RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18180
(143 letters)
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 46.9 bits (111), Expect = 1e-08
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 36 LCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
LC +C PC H +C CL ++ CP CR +
Sbjct: 25 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 69
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 44.5 bits (105), Expect = 5e-08
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
C CQ P LPC H +C CL+ S + CP+C+ +
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 41.4 bits (97), Expect = 2e-06
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 33 DSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
S+ C +C+ IL P++ C H C C+ R CP CR
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 40.8 bits (95), Expect = 5e-06
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSN--LSCPMCRKRLSIW-LRRNKDFSLLI 93
C +C ++ +P+ C+H C C+ ++ + CP+C+ ++ L+ + FS L+
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLV 83
Query: 94 DE 95
+E
Sbjct: 84 EE 85
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 38.4 bits (89), Expect = 2e-05
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 37 CLVCQGILIKP-IKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWL---RRNKDFS 90
C +C + LPC H C C+ R + +CP+C+ + + + +F
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVESVVHTIESDSEFG 64
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 37.8 bits (87), Expect = 4e-05
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIWLRRNKDFSL 91
P+ C + ++ P+ + +Q+ D + +CP ++ L L
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-------HAGL 58
Query: 92 LIDENLWNQIQKY 104
+ L + I +
Sbjct: 59 TPNYVLKSLIALW 71
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 31.7 bits (71), Expect = 0.004
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 33 DSVLCLVCQGIL-----IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
D C C+ +K + C H +C C+ + +CP C L
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 30.6 bits (69), Expect = 0.008
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 33 DSVLCLVCQGILIKPIKL----PCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
D V C VC L + C H EC+ + + +CP+CR + +
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVVV 55
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 31.9 bits (71), Expect = 0.010
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 45 IKPIKLPCNHHVCLECLQRICDNSN----LSCPMCRK 77
+ C+H L CL + N N L CP C+
Sbjct: 54 VVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 30.1 bits (67), Expect = 0.013
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 45 IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLS 80
I C + +C C RI + N CP CRK
Sbjct: 15 INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 30.9 bits (69), Expect = 0.017
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 37 CLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRK 77
CNH C+ R CP+ +
Sbjct: 42 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNR 81
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 27.9 bits (61), Expect = 0.15
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSIW 82
PD + + ++ +P P + ++ P+ R L+
Sbjct: 5 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 55
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 28.2 bits (62), Expect = 0.16
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 33 DSVLCLVCQGILIKPIKL-PCNHHVCLECLQRICDNSNLSCPMCRKRLSIW-LRRNKDFS 90
+ C C IL +P+ L C H C C+ CP+C I L+ N+
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPAWIQDLKINRQLD 77
Query: 91 LLID 94
+I
Sbjct: 78 SMIQ 81
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 26.0 bits (56), Expect = 0.61
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 16/69 (23%)
Query: 19 MDNEDCNSNNTLTPDSVLCLVCQ-----GILIKPIKLPCNHHVCLECLQR-ICDNSNLSC 72
M++ED +C +C +V CL + + N +C
Sbjct: 1 MEDEDVP----------VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTAC 50
Query: 73 PMCRKRLSI 81
+C +
Sbjct: 51 QICGVVYNT 59
>d1dtdb_ g.30.1.1 (B:) Carboxypeptidase inhibitor {Medicinal leech
(Hirudo medicinalis) [TaxId: 6421]}
Length = 61
Score = 25.4 bits (55), Expect = 0.76
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 32 PDSVLCLVCQGILIKPIKLPCNHH 55
PD V C +C+G P + CN H
Sbjct: 9 PDQVCCFICRGAAPLPSEGECNPH 32
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 23.9 bits (51), Expect = 2.5
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 36 LCLVCQGIL-IKPIKLPCNHHVCLECLQRICDNSNLSCPMCRKRLSI 81
LC + + + L + P+ + LSI
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLL-EQYVKDTGNDPITNEPLSI 47
>d1vk3a4 d.139.1.1 (A:508-603) Phosphoribosylformylglycinamidine
synthase II, domains 2 and 4 {Thermotoga maritima
[TaxId: 2336]}
Length = 96
Score = 24.5 bits (53), Expect = 3.1
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 87 KDFSLLIDENLWNQIQKYYKKEVDQKLF 114
DF L ++ LW I +K ++ F
Sbjct: 14 NDFELEREKELWRAI----RKLSEEGAF 37
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 24.4 bits (53), Expect = 3.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 52 CNHHVCLECLQRICDNSNLSCPMCRKR 78
C C C + +CP C+ R
Sbjct: 41 CGFPACRPCYEYERREGTQNCPQCKTR 67
>d2oy9a1 a.276.1.1 (A:6-90) Uncharacterized protein BH2638 {Bacillus
halodurans [TaxId: 86665]}
Length = 85
Score = 23.1 bits (50), Expect = 8.4
Identities = 2/19 (10%), Positives = 10/19 (52%)
Query: 96 NLWNQIQKYYKKEVDQKLF 114
+ + I++ Y + + ++
Sbjct: 18 HFFQAIEQAYDQGIAREDL 36
>d1ii2a2 c.109.1.1 (A:2-200) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 199
Score = 23.8 bits (51), Expect = 8.9
Identities = 7/55 (12%), Positives = 15/55 (27%)
Query: 81 IWLRRNKDFSLLIDENLWNQIQKYYKKEVDQKLFDQDDGVWENYHQHISTYLLTA 135
W + N S + +++ + D G E Y + +
Sbjct: 60 DWGKVNMKLSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRP 114
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria
mellonella densovirus [TaxId: 37138]}
Length = 415
Score = 24.1 bits (52), Expect = 9.3
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 101 IQKYYKKEVDQKLFDQDDGVWENYHQHISTY 131
+Q YY +Q G W +H+ +
Sbjct: 192 LQNYYCMYQQT---NQGTGGWPCLAEHLQQF 219
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.448
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 550,313
Number of extensions: 25111
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 44
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.8 bits)