RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18180
(143 letters)
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 82.7 bits (204), Expect = 1e-21
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C IL++P+ LPCNH +C C Q + ++L CP CR+R+S W R + + L++
Sbjct: 18 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVE 77
Query: 97 LWNQIQKYYKKEVDQKL 113
LW IQK+Y +E +
Sbjct: 78 LWTIIQKHYPRECKLRA 94
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 61.9 bits (150), Expect = 2e-13
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 3 DKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQ 62
+ K++ +V L + + ++ C+ CQ ++ +PI C H+VC +CL
Sbjct: 21 NAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLD 80
Query: 63 RICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQK 112
R SCP CR L + +++ +++ L + + + + +
Sbjct: 81 RSFRAQVFSCPACRYDLG------RSYAMQVNQPLQTVLNQLFPGYGNGR 124
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 61.2 bits (148), Expect = 5e-13
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLL 92
S +C+ CQ ++ +P+ C H+VC +CLQR SCP CR L +++ ++
Sbjct: 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG------QNYIMI 130
Query: 93 IDENLWNQIQKYYKKEVDQK 112
+E L + ++ +
Sbjct: 131 PNEILQTLLDLFFPGYSKGR 150
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 52.1 bits (125), Expect = 3e-10
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
D C C +L P + C H C C+ + +S+ C C++ +
Sbjct: 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 50.6 bits (121), Expect = 1e-09
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
C +C + P+ LPC H C C++ C +CR+ +
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIP 60
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 51.6 bits (123), Expect = 2e-09
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 17 SKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCR 76
E + N + + + C++C I+ + L C H C C+ CP+CR
Sbjct: 47 QAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-ECPICR 105
Query: 77 KRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQK 112
K + ++K +SL++D N N++ EV ++
Sbjct: 106 KDI-----KSKTYSLVLD-NCINKMVNNLSSEVKER 135
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 50.6 bits (121), Expect = 3e-09
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNKDFS 90
C +C L + ++ PC H C C+ + ++ CP+ + L L +
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75
Query: 91 LLIDE 95
I
Sbjct: 76 REILS 80
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 52.5 bits (125), Expect = 5e-09
Identities = 15/63 (23%), Positives = 22/63 (34%)
Query: 18 KMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 77
K+ E + LC +C PC H +C CL ++ CP CR
Sbjct: 316 KVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 375
Query: 78 RLS 80
+
Sbjct: 376 EIK 378
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 48.1 bits (115), Expect = 1e-08
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN-----LSCPMCRKRLSIW-LRRN 86
+ V C +C +L +P+ CNH C C+ +++ +CP+CR L+ N
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 47.4 bits (113), Expect = 1e-08
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
C CQ P LPC H +C CL+ S + CP+C+ +
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 47.7 bits (114), Expect = 2e-08
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKR 78
+ V+C +C IL KP+ + C H+ CL+C+ +I + S CP+C+
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 48.0 bits (115), Expect = 2e-08
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 35 VLCLVCQGILIKPIKLPCNHHVCLECLQRICDNS-----NLSCPMCRKRLSIW-LRRN 86
V C +C +L +P+ L C H C CL S SCP+CR +R N
Sbjct: 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 48.2 bits (115), Expect = 2e-08
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKRLSIW-LRRN 86
+ C +C ++ +P+ C+H C C+ ++ + CP+C+ ++ L+ +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 48.6 bits (115), Expect = 3e-08
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
LC C+ +L +P + C H C CL I + +C C
Sbjct: 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 46.5 bits (111), Expect = 5e-08
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN------LSCPMCRKRLSIW-LRR 85
+ V C +C +L +P+ L C H +C C+ + SCP+C S L+
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70
Query: 86 N 86
N
Sbjct: 71 N 71
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 48.4 bits (115), Expect = 5e-08
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 33 DSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLSIW--LRRNKDF 89
++C +C +L + C H C +C+ + N CP CRK+L LR + +F
Sbjct: 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112
Query: 90 SLLIDENLWNQIQKYYKKE 108
LI ++ +Y +
Sbjct: 113 DALI-SKIYPSRDEYEAHQ 130
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 44.4 bits (105), Expect = 3e-07
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 31 TPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQR-ICDNSNLSCPMCRKRLS 80
PD +LCL+C+ I+ + +P C + C EC++ + ++ +CP C +
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 43.5 bits (103), Expect = 4e-07
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMC 75
+ V+C +C IL KP+ + C H+ CL+C+ +I + S CP+C
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 43.1 bits (102), Expect = 5e-07
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMC 75
C VC L +P+ + C H+ C C+ R ++ CP+C
Sbjct: 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 44.0 bits (104), Expect = 5e-07
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 31 TPDSVLCLVCQGILIKPIKLP-CNHHVCLECLQR-ICDNSNLSCPMCRKRLSIW--LRRN 86
PD +LCL+C+ I+ + +P C + C EC++ + ++ +CP C + L N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69
Query: 87 KDFSLLIDE 95
K ++
Sbjct: 70 KFLRQAVNN 78
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 45.5 bits (107), Expect = 6e-07
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
C +C L + ++ PC H C C+ + ++ CP+ + L
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 42.8 bits (101), Expect = 1e-06
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
+LC +C+G LI + C H C C+ R SN CP C +
Sbjct: 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVH 61
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 43.7 bits (103), Expect = 1e-06
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSL 91
++C++C G I + C H C C+ R + S CP+C ++ + ++
Sbjct: 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK-YCPICDVQVH---KTRPLLNI 69
Query: 92 LIDENLWNQIQKY----YKKEVDQK 112
D+ L + + K +K E+ ++
Sbjct: 70 RSDKTLQDIVYKLVPGLFKNEMKRR 94
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 43.8 bits (103), Expect = 1e-06
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
S+ C +C+ IL P++ C H C C+ R CP CR
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 42.5 bits (100), Expect = 2e-06
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDEN 96
C +C+ P+ C H+ C C + C +C + K+ + ++
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHFRATP-RCYICDQPTGGIFNPAKELMAKLQKS 76
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 43.0 bits (101), Expect = 2e-06
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 32 PDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLSI-WLRRNKDF 89
+ C +C L P C+ C C++R CP CR L + L +
Sbjct: 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79
Query: 90 SLLIDE 95
+ +
Sbjct: 80 EEVTQQ 85
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 41.6 bits (98), Expect = 4e-06
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 37 CLVC----QGILIKPIKLPCNHHVCLECLQRICDNS--NLSCPMCRK 77
C +C ++P L C H +C +CL+++ +S + CP C K
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 41.2 bits (96), Expect = 4e-06
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 25 NSNNTLTPDSVLCLVCQGIL----IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 77
+ + D V C +C L I C + +C C RI + N CP CRK
Sbjct: 2 SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 40.3 bits (94), Expect = 9e-06
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 25 NSNNTLTPDSVLCLVCQGILIKPIK-------LPCNHHVCLECLQRICDNSNLSCPMCRK 77
+ +V C +C + ++ C H C +CL+ N+N +CP CRK
Sbjct: 6 SGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRK 64
Query: 78 RLS 80
+++
Sbjct: 65 KIN 67
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 40.1 bits (94), Expect = 2e-05
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 32 PDSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNK 87
D + C +C + +P C+H+ C C+++ + CP C ++ L+ N+
Sbjct: 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRK-FLSYKTQCPTCCVTVTEPDLKNNR 76
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 39.1 bits (91), Expect = 3e-05
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 33 DSVLCLVCQGILIKPIK-------LPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
+V C +C + ++ C H C +CL+ N+N +CP CRK+++
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 62
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 38.9 bits (91), Expect = 3e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 37 CLVCQGILI-KPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKD 88
C +C + LPC H C C+ R + +CP+C+ + + +
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVESVVHTIES 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 39.1 bits (91), Expect = 6e-05
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 33 DSVLCLVCQGILIKPIKLP-CNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNKDFS 90
+ C C IL +P+ L C H C C+ CP+C I L+ N+
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLD 77
Query: 91 LLID 94
+I
Sbjct: 78 SMIQ 81
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 36.7 bits (85), Expect = 2e-04
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 37 CLVCQGILIKPIK-------LPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
C +C + ++ C H C +CL+ N+N +CP CRK+++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 36.6 bits (85), Expect = 2e-04
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
C +C + LPC H C +C+ + D +CP+CR +++
Sbjct: 18 CCICMDGR-ADLILPCAHSFCQKCIDKWSDRHR-NCPICRLQMT 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 35.5 bits (82), Expect = 6e-04
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 21 NEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMCRK 77
+ + +S C+VCQ + + LPC H C C++ CPMCR+
Sbjct: 2 SSGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ-----QCPMCRQ 54
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 34.5 bits (79), Expect = 0.001
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 37 CLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-NLSCPMCRK 77
C +C +LI+ C + L C+ + ++ CP C
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.001
Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 26/138 (18%)
Query: 3 DKKVFRDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQ 62
K+V +S + + TLTPD V L+ + + +P LP +
Sbjct: 274 FKQVTDFLSAATTTHISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLP----------R 320
Query: 63 RICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKK---EVDQKLFDQ--- 116
+ + + + + L ++ + + L I+ +K+FD+
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 117 -DDGVWENYHQHISTYLL 133
HI T LL
Sbjct: 381 FPPSA------HIPTILL 392
Score = 30.2 bits (67), Expect = 0.21
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 34/108 (31%)
Query: 34 SVLCL-VCQGILIKP--------IKL-PCN-HHVCLECLQRIC-----DNSNLSCPMCRK 77
+ + L VC ++ + L CN LE LQ++ + ++ S
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 78 RLSI-----WLRR---NKDF--SLLIDENLWNQIQKYYKKEVDQKLFD 115
+L I LRR +K + LL+ N+ N K + F+
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQN------AKAWN--AFN 263
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 35.3 bits (80), Expect = 0.004
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 20 DNEDCNSNNTLTPDSVLCLVCQGILIKPIK-LPCNHHVCLEC---LQRICDNSNLSCPMC 75
++E+ T T S+ C + + P K + C H C + L CP+C
Sbjct: 235 EDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVC 294
Query: 76 RKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWE 122
+ +++ +L I E + + I + +K V+Q DG W
Sbjct: 295 QIDIAL-------ENLAISEFVDD-ILQNCQKNVEQVELTS-DGKWT 332
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 32.8 bits (75), Expect = 0.006
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMCRKR 78
+++LC+VC I PC H V C C ++ SCP+CR R
Sbjct: 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSR 58
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 32.9 bits (74), Expect = 0.009
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 37 CLVCQG-ILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
C C I + +PC H C +C + CP C +
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 32.1 bits (73), Expect = 0.010
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPMCRKR 78
+ LC +C I + +PC H V C +C + + CPMC
Sbjct: 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDK-----CPMCYTV 65
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 34.2 bits (77), Expect = 0.010
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 20 DNEDCNSNNTLTPDSVLCLVCQGILIKPIK-LPCNHHVCLEC---LQRICDNSNLSCPMC 75
+ D T S++C + + L P + + C H C + LQ CP+C
Sbjct: 201 ADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVC 260
Query: 76 RKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWE 122
K+ + SL++D + +VD+ F + DG W
Sbjct: 261 DKKAAY-------ESLILDGLFMEILNDC--SDVDEIKFQE-DGSWC 297
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 31.8 bits (72), Expect = 0.012
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 33 DSVLCLVCQGILIKPIKL-----PCNHHVCLECLQRICDNSNLSCPMCRKRL 79
D C C+ + L C H +C C+ + +CP C L
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 32.1 bits (72), Expect = 0.025
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 49 KLPCNHHVCLECL----QRICDNSNLSCPMCRK 77
C+H L CL + +L CP C+
Sbjct: 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 31.3 bits (70), Expect = 0.039
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 16 NSKMDNEDCNSNNTLTPDSVL-----CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNL 70
+K + +L PD+ C C K + NH++CL CL + SN
Sbjct: 5 QAKAPESKDSPRASLIPDATHLGPQFCKSCWFEN-KGLVECNNHYLCLNCLTLLLSVSNR 63
Query: 71 SCPMCRKRL 79
CP+C+ L
Sbjct: 64 -CPICKMPL 71
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 30.5 bits (69), Expect = 0.041
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 49 KLPCNHHVCLEC----LQRICDNSNLSCPMCRKRL 79
+LPCNH C L+ + SCP+CRK L
Sbjct: 33 QLPCNHLFHDSCIVPWLE-----QHDSCPVCRKSL 62
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 32.2 bits (71), Expect = 0.043
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 16 NSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHV-CLECLQRICDNSNLSCPM 74
+ + C VC + + +PC H V C EC + CP+
Sbjct: 277 TEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRK-----CPI 331
Query: 75 CRK 77
CR
Sbjct: 332 CRG 334
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 31.3 bits (70), Expect = 0.056
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 33 DSVLCLVCQGIL-------IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
+V C +C + C H C +CL+ N+N +CP CRK+++
Sbjct: 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKIN 59
Score = 28.6 bits (63), Expect = 0.42
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 15 VNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIK-------LPCNHHVCLECLQRICDN 67
K N + +V C +C + ++ C H C +CL+ N
Sbjct: 53 TCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112
Query: 68 SNLSCPMCRKRLS 80
+N +CP CRK+++
Sbjct: 113 AN-TCPTCRKKIN 124
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 29.5 bits (67), Expect = 0.056
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 50 LPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
LPC H + C + + CP+C S
Sbjct: 25 LPCGHLLHRTCYEEML-KEGYRCPLCSGPSS 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 29.8 bits (67), Expect = 0.068
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 36 LCLVCQGILIKP--IKLPCNHHV-CLECLQRICDNSNLSCPMCRK 77
C +C+ I H V C C +R+ SCP+C+K
Sbjct: 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA-SCPICKK 52
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 29.6 bits (67), Expect = 0.12
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 49 KLPCNHHVCLEC----LQRICDNSNLSCPMCRKRL 79
+LPC+H+ C LQ + +CP+CR
Sbjct: 58 ELPCHHYFHKPCVSIWLQ-----KSGTCPVCRCMF 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.12
Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 69/167 (41%)
Query: 8 RDVSLLLVNSKMDNEDCNSNNTLTPDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDN 67
+ V + LVN + LV G P L + + L L++
Sbjct: 364 KQVEISLVNG--------------AKN---LVVSG---PPQSL---YGLNLT-LRKAKAP 399
Query: 68 SNLS---CPMCRKRLSIWLRRNKDF---------SLL------IDENLWNQIQKYYKKEV 109
S L P ++L R F LL I+++L + K++
Sbjct: 400 SGLDQSRIPFSERKLKFSNR----FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 110 DQKLFDQDDGV-----------------------WENYHQHISTYLL 133
++D DG WE Q +T++L
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 29.2 bits (66), Expect = 0.12
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 50 LPCNHHVCLEC----LQRICDNSNLSCPMCRKRLS 80
LPCNH +C L+ +N +CP+CR
Sbjct: 42 LPCNHEFHAKCVDKWLK-----ANRTCPICRADSG 71
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 29.5 bits (66), Expect = 0.12
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 36 LCLVCQGILI---KPIKLP-CNHHVCLECLQRICDNSNLSCPMCRK 77
CL CQ + CNH C+ N CP+C++
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSL-WVKQNNRCPLCQQ 72
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 29.0 bits (65), Expect = 0.15
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 50 LPCNHHVCLECLQRICD---NSNLSCPMCRKRL 79
PC H +CL CP+C +
Sbjct: 34 CPCKHAFHRKCL----IKWLEVRKVCPLCNMPV 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 30.5 bits (68), Expect = 0.15
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 37 CLVCQGILIKPIKLP-CNHHVCLECLQRICDNS-NLSCPMCR 76
C +C +LI+ C + L C+ + ++ CP C
Sbjct: 183 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 224
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 27.9 bits (62), Expect = 0.34
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 21 NEDCNSNNTLTPDSVLCLVCQGILIKPIKLP--CNH-HVCLECLQRICDNSNLSCPMCRK 77
+ N+ C++CQG + H C C +++ + CP+CR+
Sbjct: 2 SLPLNAIE-------PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQ 53
Query: 78 R 78
Sbjct: 54 P 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 26.5 bits (59), Expect = 1.4
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
PD + ++ P++LP + + R NS + P R+ L+
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTE 60
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 25.8 bits (57), Expect = 1.7
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 50 LPCNHHVCLEC----LQRICDNSNLSCPMCRKRLS 80
LPC H C L +N CP+CR +
Sbjct: 33 LPCMHLFHQVCVDQWLI-----TNKKCPICRVDIE 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 26.2 bits (58), Expect = 2.0
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
PD + ++ P++LP + + R NS + P R+ L+
Sbjct: 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLT 74
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB:
4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Length = 217
Score = 27.1 bits (59), Expect = 2.1
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 66 DNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY 105
DNS L + L L D+ +L+ WN++ +Y
Sbjct: 63 DNSGLLKDGDAQSLKEHLIDELDY-ILLPTEGWNKLVSWY 101
>1dtd_B Metallocarboxypeptidase inhibitor; carboxypeptidase A2, leech
carboxypeptidase inhibitor, hydrolase/hydrolase
inhibitor complex; HET: GLU; 1.65A {Hirudo medicinalis}
SCOP: g.30.1.1 PDB: 1dtv_A 1zfi_A 1zfl_A 2abz_C
Length = 61
Score = 25.4 bits (55), Expect = 2.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHH 55
PD V C +C+G P + CN H
Sbjct: 9 PDQVCCFICRGAAPLPSEGECNPH 32
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis
hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Length = 307
Score = 26.9 bits (59), Expect = 2.3
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 61 LQRICDNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYYK 106
LQ L R+ L W++RN LI + + K
Sbjct: 204 LQAFALEDKLP-SEKRELLIDWMKRNTTGDALIRAGVPEGWEVADK 248
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 25.1 bits (55), Expect = 2.9
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 33 DSVLCLVCQGILIKPIKLPCN-----HHVCLECLQRICDNS-NLSCPMCRKRLSI 81
D +C +C L C +V CL S N +C +C +
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 25.9 bits (56), Expect = 3.5
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 47 PIKLPCNHHVCLECLQRICDNSNLSCPMCRK 77
CNH C+ R + CP+ +
Sbjct: 68 VAWGVCNHAFHFHCISR-WLKTRQVCPLDNR 97
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 26.3 bits (59), Expect = 4.3
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 111 QKLFDQDDGVWENYHQHISTYLLT 134
L EN+ + T +L
Sbjct: 337 HTLMPAIIKASENHSLRVQTNVLN 360
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific
peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL,
protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Length = 231
Score = 25.9 bits (56), Expect = 5.0
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 66 DNSNLSCPMCRKRLSIWLRRNKDFSLLIDENLWNQIQKYY 105
DNS L + L L D+ L+ WN++ +Y
Sbjct: 72 DNSGLFSDPESQTLKEHLIDELDYV-LVPAEAWNKLLNWY 110
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 24.8 bits (53), Expect = 7.7
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 47 PIKLPCNHHVCLECLQRICDNSNLSCPMCRK 77
CNH C+ R + CP+ +
Sbjct: 79 VAWGVCNHAFHFHCISR-WLKTRQVCPLDNR 108
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 25.6 bits (55), Expect = 7.7
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 10/42 (23%)
Query: 50 LPCNHHVCLECL----------QRICDNSNLSCPMCRKRLSI 81
C CL + + S CP C+ +LS
Sbjct: 332 AKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 24.9 bits (53), Expect = 8.5
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 52 CNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDF 89
C+ VC C + C C + + + +
Sbjct: 91 CSLFVCKSCSHAHPEEQGWLCDPCHLARVVKIGSLEWY 128
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 25.3 bits (55), Expect = 8.5
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 75 CRKRLSIWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVW 121
+RLS L + + + ++ + + + V++ + D
Sbjct: 80 VAQRLSAELLLGQLNAEHAEADVRRVLLQAFDV-VERSFLESIDDAL 125
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 25.2 bits (56), Expect = 8.7
Identities = 2/24 (8%), Positives = 10/24 (41%)
Query: 111 QKLFDQDDGVWENYHQHISTYLLT 134
++ D + + +Y + + +
Sbjct: 343 DRMIDAMNLAYASYTTKVPSSAIN 366
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 25.4 bits (56), Expect = 8.9
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 51 PCNHHVCLECLQRICDNSNLSCPMCRKR 78
C+HH + C N P C
Sbjct: 169 HCSHHSKSKNGYPPCSQFNFDTPKCDYT 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.448
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,147,089
Number of extensions: 112847
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 103
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.5 bits)