFT1_HUMAN RING finger and transmembrane domain-containing protein 1 OS=Homo
sapiens GN=RNFT1 PE=2 SV=2
Length = 435
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKD 88
+C +CQ KPI L C H C EC+ + N +CP+CR +S + + KD
Sbjct: 374 ICSICQAEFQKPILLICQHIFCEECMT-LWFNREKTCPLCRTVISDHINKWKD 425
>sp|Q8NG06|TRI58_HUMAN Tripartite motif-containing protein 58 OS=Homo sapiens GN=TRIM58
PE=2 SV=2
Length = 486
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSN------LSCPMCR 76
C VC L +P+ + C H CL C+ C+ S+ +CP CR
Sbjct: 16 CPVCLDFLQEPVSVDCGHSFCLRCISEFCEKSDGAQGGVYACPQCR 61
>sp|Q5E9G4|TRI10_BOVIN Tripartite motif-containing protein 10 OS=Bos taurus GN=TRIM10
PE=2 SV=1
Length = 489
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN------LSCPMCRK 77
T D V C VCQG L +P+ + C H+ C CL R + ++ +CP+C++
Sbjct: 8 TSLADEVNCPVCQGTLREPVTIDCGHNFCRVCLTRYLEITSPDPEEPPTCPLCKE 62
>sp|Q2TBT8|RN151_BOVIN RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 32 PD-SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79
PD + LC VC G+L +P++LPC+H C +C+ R +CP CRK +
Sbjct: 14 PDCNFLCSVCHGVLKRPVRLPCSHIFCKKCILRWLARQK-TCPCCRKEV 61
>sp|A1L020|MEX3A_HUMAN RNA-binding protein MEX3A OS=Homo sapiens GN=MEX3A PE=1 SV=1
Length = 520
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 37 CLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMC 75
C+VC + +PC H++ C+EC RIC+ ++ CP+C
Sbjct: 469 CMVCFESEVTAALVPCGHNLFCMECAVRICERTDPECPVC 508
>sp|O19085|TRI10_PIG Tripartite motif-containing protein 10 OS=Sus scrofa GN=TRIM10
PE=3 SV=2
Length = 482
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNL------SCPMCRK 77
D V C +CQG L +P+ + C H+ C CL R + L +CP+C++
Sbjct: 12 DEVNCPICQGTLREPVTIDCGHNFCCVCLTRYLEIPCLDPGELPTCPLCKE 62
>sp|Q28GL3|RNFT1_XENTR RING finger and transmembrane domain-containing protein 1
OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1
Length = 416
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
+C +CQ IKPI L C H C EC+ + N +CP+CR +S
Sbjct: 355 MCAICQAEFIKPIVLVCQHVFCEECIS-LWFNKEKTCPLCRTVIS 398
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,867,876
Number of Sequences: 539616
Number of extensions: 2241812
Number of successful extensions: 8279
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 375
Number of HSP's that attempted gapping in prelim test: 7842
Number of HSP's gapped (non-prelim): 731
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)