Query psy18180
Match_columns 143
No_of_seqs 207 out of 1289
Neff 8.7
Searched_HMMs 29240
Date Sat Aug 17 00:53:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l11_A E3 ubiquitin-protein li 99.9 1.4E-23 4.9E-28 138.6 2.9 109 26-136 7-115 (115)
2 3fl2_A E3 ubiquitin-protein li 99.8 2.8E-21 9.4E-26 129.2 1.3 74 32-111 50-123 (124)
3 1t1h_A Gspef-atpub14, armadill 99.8 2E-19 6.9E-24 110.8 4.0 70 30-106 4-73 (78)
4 3ztg_A E3 ubiquitin-protein li 99.8 6.6E-19 2.3E-23 111.7 5.8 75 28-108 7-83 (92)
5 2kr4_A Ubiquitin conjugation f 99.7 3.2E-18 1.1E-22 107.3 6.4 73 29-109 9-81 (85)
6 1z6u_A NP95-like ring finger p 99.7 2.4E-18 8.2E-23 118.6 4.4 73 32-110 76-148 (150)
7 2kre_A Ubiquitin conjugation f 99.7 6.1E-18 2.1E-22 109.1 5.5 71 29-107 24-94 (100)
8 1wgm_A Ubiquitin conjugation f 99.7 1E-17 3.6E-22 107.6 6.3 72 29-108 17-89 (98)
9 4ayc_A E3 ubiquitin-protein li 99.7 4.3E-18 1.5E-22 115.7 4.3 65 33-103 52-116 (138)
10 2yu4_A E3 SUMO-protein ligase 99.7 2.7E-17 9.2E-22 104.9 3.7 70 31-107 4-82 (94)
11 2ckl_B Ubiquitin ligase protei 99.7 2E-17 7E-22 115.4 3.4 73 30-108 50-123 (165)
12 2ckl_A Polycomb group ring fin 99.7 7.8E-17 2.7E-21 105.0 5.2 73 32-108 13-86 (108)
13 3lrq_A E3 ubiquitin-protein li 99.7 2.4E-17 8.2E-22 106.2 2.4 50 32-81 20-70 (100)
14 2c2l_A CHIP, carboxy terminus 99.6 2.1E-16 7.2E-21 117.8 6.6 72 29-107 203-274 (281)
15 2csy_A Zinc finger protein 183 99.6 8.8E-17 3E-21 99.6 3.8 51 29-80 10-60 (81)
16 2y43_A E3 ubiquitin-protein li 99.6 1.3E-16 4.5E-21 102.4 4.4 68 32-107 20-88 (99)
17 2egp_A Tripartite motif-contai 99.6 5.8E-18 2E-22 104.3 -2.0 53 29-81 7-65 (79)
18 2ecy_A TNF receptor-associated 99.6 2E-16 6.8E-21 94.3 4.5 52 29-80 10-61 (66)
19 2f42_A STIP1 homology and U-bo 99.6 3.3E-16 1.1E-20 110.4 6.0 71 30-107 102-172 (179)
20 2ysl_A Tripartite motif-contai 99.6 4.7E-16 1.6E-20 94.3 5.3 52 29-80 15-68 (73)
21 2yur_A Retinoblastoma-binding 99.6 3.6E-16 1.2E-20 95.3 3.9 53 28-80 9-63 (74)
22 3hct_A TNF receptor-associated 99.6 2.7E-16 9.3E-21 104.0 3.4 70 28-104 12-81 (118)
23 2ysj_A Tripartite motif-contai 99.6 8.4E-16 2.9E-20 90.7 5.2 48 28-75 14-63 (63)
24 2ecw_A Tripartite motif-contai 99.6 8.3E-17 2.8E-21 100.1 0.7 53 29-81 14-71 (85)
25 2d8t_A Dactylidin, ring finger 99.6 4.6E-16 1.6E-20 94.0 3.7 54 27-81 8-61 (71)
26 2djb_A Polycomb group ring fin 99.6 9.5E-16 3.2E-20 92.9 4.6 53 28-81 9-62 (72)
27 1jm7_B BARD1, BRCA1-associated 99.6 4.5E-16 1.5E-20 102.8 2.9 65 33-107 21-86 (117)
28 1jm7_A BRCA1, breast cancer ty 99.6 3.2E-15 1.1E-19 97.6 6.8 48 34-81 21-70 (112)
29 2ecv_A Tripartite motif-contai 99.6 1.4E-16 4.6E-21 99.1 -0.7 53 29-81 14-71 (85)
30 2ct2_A Tripartite motif protei 99.6 2.8E-15 9.5E-20 93.8 5.2 54 28-81 9-68 (88)
31 1rmd_A RAG1; V(D)J recombinati 99.6 1.5E-15 5.1E-20 100.1 3.8 50 32-81 21-70 (116)
32 1g25_A CDK-activating kinase a 99.6 1.3E-15 4.6E-20 90.4 3.1 48 33-80 2-54 (65)
33 2ecj_A Tripartite motif-contai 99.5 3.9E-15 1.3E-19 86.2 4.4 48 28-75 9-58 (58)
34 3ng2_A RNF4, snurf, ring finge 99.5 1.7E-15 5.8E-20 91.2 2.5 51 30-81 6-63 (71)
35 2ea6_A Ring finger protein 4; 99.5 3.4E-15 1.1E-19 89.3 3.6 53 27-80 8-67 (69)
36 3knv_A TNF receptor-associated 99.5 2.4E-15 8.4E-20 102.5 2.2 51 30-80 27-77 (141)
37 3hcs_A TNF receptor-associated 99.5 5.6E-15 1.9E-19 103.4 3.4 69 29-104 13-81 (170)
38 1e4u_A Transcriptional repress 99.5 1.3E-14 4.6E-19 89.3 4.2 52 30-81 7-62 (78)
39 3htk_C E3 SUMO-protein ligase 99.5 7.6E-14 2.6E-18 103.0 8.0 94 6-106 146-250 (267)
40 2l0b_A E3 ubiquitin-protein li 99.5 8.6E-15 3E-19 92.6 2.2 50 30-80 36-88 (91)
41 2xeu_A Ring finger protein 4; 99.5 9.6E-15 3.3E-19 86.0 2.0 48 33-81 2-56 (64)
42 2kiz_A E3 ubiquitin-protein li 99.5 4E-14 1.4E-18 84.8 4.8 52 29-81 9-63 (69)
43 1iym_A EL5; ring-H2 finger, ub 99.5 2.5E-14 8.7E-19 81.9 2.9 48 32-80 3-54 (55)
44 1bor_A Transcription factor PM 99.5 6.3E-15 2.2E-19 85.1 0.3 46 32-81 4-49 (56)
45 2ecm_A Ring finger and CHY zin 99.5 2.5E-14 8.6E-19 81.9 2.6 47 33-80 4-54 (55)
46 2ect_A Ring finger protein 126 99.5 3E-14 1E-18 87.3 3.1 53 28-81 9-64 (78)
47 2ecn_A Ring finger protein 141 99.4 2.6E-14 8.8E-19 85.9 2.7 51 29-81 10-60 (70)
48 1chc_A Equine herpes virus-1 r 99.4 2.7E-14 9.1E-19 85.3 2.5 49 32-81 3-52 (68)
49 1x4j_A Ring finger protein 38; 99.4 5.3E-14 1.8E-18 85.7 2.3 50 30-80 19-71 (75)
50 2ep4_A Ring finger protein 24; 99.4 9E-14 3.1E-18 84.4 3.2 52 29-81 10-64 (74)
51 4ap4_A E3 ubiquitin ligase RNF 99.4 8.5E-14 2.9E-18 93.0 2.4 49 32-81 5-60 (133)
52 1v87_A Deltex protein 2; ring- 99.4 3.2E-13 1.1E-17 88.5 3.6 48 34-81 25-94 (114)
53 4ic3_A E3 ubiquitin-protein li 99.4 1.6E-13 5.5E-18 83.5 1.6 44 33-81 23-67 (74)
54 2ecl_A Ring-box protein 2; RNF 99.3 2.3E-12 7.7E-17 79.7 4.0 48 32-80 13-75 (81)
55 2y1n_A E3 ubiquitin-protein li 99.3 2.7E-12 9.2E-17 99.9 5.0 48 34-81 332-379 (389)
56 2vje_A E3 ubiquitin-protein li 99.3 1.8E-12 6.2E-17 76.7 2.3 49 31-80 5-56 (64)
57 2ecg_A Baculoviral IAP repeat- 99.2 3.4E-12 1.2E-16 77.7 3.0 44 33-81 24-68 (75)
58 4ap4_A E3 ubiquitin ligase RNF 99.2 5E-12 1.7E-16 84.3 1.9 50 31-81 69-125 (133)
59 2yho_A E3 ubiquitin-protein li 99.2 6.2E-12 2.1E-16 77.4 2.2 43 34-81 18-61 (79)
60 2vje_B MDM4 protein; proto-onc 99.2 7.2E-12 2.5E-16 73.8 2.4 48 33-81 6-56 (63)
61 3dpl_R Ring-box protein 1; ubi 99.2 1.9E-11 6.5E-16 79.3 3.7 47 33-80 36-100 (106)
62 1wim_A KIAA0161 protein; ring 99.1 1.6E-11 5.4E-16 77.8 2.7 46 33-78 4-61 (94)
63 2bay_A PRE-mRNA splicing facto 99.1 3.1E-11 1.1E-15 70.7 1.8 47 34-81 3-50 (61)
64 2ea5_A Cell growth regulator w 99.1 5.4E-11 1.9E-15 71.1 2.8 46 31-81 12-58 (68)
65 2d8s_A Cellular modulator of i 99.0 2.1E-10 7.3E-15 70.6 3.5 52 30-81 11-70 (80)
66 3t6p_A Baculoviral IAP repeat- 99.0 5.9E-11 2E-15 91.5 0.7 44 33-81 294-338 (345)
67 4a0k_B E3 ubiquitin-protein li 98.9 1.1E-10 3.9E-15 76.8 0.2 47 33-80 47-111 (117)
68 2ct0_A Non-SMC element 1 homol 98.7 3.3E-08 1.1E-12 59.8 5.0 51 30-80 11-63 (74)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1.2E-07 4.2E-12 55.0 3.3 49 32-80 4-58 (60)
70 3vk6_A E3 ubiquitin-protein li 98.4 1.1E-07 3.8E-12 60.1 2.9 47 36-82 3-50 (101)
71 3k1l_B Fancl; UBC, ring, RWD, 98.3 1.5E-07 5.1E-12 72.0 2.0 50 32-81 306-373 (381)
72 3m62_A Ubiquitin conjugation f 98.0 2.7E-06 9.1E-11 72.6 3.2 72 31-110 888-960 (968)
73 2jun_A Midline-1; B-BOX, TRIM, 97.6 2.1E-05 7.3E-10 49.7 1.6 33 33-65 2-37 (101)
74 3nw0_A Non-structural maintena 97.5 0.00013 4.5E-09 53.3 5.3 47 34-80 180-228 (238)
75 2cs3_A Protein C14ORF4, MY039 95.8 0.0085 2.9E-07 36.1 3.2 38 29-66 10-51 (93)
76 1weo_A Cellulose synthase, cat 95.0 0.023 7.9E-07 34.9 3.3 48 33-80 15-69 (93)
77 3i2d_A E3 SUMO-protein ligase 94.9 0.023 7.9E-07 43.9 3.9 66 32-104 247-316 (371)
78 4fo9_A E3 SUMO-protein ligase 94.3 0.045 1.5E-06 42.1 4.3 66 31-103 212-281 (360)
79 2ko5_A Ring finger protein Z; 93.9 0.03 1E-06 34.7 2.2 45 34-81 28-73 (99)
80 2l5u_A Chromodomain-helicase-D 92.2 0.13 4.5E-06 29.2 3.0 49 28-78 5-58 (61)
81 1y02_A CARP2, FYVE-ring finger 91.9 0.021 7E-07 37.3 -0.8 51 29-80 14-68 (120)
82 2lri_C Autoimmune regulator; Z 89.0 0.3 1E-05 28.2 2.6 44 34-79 12-60 (66)
83 3mjh_B Early endosome antigen 88.7 0.048 1.7E-06 27.4 -0.8 16 33-48 4-19 (34)
84 2ku3_A Bromodomain-containing 88.2 0.2 6.7E-06 29.4 1.5 56 24-79 6-67 (71)
85 1wil_A KIAA1045 protein; ring 86.5 0.67 2.3E-05 28.1 3.1 45 32-77 13-75 (89)
86 1f62_A Transcription factor WS 85.9 0.29 1E-05 26.4 1.2 43 36-78 2-50 (51)
87 2k16_A Transcription initiatio 84.9 0.26 8.7E-06 29.0 0.7 49 32-80 16-70 (75)
88 2lbm_A Transcriptional regulat 84.8 0.96 3.3E-05 30.2 3.6 45 33-77 62-116 (142)
89 1vfy_A Phosphatidylinositol-3- 84.3 0.33 1.1E-05 28.5 1.0 31 33-63 10-44 (73)
90 1z2q_A LM5-1; membrane protein 83.9 0.55 1.9E-05 28.3 1.9 32 33-64 20-55 (84)
91 1z60_A TFIIH basal transcripti 83.8 0.92 3.1E-05 25.6 2.7 39 36-75 17-58 (59)
92 3zyq_A Hepatocyte growth facto 83.2 0.76 2.6E-05 32.9 2.7 37 28-64 158-198 (226)
93 2zet_C Melanophilin; complex, 82.8 0.095 3.2E-06 35.5 -2.1 45 33-78 67-117 (153)
94 2lv9_A Histone-lysine N-methyl 81.1 0.38 1.3E-05 29.9 0.4 49 29-78 23-76 (98)
95 2yw8_A RUN and FYVE domain-con 78.8 0.58 2E-05 28.0 0.7 31 34-64 19-53 (82)
96 1joc_A EEA1, early endosomal a 78.5 0.47 1.6E-05 30.9 0.3 31 34-64 69-103 (125)
97 1dvp_A HRS, hepatocyte growth 78.2 0.62 2.1E-05 33.1 0.8 36 29-64 156-195 (220)
98 1zbd_B Rabphilin-3A; G protein 78.0 0.78 2.7E-05 30.3 1.2 67 4-78 33-107 (134)
99 2yql_A PHD finger protein 21A; 77.1 0.26 8.9E-06 27.3 -1.2 45 31-77 6-55 (56)
100 2l43_A N-teminal domain from h 76.8 1.7 5.7E-05 26.4 2.4 52 29-80 20-77 (88)
101 1we9_A PHD finger family prote 75.2 0.3 1E-05 27.7 -1.3 48 32-79 4-59 (64)
102 1wfk_A Zinc finger, FYVE domai 74.7 0.95 3.2E-05 27.5 0.9 33 32-64 7-43 (88)
103 1mm2_A MI2-beta; PHD, zinc fin 74.5 0.48 1.6E-05 26.8 -0.5 46 32-79 7-57 (61)
104 1x4u_A Zinc finger, FYVE domai 74.2 0.72 2.5E-05 27.7 0.2 30 34-63 14-47 (84)
105 2yt5_A Metal-response element- 73.8 0.35 1.2E-05 27.6 -1.2 49 32-80 4-63 (66)
106 1weu_A Inhibitor of growth fam 73.3 1.3 4.4E-05 27.2 1.2 47 32-79 34-86 (91)
107 3t7l_A Zinc finger FYVE domain 73.1 0.81 2.8E-05 27.9 0.3 32 34-65 20-55 (90)
108 2o35_A Hypothetical protein DU 72.9 1.2 4.1E-05 27.8 1.0 12 55-66 42-53 (105)
109 3fyb_A Protein of unknown func 72.8 1.2 4.1E-05 27.7 1.0 12 55-66 41-52 (104)
110 2d8v_A Zinc finger FYVE domain 72.4 1.6 5.4E-05 25.2 1.3 35 31-66 5-40 (67)
111 2ffw_A Midline-1; B-BOX, ring 72.3 3.7 0.00013 24.2 3.1 32 32-63 28-62 (78)
112 3o36_A Transcription intermedi 72.1 0.69 2.4E-05 31.9 -0.3 46 33-80 3-53 (184)
113 1xwh_A Autoimmune regulator; P 71.3 0.54 1.8E-05 26.9 -0.8 46 32-79 6-56 (66)
114 1m3v_A FLIN4, fusion of the LI 71.1 1.9 6.6E-05 27.4 1.8 47 34-81 32-81 (122)
115 2e6r_A Jumonji/ARID domain-con 71.0 0.31 1.1E-05 30.0 -2.0 50 29-78 11-66 (92)
116 3ql9_A Transcriptional regulat 70.8 3.2 0.00011 27.1 2.8 44 34-77 57-110 (129)
117 1fp0_A KAP-1 corepressor; PHD 69.4 1.6 5.4E-05 26.7 1.0 47 30-78 21-72 (88)
118 3lqh_A Histone-lysine N-methyl 69.2 0.98 3.3E-05 31.4 0.0 47 34-80 2-65 (183)
119 1wen_A Inhibitor of growth fam 69.0 3.4 0.00012 23.9 2.4 47 32-79 14-66 (71)
120 1wem_A Death associated transc 68.5 2 6.8E-05 25.1 1.3 47 32-79 14-71 (76)
121 2gmg_A Hypothetical protein PF 68.1 1.2 4.2E-05 28.0 0.3 29 46-80 67-95 (105)
122 2puy_A PHD finger protein 21A; 67.2 0.62 2.1E-05 26.1 -1.1 45 33-79 4-53 (60)
123 2xqn_T Testin, TESS; metal-bin 65.9 4 0.00014 25.9 2.4 45 33-80 29-74 (126)
124 1wff_A Riken cDNA 2810002D23 p 65.9 6.7 0.00023 23.7 3.2 28 32-59 23-52 (85)
125 1wev_A Riken cDNA 1110020M19; 65.8 0.42 1.4E-05 29.1 -2.2 48 33-80 15-74 (88)
126 2ysm_A Myeloid/lymphoid or mix 65.3 1.4 4.7E-05 27.7 0.1 45 32-76 5-55 (111)
127 6rxn_A Rubredoxin; electron tr 65.1 1.5 5.2E-05 23.3 0.3 36 34-79 4-40 (46)
128 3u5n_A E3 ubiquitin-protein li 65.1 0.85 2.9E-05 32.1 -1.0 46 33-80 6-56 (207)
129 2ct7_A Ring finger protein 31; 65.1 1.1 3.7E-05 27.0 -0.4 29 36-64 27-61 (86)
130 3ttc_A HYPF, transcriptional r 65.0 3.1 0.00011 34.5 2.1 52 28-79 11-99 (657)
131 2jne_A Hypothetical protein YF 63.8 0.29 9.8E-06 30.5 -3.2 42 34-81 32-73 (101)
132 2jmo_A Parkin; IBR, E3 ligase, 63.5 0.38 1.3E-05 28.7 -2.7 33 34-66 25-70 (80)
133 1wep_A PHF8; structural genomi 63.3 6.2 0.00021 23.1 2.8 50 30-80 8-65 (79)
134 2jrp_A Putative cytoplasmic pr 61.8 0.18 6.1E-06 30.4 -4.3 11 35-45 3-13 (81)
135 3vth_A Hydrogenase maturation 61.7 5.7 0.0002 33.5 3.2 52 29-80 106-194 (761)
136 3mpx_A FYVE, rhogef and PH dom 61.0 1.7 6E-05 33.5 0.0 32 34-65 375-410 (434)
137 2fiy_A Protein FDHE homolog; F 60.8 1 3.6E-05 33.8 -1.2 46 32-78 180-231 (309)
138 1yuz_A Nigerythrin; rubrythrin 60.6 6.1 0.00021 27.7 2.8 13 33-45 170-182 (202)
139 2xjy_A Rhombotin-2; oncoprotei 59.1 4.8 0.00016 25.6 1.9 47 33-80 28-77 (131)
140 2ri7_A Nucleosome-remodeling f 58.8 1.9 6.5E-05 29.2 -0.1 47 32-79 6-60 (174)
141 3v43_A Histone acetyltransfera 57.8 1.5 5.2E-05 27.7 -0.7 42 36-77 63-111 (112)
142 2lv2_A Insulinoma-associated p 57.8 13 0.00043 22.0 3.5 42 29-81 23-68 (85)
143 2ro1_A Transcription intermedi 57.4 1.8 6.3E-05 30.0 -0.4 45 35-79 3-50 (189)
144 1rut_X Flinc4, fusion protein 57.4 2.7 9.3E-05 28.8 0.5 47 33-80 31-80 (188)
145 2rgt_A Fusion of LIM/homeobox 56.4 9.9 0.00034 25.4 3.2 44 33-79 32-75 (169)
146 4g9i_A Hydrogenase maturation 55.4 6.5 0.00022 33.2 2.5 52 30-81 102-190 (772)
147 2pv0_B DNA (cytosine-5)-methyl 55.3 8.4 0.00029 29.8 3.0 44 34-78 93-148 (386)
148 2vnf_A ING 4, P29ING4, inhibit 53.4 2.2 7.4E-05 23.9 -0.5 44 33-77 9-58 (60)
149 3o70_A PHD finger protein 13; 52.1 1.7 5.9E-05 25.0 -1.1 45 32-77 17-66 (68)
150 3pwf_A Rubrerythrin; non heme 51.5 13 0.00045 25.2 3.2 32 5-45 118-149 (170)
151 2jmi_A Protein YNG1, ING1 homo 51.0 1.9 6.4E-05 26.4 -1.1 46 31-77 23-75 (90)
152 2kdx_A HYPA, hydrogenase/ureas 50.0 22 0.00077 22.3 4.0 19 3-21 42-61 (119)
153 2jvx_A NF-kappa-B essential mo 49.7 2.1 7.3E-05 20.3 -0.7 15 34-48 3-17 (28)
154 1x62_A C-terminal LIM domain p 49.3 9.7 0.00033 21.9 2.0 41 32-81 13-53 (79)
155 3asl_A E3 ubiquitin-protein li 47.6 2.4 8.2E-05 24.5 -0.9 42 36-77 20-68 (70)
156 3c6w_A P28ING5, inhibitor of g 47.6 2.3 7.8E-05 23.7 -1.0 44 33-77 8-57 (59)
157 2jtn_A LIM domain-binding prot 47.3 8.9 0.0003 26.0 1.8 43 35-80 88-130 (182)
158 2g6q_A Inhibitor of growth pro 46.2 2.5 8.5E-05 23.9 -1.0 43 33-77 10-59 (62)
159 2e6s_A E3 ubiquitin-protein li 45.6 2.2 7.5E-05 25.2 -1.3 42 36-77 28-76 (77)
160 3ask_A E3 ubiquitin-protein li 45.4 2.8 9.7E-05 30.1 -1.0 42 36-77 176-224 (226)
161 3shb_A E3 ubiquitin-protein li 45.3 2.1 7E-05 25.4 -1.5 42 36-77 28-76 (77)
162 1wfh_A Zinc finger (AN1-like) 45.1 20 0.00069 20.3 2.7 29 31-59 12-41 (64)
163 3vhs_A ATPase wrnip1; zinc fin 44.9 14 0.00049 16.9 1.7 10 71-80 8-17 (29)
164 2cup_A Skeletal muscle LIM-pro 44.8 5.8 0.0002 23.9 0.5 45 33-80 32-77 (101)
165 1x61_A Thyroid receptor intera 44.6 21 0.00073 19.8 3.0 33 34-66 33-66 (72)
166 2lce_A B-cell lymphoma 6 prote 44.4 27 0.00093 19.0 3.4 44 31-81 14-57 (74)
167 1lko_A Rubrerythrin all-iron(I 44.0 9.8 0.00034 26.2 1.6 35 4-45 132-166 (191)
168 4gzn_C ZFP-57, zinc finger pro 43.9 19 0.00065 19.6 2.6 38 33-81 3-44 (60)
169 1x6e_A Zinc finger protein 24; 43.5 30 0.001 18.7 3.5 42 32-80 12-53 (72)
170 1x4w_A Hypothetical protein FL 43.1 8.2 0.00028 22.2 0.9 29 31-59 12-44 (67)
171 1wg2_A Zinc finger (AN1-like) 42.7 21 0.00072 20.3 2.6 28 32-59 13-41 (64)
172 2epr_A POZ-, at HOOK-, and zin 41.5 33 0.0011 16.9 4.1 18 30-47 8-25 (48)
173 3uk3_C Zinc finger protein 217 41.3 24 0.00082 17.9 2.7 41 34-81 4-44 (57)
174 2csz_A Synaptotagmin-like prot 40.5 14 0.00049 21.7 1.7 50 27-77 18-72 (76)
175 2l4z_A DNA endonuclease RBBP8, 40.5 16 0.00055 23.2 2.1 38 34-80 61-99 (123)
176 1x5w_A Zinc finger protein 64, 39.8 35 0.0012 18.3 3.4 38 32-80 7-48 (70)
177 3o7a_A PHD finger protein 13 v 39.5 4.2 0.00014 21.8 -0.7 39 39-77 8-51 (52)
178 2vpb_A Hpygo1, pygopus homolog 39.5 12 0.0004 21.2 1.2 31 31-61 5-40 (65)
179 2rsd_A E3 SUMO-protein ligase 39.4 2.6 8.9E-05 24.1 -1.7 46 31-77 7-64 (68)
180 4gne_A Histone-lysine N-methyl 39.2 11 0.00037 23.7 1.1 47 30-80 11-64 (107)
181 1wfl_A Zinc finger protein 216 38.2 32 0.0011 20.1 3.0 26 33-58 24-50 (74)
182 2lq6_A Bromodomain-containing 38.2 36 0.0012 20.3 3.3 38 27-64 10-51 (87)
183 2kwj_A Zinc finger protein DPF 37.7 1.9 6.4E-05 27.4 -2.7 44 36-79 60-109 (114)
184 2dar_A PDZ and LIM domain prot 37.7 22 0.00076 20.8 2.4 25 36-60 27-51 (90)
185 2d8x_A Protein pinch; LIM doma 37.4 16 0.00054 20.3 1.6 33 34-66 31-64 (70)
186 2cur_A Skeletal muscle LIM-pro 36.6 28 0.00096 19.1 2.6 33 34-66 31-64 (69)
187 1wew_A DNA-binding family prot 36.6 12 0.0004 21.9 0.9 47 32-79 14-73 (78)
188 1x64_A Alpha-actinin-2 associa 36.5 26 0.0009 20.4 2.5 41 32-81 23-63 (89)
189 1wig_A KIAA1808 protein; LIM d 36.2 10 0.00035 21.5 0.6 34 33-66 30-65 (73)
190 2dmd_A Zinc finger protein 64, 35.8 48 0.0017 18.8 3.7 15 32-46 6-20 (96)
191 2d8z_A Four and A half LIM dom 35.2 25 0.00084 19.4 2.2 33 33-65 30-63 (70)
192 1wd2_A Ariadne-1 protein homol 34.2 12 0.00042 20.8 0.7 15 66-80 3-17 (60)
193 2ee8_A Protein ODD-skipped-rel 34.1 69 0.0024 18.5 4.9 18 29-46 12-29 (106)
194 1bbo_A Human enhancer-binding 33.6 36 0.0012 17.1 2.6 39 35-80 2-40 (57)
195 1x4l_A Skeletal muscle LIM-pro 32.6 18 0.00062 20.1 1.3 32 33-64 34-66 (72)
196 2ctu_A Zinc finger protein 483 32.2 12 0.00041 20.2 0.5 36 32-81 16-51 (73)
197 3a1b_A DNA (cytosine-5)-methyl 31.8 23 0.00079 23.9 1.9 28 51-78 98-134 (159)
198 2adr_A ADR1; transcription reg 31.7 38 0.0013 17.3 2.5 37 34-81 2-42 (60)
199 3d00_A Tungsten formylmethanof 31.6 13 0.00043 25.9 0.5 26 32-62 161-186 (191)
200 1nyp_A Pinch protein; LIM doma 31.5 19 0.00066 19.6 1.3 31 34-64 31-62 (66)
201 2kpi_A Uncharacterized protein 31.0 36 0.0012 18.6 2.3 16 30-45 6-21 (56)
202 1wyh_A SLIM 2, skeletal muscle 30.9 25 0.00087 19.4 1.7 32 34-65 33-65 (72)
203 1wfe_A Riken cDNA 2310008M20 p 30.3 44 0.0015 20.0 2.8 28 31-58 22-52 (86)
204 1x4v_A Hypothetical protein LO 30.2 45 0.0015 18.7 2.6 27 33-59 11-40 (63)
205 1x6a_A LIMK-2, LIM domain kina 29.8 42 0.0014 19.0 2.6 34 33-66 40-76 (81)
206 2dlq_A GLI-kruppel family memb 29.4 80 0.0027 18.7 4.1 15 32-46 5-19 (124)
207 1vq8_Z 50S ribosomal protein L 29.2 35 0.0012 20.3 2.1 30 34-81 27-57 (83)
208 2xb1_A Pygopus homolog 2, B-ce 29.1 2.9 9.9E-05 26.2 -2.9 47 34-80 3-63 (105)
209 1x4s_A Protein FON, zinc finge 28.8 29 0.00099 19.4 1.6 38 26-63 3-44 (59)
210 3c5k_A HD6, histone deacetylas 28.4 16 0.00055 22.9 0.6 25 34-58 24-48 (109)
211 1ard_A Yeast transcription fac 27.6 21 0.00073 14.8 0.8 9 72-80 5-13 (29)
212 2lvu_A Zinc finger and BTB dom 33.2 13 0.00045 15.3 0.0 11 35-45 3-13 (26)
213 1wfp_A Zinc finger (AN1-like) 27.1 57 0.0019 19.0 2.7 28 32-59 23-51 (74)
214 2eps_A POZ-, at HOOK-, and zin 27.0 67 0.0023 16.1 4.4 39 31-80 9-52 (54)
215 1erd_A Pheromone ER-2; NMR {Eu 26.6 8.8 0.0003 18.9 -0.7 15 50-64 10-24 (40)
216 2e72_A POGO transposable eleme 26.5 20 0.0007 19.1 0.7 14 67-80 10-23 (49)
217 2cu8_A Cysteine-rich protein 2 26.5 33 0.0011 19.2 1.7 38 34-80 9-47 (76)
218 2cor_A Pinch protein; LIM doma 26.2 43 0.0015 19.0 2.2 38 34-80 15-52 (79)
219 1vd4_A Transcription initiatio 26.2 4.8 0.00016 21.8 -2.0 38 33-81 13-51 (62)
220 2lvt_A Zinc finger and BTB dom 32.1 14 0.00048 15.7 0.0 12 35-46 3-14 (29)
221 1j2o_A FLIN2, fusion of rhombo 26.1 49 0.0017 20.3 2.6 35 33-67 29-66 (114)
222 2els_A Zinc finger protein 406 26.0 31 0.0011 15.4 1.3 13 34-46 9-21 (36)
223 1l8d_A DNA double-strand break 25.7 18 0.00061 22.3 0.4 12 69-80 47-58 (112)
224 1x4i_A Inhibitor of growth pro 25.5 26 0.00088 20.0 1.1 47 33-80 5-57 (70)
225 1x4k_A Skeletal muscle LIM-pro 25.5 34 0.0011 18.8 1.6 32 34-65 33-65 (72)
226 1x3h_A Leupaxin; paxillin fami 25.4 49 0.0017 18.6 2.3 32 34-65 41-73 (80)
227 1znf_A 31ST zinc finger from X 25.1 24 0.00082 14.4 0.7 10 36-45 3-12 (27)
228 2lvr_A Zinc finger and BTB dom 30.8 15 0.00052 15.5 0.0 11 35-45 4-14 (30)
229 2d8y_A Eplin protein; LIM doma 24.8 42 0.0014 19.6 2.0 32 34-65 42-74 (91)
230 2elr_A Zinc finger protein 406 24.8 52 0.0018 14.5 2.0 11 35-45 10-20 (36)
231 2cuq_A Four and A half LIM dom 24.7 55 0.0019 18.4 2.5 32 34-65 41-73 (80)
232 1klr_A Zinc finger Y-chromosom 24.4 28 0.00096 14.4 0.9 11 35-45 3-13 (30)
233 2m0d_A Zinc finger and BTB dom 24.3 24 0.00081 14.7 0.6 11 35-45 4-14 (30)
234 2kvf_A Zinc finger and BTB dom 24.2 25 0.00085 14.6 0.7 9 72-80 6-14 (28)
235 1llm_C Chimera of ZIF23-GCN4; 24.2 56 0.0019 18.3 2.5 41 34-81 3-43 (88)
236 2kvh_A Zinc finger and BTB dom 23.5 26 0.00089 14.4 0.7 11 71-81 5-15 (27)
237 2m0e_A Zinc finger and BTB dom 23.0 31 0.001 14.1 0.9 9 36-44 4-12 (29)
238 2epq_A POZ-, at HOOK-, and zin 22.9 73 0.0025 15.0 4.0 15 33-47 9-23 (45)
239 2dj7_A Actin-binding LIM prote 22.7 22 0.00076 20.5 0.4 12 34-45 15-26 (80)
240 1x63_A Skeletal muscle LIM-pro 22.6 40 0.0014 19.1 1.6 32 34-65 43-75 (82)
241 2l3k_A Rhombotin-2, linker, LI 22.6 37 0.0013 21.2 1.5 34 33-66 35-70 (123)
242 2cot_A Zinc finger protein 435 22.5 1E+02 0.0035 16.6 4.6 38 32-80 16-57 (77)
243 1paa_A Yeast transcription fac 22.3 34 0.0012 14.3 1.0 11 35-45 3-13 (30)
244 3kqi_A GRC5, PHD finger protei 22.2 30 0.001 19.8 0.9 45 34-79 10-62 (75)
245 1p7a_A BF3, BKLF, kruppel-like 22.2 34 0.0012 15.4 1.0 14 33-46 10-23 (37)
246 1wee_A PHD finger family prote 22.0 9.2 0.00031 21.9 -1.4 48 31-79 13-67 (72)
247 1rik_A E6APC1 peptide; E6-bind 21.9 27 0.00094 14.5 0.6 11 35-45 3-13 (29)
248 2iyb_E Testin, TESS, TES; LIM 21.7 28 0.00097 18.9 0.7 30 33-62 31-62 (65)
249 2m0f_A Zinc finger and BTB dom 21.6 24 0.0008 14.6 0.3 11 35-45 3-13 (29)
250 1iml_A CRIP, cysteine rich int 21.6 38 0.0013 19.0 1.3 44 33-79 26-71 (76)
251 3a43_A HYPD, hydrogenase nicke 21.5 67 0.0023 20.8 2.6 20 2-21 39-58 (139)
252 1loi_A Cyclic 3',5'-AMP specif 21.3 6.7 0.00023 17.5 -1.6 11 55-65 6-16 (26)
253 2elq_A Zinc finger protein 406 21.3 47 0.0016 14.7 1.5 11 35-45 10-20 (36)
254 2lcq_A Putative toxin VAPC6; P 20.7 39 0.0013 22.3 1.4 10 71-80 150-159 (165)
255 2elt_A Zinc finger protein 406 20.4 52 0.0018 14.5 1.5 10 71-80 11-20 (36)
256 2dlo_A Thyroid receptor-intera 20.3 65 0.0022 18.1 2.2 32 34-65 41-74 (81)
257 2e5r_A Dystrobrevin alpha; ZZ 20.3 89 0.003 17.3 2.7 31 34-64 11-45 (63)
258 3f6q_B LIM and senescent cell 20.2 36 0.0012 18.6 1.0 10 36-45 13-22 (72)
No 1
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.87 E-value=1.4e-23 Score=138.62 Aligned_cols=109 Identities=32% Similarity=0.700 Sum_probs=83.2
Q ss_pred CCCCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHh
Q psy18180 26 SNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY 105 (143)
Q Consensus 26 ~~~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 105 (143)
..+....+++.|+||++.+.+|++++|||+||..||.+|+..+...||.||..+..+.......+..+|..+.+++++++
T Consensus 7 ~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 7 KDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp TTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred ccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 34566778999999999999999999999999999999998767789999999875322223456778999999999999
Q ss_pred hhHHhhhhcCCchhHHhhhccccccccccCC
Q psy18180 106 KKEVDQKLFDQDDGVWENYHQHISTYLLTAP 136 (143)
Q Consensus 106 ~~~~~~~~~~~e~~~~~~~~~~i~~~~~s~p 136 (143)
+.+.+.+..+.+.+++.+.+++. ..+|.|
T Consensus 87 p~~~~~r~~~~e~e~~~~~~~p~--~~~s~P 115 (115)
T 3l11_A 87 PRECKLRASGQESEEVADDYQPV--RLLSKP 115 (115)
T ss_dssp HHHHHHHHHC---------CCSC--CCSCC-
T ss_pred CHHHHHHHhhhhHHHHHHhhCCc--eeccCC
Confidence 99999999999998888888877 455654
No 2
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.81 E-value=2.8e-21 Score=129.23 Aligned_cols=74 Identities=26% Similarity=0.693 Sum_probs=64.9
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhHHhh
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQ 111 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 111 (143)
.+++.|+||++.|.+|++++|||+||..||..|+..+...||.||..+.. ...+..|..+.++++.++|.....
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~~~~n~~l~~~i~~~~p~~~~~ 123 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR------SYAMQVNQPLQTVLNQLFPGYGNG 123 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT------TCCCCCCHHHHHHHHHHSTTTTTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC------CCCCCCCHHHHHHHHHHccccccc
Confidence 46789999999999999999999999999999998666689999999973 356788999999999999976543
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.77 E-value=2e-19 Score=110.78 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=58.9
Q ss_pred CCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhh
Q psy18180 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK 106 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 106 (143)
...+++.|+||+++|.+|++++|||+||..||.+|+..+...||.||..+.. ..+..|..+.++++.+..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~-------~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-------AGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-------CCCEECTTTHHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh-------hhCccCHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999998766779999999873 355667777777777764
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.76 E-value=6.6e-19 Score=111.67 Aligned_cols=75 Identities=23% Similarity=0.633 Sum_probs=62.0
Q ss_pred CCCCCCccccccccccccCcEEcc-CCChhHHHHHHHHhhc-CCCcccccccccchhccccCCCCchhhHHHHHHHHHHh
Q psy18180 28 NTLTPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDN-SNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY 105 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~pv~l~-CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 105 (143)
.....+++.|+||+++|.+|++++ |||+||..||..|+.. +...||.||..+.. ...+..|..+.++++.+.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~------~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS------PDALIANKFLRQAVNNFK 80 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC------TTSCEECHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC------ccccCcCHHHHHHHHHHH
Confidence 345567899999999999999999 9999999999999974 34679999999742 346778888888888886
Q ss_pred hhH
Q psy18180 106 KKE 108 (143)
Q Consensus 106 ~~~ 108 (143)
...
T Consensus 81 ~~~ 83 (92)
T 3ztg_A 81 NET 83 (92)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.74 E-value=3.2e-18 Score=107.31 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhH
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKE 108 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 108 (143)
....+++.||||+++|.+||+++|||+||+.||.+|+... ..||.|+..+.. ..+..|..|.++|+.+....
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~~-------~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-PTDPFNRQMLTE-------SMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCG-------GGCEECHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-CCCCCCcCCCCh-------HhcchHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999999999864 569999999873 46778899999999887654
Q ss_pred H
Q psy18180 109 V 109 (143)
Q Consensus 109 ~ 109 (143)
.
T Consensus 81 ~ 81 (85)
T 2kr4_A 81 Q 81 (85)
T ss_dssp H
T ss_pred h
Confidence 4
No 6
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.72 E-value=2.4e-18 Score=118.58 Aligned_cols=73 Identities=29% Similarity=0.714 Sum_probs=63.7
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhHHh
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVD 110 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 110 (143)
.+++.|+||++.|.+|++++|||+||..||..|+..+...||.||..+.. ...+..|..+.++++.+++....
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~l~~n~~l~~lv~~~~p~~~~ 148 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ------NYIMIPNEILQTLLDLFFPGYSK 148 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT------TCCCCBCHHHHHHHHHHSTTTTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC------CCCCCCCHHHHHHHHHHhhHhhc
Confidence 45789999999999999999999999999999999776679999999984 23677889999999999986544
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.72 E-value=6.1e-18 Score=109.08 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=62.0
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 107 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 107 (143)
....+++.||||+++|.+||+++|||+||+.||.+|+.. ...||.|+..+. ...+..|..|.+.|+.+...
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-------~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLT-------ESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCC-------TTSSEECHHHHHHHHHHHHT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCC-------hhhceECHHHHHHHHHHHHH
Confidence 344678999999999999999999999999999999985 457999999987 35778899999999988754
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.72 E-value=1e-17 Score=107.59 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=62.3
Q ss_pred CCCCCccccccccccccCcEEccCC-ChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 107 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 107 (143)
....++|.||||+++|.+||+++|| |+||+.||.+|+... ..||.|+..+. ...+..|..|.+.|+.+...
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~-~~cP~~~~~l~-------~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLT-------MDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCC-------TTTSEECHHHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC-CCCCCCCCCCC-------hhhceEcHHHHHHHHHHHHH
Confidence 3456799999999999999999999 999999999999864 56999999987 34777899999999988764
Q ss_pred H
Q psy18180 108 E 108 (143)
Q Consensus 108 ~ 108 (143)
.
T Consensus 89 ~ 89 (98)
T 1wgm_A 89 R 89 (98)
T ss_dssp S
T ss_pred c
Confidence 3
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.71 E-value=4.3e-18 Score=115.68 Aligned_cols=65 Identities=25% Similarity=0.749 Sum_probs=51.2
Q ss_pred CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHH
Q psy18180 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK 103 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~ 103 (143)
+++.|+||++.|.+|++++|||+||..||..|+... ..||.||+.+... ..+..++..+..++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~-----~~~~~~~~~i~~~~~~ 116 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK-----TYSLVLDNCINKMVNN 116 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE-----EECHHHHHHHHHHHTT
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC-----CCccchhHHHHHHHHH
Confidence 478999999999999999999999999999999865 4699999998731 1244555555555443
No 10
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-17 Score=104.88 Aligned_cols=70 Identities=24% Similarity=0.480 Sum_probs=59.2
Q ss_pred CCCccccccccccccCcEEcc-CCChhHHHHHHHHhhcC-----CCcccc--cccc-cchhccccCCCCchhhHHHHHHH
Q psy18180 31 TPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-----NLSCPM--CRKR-LSIWLRRNKDFSLLIDENLWNQI 101 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l~-CgH~fC~~Ci~~~~~~~-----~~~CP~--Cr~~-~~~~~~~~~~~~~~~~~~l~~~i 101 (143)
..+++.||||+++|.+||+++ |||+||+.||..|+..+ ...||. |+.. +. ..++..|..|..+|
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-------~~~L~pn~~L~~~I 76 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-------KSDLIQDEALRRAI 76 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-------GGGEEECHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-------HhhCcCCHHHHHHH
Confidence 456899999999999999996 99999999999999853 457999 8876 55 34778899999999
Q ss_pred HHHhhh
Q psy18180 102 QKYYKK 107 (143)
Q Consensus 102 ~~~~~~ 107 (143)
+.+...
T Consensus 77 ~~~~~~ 82 (94)
T 2yu4_A 77 ENHNKK 82 (94)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 988654
No 11
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.67 E-value=2e-17 Score=115.36 Aligned_cols=73 Identities=29% Similarity=0.585 Sum_probs=60.4
Q ss_pred CCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhH
Q psy18180 30 LTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKE 108 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 108 (143)
...+++.|+||++.|.+|+++ +|||+||..||..|+..+...||.||..+.. ...+..|..+.+++..+++..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~------~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS------KRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS------GGGEEECHHHHHHHHHHC---
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC------cccCCcCHHHHHHHHHHHcch
Confidence 345678999999999999988 9999999999999999766779999999863 345677888999999887753
No 12
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.66 E-value=7.8e-17 Score=105.04 Aligned_cols=73 Identities=22% Similarity=0.547 Sum_probs=59.9
Q ss_pred CCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhH
Q psy18180 32 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKE 108 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 108 (143)
.+++.|+||++.+.+|+++ +|||+||..||..|+..+ ..||.||..+.. ......+..|..+.++++.+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~---~~~~~~l~~n~~l~~~i~~~~~~~ 86 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHK---TRPLLNIRSDKTLQDIVYKLVPGL 86 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCS---SCGGGGEEECHHHHHHHHHHSTTH
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccc---cCcccccCcCHHHHHHHHHHhhhH
Confidence 4589999999999999998 999999999999999865 569999999873 111125667888999999888753
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.66 E-value=2.4e-17 Score=106.21 Aligned_cols=50 Identities=24% Similarity=0.671 Sum_probs=45.4
Q ss_pred CCccccccccccccCcEE-ccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 32 PDSVLCLVCQGILIKPIK-LPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+++.|+||++.|.+|++ ++|||+||..||.+|+......||.||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 348999999999999999 89999999999999999765679999999874
No 14
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.64 E-value=2.1e-16 Score=117.80 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 107 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 107 (143)
....+.+.||||.++|.+||+++|||+||+.||.+|+..++..||.|+..+. ...+..|..|.+.|+.+...
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~-------~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT-------QEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC-------GGGCEECHHHHHHHHHHHTT
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc-------hhcCcccHHHHHHHHHHHHH
Confidence 3455789999999999999999999999999999999865556999999987 34677899999999988754
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.8e-17 Score=99.60 Aligned_cols=51 Identities=18% Similarity=0.509 Sum_probs=45.3
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
....+.+.|+||++.+.+|++++|||+||..|+.+|+... ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-PRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-CcCCCcCcccc
Confidence 4455688999999999999999999999999999999864 46999999986
No 16
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=102.39 Aligned_cols=68 Identities=18% Similarity=0.396 Sum_probs=56.6
Q ss_pred CCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180 32 PDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 107 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 107 (143)
.+++.|+||++.+.+|+++ +|||+||..|+.+|+..+ ..||.||..+.. ..+..|..+.++++.+...
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~-------~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTE-------PDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCG-------GGCEECHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCCh-------hhCCcCHHHHHHHHHHHHH
Confidence 3478999999999999998 899999999999999864 469999999873 3566677787877777543
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.64 E-value=5.8e-18 Score=104.26 Aligned_cols=53 Identities=28% Similarity=0.731 Sum_probs=46.7
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcC------CCcccccccccch
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS------NLSCPMCRKRLSI 81 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~------~~~CP~Cr~~~~~ 81 (143)
....+++.|+||++.+.+|++++|||+||..|+.+|+... ...||.||..+..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4456789999999999999999999999999999999852 5679999999873
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=94.31 Aligned_cols=52 Identities=23% Similarity=0.627 Sum_probs=46.6
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
....+++.|+||++.+.+|+.++|||+||..|+.+|+..+...||.||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 4456789999999999999999999999999999999755667999999887
No 19
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.63 E-value=3.3e-16 Score=110.38 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=61.3
Q ss_pred CCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 107 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 107 (143)
...+.+.||||+++|.+||+++|||+||+.||..|+..++..||.|+..+.. ..+..|..|.++++.+...
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-------~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-------DQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-------GGCEECHHHHHHHHHHHHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-------hhCcchHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999998644469999999873 4677889999999988643
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=94.25 Aligned_cols=52 Identities=31% Similarity=0.910 Sum_probs=46.1
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhh--cCCCcccccccccc
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD--NSNLSCPMCRKRLS 80 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~ 80 (143)
....+++.|+||++.+.+|+.++|||+||..|+..|+. .+...||.||+.+.
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 44567899999999999999999999999999999997 34567999999887
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=95.29 Aligned_cols=53 Identities=30% Similarity=0.825 Sum_probs=46.1
Q ss_pred CCCCCCccccccccccccCcEEcc-CCChhHHHHHHHHhhcC-CCcccccccccc
Q psy18180 28 NTLTPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-NLSCPMCRKRLS 80 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~pv~l~-CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 80 (143)
.....+++.|+||++.|.+|++++ |||+||..||.+|+... ...||.||+.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 344567899999999999999999 99999999999999853 357999999865
No 22
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.61 E-value=2.7e-16 Score=104.05 Aligned_cols=70 Identities=20% Similarity=0.416 Sum_probs=56.0
Q ss_pred CCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180 28 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY 104 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 104 (143)
.....+++.|+||++.+.+|++++|||+||..||..|+..+...||.||..+.. ..+..+..+.+.+..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-------~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-------NQLFPDNFAKREILSL 81 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-------GGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-------HhcccCHHHHHHHccc
Confidence 345677899999999999999999999999999999998766579999999873 2344555555555544
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.4e-16 Score=90.69 Aligned_cols=48 Identities=33% Similarity=0.958 Sum_probs=42.1
Q ss_pred CCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhc--CCCccccc
Q psy18180 28 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN--SNLSCPMC 75 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~--~~~~CP~C 75 (143)
.....+++.|+||++.+.+|++++|||+||..||.+|+.. +...||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456678999999999999999999999999999999984 45679988
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=8.3e-17 Score=100.07 Aligned_cols=53 Identities=26% Similarity=0.751 Sum_probs=46.7
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcC-----CCcccccccccch
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-----NLSCPMCRKRLSI 81 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~ 81 (143)
....+++.|+||++.+.+|+.++|||+||..|+..|+... ...||.||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4456789999999999999999999999999999999862 5679999999873
No 25
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.6e-16 Score=94.02 Aligned_cols=54 Identities=24% Similarity=0.641 Sum_probs=47.4
Q ss_pred CCCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 27 NNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 27 ~~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
......+++.|+||++.+.+|+.++|||.||..|+.+|+..+ ..||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 8 NTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE 61 (71)
T ss_dssp CCCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred CcccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence 345567789999999999999999999999999999999865 569999999874
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.5e-16 Score=92.88 Aligned_cols=53 Identities=28% Similarity=0.625 Sum_probs=46.3
Q ss_pred CCCCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 28 NTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
....++++.|+||++.+.+|+++ +|||+||..||.+|+... ..||.||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 62 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCc
Confidence 34456789999999999999997 999999999999999764 469999999874
No 27
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.58 E-value=4.5e-16 Score=102.85 Aligned_cols=65 Identities=29% Similarity=0.522 Sum_probs=54.9
Q ss_pred CccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhh
Q psy18180 33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK 107 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 107 (143)
+++.|+||++.|.+|+++ +|||+||..||..|+. ..||.||..+. ...+..|..+.+++..+...
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-------~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW-------IQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS-------CSSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc-------cccccccHHHHHHHHHHHHH
Confidence 479999999999999999 9999999999999987 56999999986 34666777777777766443
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.58 E-value=3.2e-15 Score=97.62 Aligned_cols=48 Identities=21% Similarity=0.771 Sum_probs=43.5
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHhhcC--CCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 81 (143)
.+.|+||++.+.+|++++|||+||..|+..|+..+ ...||.||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 78999999999999999999999999999999853 3579999999874
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-16 Score=99.08 Aligned_cols=53 Identities=30% Similarity=0.740 Sum_probs=46.5
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhc-----CCCcccccccccch
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN-----SNLSCPMCRKRLSI 81 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 81 (143)
....+++.|+||++.+.+|+.++|||+||..|+..|+.. +...||.||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 445678999999999999999999999999999999875 35679999999873
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=93.85 Aligned_cols=54 Identities=28% Similarity=0.719 Sum_probs=47.1
Q ss_pred CCCCCCccccccccccccC----cEEccCCChhHHHHHHHHhhcC--CCcccccccccch
Q psy18180 28 NTLTPDSVLCLVCQGILIK----PIKLPCNHHVCLECLQRICDNS--NLSCPMCRKRLSI 81 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~----pv~l~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 81 (143)
.....+.+.|+||++.|.+ |+.++|||+||..|+.+|+... ...||.||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4456678999999999998 9999999999999999999864 4679999998863
No 31
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.56 E-value=1.5e-15 Score=100.06 Aligned_cols=50 Identities=30% Similarity=0.671 Sum_probs=45.5
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+++.|+||++.+.+|++++|||+||..||.+|+...+..||.||..+..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45789999999999999999999999999999998755679999999874
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.56 E-value=1.3e-15 Score=90.41 Aligned_cols=48 Identities=25% Similarity=0.592 Sum_probs=42.8
Q ss_pred Cccccccccc-cccCc----EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQG-ILIKP----IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~-~~~~p----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
+++.|+||++ .+.+| +.++|||+||..|+.+|+..+...||.||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4689999999 99998 467999999999999998766677999999987
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-15 Score=86.18 Aligned_cols=48 Identities=27% Similarity=0.758 Sum_probs=41.5
Q ss_pred CCCCCCccccccccccccCcEEccCCChhHHHHHHHHhhc--CCCccccc
Q psy18180 28 NTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN--SNLSCPMC 75 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~--~~~~CP~C 75 (143)
.....+++.|+||++.+.+|+.++|||+||..||.+|+.. ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3445678899999999999999999999999999999764 45679987
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=1.7e-15 Score=91.22 Aligned_cols=51 Identities=29% Similarity=0.726 Sum_probs=44.8
Q ss_pred CCCCccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 30 LTPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
...+++.|+||++.+.+| +.++|||+||..|+.+|+.... .||.||+.+..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccCh
Confidence 345688999999999988 8889999999999999998654 69999999873
No 35
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-15 Score=89.31 Aligned_cols=53 Identities=26% Similarity=0.667 Sum_probs=45.6
Q ss_pred CCCCCCCccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 27 NNTLTPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 27 ~~~~~~~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
......+++.|+||++.+.+| +.++|||.||..|+.+|+... ..||+||+.+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 67 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-SSCTTTCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-CCCCCCCCccC
Confidence 344566789999999999987 888999999999999999874 46999999875
No 36
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.52 E-value=2.4e-15 Score=102.46 Aligned_cols=51 Identities=25% Similarity=0.614 Sum_probs=46.2
Q ss_pred CCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 30 LTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
..++++.|+||++++.+|++++|||+||..||.+|+..+...||.||..+.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 456789999999999999999999999999999999877667999999764
No 37
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.51 E-value=5.6e-15 Score=103.38 Aligned_cols=69 Identities=20% Similarity=0.412 Sum_probs=54.7
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY 104 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 104 (143)
....+++.|+||++++.+|++++|||+||..|+.+|+..+...||.||..+.. ..+..+..+.+.+..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-------~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-------NQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-------GGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-------hhhhhhHHHHHHHhhc
Confidence 45677899999999999999999999999999999998655579999999873 2233445555555443
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.50 E-value=1.3e-14 Score=89.27 Aligned_cols=52 Identities=33% Similarity=0.623 Sum_probs=43.5
Q ss_pred CCCCcccccccccccc--CcEEcc--CCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 30 LTPDSVLCLVCQGILI--KPIKLP--CNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~--~pv~l~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
..++++.||||++.+. ++..++ |||+||..|+.+++..+...||.||+.+..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3567899999999885 455555 999999999999987666789999999874
No 39
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.6e-14 Score=103.04 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=68.8
Q ss_pred HHHHHHHHhhcccccccc-------cCCCCCCCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhc-CCCcccc--
Q psy18180 6 VFRDVSLLLVNSKMDNED-------CNSNNTLTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDN-SNLSCPM-- 74 (143)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~-~~~~CP~-- 74 (143)
.|+.+.-.+.+....-++ ..-.......++.||||+++|.+||+. .|||+||+.||.+|+.. +...||.
T Consensus 146 ~lk~~~~i~~~P~~~lPd~~~~~dDDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtG 225 (267)
T 3htk_C 146 ILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAA 225 (267)
T ss_dssp HHHHHHHHHHCTTBCCCCCSSTTCSSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGG
T ss_pred HHHHccccccCCCCCCCCCCCCCCCccceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCccc
Confidence 455555555554432221 111233456789999999999999985 99999999999999985 3467999
Q ss_pred cccccchhccccCCCCchhhHHHHHHHHHHhh
Q psy18180 75 CRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK 106 (143)
Q Consensus 75 Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 106 (143)
|++.+. ..++..|..|..+++.+..
T Consensus 226 Cr~~l~-------~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 226 CSQVVS-------MRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp CSCEEC-------GGGEEECHHHHHHHHHHHH
T ss_pred ccCcCc-------hhhCCcCHHHHHHHHHHHH
Confidence 999887 3477788888888877643
No 40
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.48 E-value=8.6e-15 Score=92.59 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=43.2
Q ss_pred CCCCccccccccccccC---cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 30 LTPDSVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~---pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
...++..|+||++.|.. ++.++|||.||..||..|+.... .||+||+.+.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCC
Confidence 34567899999999886 77789999999999999998654 6999999876
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=9.6e-15 Score=86.03 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=42.4
Q ss_pred CccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 33 DSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 33 ~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
+++.|+||++.+.+| +.++|||.||..|+.+|+... ..||.||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCc
Confidence 478999999999887 788999999999999999874 469999999873
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=4e-14 Score=84.80 Aligned_cols=52 Identities=27% Similarity=0.592 Sum_probs=43.4
Q ss_pred CCCCCcccccccccccc---CcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 29 TLTPDSVLCLVCQGILI---KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~---~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
....++..|+||++.+. .++.++|||.||..|+.+|+..+. .||+||+.+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccC
Confidence 34556789999999885 457789999999999999998755 59999999873
No 43
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.46 E-value=2.5e-14 Score=81.92 Aligned_cols=48 Identities=33% Similarity=0.681 Sum_probs=41.4
Q ss_pred CCccccccccccccC---cEEcc-CCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 32 PDSVLCLVCQGILIK---PIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~---pv~l~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
+++..|+||++.+.+ ++.++ |||.||..|+.+|+..+ ..||.||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 457899999999987 77786 99999999999999865 46999998764
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=6.3e-15 Score=85.12 Aligned_cols=46 Identities=30% Similarity=0.738 Sum_probs=40.9
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+++.|+||++.+.+|++++|||+||..|+..| ...||.||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 468899999999999999999999999999873 4569999999874
No 45
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=2.5e-14 Score=81.89 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=41.1
Q ss_pred CccccccccccccC----cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIK----PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~----pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
++..|+||++.+.+ ++.++|||.||..|+.+|+..+ ..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46799999999865 7778999999999999999876 56999998874
No 46
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=3e-14 Score=87.34 Aligned_cols=53 Identities=30% Similarity=0.565 Sum_probs=44.3
Q ss_pred CCCCCCccccccccccccCc---EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 28 NTLTPDSVLCLVCQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~p---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.....+++.|+||++.|.++ +.++|||.||..||.+|+... ..||+||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTG 64 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCC
Confidence 34456688999999999865 456999999999999999865 469999999874
No 47
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.6e-14 Score=85.89 Aligned_cols=51 Identities=27% Similarity=0.737 Sum_probs=44.3
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
....+++.|+||++.+.+ +.++|||.||..|+.+|+.. ...||.||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccC
Confidence 345668899999999999 88999999999999999985 4569999998873
No 48
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.44 E-value=2.7e-14 Score=85.31 Aligned_cols=49 Identities=24% Similarity=0.641 Sum_probs=42.6
Q ss_pred CCccccccccccccCc-EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 32 PDSVLCLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.++..|+||++.+.+| +.++|||.||..|+.+|+..+. .||.||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHh
Confidence 3467999999999997 6789999999999999998654 69999998874
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.3e-14 Score=85.69 Aligned_cols=50 Identities=28% Similarity=0.701 Sum_probs=43.1
Q ss_pred CCCCccccccccccccCc---EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 30 LTPDSVLCLVCQGILIKP---IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~p---v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
...++..|+||++.+..+ +.++|||.||..||.+|+..+. .||+||+.+.
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~ 71 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSG 71 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCC
Confidence 345678999999999877 6679999999999999998754 6999999886
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9e-14 Score=84.36 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=43.4
Q ss_pred CCCCCccccccccccccCcEEc---cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
....++..|+||++.+.++..+ +|||.||..||.+|+.... .||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccc
Confidence 3445678999999999866544 9999999999999998755 69999999874
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.39 E-value=8.5e-14 Score=93.00 Aligned_cols=49 Identities=31% Similarity=0.770 Sum_probs=44.0
Q ss_pred CCccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 32 PDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+++.|+||++.|.+| +.++|||+||..||.+|+..+. .||.||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCcc
Confidence 4579999999999998 8899999999999999998654 69999999874
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.36 E-value=3.2e-13 Score=88.46 Aligned_cols=48 Identities=27% Similarity=0.567 Sum_probs=40.2
Q ss_pred ccccccccccccCcE------------------EccCCChhHHHHHHHHhhc----CCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPI------------------KLPCNHHVCLECLQRICDN----SNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv------------------~l~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~ 81 (143)
+..|+||++.|.+|. .++|||.||..||..|+.. ....||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 569999999997664 6799999999999999952 34579999998864
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.35 E-value=1.6e-13 Score=83.53 Aligned_cols=44 Identities=30% Similarity=0.813 Sum_probs=40.1
Q ss_pred CccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180 33 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
+++.|+||++.+.+|+.++|||. ||..|+..| ..||.||+.+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 37899999999999999999999 999999988 469999999874
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=79.70 Aligned_cols=48 Identities=21% Similarity=0.596 Sum_probs=40.2
Q ss_pred CCccccccccccccC--------------cEEc-cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 32 PDSVLCLVCQGILIK--------------PIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~--------------pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
.++..|+||++.|.+ ++.+ +|||.||..||.+|+..+. .||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcc
Confidence 356789999999876 4555 5999999999999998765 6999999876
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.28 E-value=2.7e-12 Score=99.87 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=43.4
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
...|+||++.+.+|+.++|||.||..|+..|+......||.||..+..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 479999999999999999999999999999998555679999999874
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.25 E-value=1.8e-12 Score=76.67 Aligned_cols=49 Identities=22% Similarity=0.623 Sum_probs=42.8
Q ss_pred CCCccccccccccccCcEEc--cCCCh-hHHHHHHHHhhcCCCcccccccccc
Q psy18180 31 TPDSVLCLVCQGILIKPIKL--PCNHH-VCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l--~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
..++..|+||++.+.+++.+ ||||. ||..|+.+|+..+ ..||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchh
Confidence 34577999999999999987 99999 8999999998754 45999999886
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.4e-12 Score=77.73 Aligned_cols=44 Identities=30% Similarity=0.813 Sum_probs=38.8
Q ss_pred CccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180 33 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
+++.|+||++.+.+|+.++|||. ||..|+.+. ..||.||..+..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 36799999999999999999999 999999753 469999999873
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=5e-12 Score=84.29 Aligned_cols=50 Identities=30% Similarity=0.747 Sum_probs=43.9
Q ss_pred CCCccccccccccccCc-------EEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 31 TPDSVLCLVCQGILIKP-------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~p-------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
..+.+.|+||++.+.++ +.++|||.||..|+.+|+.... .||.||..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCCh
Confidence 45688999999999887 8889999999999999998754 69999999873
No 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.18 E-value=6.2e-12 Score=77.40 Aligned_cols=43 Identities=37% Similarity=0.905 Sum_probs=39.3
Q ss_pred ccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
+..|+||++.+.+++.+||||. ||..|+..|. .||.||..+..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 6799999999999999999999 9999998763 69999999875
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.18 E-value=7.2e-12 Score=73.84 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=41.9
Q ss_pred CccccccccccccCcEEc--cCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180 33 DSVLCLVCQGILIKPIKL--PCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l--~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+..|+||++.+.+++.+ ||||. ||..|+.+|+..+ ..||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 356899999999999887 99998 9999999998765 469999998863
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.16 E-value=1.9e-11 Score=79.27 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=39.5
Q ss_pred CccccccccccccCc------------------EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIKP------------------IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~p------------------v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
++..|+||++.|.++ +.++|||.||..||.+|+... ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-CcCcCCCCcce
Confidence 466899999998865 346899999999999999874 46999999865
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.6e-11 Score=77.83 Aligned_cols=46 Identities=28% Similarity=0.606 Sum_probs=39.0
Q ss_pred CccccccccccccCcEEc---cCCChhHHHHHHHHhhc-------CCCcccc--cccc
Q psy18180 33 DSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICDN-------SNLSCPM--CRKR 78 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~ 78 (143)
+.+.|+||++.+..|..+ +|||.||..|+..++.. ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 478999999999988654 79999999999999862 2357999 9988
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.08 E-value=3.1e-11 Score=70.67 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=42.1
Q ss_pred ccccccccccccCcEEc-cCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+.|+|+++++.+||.+ ++||+|++.||.+|+..++ .||..+..+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCCh
Confidence 58999999999999999 8999999999999998655 49999998874
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.4e-11 Score=71.11 Aligned_cols=46 Identities=35% Similarity=0.803 Sum_probs=40.1
Q ss_pred CCCccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180 31 TPDSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
..++..|+||++...+++.+||||. ||..|+... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF-----QQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC-----SSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC-----CCCCCCCcchhc
Confidence 3457899999999999999999999 999999852 469999999874
No 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.1e-10 Score=70.63 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=42.7
Q ss_pred CCCCcccccccccccc--CcEEccCC-----ChhHHHHHHHHhhcC-CCcccccccccch
Q psy18180 30 LTPDSVLCLVCQGILI--KPIKLPCN-----HHVCLECLQRICDNS-NLSCPMCRKRLSI 81 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~--~pv~l~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 81 (143)
...++..|.||++.+. +++.+||. |.|+..||.+|+... ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3455679999998774 67888996 999999999999854 3679999999874
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.99 E-value=5.9e-11 Score=91.45 Aligned_cols=44 Identities=32% Similarity=0.802 Sum_probs=40.1
Q ss_pred CccccccccccccCcEEccCCCh-hHHHHHHHHhhcCCCcccccccccch
Q psy18180 33 DSVLCLVCQGILIKPIKLPCNHH-VCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
+++.|+||++.+.+|+.+||||. ||..|+..| ..||.||..+..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 57899999999999999999999 999999987 469999999873
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.93 E-value=1.1e-10 Score=76.77 Aligned_cols=47 Identities=19% Similarity=0.529 Sum_probs=0.8
Q ss_pred CccccccccccccCc-----------------EE-ccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIKP-----------------IK-LPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~p-----------------v~-l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
++-.|+||++.|.++ +. ++|+|.||..||.+|+.... .||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeee
Confidence 346899999998763 22 48999999999999998754 5999999865
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=3.3e-08 Score=59.77 Aligned_cols=51 Identities=20% Similarity=0.581 Sum_probs=41.0
Q ss_pred CCCCccccccccccccCcEEc-cCCChhHHHHHHHHhhcC-CCcccccccccc
Q psy18180 30 LTPDSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNS-NLSCPMCRKRLS 80 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 80 (143)
..+....|.||.+++..-..- .|+|.|+..||.+|++.. ...||.|+....
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 344567999999999854444 799999999999999854 256999998876
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=1.2e-07 Score=54.98 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=39.8
Q ss_pred CCccccccccccccCcEEccCC--C---hhHHHHHHHHhh-cCCCcccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCN--H---HVCLECLQRICD-NSNLSCPMCRKRLS 80 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~Cg--H---~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 80 (143)
++...|.||++...++..+||. + .|+..|+.+|+. +++..||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3466899999887777777865 4 799999999998 34678999998875
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.43 E-value=1.1e-07 Score=60.06 Aligned_cols=47 Identities=21% Similarity=0.498 Sum_probs=38.0
Q ss_pred ccccccccccCc-EEccCCChhHHHHHHHHhhcCCCcccccccccchh
Q psy18180 36 LCLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW 82 (143)
Q Consensus 36 ~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 82 (143)
.|++|.-.+..- ..+||.|.||.+|+..|..++...||.|+..+...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 578887766644 35699999999999999887767799999988753
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.33 E-value=1.5e-07 Score=72.01 Aligned_cols=50 Identities=22% Similarity=0.559 Sum_probs=39.2
Q ss_pred CCccccccccccccC----cEE----ccCCChhHHHHHHHHhhcCC----------Ccccccccccch
Q psy18180 32 PDSVLCLVCQGILIK----PIK----LPCNHHVCLECLQRICDNSN----------LSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~----pv~----l~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 81 (143)
+....|+||+..+.+ |.. ..|||.|+..|+.+|+.... ..||.||+.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456689999998875 322 36999999999999997311 359999999874
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.00 E-value=2.7e-06 Score=72.60 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=62.1
Q ss_pred CCCccccccccccccCcEEccCC-ChhHHHHHHHHhhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHHhhhHH
Q psy18180 31 TPDSVLCLVCQGILIKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEV 109 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 109 (143)
..++|.|||-.+++.+||+++-| ++|=+..|.+|+..+. +||.-|.++. ...+..|..|...|+.|..+..
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~-------~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLK-------LEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCC-------GGGCEECHHHHHHHHHHHHHHH
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCC-------cccccccHHHHHHHHHHHHHHH
Confidence 45699999999999999999998 6999999999998754 6999999887 3467789999999999987654
Q ss_pred h
Q psy18180 110 D 110 (143)
Q Consensus 110 ~ 110 (143)
.
T Consensus 960 ~ 960 (968)
T 3m62_A 960 E 960 (968)
T ss_dssp T
T ss_pred h
Confidence 3
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.57 E-value=2.1e-05 Score=49.74 Aligned_cols=33 Identities=30% Similarity=0.691 Sum_probs=28.1
Q ss_pred Ccccccccccc-ccCcEE--ccCCChhHHHHHHHHh
Q psy18180 33 DSVLCLVCQGI-LIKPIK--LPCNHHVCLECLQRIC 65 (143)
Q Consensus 33 ~~~~C~IC~~~-~~~pv~--l~CgH~fC~~Ci~~~~ 65 (143)
+++.|+||.+. +.+|+. +.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46899999975 678887 8999999999999843
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.52 E-value=0.00013 Score=53.31 Aligned_cols=47 Identities=21% Similarity=0.637 Sum_probs=38.9
Q ss_pred ccccccccccccCcEEc-cCCChhHHHHHHHHhhcC-CCcccccccccc
Q psy18180 34 SVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNS-NLSCPMCRKRLS 80 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 80 (143)
-..|.||.++...-+.- .|+|.|+..|+.+|+... ...||.|+...+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 56899999999865555 499999999999999743 457999998765
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.78 E-value=0.0085 Score=36.13 Aligned_cols=38 Identities=18% Similarity=0.542 Sum_probs=30.7
Q ss_pred CCCCCccccccccccccCcEEccC----CChhHHHHHHHHhh
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPC----NHHVCLECLQRICD 66 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~C----gH~fC~~Ci~~~~~ 66 (143)
......+.|.+|.+-+.+-..+.| +|.||..|-+..++
T Consensus 10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 334567899999999998766544 69999999998887
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=94.97 E-value=0.023 Score=34.88 Aligned_cols=48 Identities=21% Similarity=0.586 Sum_probs=37.8
Q ss_pred Ccccccccccccc-----CcEEc--cCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILI-----KPIKL--PCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~-----~pv~l--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
..-.|.||.+..- ++.+. .|+-..|+.|.+--.+.++..||.|...+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4569999998754 23332 688889999999888888889999998876
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.023 Score=43.85 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=48.6
Q ss_pred CCccccccccccccCcEEc-cCCChhHHHH--HHHH-hhcCCCcccccccccchhccccCCCCchhhHHHHHHHHHH
Q psy18180 32 PDSVLCLVCQGILIKPIKL-PCNHHVCLEC--LQRI-CDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKY 104 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l-~CgH~fC~~C--i~~~-~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 104 (143)
.-.+.||+-...+..|+.- .|.|.-|.+- +-.+ .......||+|.+.+. ..++.+|..+.+++...
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~-------~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA-------LENLAISEFVDDILQNC 316 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC-------GGGEEEBHHHHHHHTTS
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC-------HHHeeEcHHHHHHHHhc
Confidence 4468999999999999975 7999966432 2221 2255688999999887 45788888888776644
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.34 E-value=0.045 Score=42.13 Aligned_cols=66 Identities=21% Similarity=0.481 Sum_probs=48.3
Q ss_pred CCCccccccccccccCcEEc-cCCChhHHHH--HHHHh-hcCCCcccccccccchhccccCCCCchhhHHHHHHHHH
Q psy18180 31 TPDSVLCLVCQGILIKPIKL-PCNHHVCLEC--LQRIC-DNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQK 103 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l-~CgH~fC~~C--i~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~l~~~i~~ 103 (143)
..-.+.||+-...+..|+.- .|.|.-|.+- +-.+. ......||+|.+.+. ..++.+|..+.+++..
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~-------~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA-------YESLILDGLFMEILND 281 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC-------GGGEEEBHHHHHHHTT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC-------HHHeEEcHHHHHHHHh
Confidence 34477999999999999975 8999966432 12221 245688999999887 4578888888877754
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.94 E-value=0.03 Score=34.74 Aligned_cols=45 Identities=33% Similarity=0.675 Sum_probs=34.4
Q ss_pred ccccccccccccCcEEccCC-ChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKLPCN-HHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
-+.|..|.-... -.+.|. |-+|..|+...+..+.. ||+|...+..
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~Sdr-CpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNR-CPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSE-ETTTTEECCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhhccC-CcccCCcCCc
Confidence 457888875444 345665 89999999998887654 9999998874
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.24 E-value=0.13 Score=29.19 Aligned_cols=49 Identities=31% Similarity=0.546 Sum_probs=34.2
Q ss_pred CCCCCCccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCcccccccc
Q psy18180 28 NTLTPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR 78 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 78 (143)
......+..|.+|.+. .-+.+ .|...|+..|+..-+. .+...||.|...
T Consensus 5 ~~~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 5 SYETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cccCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3345557899999973 22333 6889999999987443 456789999653
No 81
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=91.85 E-value=0.021 Score=37.28 Aligned_cols=51 Identities=18% Similarity=0.478 Sum_probs=29.8
Q ss_pred CCCCCccccccccccccCc----EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 29 TLTPDSVLCLVCQGILIKP----IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~p----v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
++..+...|..|...|.-- .--.||..||..|....... ...|-.|-..+.
T Consensus 14 ~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~~~ 68 (120)
T 1y02_A 14 SPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRFRA 68 (120)
T ss_dssp ------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHHH
T ss_pred cCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHHHh
Confidence 4555667999999887632 12379999999997665443 234888865443
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.00 E-value=0.3 Score=28.17 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=31.9
Q ss_pred ccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180 34 SVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 79 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 79 (143)
+-.|.||.+-= + +.+ .|...|+..|+...+. .+...||.|....
T Consensus 12 ~~~C~vC~~~~-~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGT-D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCT-T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCCC-e-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45799998632 2 333 6999999999976665 3567899997654
No 83
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=88.72 E-value=0.048 Score=27.42 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=11.7
Q ss_pred CccccccccccccCcE
Q psy18180 33 DSVLCLVCQGILIKPI 48 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv 48 (143)
+.|.||+|...+..+.
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4688888887777653
No 84
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=88.24 E-value=0.2 Score=29.43 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=37.5
Q ss_pred cCCCCCCCCCccccccccccc---cCcEEc--cCCChhHHHHHHHHhh-cCCCccccccccc
Q psy18180 24 CNSNNTLTPDSVLCLVCQGIL---IKPIKL--PCNHHVCLECLQRICD-NSNLSCPMCRKRL 79 (143)
Q Consensus 24 ~~~~~~~~~~~~~C~IC~~~~---~~pv~l--~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 79 (143)
+..+.+...++..|.||.+.- .+..++ .|.-.|...|+..-.. .+...||.|....
T Consensus 6 ~~~~~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 6 HHHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 67 (71)
T ss_dssp ----CCCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcC
Confidence 345677788899999998753 233443 6999999999874322 4567899996643
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.54 E-value=0.67 Score=28.11 Aligned_cols=45 Identities=22% Similarity=0.495 Sum_probs=31.4
Q ss_pred CCccccccccccccCcEEc---cCCChhHHHHHHHHhh---------------cCCCccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD---------------NSNLSCPMCRK 77 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~---------------~~~~~CP~Cr~ 77 (143)
..|-.|.||...-.. ..+ -|+-.|+..|+++.-. .....||.|..
T Consensus 13 ~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 13 VNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 357799999864433 333 4899999999999611 23468999943
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.95 E-value=0.29 Score=26.44 Aligned_cols=43 Identities=28% Similarity=0.586 Sum_probs=28.0
Q ss_pred cccccccccc-CcEEc--cCCChhHHHHHHHHhh---cCCCcccccccc
Q psy18180 36 LCLVCQGILI-KPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR 78 (143)
Q Consensus 36 ~C~IC~~~~~-~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 78 (143)
.|.||...-. +..++ .|...|+..|+..-+. .+...||.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 4778876432 22222 6888999999965443 345679999653
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.91 E-value=0.26 Score=28.98 Aligned_cols=49 Identities=14% Similarity=0.366 Sum_probs=34.0
Q ss_pred CCccccccccccccCc-EEc--cCCChhHHHHHHHHhh---cCCCcccccccccc
Q psy18180 32 PDSVLCLVCQGILIKP-IKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRLS 80 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~p-v~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 80 (143)
.+...|+||......- .+. .|...|+..|+.-... .+...||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4566899999875432 232 6888999999865443 24577999977654
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.84 E-value=0.96 Score=30.16 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=30.6
Q ss_pred CccccccccccccCcEEccCCChhHHHHHHHHh----------hcCCCccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC----------DNSNLSCPMCRK 77 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~ 77 (143)
.+..|.+|.+-=.--.--.|-.+||..|+..-+ ..+...||.|+.
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 356888888632210111799999999999654 245778999974
No 89
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=84.25 E-value=0.33 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=22.5
Q ss_pred CccccccccccccCcE----EccCCChhHHHHHHH
Q psy18180 33 DSVLCLVCQGILIKPI----KLPCNHHVCLECLQR 63 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~ 63 (143)
++-.|.+|...|.--. --.||..||..|...
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3458999998876321 127999999999754
No 90
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=83.90 E-value=0.55 Score=28.27 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=23.4
Q ss_pred CccccccccccccCcE----EccCCChhHHHHHHHH
Q psy18180 33 DSVLCLVCQGILIKPI----KLPCNHHVCLECLQRI 64 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~~ 64 (143)
+...|.+|...|.--. --.||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4558999998876321 1379999999997654
No 91
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=83.83 E-value=0.92 Score=25.59 Aligned_cols=39 Identities=33% Similarity=0.756 Sum_probs=27.1
Q ss_pred ccccccccccCcEEc---cCCChhHHHHHHHHhhcCCCccccc
Q psy18180 36 LCLVCQGILIKPIKL---PCNHHVCLECLQRICDNSNLSCPMC 75 (143)
Q Consensus 36 ~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~~~~~~CP~C 75 (143)
.|--|+..+.+.... .|++.||.+|=. ++...--.||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 588899888665433 699999999943 333333459987
No 92
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=83.20 E-value=0.76 Score=32.88 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=26.4
Q ss_pred CCCCCCccccccccccccCc----EEccCCChhHHHHHHHH
Q psy18180 28 NTLTPDSVLCLVCQGILIKP----IKLPCNHHVCLECLQRI 64 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~p----v~l~CgH~fC~~Ci~~~ 64 (143)
++...++-.|.+|...|.-- .--.||+.||..|....
T Consensus 158 ~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 158 APDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred ccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 44455667999999877622 12379999999997654
No 93
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=82.76 E-value=0.095 Score=35.54 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=31.5
Q ss_pred Ccccccccccccc---CcEE--ccCCChhHHHHHHHHhh-cCCCcccccccc
Q psy18180 33 DSVLCLVCQGILI---KPIK--LPCNHHVCLECLQRICD-NSNLSCPMCRKR 78 (143)
Q Consensus 33 ~~~~C~IC~~~~~---~pv~--l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~ 78 (143)
++-.|.+|...|. ++-. ..|.|.+|..|-. +.. .....|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5789999998764 3322 3799999999973 222 345678888664
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.15 E-value=0.38 Score=29.94 Aligned_cols=49 Identities=16% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCCCCccccccccccccCcEEc---cCCChhHHHHHHHHhh--cCCCcccccccc
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD--NSNLSCPMCRKR 78 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~ 78 (143)
+...+...| ||......-..+ .|...|+..|+..-.. ...+.||.|+..
T Consensus 23 ~~~~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 23 SYGTDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCCCCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCCCCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 334556778 898765543343 5888888888754332 235789999643
No 95
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=78.85 E-value=0.58 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=22.8
Q ss_pred ccccccccccccCcE----EccCCChhHHHHHHHH
Q psy18180 34 SVLCLVCQGILIKPI----KLPCNHHVCLECLQRI 64 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~~ 64 (143)
...|.+|...|.--. --.||..||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 457999998876321 1279999999997654
No 96
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.53 E-value=0.47 Score=30.87 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=22.6
Q ss_pred ccccccccccccCcE----EccCCChhHHHHHHHH
Q psy18180 34 SVLCLVCQGILIKPI----KLPCNHHVCLECLQRI 64 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~~ 64 (143)
...|.+|...|.--. --.||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 357999998876321 1279999999997654
No 97
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.21 E-value=0.62 Score=33.08 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=25.3
Q ss_pred CCCCCccccccccccccCc---E-EccCCChhHHHHHHHH
Q psy18180 29 TLTPDSVLCLVCQGILIKP---I-KLPCNHHVCLECLQRI 64 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~p---v-~l~CgH~fC~~Ci~~~ 64 (143)
+...++-.|.+|...|.-- . --.||+.||..|....
T Consensus 156 ~~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 156 PNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred ccCCCCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4445677999999887621 1 1279999999986643
No 98
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=78.01 E-value=0.78 Score=30.26 Aligned_cols=67 Identities=15% Similarity=0.351 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhhcccccccccCCCCCCCCCcccccccccccc---CcEE--ccCCChhHHHHHHHHhh---cCCCccccc
Q psy18180 4 KKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILI---KPIK--LPCNHHVCLECLQRICD---NSNLSCPMC 75 (143)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~---~pv~--l~CgH~fC~~Ci~~~~~---~~~~~CP~C 75 (143)
.+.++.+...+.+-+ ..+. ..++-.|.+|...|. +.-. ..|.|.+|..|-..... .....|-+|
T Consensus 33 ~~ri~kL~~~l~~~k---~~~~-----~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC 104 (134)
T 1zbd_B 33 QERIGRLVDRLETMR---KNVA-----GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKIC 104 (134)
T ss_dssp HHHHHHHHHHHHHHH---HTCC-----SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHH
T ss_pred HHHHHHHHHHHHHHH---HHhc-----cCCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhh
Confidence 445556666655522 1111 145779999998873 2222 37999999988653311 123568888
Q ss_pred ccc
Q psy18180 76 RKR 78 (143)
Q Consensus 76 r~~ 78 (143)
++.
T Consensus 105 ~k~ 107 (134)
T 1zbd_B 105 LEQ 107 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 99
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.07 E-value=0.26 Score=27.31 Aligned_cols=45 Identities=22% Similarity=0.589 Sum_probs=30.1
Q ss_pred CCCccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCccccccc
Q psy18180 31 TPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRK 77 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 77 (143)
..++..|.+|.+. ..+++ .|...|+..|+..-+. .+...||.|..
T Consensus 6 ~~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999974 22222 6888899999875443 34567988854
No 100
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=76.81 E-value=1.7 Score=26.42 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=35.3
Q ss_pred CCCCCcccccccccccc---CcEEc--cCCChhHHHHHHHHhh-cCCCcccccccccc
Q psy18180 29 TLTPDSVLCLVCQGILI---KPIKL--PCNHHVCLECLQRICD-NSNLSCPMCRKRLS 80 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~---~pv~l--~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 80 (143)
+...++..|.||...-. +.+++ .|.-.|...|+..-.. .+...||.|.....
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 33456789999997541 22232 6888899999875332 45678999976554
No 101
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.15 E-value=0.3 Score=27.72 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCccccccccccccC-cEEc---cCCChhHHHHHHHHhh----cCCCccccccccc
Q psy18180 32 PDSVLCLVCQGILIK-PIKL---PCNHHVCLECLQRICD----NSNLSCPMCRKRL 79 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~-pv~l---~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~ 79 (143)
.++..|++|...+.+ -..+ .|..-|+..|+.-... ...+.||.|+..-
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 457889999987742 2222 5777888888753222 2457799997643
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=74.66 E-value=0.95 Score=27.55 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCccccccccccccCcE----EccCCChhHHHHHHHH
Q psy18180 32 PDSVLCLVCQGILIKPI----KLPCNHHVCLECLQRI 64 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~~ 64 (143)
.+...|.+|...|.--. --.||..||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 34558999998776321 1379999999997653
No 103
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.55 E-value=0.48 Score=26.76 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=31.0
Q ss_pred CCccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 79 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 79 (143)
..+..|.||.+-- -..+ .|...|+..|+..-+. .+...||.|....
T Consensus 7 ~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3467899998631 2222 6888899999875443 3566799997643
No 104
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.22 E-value=0.72 Score=27.72 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=21.7
Q ss_pred ccccccccccccCcE----EccCCChhHHHHHHH
Q psy18180 34 SVLCLVCQGILIKPI----KLPCNHHVCLECLQR 63 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv----~l~CgH~fC~~Ci~~ 63 (143)
...|.+|...|.--. --.||..||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 458999998875221 137999999999654
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.84 E-value=0.35 Score=27.57 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=33.4
Q ss_pred CCcccccccccccc---CcEEc--cCCChhHHHHHHHHh------hcCCCcccccccccc
Q psy18180 32 PDSVLCLVCQGILI---KPIKL--PCNHHVCLECLQRIC------DNSNLSCPMCRKRLS 80 (143)
Q Consensus 32 ~~~~~C~IC~~~~~---~pv~l--~CgH~fC~~Ci~~~~------~~~~~~CP~Cr~~~~ 80 (143)
.++..|.||..... ....+ .|...|+..|+..-+ ..+...||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 34778999997642 33333 699899999987533 235678999976543
No 106
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.31 E-value=1.3 Score=27.23 Aligned_cols=47 Identities=15% Similarity=0.496 Sum_probs=29.1
Q ss_pred CCccccccccccccCcEEc--c--CC-ChhHHHHHHHHhh-cCCCccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL--P--CN-HHVCLECLQRICD-NSNLSCPMCRKRL 79 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l--~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 79 (143)
.+...| ||........+. . |. ..|+..|+.--.. .+...||.|+...
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 456678 999865543222 3 55 5788888862111 3457899997654
No 107
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=73.09 E-value=0.81 Score=27.92 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=23.1
Q ss_pred ccccccccccccCc---E-EccCCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIKP---I-KLPCNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~p---v-~l~CgH~fC~~Ci~~~~ 65 (143)
...|.+|...|.-- . --.||+.||..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45799999877621 1 23799999999976543
No 108
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=72.91 E-value=1.2 Score=27.81 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=10.9
Q ss_pred hhHHHHHHHHhh
Q psy18180 55 HVCLECLQRICD 66 (143)
Q Consensus 55 ~fC~~Ci~~~~~ 66 (143)
.||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 109
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=72.85 E-value=1.2 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.9
Q ss_pred hhHHHHHHHHhh
Q psy18180 55 HVCLECLQRICD 66 (143)
Q Consensus 55 ~fC~~Ci~~~~~ 66 (143)
.||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 110
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=72.43 E-value=1.6 Score=25.15 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=25.2
Q ss_pred CCCccccccccccccCcEEccC-CChhHHHHHHHHhh
Q psy18180 31 TPDSVLCLVCQGILIKPIKLPC-NHHVCLECLQRICD 66 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l~C-gH~fC~~Ci~~~~~ 66 (143)
.++..-|.||.+.-. -.-+.| |-.||..|+.+.-.
T Consensus 5 ~ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHcc
Confidence 445667999998622 223578 78999999988754
No 111
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=72.25 E-value=3.7 Score=24.16 Aligned_cols=32 Identities=28% Similarity=0.662 Sum_probs=24.2
Q ss_pred CCccccccccccc-cCcE--EccCCChhHHHHHHH
Q psy18180 32 PDSVLCLVCQGIL-IKPI--KLPCNHHVCLECLQR 63 (143)
Q Consensus 32 ~~~~~C~IC~~~~-~~pv--~l~CgH~fC~~Ci~~ 63 (143)
..++.|.+|.+.. ..++ -+.|.-+||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3478999998754 3333 358999999999986
No 112
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=72.07 E-value=0.69 Score=31.88 Aligned_cols=46 Identities=22% Similarity=0.441 Sum_probs=31.3
Q ss_pred CccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 80 (143)
++-.|.+|.+-= + ..+ .|...|+..|+...+. .+...||.|+....
T Consensus 3 ~~~~C~~C~~~g-~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGG-E-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCS-S-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCC-e-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 356799998542 2 222 5888899999866544 35578999987543
No 113
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=71.34 E-value=0.54 Score=26.94 Aligned_cols=46 Identities=20% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 79 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 79 (143)
.++..|.||.+.- + .++ .|...|+..|+..-+. .+...||.|...-
T Consensus 6 ~~~~~C~vC~~~g-~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDGG-E-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCCS-S-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCCC-C-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 4577899998642 2 222 6888888888875433 3556799996643
No 114
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=71.07 E-value=1.9 Score=27.41 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=35.2
Q ss_pred ccccccccccccC---cEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~---pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
-|.|..|...|.+ .....=|..||..|..+.+.... .|-.|...+..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-AGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-SSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-ccccCCCCcCc
Confidence 5789999998863 33445678899999998775322 49999998873
No 115
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.99 E-value=0.31 Score=30.03 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCCCcccccccccccc-CcEEc--cCCChhHHHHHHHHhh---cCCCcccccccc
Q psy18180 29 TLTPDSVLCLVCQGILI-KPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR 78 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~-~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 78 (143)
....++..|.||...-. +..++ .|...|+..|+..-+. .+...||.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34455678999997543 22232 6888888888864333 345679999653
No 116
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=70.81 E-value=3.2 Score=27.12 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=29.0
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHh----------hcCCCccccccc
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRIC----------DNSNLSCPMCRK 77 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~ 77 (143)
+..|.+|.+-=.-..--.|-..||..|+.+.+ ..+...|+.|+.
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45688887532211111689999999998642 245678999954
No 117
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.42 E-value=1.6 Score=26.67 Aligned_cols=47 Identities=23% Similarity=0.551 Sum_probs=32.8
Q ss_pred CCCCccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCcccccccc
Q psy18180 30 LTPDSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKR 78 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 78 (143)
....+..|.+|.+-- ...+ .|.-.|...|+..-+. .+...||.|...
T Consensus 21 ~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345577999999642 2222 6888899999876554 356779999754
No 118
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=69.23 E-value=0.98 Score=31.39 Aligned_cols=47 Identities=17% Similarity=0.411 Sum_probs=31.1
Q ss_pred ccccccccccccCcE----Ec---cCCChhHHHHHHHH------hh----cCCCcccccccccc
Q psy18180 34 SVLCLVCQGILIKPI----KL---PCNHHVCLECLQRI------CD----NSNLSCPMCRKRLS 80 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv----~l---~CgH~fC~~Ci~~~------~~----~~~~~CP~Cr~~~~ 80 (143)
+..||||...+.+.- .+ .|..-|+..|+.-. +. .....||.|+....
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 346999999887542 33 58878888887321 11 12578999987654
No 119
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.02 E-value=3.4 Score=23.94 Aligned_cols=47 Identities=15% Similarity=0.496 Sum_probs=30.0
Q ss_pred CCccccccccccccCcEEc--c--CC-ChhHHHHHHHHhh-cCCCccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL--P--CN-HHVCLECLQRICD-NSNLSCPMCRKRL 79 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l--~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 79 (143)
.+...| ||........+. . |. ..|+..|+.--.. .+...||.|+...
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 456788 899865543332 4 66 5888888862111 3567899997654
No 120
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.51 E-value=2 Score=25.10 Aligned_cols=47 Identities=17% Similarity=0.516 Sum_probs=31.1
Q ss_pred CCccccccccccccCcEEc---cCCChhHHHHHHHHh--------hcCCCccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRIC--------DNSNLSCPMCRKRL 79 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~--------~~~~~~CP~Cr~~~ 79 (143)
.+.+.| ||......-..+ .|..-|+..|+.-.. ....+.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 346778 899877643333 588889999984221 13567899997654
No 121
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=68.07 E-value=1.2 Score=28.04 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=18.4
Q ss_pred CcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 46 KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 46 ~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
.+.-..||+.|+ .-+ .....||.|+..-.
T Consensus 67 p~~C~~CG~~F~-----~~~-~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEI-NIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCBCC-----CCS-SCCSSCSSSCCCCB
T ss_pred CcChhhCcCeec-----ccC-CCCCCCcCCCCCcc
Confidence 445568999992 112 22346999988654
No 122
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=67.24 E-value=0.62 Score=26.08 Aligned_cols=45 Identities=22% Similarity=0.621 Sum_probs=30.3
Q ss_pred CccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 79 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 79 (143)
.+..|.+|... ...+. .|...|+..|+..-+. .+...||.|....
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999874 22222 6888899999875443 3456799986544
No 123
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=65.89 E-value=4 Score=25.85 Aligned_cols=45 Identities=20% Similarity=0.513 Sum_probs=34.7
Q ss_pred CccccccccccccC-cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIK-PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~-pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
+-|.|..|...|.. +....=|..||..|..+.+. ..|..|...+.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCC
Confidence 45899999988875 33456788899999887543 45999999887
No 124
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=65.86 E-value=6.7 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCccccccccccccC--cEEccCCChhHHH
Q psy18180 32 PDSVLCLVCQGILIK--PIKLPCNHHVCLE 59 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~--pv~l~CgH~fC~~ 59 (143)
...-.|..|..-+.- +..-.||..||..
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred ccCccchhhCCeecccCCeEcCCCCEeccc
Confidence 345699999975553 7777899999974
No 125
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.78 E-value=0.42 Score=29.12 Aligned_cols=48 Identities=15% Similarity=0.489 Sum_probs=34.2
Q ss_pred Ccccccccccccc---CcEEc--cCCChhHHHHHHHHhh-------cCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILI---KPIKL--PCNHHVCLECLQRICD-------NSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~---~pv~l--~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~ 80 (143)
.+..|.||..--. +.+++ .|...|+..|+..-+. .+...|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3668999997643 44444 6999999999876432 45678999976544
No 126
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.27 E-value=1.4 Score=27.72 Aligned_cols=45 Identities=22% Similarity=0.453 Sum_probs=30.0
Q ss_pred CCcccccccccccc-CcEE--ccCCChhHHHHHHHHhh---cCCCcccccc
Q psy18180 32 PDSVLCLVCQGILI-KPIK--LPCNHHVCLECLQRICD---NSNLSCPMCR 76 (143)
Q Consensus 32 ~~~~~C~IC~~~~~-~pv~--l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr 76 (143)
.++..|.||.+.-. ...+ ..|+..|+..|+..... .+...||.|.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45778999986543 2222 27999999999976543 3455677764
No 127
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=65.15 E-value=1.5 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=20.2
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHhh-cCCCccccccccc
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICD-NSNLSCPMCRKRL 79 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 79 (143)
.+.|.+|.-++....--+ ..|-+ .....||.|...-
T Consensus 4 ~y~C~vCGyvyd~~~Gd~----------t~f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN----------VPFDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp CEEETTTCCEECGGGGTT----------CCGGGSCTTCBCTTTCCBG
T ss_pred EEECCCCCeEEeCCcCCC----------cchhhCCCCCcCcCCCCcH
Confidence 468999987775211111 12222 2345799998753
No 128
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=65.11 E-value=0.85 Score=32.07 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=31.4
Q ss_pred CccccccccccccCcEEc--cCCChhHHHHHHHHhh---cCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 80 (143)
.+-.|.+|.+-=. ..+ .|...|+..|+...+. .+...||.|+....
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3567999985321 222 6888999999866544 35678999987543
No 129
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=65.10 E-value=1.1 Score=27.03 Aligned_cols=29 Identities=24% Similarity=0.654 Sum_probs=20.7
Q ss_pred cccccccccc-----CcEEcc-CCChhHHHHHHHH
Q psy18180 36 LCLVCQGILI-----KPIKLP-CNHHVCLECLQRI 64 (143)
Q Consensus 36 ~C~IC~~~~~-----~pv~l~-CgH~fC~~Ci~~~ 64 (143)
-||-|...+. .+++-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4888876543 234445 9999999998877
No 130
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=65.02 E-value=3.1 Score=34.54 Aligned_cols=52 Identities=25% Similarity=0.596 Sum_probs=37.8
Q ss_pred CCCCCCccccccccccccCcE----------EccCCChh--------------------HHHHHHHHhhc-------CCC
Q psy18180 28 NTLTPDSVLCLVCQGILIKPI----------KLPCNHHV--------------------CLECLQRICDN-------SNL 70 (143)
Q Consensus 28 ~~~~~~~~~C~IC~~~~~~pv----------~l~CgH~f--------------------C~~Ci~~~~~~-------~~~ 70 (143)
.....|--.|+-|+..+.+|. .+.||-.| |..|..++-+- +..
T Consensus 11 ~~i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~ 90 (657)
T 3ttc_A 11 TQIVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPV 90 (657)
T ss_dssp -CCCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTC
T ss_pred cccCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCC
Confidence 345566779999998887762 24677664 99999998762 346
Q ss_pred ccccccccc
Q psy18180 71 SCPMCRKRL 79 (143)
Q Consensus 71 ~CP~Cr~~~ 79 (143)
.||.|.-.+
T Consensus 91 aCp~CGP~l 99 (657)
T 3ttc_A 91 ACPECGPYL 99 (657)
T ss_dssp CCTTTSCCE
T ss_pred cCcccCccc
Confidence 799998776
No 131
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=63.83 E-value=0.29 Score=30.51 Aligned_cols=42 Identities=29% Similarity=0.581 Sum_probs=27.2
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
+..||+|...+..- =++.+|..|-..+... ..||.|.+++..
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~~--a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEMK--ALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEEE--EECTTTCSBCEE
T ss_pred cccCccCCCcceec----CCEEECccccchhhcc--ccCcchhhHHHH
Confidence 38999999877621 1233477775544332 359999988763
No 132
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=63.53 E-value=0.38 Score=28.73 Aligned_cols=33 Identities=27% Similarity=0.664 Sum_probs=22.7
Q ss_pred cccccc--cccccc-----CcEEc------cCCChhHHHHHHHHhh
Q psy18180 34 SVLCLV--CQGILI-----KPIKL------PCNHHVCLECLQRICD 66 (143)
Q Consensus 34 ~~~C~I--C~~~~~-----~pv~l------~CgH~fC~~Ci~~~~~ 66 (143)
..-||- |...+. ..+.- .||+.||..|...|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 456876 776543 22343 5999999999988754
No 133
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.29 E-value=6.2 Score=23.11 Aligned_cols=50 Identities=16% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCCcccccccccccc-CcEEc---cCCChhHHHHHHHHhh----cCCCcccccccccc
Q psy18180 30 LTPDSVLCLVCQGILI-KPIKL---PCNHHVCLECLQRICD----NSNLSCPMCRKRLS 80 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~-~pv~l---~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~ 80 (143)
+..+...| ||..... .-..+ .|..-|+..|+.-... ...+.||.|+....
T Consensus 8 ~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 8 MALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34556677 8988763 22222 5888888999842221 24678999987643
No 134
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=61.81 E-value=0.18 Score=30.44 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=7.1
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 56777776554
No 135
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=61.68 E-value=5.7 Score=33.53 Aligned_cols=52 Identities=27% Similarity=0.545 Sum_probs=37.6
Q ss_pred CCCCCccccccccccccCcE----------EccCCChh--------------------HHHHHHHHhhc-------CCCc
Q psy18180 29 TLTPDSVLCLVCQGILIKPI----------KLPCNHHV--------------------CLECLQRICDN-------SNLS 71 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv----------~l~CgH~f--------------------C~~Ci~~~~~~-------~~~~ 71 (143)
....|--.|+-|+..+.+|. .+.||-.| |..|..++-+- +...
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred ccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 44556679999998887763 24677554 99999998652 3457
Q ss_pred ccccccccc
Q psy18180 72 CPMCRKRLS 80 (143)
Q Consensus 72 CP~Cr~~~~ 80 (143)
||.|.-.+.
T Consensus 186 C~~CGP~l~ 194 (761)
T 3vth_A 186 CFDCGPSLS 194 (761)
T ss_dssp CTTTSCCEE
T ss_pred CCccCCeeE
Confidence 999987765
No 136
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=61.00 E-value=1.7 Score=33.53 Aligned_cols=32 Identities=19% Similarity=0.462 Sum_probs=0.0
Q ss_pred ccccccccccccCc----EEccCCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIKP----IKLPCNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~p----v~l~CgH~fC~~Ci~~~~ 65 (143)
...|.+|...|.-- .--.||+.||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 45899999877622 123799999999987654
No 137
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=60.84 E-value=1 Score=33.83 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=31.8
Q ss_pred CCccccccccccccCcEEc----cCC--ChhHHHHHHHHhhcCCCcccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL----PCN--HHVCLECLQRICDNSNLSCPMCRKR 78 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l----~Cg--H~fC~~Ci~~~~~~~~~~CP~Cr~~ 78 (143)
+..-.||+|.....-.+.. .=| +.+|..|-..|--. ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 6778999999876544432 133 45788888888654 4469999765
No 138
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=60.65 E-value=6.1 Score=27.66 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.0
Q ss_pred Ccccccccccccc
Q psy18180 33 DSVLCLVCQGILI 45 (143)
Q Consensus 33 ~~~~C~IC~~~~~ 45 (143)
..+.|++|..++.
T Consensus 170 ~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 170 KFHLCPICGYIHK 182 (202)
T ss_dssp CEEECSSSCCEEE
T ss_pred cEEEECCCCCEEc
Confidence 3678999987765
No 139
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=59.07 E-value=4.8 Score=25.59 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=34.7
Q ss_pred Ccccccccccccc---CcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILI---KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~---~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
+-|.|..|...|. .+....=|..||..|..+.+... ..|..|...+.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~-~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD-GLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC-EECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc-cChhhcCCccC
Confidence 4689999998885 24445567889999998876421 15999988886
No 140
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.80 E-value=1.9 Score=29.23 Aligned_cols=47 Identities=15% Similarity=0.453 Sum_probs=31.0
Q ss_pred CCccccccccccccCc-EEc---cCCChhHHHHHHHHhh----cCCCccccccccc
Q psy18180 32 PDSVLCLVCQGILIKP-IKL---PCNHHVCLECLQRICD----NSNLSCPMCRKRL 79 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~p-v~l---~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~ 79 (143)
.+...| +|.....+- ..+ .|...|+..|+.-... .+...||.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 457889 999875422 122 6888899999842211 3467899998754
No 141
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.76 E-value=1.5 Score=27.70 Aligned_cols=42 Identities=19% Similarity=0.512 Sum_probs=25.8
Q ss_pred ccccccccccC--cEEc--cCCChhHHHHHHHHhh---cCCCccccccc
Q psy18180 36 LCLVCQGILIK--PIKL--PCNHHVCLECLQRICD---NSNLSCPMCRK 77 (143)
Q Consensus 36 ~C~IC~~~~~~--pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~ 77 (143)
.|.||.+.-.+ ...+ .|...|+..|+..-+. .+...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 45666653222 2222 5888888888865444 34567999874
No 142
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.75 E-value=13 Score=21.97 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=26.7
Q ss_pred CCCCCccccccccccccCcEEccCCChhHHHHHHHHhh----cCCCcccccccccch
Q psy18180 29 TLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD----NSNLSCPMCRKRLSI 81 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~ 81 (143)
....+...|++|...|..... +..-.. ...+.|+.|.+.+..
T Consensus 23 ~~~~~~h~C~~Cgk~F~~~~~-----------L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 23 SASAECHLCPVCGESFASKGA-----------QERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CCCCTTEECTTSCCEESSHHH-----------HHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCCCCEECCCCCCCcCcHHH-----------HhhhhhhccCCCccCCCCCCCEeCC
Confidence 334556789999988886422 222221 234679999998873
No 143
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=57.41 E-value=1.8 Score=29.99 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=28.7
Q ss_pred cccccccccccCcEEccCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180 35 VLCLVCQGILIKPIKLPCNHHVCLECLQRICD---NSNLSCPMCRKRL 79 (143)
Q Consensus 35 ~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 79 (143)
-.|.+|.+--.--..-.|...|+..|+..-+. .+...||.|+...
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 46888885422101115888888889865443 4567899998654
No 144
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=57.40 E-value=2.7 Score=28.80 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=33.3
Q ss_pred CccccccccccccC---cEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~---pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
+-|.|..|...|.. +....=|..||..|..+.+... ..|..|.+.+.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~-~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC-EECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccC-CccccCCCccc
Confidence 46789999888764 4445567889999988765421 14888887775
No 145
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=56.36 E-value=9.9 Score=25.39 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=29.1
Q ss_pred CccccccccccccCcEEccCCChhHHHHHHHHhhcCCCccccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRL 79 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 79 (143)
+-|.|..|...|.......=|..||..|..+.+. ..|..|...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I 75 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGI 75 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc---cccccccccc
Confidence 4689999998877543344577899999887653 1255554443
No 146
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=55.41 E-value=6.5 Score=33.24 Aligned_cols=52 Identities=25% Similarity=0.589 Sum_probs=38.2
Q ss_pred CCCCccccccccccccCcE----------EccCCChh--------------------HHHHHHHHhhc-------CCCcc
Q psy18180 30 LTPDSVLCLVCQGILIKPI----------KLPCNHHV--------------------CLECLQRICDN-------SNLSC 72 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~pv----------~l~CgH~f--------------------C~~Ci~~~~~~-------~~~~C 72 (143)
...|--.|+-|+..+.+|. .+.||-.| |..|-.++-+- +...|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 4566779999998887762 13677664 99999998752 34579
Q ss_pred cccccccch
Q psy18180 73 PMCRKRLSI 81 (143)
Q Consensus 73 P~Cr~~~~~ 81 (143)
|.|.-.+..
T Consensus 182 ~~CGP~l~l 190 (772)
T 4g9i_A 182 PVCGPSYRL 190 (772)
T ss_dssp TTTSCCEEE
T ss_pred ccCCceEEE
Confidence 999887654
No 147
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=55.34 E-value=8.4 Score=29.84 Aligned_cols=44 Identities=23% Similarity=0.566 Sum_probs=28.7
Q ss_pred ccccccccccccCcEE---ccCCChhHHHHHHHHhh---------cCCCcccccccc
Q psy18180 34 SVLCLVCQGILIKPIK---LPCNHHVCLECLQRICD---------NSNLSCPMCRKR 78 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~---l~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~ 78 (143)
+..|.+|.+--. -+. -.|...||..||.+.+- .....|=.|.-.
T Consensus 93 ~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 446666664221 111 16889999999998873 246779888654
No 148
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.45 E-value=2.2 Score=23.89 Aligned_cols=44 Identities=16% Similarity=0.549 Sum_probs=26.8
Q ss_pred CccccccccccccCcEEc--c--CC-ChhHHHHHHHHhh-cCCCccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKL--P--CN-HHVCLECLQRICD-NSNLSCPMCRK 77 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l--~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~ 77 (143)
+...| ||........+. . |. ..|+..|+.--.. .+...||.|..
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 45677 899865443222 4 55 5788888861111 35677999864
No 149
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=52.09 E-value=1.7 Score=25.00 Aligned_cols=45 Identities=20% Similarity=0.466 Sum_probs=28.1
Q ss_pred CCccccccccccccCcEEc---cCCChhHHHHHHHHhh--cCCCccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL---PCNHHVCLECLQRICD--NSNLSCPMCRK 77 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~ 77 (143)
.+.+.| ||......-..+ .|..-|+..|+.-... ...+.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 456788 998876543333 4777777777653221 23567888864
No 150
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=51.53 E-value=13 Score=25.19 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcccccccccCCCCCCCCCcccccccccccc
Q psy18180 5 KVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILI 45 (143)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~ 45 (143)
+.|+.+...+.+|+.-. ....+.|++|..++.
T Consensus 118 ~~~~~~l~~l~~~~~~~---------~~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 118 ELYRKAKEKAEKGEDIE---------IKKVYICPICGYTAV 149 (170)
T ss_dssp HHHHHHHHHHTTTCCCC---------CSCEEECTTTCCEEE
T ss_pred HHHHHHHHHHhcCCcCC---------CCCeeEeCCCCCeeC
Confidence 45666666676655421 234678998887775
No 151
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=50.95 E-value=1.9 Score=26.41 Aligned_cols=46 Identities=15% Similarity=0.450 Sum_probs=27.5
Q ss_pred CCCccccccccccccCcEEc--cCC---ChhHHHHHHHHhh-cCCCcccc-ccc
Q psy18180 31 TPDSVLCLVCQGILIKPIKL--PCN---HHVCLECLQRICD-NSNLSCPM-CRK 77 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l--~Cg---H~fC~~Ci~~~~~-~~~~~CP~-Cr~ 77 (143)
..+...| ||........+. .|. ..|+..|+.--.. .+...||. |+.
T Consensus 23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 3456788 999855544332 444 5788888752111 34577999 864
No 152
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=50.01 E-value=22 Score=22.33 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=11.1
Q ss_pred chHHHHHHHHHhhccc-ccc
Q psy18180 3 DKKVFRDVSLLLVNSK-MDN 21 (143)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~ 21 (143)
+++.|+..-..+.+|+ +.+
T Consensus 42 ~~e~l~f~f~~~~~gt~~~e 61 (119)
T 2kdx_A 42 DKSLFVSAFETFREESLVCK 61 (119)
T ss_dssp CHHHHHHHHHHHGGGCTTTS
T ss_pred cHHHHHHHHHHHHhCChhhc
Confidence 4556666666666655 444
No 153
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=49.74 E-value=2.1 Score=20.29 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=9.1
Q ss_pred ccccccccccccCcE
Q psy18180 34 SVLCLVCQGILIKPI 48 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv 48 (143)
.+.|+||...+-++.
T Consensus 3 k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMD 17 (28)
T ss_dssp CEECTTSSCEESSHH
T ss_pred cccCccccccCcChH
Confidence 456777776655543
No 154
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.34 E-value=9.7 Score=21.87 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=28.2
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
...-.|.-|.+.+...++..-+..|+..| +.|-.|+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCCC
Confidence 44568999998777655556676666655 348888777653
No 155
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=47.61 E-value=2.4 Score=24.52 Aligned_cols=42 Identities=24% Similarity=0.585 Sum_probs=26.5
Q ss_pred cccccccccc-CcEEc--cCCChhHHHHHHHHhh---cC-CCccccccc
Q psy18180 36 LCLVCQGILI-KPIKL--PCNHHVCLECLQRICD---NS-NLSCPMCRK 77 (143)
Q Consensus 36 ~C~IC~~~~~-~pv~l--~CgH~fC~~Ci~~~~~---~~-~~~CP~Cr~ 77 (143)
.|.||...-. ..+++ .|...|+..|+..-+. .+ ...||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4557774322 22222 6888999999885444 34 667999965
No 156
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=47.59 E-value=2.3 Score=23.73 Aligned_cols=44 Identities=16% Similarity=0.540 Sum_probs=27.4
Q ss_pred CccccccccccccCcEEc--c--CC-ChhHHHHHHHHhh-cCCCccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKL--P--CN-HHVCLECLQRICD-NSNLSCPMCRK 77 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l--~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~ 77 (143)
+...| ||.+......+. . |. ..|+..|+.--.. .+...||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 46677 899865443222 4 66 5888888862111 24567999864
No 157
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=47.31 E-value=8.9 Score=25.96 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=23.9
Q ss_pred cccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 35 VLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 35 ~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
|.|..|...|.......=|..||..|..+.+. ..|..|...+.
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~kC~~C~~~I~ 130 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIP 130 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTTS---CCCTTTCCCCC
T ss_pred CccCCCCCccCCCceeECCEeeecCccccccc---cccccCCCccC
Confidence 45555554444221122345578888776542 35888887775
No 158
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=46.25 E-value=2.5 Score=23.87 Aligned_cols=43 Identities=19% Similarity=0.610 Sum_probs=27.2
Q ss_pred CccccccccccccCcEEc---c--CC-ChhHHHHHHHHhh-cCCCccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKL---P--CN-HHVCLECLQRICD-NSNLSCPMCRK 77 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l---~--Cg-H~fC~~Ci~~~~~-~~~~~CP~Cr~ 77 (143)
+...| +|.+.... ..+ . |. ..|+..|+.-... .+...||.|+.
T Consensus 10 e~~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 46677 89986543 333 4 55 6888888862111 34567999965
No 159
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.57 E-value=2.2 Score=25.23 Aligned_cols=42 Identities=31% Similarity=0.589 Sum_probs=27.3
Q ss_pred cccccccccc-CcEEc--cCCChhHHHHHHHHhh---cC-CCccccccc
Q psy18180 36 LCLVCQGILI-KPIKL--PCNHHVCLECLQRICD---NS-NLSCPMCRK 77 (143)
Q Consensus 36 ~C~IC~~~~~-~pv~l--~CgH~fC~~Ci~~~~~---~~-~~~CP~Cr~ 77 (143)
.|.||...-. ...++ .|...|+..|+..-+. .+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6778875422 22333 6888999999875443 34 567999864
No 160
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.40 E-value=2.8 Score=30.07 Aligned_cols=42 Identities=24% Similarity=0.576 Sum_probs=24.8
Q ss_pred ccccccccccC-cEEc--cCCChhHHHHHHHHhh---cC-CCccccccc
Q psy18180 36 LCLVCQGILIK-PIKL--PCNHHVCLECLQRICD---NS-NLSCPMCRK 77 (143)
Q Consensus 36 ~C~IC~~~~~~-pv~l--~CgH~fC~~Ci~~~~~---~~-~~~CP~Cr~ 77 (143)
.|.+|...-.. ...+ .|...|+..|+..-+. .+ ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57788753221 1222 6888899999986554 34 567999965
No 161
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=45.27 E-value=2.1 Score=25.39 Aligned_cols=42 Identities=26% Similarity=0.622 Sum_probs=24.9
Q ss_pred ccccccccccCcEEc---cCCChhHHHHHHHHhh---cCC-Cccccccc
Q psy18180 36 LCLVCQGILIKPIKL---PCNHHVCLECLQRICD---NSN-LSCPMCRK 77 (143)
Q Consensus 36 ~C~IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~---~~~-~~CP~Cr~ 77 (143)
.|.+|...-..-..+ .|...|+..|+..-+. .+. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 445555433222222 6888899999876544 233 67999864
No 162
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.07 E-value=20 Score=20.35 Aligned_cols=29 Identities=17% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCCccccccccccccC-cEEccCCChhHHH
Q psy18180 31 TPDSVLCLVCQGILIK-PIKLPCNHHVCLE 59 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~-pv~l~CgH~fC~~ 59 (143)
....-.|..|..-+.- +..-.||.+||..
T Consensus 12 k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 4456799999986553 4556899999974
No 163
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=44.95 E-value=14 Score=16.92 Aligned_cols=10 Identities=30% Similarity=1.228 Sum_probs=6.8
Q ss_pred cccccccccc
Q psy18180 71 SCPMCRKRLS 80 (143)
Q Consensus 71 ~CP~Cr~~~~ 80 (143)
.||+|.+..+
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4888876655
No 164
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=44.78 E-value=5.8 Score=23.93 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=32.6
Q ss_pred CccccccccccccCc-EEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
+-|.|..|...|... ....=|..||..|..+.+ ...|..|...+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCccc
Confidence 357899999888643 234567789999976543 346999998886
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.61 E-value=21 Score=19.77 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=21.9
Q ss_pred ccccccccccccCc-EEccCCChhHHHHHHHHhh
Q psy18180 34 SVLCLVCQGILIKP-IKLPCNHHVCLECLQRICD 66 (143)
Q Consensus 34 ~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~~ 66 (143)
-|.|..|...|... ....=|..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 46777887777532 3344567788888777664
No 166
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.44 E-value=27 Score=19.00 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 31 TPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
....+.|.+|...|.....+. .| +..........|+.|.+.+..
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~-~H------~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLA-SH------KTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHH-HH------HHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHHHHH-HH------HHHcCCCCCEECCCCCchhCC
Confidence 345689999999887643221 01 001111234679999988763
No 167
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=44.04 E-value=9.8 Score=26.24 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhhcccccccccCCCCCCCCCcccccccccccc
Q psy18180 4 KKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILI 45 (143)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~ 45 (143)
.+.|+++...+.+|+.-+... ...+.|++|..++.
T Consensus 132 e~~~~~~l~~l~~~~~~~~~~-------~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 132 EKRFLDFARNIKEGRVFLREQ-------ATKWRCRNCGYVHE 166 (191)
T ss_dssp HHHHHHHHHHHHHTCSSEEEE-------EEEEEETTTCCEEE
T ss_pred HHHHHHHHHhhhcccccccCC-------CceEEECCCCCEee
Confidence 356677777777755432210 12578988887765
No 168
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=43.94 E-value=19 Score=19.59 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=24.4
Q ss_pred CccccccccccccCcEEccCCChhHHHHHHHHh----hcCCCcccccccccch
Q psy18180 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC----DNSNLSCPMCRKRLSI 81 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~----~~~~~~CP~Cr~~~~~ 81 (143)
.-+.|.+|...|.....| .... ......|+.|.+.+..
T Consensus 3 Kpy~C~~C~k~F~~~~~L-----------~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGL-----------SRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHH-----------HHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHHH-----------HHHHHHhCCCcCeECCCCCCCcCC
Confidence 357888888888764222 2111 1345679999998874
No 169
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.49 E-value=30 Score=18.72 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=24.9
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
+..+.|++|...|.....|. .| +........+.|+.|.+.+.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~-~H------~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILV-QH------QRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHHHHH-HH------HHGGGCSCCEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHHHHH-HH------HHhcCCCCCeECCCCCcccC
Confidence 45689999998887543221 00 01111133567999998876
No 170
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.09 E-value=8.2 Score=22.21 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=21.0
Q ss_pred CCCccccccccccccCc----EEccCCChhHHH
Q psy18180 31 TPDSVLCLVCQGILIKP----IKLPCNHHVCLE 59 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~p----v~l~CgH~fC~~ 59 (143)
......|..|...+.-+ ..--||.+||..
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred CccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 33456899999877755 334799999963
No 171
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=42.74 E-value=21 Score=20.26 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=20.7
Q ss_pred CCccccccccccccC-cEEccCCChhHHH
Q psy18180 32 PDSVLCLVCQGILIK-PIKLPCNHHVCLE 59 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~-pv~l~CgH~fC~~ 59 (143)
...-.|..|..-+.- +..--||.+||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEeecCCEeccc
Confidence 345689999986553 4555899999963
No 172
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.47 E-value=33 Score=16.85 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=13.3
Q ss_pred CCCCccccccccccccCc
Q psy18180 30 LTPDSVLCLVCQGILIKP 47 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~p 47 (143)
..+..+.|.+|...|...
T Consensus 8 ~~~k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 8 RTRKQVACEICGKIFRDV 25 (48)
T ss_dssp CCCCSEEETTTTEEESSH
T ss_pred CCCcCeeCCCCCcccCCH
Confidence 344568999998888754
No 173
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=41.29 E-value=24 Score=17.93 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=23.4
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+.|++|...|.....+. .| +..........|+.|...+..
T Consensus 4 ~~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-IH------LRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-HH------HHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHHH-HH------HHHcCCCCCcCCCCCcchhCC
Confidence 578999988887643221 00 111111335679999888763
No 174
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.49 E-value=14 Score=21.72 Aligned_cols=50 Identities=26% Similarity=0.491 Sum_probs=30.5
Q ss_pred CCCCCCCcccccccccccc---Cc--EEccCCChhHHHHHHHHhhcCCCccccccc
Q psy18180 27 NNTLTPDSVLCLVCQGILI---KP--IKLPCNHHVCLECLQRICDNSNLSCPMCRK 77 (143)
Q Consensus 27 ~~~~~~~~~~C~IC~~~~~---~p--v~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 77 (143)
..+....+-.|..|...|. +. +--.|.|..|..|-.... +....|-+|.+
T Consensus 18 ~~s~~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~-~~~W~C~VC~k 72 (76)
T 2csz_A 18 RGSQHYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQES-NGTWRCKVCSG 72 (76)
T ss_dssp SCCTTCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECS-TTCEEEHHHHS
T ss_pred CcCcCCCccchhhhCccccccccCCCcCcccChhhcccccccCC-CCCEEEeeCch
Confidence 3444556779999998765 21 223689988888844322 23455666644
No 175
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=40.47 E-value=16 Score=23.16 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=24.3
Q ss_pred ccccccccccccCcE-EccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 34 SVLCLVCQGILIKPI-KLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv-~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
.-.|.-|........ +..-|..|+..|+. |-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~---------C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLK---------CSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSB---------CTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccC---------cCcCCCccc
Confidence 458999998777653 44566666666643 556665553
No 176
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.75 E-value=35 Score=18.25 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=24.4
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhh----cCCCcccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD----NSNLSCPMCRKRLS 80 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~ 80 (143)
+..+.|.+|...|.....| ..... ...+.|+.|...+.
T Consensus 7 ~~~~~C~~C~k~f~~~~~L-----------~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAAL-----------RIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CCSEECSSSSCEESSHHHH-----------HHHHGGGCCSCSEECSSSSCEES
T ss_pred CCCeECCCCCcccCCHHHH-----------HHHHHHcCCCCCEeCCCCCCccC
Confidence 3468999999888764322 11111 23467999988876
No 177
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=39.49 E-value=4.2 Score=21.82 Aligned_cols=39 Identities=18% Similarity=0.440 Sum_probs=20.1
Q ss_pred cccccccCcEEc---cCCChhHHHHHHHHhh--cCCCccccccc
Q psy18180 39 VCQGILIKPIKL---PCNHHVCLECLQRICD--NSNLSCPMCRK 77 (143)
Q Consensus 39 IC~~~~~~pv~l---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~ 77 (143)
||......-..+ .|..-|+..|+.-... .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 466544432233 4666666666642221 24567888864
No 178
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=39.45 E-value=12 Score=21.21 Aligned_cols=31 Identities=13% Similarity=0.334 Sum_probs=19.5
Q ss_pred CCCccccccccccccCcE-Ec----cCCChhHHHHH
Q psy18180 31 TPDSVLCLVCQGILIKPI-KL----PCNHHVCLECL 61 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv-~l----~CgH~fC~~Ci 61 (143)
......|++|...+.+-. .+ .|.--|+..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 445779999999775322 22 57777888887
No 179
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=39.40 E-value=2.6 Score=24.11 Aligned_cols=46 Identities=20% Similarity=0.545 Sum_probs=26.5
Q ss_pred CCCccccccccccccCcEEcc-----CCChhHHHHHHHHh---h----cCCCccccccc
Q psy18180 31 TPDSVLCLVCQGILIKPIKLP-----CNHHVCLECLQRIC---D----NSNLSCPMCRK 77 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l~-----CgH~fC~~Ci~~~~---~----~~~~~CP~Cr~ 77 (143)
.++.+.| ||......-..+. |..-|+..|+.-.- . ...+.||.||.
T Consensus 7 ~e~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 7 PEAKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SSCEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3456788 7977655444443 65567777763110 0 12467999974
No 180
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=39.19 E-value=11 Score=23.70 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=27.8
Q ss_pred CCCCccccccccccccCcEEc----cCCChhHHHHHHHHhh---cCCCcccccccccc
Q psy18180 30 LTPDSVLCLVCQGILIKPIKL----PCNHHVCLECLQRICD---NSNLSCPMCRKRLS 80 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~~pv~l----~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~ 80 (143)
...++..|.+|.+. . ..+. .|-..|+..|+. +. .+...||.|.-.+.
T Consensus 11 ~~~~~~~C~~C~~~-G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 11 KQMHEDYCFQCGDG-G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CCSSCSSCTTTCCC-S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred cCCCCCCCCcCCCC-C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 34456789999842 1 1221 266677777775 33 34567887765444
No 181
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.23 E-value=32 Score=20.07 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=19.2
Q ss_pred Ccccccccccccc-CcEEccCCChhHH
Q psy18180 33 DSVLCLVCQGILI-KPIKLPCNHHVCL 58 (143)
Q Consensus 33 ~~~~C~IC~~~~~-~pv~l~CgH~fC~ 58 (143)
..-.|..|..-+. .+..-.||..||.
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs 50 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCG 50 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECS
T ss_pred cCCcChhhCCcccccCeecCCCCEech
Confidence 3558999987543 3566679999996
No 182
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=38.19 E-value=36 Score=20.30 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=26.4
Q ss_pred CCCCCCCcccccccccc-ccCcEEc---cCCChhHHHHHHHH
Q psy18180 27 NNTLTPDSVLCLVCQGI-LIKPIKL---PCNHHVCLECLQRI 64 (143)
Q Consensus 27 ~~~~~~~~~~C~IC~~~-~~~pv~l---~CgH~fC~~Ci~~~ 64 (143)
.++.....+.|.||... .-..+.- .|.-.|.-.|..+.
T Consensus 10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred CCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC
Confidence 35566778999999764 3333432 58888888997763
No 183
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=37.75 E-value=1.9 Score=27.40 Aligned_cols=44 Identities=20% Similarity=0.539 Sum_probs=26.2
Q ss_pred ccccccccccC-cEEc--cCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180 36 LCLVCQGILIK-PIKL--PCNHHVCLECLQRICD---NSNLSCPMCRKRL 79 (143)
Q Consensus 36 ~C~IC~~~~~~-pv~l--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 79 (143)
.|.||...-.. .+.+ .|...|+..|+..-+. .+...||.|...+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 45566654322 2222 5888888888875443 3456688886544
No 184
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.71 E-value=22 Score=20.83 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=11.9
Q ss_pred ccccccccccCcEEccCCChhHHHH
Q psy18180 36 LCLVCQGILIKPIKLPCNHHVCLEC 60 (143)
Q Consensus 36 ~C~IC~~~~~~pv~l~CgH~fC~~C 60 (143)
.|..|...+...++..-|..|+..|
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~C 51 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEE 51 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTT
T ss_pred CCccCCCEecceEEEECCccccccC
Confidence 4555655554444334444444444
No 185
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.36 E-value=16 Score=20.26 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=20.7
Q ss_pred ccccccccccccCcE-EccCCChhHHHHHHHHhh
Q psy18180 34 SVLCLVCQGILIKPI-KLPCNHHVCLECLQRICD 66 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv-~l~CgH~fC~~Ci~~~~~ 66 (143)
-|.|..|...|..-. ...=|..||..|..+.+.
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 467777777666432 224566777777776554
No 186
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.64 E-value=28 Score=19.07 Aligned_cols=33 Identities=15% Similarity=0.523 Sum_probs=21.7
Q ss_pred ccccccccccccCc-EEccCCChhHHHHHHHHhh
Q psy18180 34 SVLCLVCQGILIKP-IKLPCNHHVCLECLQRICD 66 (143)
Q Consensus 34 ~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~~ 66 (143)
-|.|..|...|... ....=|..||..|..+.+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 56788888777532 3334567788888776653
No 187
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.58 E-value=12 Score=21.88 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=30.1
Q ss_pred CCccccccccccccCcEEc-----cCCChhHHHHHHHHhh--------cCCCccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKL-----PCNHHVCLECLQRICD--------NSNLSCPMCRKRL 79 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l-----~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~ 79 (143)
.+.+.| ||......-..+ .|..-|+..|+.-.-. ...+.||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 356788 899874333333 4778899999853221 1357799997653
No 188
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.54 E-value=26 Score=20.45 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=28.2
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
...-.|..|.+.+...++..-+..|+..| +.|-.|...+..
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCC
Confidence 34568999998777655556666666655 458888887763
No 189
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.23 E-value=10 Score=21.48 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=19.1
Q ss_pred Ccccccccccccc--CcEEccCCChhHHHHHHHHhh
Q psy18180 33 DSVLCLVCQGILI--KPIKLPCNHHVCLECLQRICD 66 (143)
Q Consensus 33 ~~~~C~IC~~~~~--~pv~l~CgH~fC~~Ci~~~~~ 66 (143)
+-|.|..|...|. ......=|..||..|......
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 3467777777665 222333455666666665443
No 190
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.83 E-value=48 Score=18.77 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=11.4
Q ss_pred CCccccccccccccC
Q psy18180 32 PDSVLCLVCQGILIK 46 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~ 46 (143)
...+.|++|...|..
T Consensus 6 ~~~~~C~~C~~~f~~ 20 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSR 20 (96)
T ss_dssp CCCCCBTTTTBCCCC
T ss_pred CcCeECCCCCCccCC
Confidence 346889999988764
No 191
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.25 E-value=25 Score=19.36 Aligned_cols=33 Identities=18% Similarity=0.513 Sum_probs=20.6
Q ss_pred CccccccccccccC-cEEccCCChhHHHHHHHHh
Q psy18180 33 DSVLCLVCQGILIK-PIKLPCNHHVCLECLQRIC 65 (143)
Q Consensus 33 ~~~~C~IC~~~~~~-pv~l~CgH~fC~~Ci~~~~ 65 (143)
+-|.|..|...|.. +....=|..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 35677788776653 2233446678888876654
No 192
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.20 E-value=12 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.662 Sum_probs=9.9
Q ss_pred hcCCCcccccccccc
Q psy18180 66 DNSNLSCPMCRKRLS 80 (143)
Q Consensus 66 ~~~~~~CP~Cr~~~~ 80 (143)
..+...||.|+..+.
T Consensus 3 ~~~~k~CP~C~~~Ie 17 (60)
T 1wd2_A 3 AANTKECPKCHVTIE 17 (60)
T ss_dssp CCCCCCCTTTCCCCS
T ss_pred cccceECcCCCCeeE
Confidence 334456888877775
No 193
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=34.08 E-value=69 Score=18.49 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=13.3
Q ss_pred CCCCCccccccccccccC
Q psy18180 29 TLTPDSVLCLVCQGILIK 46 (143)
Q Consensus 29 ~~~~~~~~C~IC~~~~~~ 46 (143)
+.....+.|.+|...|..
T Consensus 12 ~~~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 12 SKTKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCCCBCSSSCCBCSS
T ss_pred cCCCcCeECCCCCCccCC
Confidence 334557899999988764
No 194
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=33.60 E-value=36 Score=17.14 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=21.6
Q ss_pred cccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 35 VLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 35 ~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
+.|++|...|.....+. .| +..........|+.|...+.
T Consensus 2 ~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK-KH------IRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHHH-HH------HHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHHH-HH------HHhcCCCCCccCCCCCchhc
Confidence 57888888777542221 00 00001123467999988876
No 195
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.63 E-value=18 Score=20.12 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=19.4
Q ss_pred CccccccccccccCc-EEccCCChhHHHHHHHH
Q psy18180 33 DSVLCLVCQGILIKP-IKLPCNHHVCLECLQRI 64 (143)
Q Consensus 33 ~~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~ 64 (143)
+-|.|..|...|... ....=|..||..|..+.
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 356777777766532 22345667777776654
No 196
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.23 E-value=12 Score=20.18 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
+..+.|.+|...|.....+.= .....|+.|...+..
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQ 51 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSC
T ss_pred CCCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcC
Confidence 346899999988876544422 234568888776653
No 197
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=31.78 E-value=23 Score=23.88 Aligned_cols=28 Identities=25% Similarity=0.778 Sum_probs=21.2
Q ss_pred cCCChhHHHHHHHHhhc---------CCCcccccccc
Q psy18180 51 PCNHHVCLECLQRICDN---------SNLSCPMCRKR 78 (143)
Q Consensus 51 ~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~ 78 (143)
+|...||..||...+.. ....|=+|.-.
T Consensus 98 ~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp TTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 48889999999887652 35678888653
No 198
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=31.68 E-value=38 Score=17.33 Aligned_cols=37 Identities=22% Similarity=0.567 Sum_probs=22.6
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHhh----cCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICD----NSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~ 81 (143)
.+.|.+|...|.....+ ..-.. .....|+.|...+..
T Consensus 2 ~~~C~~C~~~f~~~~~l-----------~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHL-----------KRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCHHHH-----------HHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCHHHH-----------HHHHHHhCCCCCccCCCCCCccCC
Confidence 36788888877754222 11111 234679999888763
No 199
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=31.57 E-value=13 Score=25.85 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=21.7
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHH
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQ 62 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~ 62 (143)
.....|++|.+.+-+. |-.+|..|..
T Consensus 161 ~~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC-----CCcCCccccC
Confidence 4678999999988776 8889999864
No 200
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.52 E-value=19 Score=19.58 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=16.5
Q ss_pred ccccccccccccC-cEEccCCChhHHHHHHHH
Q psy18180 34 SVLCLVCQGILIK-PIKLPCNHHVCLECLQRI 64 (143)
Q Consensus 34 ~~~C~IC~~~~~~-pv~l~CgH~fC~~Ci~~~ 64 (143)
-|.|..|...+.. .....=|..||..|..+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp TCBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred cCEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 4566666665543 222334555666665543
No 201
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.01 E-value=36 Score=18.56 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=11.8
Q ss_pred CCCCcccccccccccc
Q psy18180 30 LTPDSVLCLVCQGILI 45 (143)
Q Consensus 30 ~~~~~~~C~IC~~~~~ 45 (143)
...+-+.||+|...+.
T Consensus 6 ~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 6 GLLEILACPACHAPLE 21 (56)
T ss_dssp SCTTSCCCSSSCSCEE
T ss_pred HHHhheeCCCCCCcce
Confidence 3456789999998654
No 202
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.86 E-value=25 Score=19.39 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=19.7
Q ss_pred ccccccccccccC-cEEccCCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIK-PIKLPCNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~-pv~l~CgH~fC~~Ci~~~~ 65 (143)
-|.|..|...|.. +....=|..||..|..+.+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 33 CFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp TCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred cCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 4677777776664 2333455667777776554
No 203
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.33 E-value=44 Score=19.99 Aligned_cols=28 Identities=25% Similarity=0.691 Sum_probs=21.7
Q ss_pred CCCcccccc--ccccccCcEEcc-CCChhHH
Q psy18180 31 TPDSVLCLV--CQGILIKPIKLP-CNHHVCL 58 (143)
Q Consensus 31 ~~~~~~C~I--C~~~~~~pv~l~-CgH~fC~ 58 (143)
......|.. |...-..|+.-. |+..||.
T Consensus 22 ~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVELVAVICPYCEKNFCL 52 (86)
T ss_dssp CSCCEECCSTTCCCEESSCEECTTTCCEECG
T ss_pred CCCCCCCCCcCCCCCCccceECCCCCccccc
Confidence 344578998 998766777776 9999996
No 204
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.21 E-value=45 Score=18.74 Aligned_cols=27 Identities=15% Similarity=0.463 Sum_probs=20.0
Q ss_pred Ccccccc--ccccccCcEEcc-CCChhHHH
Q psy18180 33 DSVLCLV--CQGILIKPIKLP-CNHHVCLE 59 (143)
Q Consensus 33 ~~~~C~I--C~~~~~~pv~l~-CgH~fC~~ 59 (143)
..-.|.. |...-..|+.-. |+..||..
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK 40 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc
Confidence 3568888 997655566665 99999974
No 205
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.76 E-value=42 Score=19.00 Aligned_cols=34 Identities=18% Similarity=0.491 Sum_probs=20.6
Q ss_pred Ccccccccccccc--CcEEc-cCCChhHHHHHHHHhh
Q psy18180 33 DSVLCLVCQGILI--KPIKL-PCNHHVCLECLQRICD 66 (143)
Q Consensus 33 ~~~~C~IC~~~~~--~pv~l-~CgH~fC~~Ci~~~~~ 66 (143)
+-|.|..|...|. ....+ .=|..||..|..+.+.
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 3567777777764 33332 4556777777766553
No 206
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.44 E-value=80 Score=18.67 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=11.2
Q ss_pred CCccccccccccccC
Q psy18180 32 PDSVLCLVCQGILIK 46 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~ 46 (143)
...+.|++|...|..
T Consensus 5 ~~~~~C~~C~~~f~~ 19 (124)
T 2dlq_A 5 SSGVECPTCHKKFLS 19 (124)
T ss_dssp CSSCCCTTTCCCCSS
T ss_pred CCCCCCCCCCCcCCC
Confidence 346889999887764
No 207
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=29.22 E-value=35 Score=20.32 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=19.2
Q ss_pred cccccccccccc-CcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILI-KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~-~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+.||-|..... .|- .+...|+.|...+..
T Consensus 27 ~y~Cp~CG~~~v~r~a------------------tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQG------------------TGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECSSSCCEEEEEEE------------------TTEEEETTTCCEEEC
T ss_pred cCcCCCCCCcceeccC------------------CCeEECCCCCCEecC
Confidence 789999987333 331 123458888887764
No 208
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=29.09 E-value=2.9 Score=26.19 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=29.9
Q ss_pred ccccccccccccCc-EEc----cCCChhHHHHHHHHh---------hcCCCcccccccccc
Q psy18180 34 SVLCLVCQGILIKP-IKL----PCNHHVCLECLQRIC---------DNSNLSCPMCRKRLS 80 (143)
Q Consensus 34 ~~~C~IC~~~~~~p-v~l----~CgH~fC~~Ci~~~~---------~~~~~~CP~Cr~~~~ 80 (143)
...|+||...+.+- ..+ .|..-|+..|+.--. ....+.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46899999886432 122 467778888873211 014567999987654
No 209
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=28.83 E-value=29 Score=19.35 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCCCCCCCcccccccccc--ccCcEEc-cCCChhHH-HHHHH
Q psy18180 26 SNNTLTPDSVLCLVCQGI--LIKPIKL-PCNHHVCL-ECLQR 63 (143)
Q Consensus 26 ~~~~~~~~~~~C~IC~~~--~~~pv~l-~CgH~fC~-~Ci~~ 63 (143)
+..+.++....|.||... .....+- .|+-.||. .|...
T Consensus 3 ~~~s~m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~ 44 (59)
T 1x4s_A 3 SGSSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRT 44 (59)
T ss_dssp CCCSSCCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHH
T ss_pred CCCCCCCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHH
Confidence 345556667799999852 2223333 58888885 67664
No 210
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=28.40 E-value=16 Score=22.91 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.3
Q ss_pred ccccccccccccCcEEccCCChhHH
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCL 58 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~ 58 (143)
...|..|...-..-+-|.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999876555567899999993
No 211
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.63 E-value=21 Score=14.83 Aligned_cols=9 Identities=22% Similarity=1.076 Sum_probs=4.1
Q ss_pred ccccccccc
Q psy18180 72 CPMCRKRLS 80 (143)
Q Consensus 72 CP~Cr~~~~ 80 (143)
|+.|...+.
T Consensus 5 C~~C~~~f~ 13 (29)
T 1ard_A 5 CEVCTRAFA 13 (29)
T ss_dssp CTTTCCBCS
T ss_pred CCCCCcccC
Confidence 444444443
No 212
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.20 E-value=13 Score=15.33 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=5.7
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|.+|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 44555555444
No 213
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.12 E-value=57 Score=19.01 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=20.3
Q ss_pred CCccccccccccccC-cEEccCCChhHHH
Q psy18180 32 PDSVLCLVCQGILIK-PIKLPCNHHVCLE 59 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~-pv~l~CgH~fC~~ 59 (143)
...-.|..|..-+.- +..--||.+||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 345689999966543 4556899999974
No 214
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.04 E-value=67 Score=16.12 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCCccccccccccccCcEEccCCChhHHHHHHHHh-----hcCCCcccccccccc
Q psy18180 31 TPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRIC-----DNSNLSCPMCRKRLS 80 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~-----~~~~~~CP~Cr~~~~ 80 (143)
.+..+.|.+|...|..... +...+ ......|+.|.+.+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~-----------L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDH-----------LNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SSCCEECSSSCCEESSHHH-----------HHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCCeECCCCCcccCCHHH-----------HHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3446899999888875422 22221 123467999988775
No 215
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=26.62 E-value=8.8 Score=18.87 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=10.9
Q ss_pred ccCCChhHHHHHHHH
Q psy18180 50 LPCNHHVCLECLQRI 64 (143)
Q Consensus 50 l~CgH~fC~~Ci~~~ 64 (143)
.+|.|+.|..|--..
T Consensus 10 ascehtmcgycqgpl 24 (40)
T 1erd_A 10 ASCEHTMCGYCQGPL 24 (40)
T ss_dssp HHTCGGGGGGSCHHH
T ss_pred HhccccccccccCCe
Confidence 379999998775443
No 216
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.54 E-value=20 Score=19.11 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=11.1
Q ss_pred cCCCcccccccccc
Q psy18180 67 NSNLSCPMCRKRLS 80 (143)
Q Consensus 67 ~~~~~CP~Cr~~~~ 80 (143)
.....||.|...+.
T Consensus 10 ~~~~~CPrCn~~f~ 23 (49)
T 2e72_A 10 GGRKICPRCNAQFR 23 (49)
T ss_dssp SSCCCCTTTCCCCS
T ss_pred CCceeCCccccccc
Confidence 45567999998886
No 217
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.47 E-value=33 Score=19.20 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=22.8
Q ss_pred cccccccccccc-CcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 34 SVLCLVCQGILI-KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 34 ~~~C~IC~~~~~-~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
.-.|..|.+.+. ...+..-+..|+..| +.|..|...+.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC---------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT---------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC---------CCCCCCCCccC
Confidence 457888887666 333334555555444 44777777765
No 218
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.23 E-value=43 Score=19.02 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=22.8
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccc
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 80 (143)
.-.|.-|...+....+..-|..|+..| +.|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCC
T ss_pred CCCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccC
Confidence 346777777666544445555555444 34777777665
No 219
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.18 E-value=4.8 Score=21.82 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=22.8
Q ss_pred CccccccccccccCcEEccCCChhHHHHHHHHhh-cCCCcccccccccch
Q psy18180 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD-NSNLSCPMCRKRLSI 81 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 81 (143)
..+.|++|...|.....+ ...-. .....|+.|...+..
T Consensus 13 k~~~C~~C~k~F~~~~~l-----------~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEAN-----------QLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SEEECSSSCCEEEHHHHH-----------HHEETTTTEEBCSSSCCBCEE
T ss_pred CCccCCCCCchhccHHHh-----------HhhcCCCCCEECCCCCCcccc
Confidence 457888888777643211 11111 234679999998874
No 220
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.14 E-value=14 Score=15.65 Aligned_cols=12 Identities=17% Similarity=0.689 Sum_probs=6.2
Q ss_pred cccccccccccC
Q psy18180 35 VLCLVCQGILIK 46 (143)
Q Consensus 35 ~~C~IC~~~~~~ 46 (143)
+.|.+|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 455555555543
No 221
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.06 E-value=49 Score=20.29 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=26.4
Q ss_pred CccccccccccccC---cEEccCCChhHHHHHHHHhhc
Q psy18180 33 DSVLCLVCQGILIK---PIKLPCNHHVCLECLQRICDN 67 (143)
Q Consensus 33 ~~~~C~IC~~~~~~---pv~l~CgH~fC~~Ci~~~~~~ 67 (143)
+-|.|..|...|.+ .....=|..||..|..+.+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 46899999988864 333455788999999887753
No 222
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.98 E-value=31 Score=15.43 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=7.5
Q ss_pred ccccccccccccC
Q psy18180 34 SVLCLVCQGILIK 46 (143)
Q Consensus 34 ~~~C~IC~~~~~~ 46 (143)
.+.|++|...|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 4566666665543
No 223
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.66 E-value=18 Score=22.34 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=9.6
Q ss_pred CCcccccccccc
Q psy18180 69 NLSCPMCRKRLS 80 (143)
Q Consensus 69 ~~~CP~Cr~~~~ 80 (143)
+..||+|.+.+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 346999999887
No 224
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.52 E-value=26 Score=20.00 Aligned_cols=47 Identities=15% Similarity=0.347 Sum_probs=27.1
Q ss_pred CccccccccccccCcEEc--cC---CChhHHHHHHHHhh-cCCCcccccccccc
Q psy18180 33 DSVLCLVCQGILIKPIKL--PC---NHHVCLECLQRICD-NSNLSCPMCRKRLS 80 (143)
Q Consensus 33 ~~~~C~IC~~~~~~pv~l--~C---gH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 80 (143)
+...| +|........+. .| ...|+..|+.--.. .+...||.|.....
T Consensus 5 ~~~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 5 SSGYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCCCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCeEE-EcCCCCCCCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcccc
Confidence 45667 588764443222 33 25788999862211 34567999966543
No 225
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.46 E-value=34 Score=18.84 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=18.9
Q ss_pred ccccccccccccCc-EEccCCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIKP-IKLPCNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~ 65 (143)
-|.|..|...|..- ....=|..||..|..+.+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 33 CFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp TTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred CCcccccCCccCCCccCccCCeEECHHHHhHHh
Confidence 46777777666543 222345667777776554
No 226
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.41 E-value=49 Score=18.61 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=18.4
Q ss_pred ccccccccccccCc-EEccCCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIKP-IKLPCNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~ 65 (143)
-|.|..|...+... ....=|..||..|..+.+
T Consensus 41 CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 41 CFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp TCBCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred cCChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 46677777666542 223345667777766544
No 227
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.08 E-value=24 Score=14.40 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=4.3
Q ss_pred cccccccccc
Q psy18180 36 LCLVCQGILI 45 (143)
Q Consensus 36 ~C~IC~~~~~ 45 (143)
.|.+|...|.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 3444444443
No 228
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=30.80 E-value=15 Score=15.52 Aligned_cols=11 Identities=27% Similarity=0.772 Sum_probs=5.0
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|.+|...|.
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 34444444443
No 229
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.85 E-value=42 Score=19.61 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=16.6
Q ss_pred ccccccccccccCc-EEccCCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIKP-IKLPCNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~ 65 (143)
-|.|..|...|..- ....=|..||..|..+.+
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 35666666555432 222334556666665544
No 230
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.77 E-value=52 Score=14.49 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=4.9
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|.+|...|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 44444444443
No 231
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.73 E-value=55 Score=18.35 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=18.6
Q ss_pred ccccccccccccC-cEEccCCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIK-PIKLPCNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~-pv~l~CgH~fC~~Ci~~~~ 65 (143)
-|.|..|...|.. .....=|..||..|..+.+
T Consensus 41 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 41 CLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp TCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred hCCcccCCCcCCCCeeEeECCEEECHHHHHHHc
Confidence 4667777766652 2333455667777766554
No 232
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.37 E-value=28 Score=14.42 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=5.4
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|.+|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 34555555444
No 233
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.29 E-value=24 Score=14.71 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.3
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|.+|...|.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 44555554444
No 234
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.20 E-value=25 Score=14.56 Aligned_cols=9 Identities=56% Similarity=1.335 Sum_probs=4.4
Q ss_pred ccccccccc
Q psy18180 72 CPMCRKRLS 80 (143)
Q Consensus 72 CP~Cr~~~~ 80 (143)
|+.|.+.+.
T Consensus 6 C~~C~k~f~ 14 (28)
T 2kvf_A 6 CSVCGKRFS 14 (28)
T ss_dssp CSSSCCEES
T ss_pred CCCCCcccC
Confidence 555544444
No 235
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=24.19 E-value=56 Score=18.32 Aligned_cols=41 Identities=15% Similarity=0.515 Sum_probs=23.3
Q ss_pred ccccccccccccCcEEccCCChhHHHHHHHHhhcCCCcccccccccch
Q psy18180 34 SVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 81 (143)
.+.|++|...|.....+. .| +..........|+.|...+..
T Consensus 3 ~~~C~~C~k~f~~~~~L~-~H------~~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLT-TH------IRTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CEECTTTCCEESCHHHHH-HH------HHHHHCCCCEECTTTCCEESS
T ss_pred CCcCCCCCCccCCHHHHH-HH------HHHcCCCCCccCCCCCCccCC
Confidence 478999988877543221 00 111111334679999887763
No 236
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.48 E-value=26 Score=14.42 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=5.5
Q ss_pred cccccccccch
Q psy18180 71 SCPMCRKRLSI 81 (143)
Q Consensus 71 ~CP~Cr~~~~~ 81 (143)
.|+.|.+.+..
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvh_A 5 SCSLCPQRSRD 15 (27)
T ss_dssp ECSSSSCEESS
T ss_pred cCCCcChhhCC
Confidence 35555555443
No 237
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.04 E-value=31 Score=14.13 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=4.0
Q ss_pred ccccccccc
Q psy18180 36 LCLVCQGIL 44 (143)
Q Consensus 36 ~C~IC~~~~ 44 (143)
.|+.|...|
T Consensus 4 ~C~~C~~~f 12 (29)
T 2m0e_A 4 KCPHCDKKF 12 (29)
T ss_dssp CCSSCCCCC
T ss_pred cCCCCCccc
Confidence 444444443
No 238
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.88 E-value=73 Score=15.05 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=10.9
Q ss_pred CccccccccccccCc
Q psy18180 33 DSVLCLVCQGILIKP 47 (143)
Q Consensus 33 ~~~~C~IC~~~~~~p 47 (143)
..+.|.+|...|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK 23 (45)
T ss_dssp CSSEETTTTEECSCH
T ss_pred CCCcCCCCCcccCCH
Confidence 457888888877653
No 239
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.68 E-value=22 Score=20.47 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=7.2
Q ss_pred cccccccccccc
Q psy18180 34 SVLCLVCQGILI 45 (143)
Q Consensus 34 ~~~C~IC~~~~~ 45 (143)
...|.-|.+.+.
T Consensus 15 ~~~C~~C~~~I~ 26 (80)
T 2dj7_A 15 PSHCAGCKEEIK 26 (80)
T ss_dssp CSCCTTTCCCCS
T ss_pred CCCCcCcCCeeC
Confidence 446777776554
No 240
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.64 E-value=40 Score=19.09 Aligned_cols=32 Identities=13% Similarity=0.338 Sum_probs=15.9
Q ss_pred ccccccccccccCc-EEccCCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIKP-IKLPCNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~p-v~l~CgH~fC~~Ci~~~~ 65 (143)
-|.|..|...|..- ....=|..||..|..+.+
T Consensus 43 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 75 (82)
T 1x63_A 43 CFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75 (82)
T ss_dssp TCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHT
T ss_pred cCchhhCCCccCCCccEeeCCEEECHHHHHHHh
Confidence 35556665555432 222344556666655544
No 241
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.59 E-value=37 Score=21.19 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=25.0
Q ss_pred Ccccccccccccc--CcEEccCCChhHHHHHHHHhh
Q psy18180 33 DSVLCLVCQGILI--KPIKLPCNHHVCLECLQRICD 66 (143)
Q Consensus 33 ~~~~C~IC~~~~~--~pv~l~CgH~fC~~Ci~~~~~ 66 (143)
+-|.|..|...|. +.....=|..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 4678899988883 334455678899999887765
No 242
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.52 E-value=1e+02 Score=16.60 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=24.6
Q ss_pred CCccccccccccccCcEEccCCChhHHHHHHHHhh----cCCCcccccccccc
Q psy18180 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICD----NSNLSCPMCRKRLS 80 (143)
Q Consensus 32 ~~~~~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~ 80 (143)
+..+.|.+|...|.....| ..... .....|+.|...+.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l-----------~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDL-----------SKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHH-----------HHHHTTTCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHH-----------HHHHHHcCCCcCeeCCCCCCccC
Confidence 4578999999888754322 11111 23467999988876
No 243
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.31 E-value=34 Score=14.27 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=5.7
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|..|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 45555555444
No 244
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=22.21 E-value=30 Score=19.82 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=28.0
Q ss_pred cccccccccccc-CcEEc---cCCChhHHHHHHHHhh----cCCCccccccccc
Q psy18180 34 SVLCLVCQGILI-KPIKL---PCNHHVCLECLQRICD----NSNLSCPMCRKRL 79 (143)
Q Consensus 34 ~~~C~IC~~~~~-~pv~l---~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~ 79 (143)
.+.| ||...+. +-..+ .|.--|+..|+.-... ...+.||.|+...
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 4455 7887654 22233 5888888999853322 2457799997653
No 245
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.16 E-value=34 Score=15.37 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=9.5
Q ss_pred CccccccccccccC
Q psy18180 33 DSVLCLVCQGILIK 46 (143)
Q Consensus 33 ~~~~C~IC~~~~~~ 46 (143)
..+.|++|...|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 35778887776664
No 246
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.99 E-value=9.2 Score=21.91 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=29.0
Q ss_pred CCCccccccccccccCc-EEc---cCCChhHHHHHHHHhh---cCCCccccccccc
Q psy18180 31 TPDSVLCLVCQGILIKP-IKL---PCNHHVCLECLQRICD---NSNLSCPMCRKRL 79 (143)
Q Consensus 31 ~~~~~~C~IC~~~~~~p-v~l---~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 79 (143)
..+.+.| ||.....+- ..+ .|..-|+..|+.-... ...+.||.|+...
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3456788 798875432 233 5776777777653221 2456799997643
No 247
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.94 E-value=27 Score=14.46 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=5.6
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|++|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 34555555444
No 248
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=21.75 E-value=28 Score=18.93 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=16.3
Q ss_pred CccccccccccccCc-EEccCCChhH-HHHHH
Q psy18180 33 DSVLCLVCQGILIKP-IKLPCNHHVC-LECLQ 62 (143)
Q Consensus 33 ~~~~C~IC~~~~~~p-v~l~CgH~fC-~~Ci~ 62 (143)
+-|.|..|...+..- ....=|..|| ..|..
T Consensus 31 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEEETTEEESSHHHHH
T ss_pred CCEECCCCCCcCCCCceEEECCEEecCHHHhh
Confidence 356777777666532 2223355666 66654
No 249
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.61 E-value=24 Score=14.61 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=5.3
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|.+|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 34555554443
No 250
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=21.57 E-value=38 Score=18.97 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=30.6
Q ss_pred CccccccccccccC-cEEccCCChhHH-HHHHHHhhcCCCccccccccc
Q psy18180 33 DSVLCLVCQGILIK-PIKLPCNHHVCL-ECLQRICDNSNLSCPMCRKRL 79 (143)
Q Consensus 33 ~~~~C~IC~~~~~~-pv~l~CgH~fC~-~Ci~~~~~~~~~~CP~Cr~~~ 79 (143)
+-|.|..|...|.. +....=|..||. .|..+.+. ..|-.|....
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 46889999988875 444456778998 59877653 3488786544
No 251
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=21.54 E-value=67 Score=20.82 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=12.8
Q ss_pred cchHHHHHHHHHhhcccccc
Q psy18180 2 LDKKVFRDVSLLLVNSKMDN 21 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (143)
++++.|+..-..+..|++.+
T Consensus 39 v~~e~l~faf~~~~~gt~~e 58 (139)
T 3a43_A 39 VAEDIVKFAMEQLFAGTIAE 58 (139)
T ss_dssp CCHHHHHHHHHHHHTTSTTT
T ss_pred hhHHHHHHHHHHHHcCCccc
Confidence 46667777666676655554
No 252
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=21.32 E-value=6.7 Score=17.53 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=6.7
Q ss_pred hhHHHHHHHHh
Q psy18180 55 HVCLECLQRIC 65 (143)
Q Consensus 55 ~fC~~Ci~~~~ 65 (143)
-||..|-..|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 36776766554
No 253
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.30 E-value=47 Score=14.74 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=5.3
Q ss_pred ccccccccccc
Q psy18180 35 VLCLVCQGILI 45 (143)
Q Consensus 35 ~~C~IC~~~~~ 45 (143)
+.|++|...|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 45555544443
No 254
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.67 E-value=39 Score=22.32 Aligned_cols=10 Identities=30% Similarity=1.009 Sum_probs=7.8
Q ss_pred cccccccccc
Q psy18180 71 SCPMCRKRLS 80 (143)
Q Consensus 71 ~CP~Cr~~~~ 80 (143)
.||.|...+.
T Consensus 150 ~Cp~CG~~~~ 159 (165)
T 2lcq_A 150 VCPDCGSKVK 159 (165)
T ss_dssp BCTTTCCBEE
T ss_pred cCCCCCCcce
Confidence 5999988754
No 255
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.45 E-value=52 Score=14.48 Aligned_cols=10 Identities=30% Similarity=0.859 Sum_probs=4.4
Q ss_pred cccccccccc
Q psy18180 71 SCPMCRKRLS 80 (143)
Q Consensus 71 ~CP~Cr~~~~ 80 (143)
.|+.|.+.+.
T Consensus 11 ~C~~C~k~f~ 20 (36)
T 2elt_A 11 KCPQCSYASA 20 (36)
T ss_dssp ECSSSSCEES
T ss_pred CCCCCCcccC
Confidence 3444444443
No 256
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.34 E-value=65 Score=18.15 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=17.9
Q ss_pred ccccccccccccCcEE-cc-CCChhHHHHHHHHh
Q psy18180 34 SVLCLVCQGILIKPIK-LP-CNHHVCLECLQRIC 65 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~-l~-CgH~fC~~Ci~~~~ 65 (143)
-|.|..|...|..... .. =|..||..|..+.+
T Consensus 41 CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f 74 (81)
T 2dlo_A 41 CFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 74 (81)
T ss_dssp TCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHT
T ss_pred hcCcccCCCccCCCeeEECCCCEEECHHHHHHHh
Confidence 4667777766653322 22 35667777766544
No 257
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.31 E-value=89 Score=17.27 Aligned_cols=31 Identities=23% Similarity=0.604 Sum_probs=19.7
Q ss_pred ccccccccccccCcEE---ccCC-ChhHHHHHHHH
Q psy18180 34 SVLCLVCQGILIKPIK---LPCN-HHVCLECLQRI 64 (143)
Q Consensus 34 ~~~C~IC~~~~~~pv~---l~Cg-H~fC~~Ci~~~ 64 (143)
...|..|......-.. +.|. -.+|..|...-
T Consensus 11 ~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 11 PVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CSCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 4889999875222222 3453 45899998764
No 258
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.22 E-value=36 Score=18.57 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=5.6
Q ss_pred cccccccccc
Q psy18180 36 LCLVCQGILI 45 (143)
Q Consensus 36 ~C~IC~~~~~ 45 (143)
.|.-|...+.
T Consensus 13 ~C~~C~~~i~ 22 (72)
T 3f6q_B 13 TCERCKGGFA 22 (72)
T ss_dssp BCTTTCCBCC
T ss_pred cchhcCcccc
Confidence 5666655544
Done!