Query psy18185
Match_columns 190
No_of_seqs 109 out of 1149
Neff 7.1
Searched_HMMs 46136
Date Sat Aug 17 01:00:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1224 TIP49 DNA helicase TIP 100.0 2.7E-37 5.9E-42 265.8 17.6 183 6-189 268-450 (450)
2 KOG2680|consensus 100.0 7.9E-35 1.7E-39 246.6 17.7 183 7-190 266-448 (454)
3 KOG1942|consensus 100.0 8.5E-35 1.8E-39 245.9 16.3 184 6-189 273-456 (456)
4 PF06068 TIP49: TIP49 C-termin 100.0 1.9E-32 4.1E-37 238.0 11.7 142 6-148 255-396 (398)
5 COG2812 DnaX DNA polymerase II 99.9 1E-24 2.2E-29 197.6 14.4 145 3-170 98-243 (515)
6 PRK14956 DNA polymerase III su 99.9 2.2E-22 4.9E-27 181.3 16.1 142 6-170 103-245 (484)
7 PRK07994 DNA polymerase III su 99.9 1.7E-21 3.7E-26 181.2 18.8 143 4-169 99-242 (647)
8 PRK07003 DNA polymerase III su 99.9 1E-21 2.2E-26 183.8 17.0 124 29-170 119-243 (830)
9 KOG0989|consensus 99.9 1.6E-21 3.5E-26 165.6 14.6 123 28-169 128-251 (346)
10 PRK12323 DNA polymerase III su 99.9 2.2E-21 4.8E-26 179.5 16.5 145 5-172 105-250 (700)
11 PRK14958 DNA polymerase III su 99.9 2E-21 4.4E-26 177.2 15.6 145 4-171 99-244 (509)
12 COG2256 MGS1 ATPase related to 99.9 5E-21 1.1E-25 167.5 15.2 124 30-168 105-235 (436)
13 PRK14949 DNA polymerase III su 99.9 1.6E-20 3.4E-25 178.5 18.5 143 4-169 99-242 (944)
14 PRK14951 DNA polymerase III su 99.9 1.1E-20 2.5E-25 175.2 16.1 144 4-170 104-248 (618)
15 PRK04132 replication factor C 99.9 1.7E-20 3.7E-25 178.5 17.2 122 29-169 630-752 (846)
16 PRK14960 DNA polymerase III su 99.9 3.3E-20 7.1E-25 172.1 18.3 142 5-169 99-241 (702)
17 PRK14952 DNA polymerase III su 99.8 2.7E-20 6E-25 171.9 16.8 144 5-170 99-243 (584)
18 PRK14957 DNA polymerase III su 99.8 7.1E-20 1.5E-24 167.9 18.3 143 5-170 100-243 (546)
19 PRK14964 DNA polymerase III su 99.8 2.6E-20 5.7E-25 168.8 15.0 143 5-170 97-240 (491)
20 PRK14965 DNA polymerase III su 99.8 4.2E-20 9E-25 170.9 15.4 143 4-169 99-242 (576)
21 PRK08451 DNA polymerase III su 99.8 7.7E-20 1.7E-24 167.2 16.4 123 29-169 117-240 (535)
22 PRK05563 DNA polymerase III su 99.8 9.4E-20 2E-24 168.1 16.3 142 5-169 100-242 (559)
23 PRK14969 DNA polymerase III su 99.8 1.2E-19 2.6E-24 166.4 16.2 124 28-169 118-242 (527)
24 PRK14961 DNA polymerase III su 99.8 1.5E-19 3.2E-24 158.8 15.5 123 29-169 119-242 (363)
25 PLN03025 replication factor C 99.8 3E-19 6.5E-24 154.1 16.9 121 29-168 99-220 (319)
26 PRK06645 DNA polymerase III su 99.8 1.7E-19 3.8E-24 164.3 16.0 130 28-172 127-257 (507)
27 PRK08691 DNA polymerase III su 99.8 2.8E-19 6.2E-24 166.7 17.7 144 5-171 100-244 (709)
28 PRK07133 DNA polymerase III su 99.8 2.4E-19 5.3E-24 168.1 16.1 143 5-170 99-242 (725)
29 PRK07764 DNA polymerase III su 99.8 5.3E-19 1.1E-23 168.7 16.3 143 5-169 101-244 (824)
30 PRK14959 DNA polymerase III su 99.8 6.7E-19 1.5E-23 163.0 16.2 142 5-169 100-242 (624)
31 PRK14953 DNA polymerase III su 99.8 1.1E-18 2.4E-23 158.5 15.9 142 5-169 100-242 (486)
32 PRK09111 DNA polymerase III su 99.8 1.4E-18 3E-23 161.1 16.4 143 5-170 113-256 (598)
33 PRK14962 DNA polymerase III su 99.8 1.2E-18 2.5E-23 157.9 15.3 145 6-173 99-244 (472)
34 PRK05896 DNA polymerase III su 99.8 1.3E-18 2.9E-23 160.5 15.5 142 5-169 100-242 (605)
35 PRK06647 DNA polymerase III su 99.8 2E-18 4.4E-23 159.2 15.5 143 4-169 99-242 (563)
36 PRK14971 DNA polymerase III su 99.8 1.1E-17 2.5E-22 155.7 17.1 123 28-168 120-243 (614)
37 PRK14954 DNA polymerase III su 99.8 1.8E-17 3.9E-22 154.2 16.9 127 28-168 126-254 (620)
38 PRK06305 DNA polymerase III su 99.8 2.9E-17 6.2E-22 148.2 17.7 140 6-168 103-243 (451)
39 PRK14955 DNA polymerase III su 99.8 1.8E-17 4E-22 147.1 15.9 127 28-168 126-254 (397)
40 KOG0991|consensus 99.8 4.2E-18 9.1E-23 140.8 10.7 123 7-148 93-219 (333)
41 PRK14963 DNA polymerase III su 99.8 2.7E-17 5.9E-22 150.1 16.3 122 29-169 116-238 (504)
42 PRK14948 DNA polymerase III su 99.7 3.5E-17 7.6E-22 152.5 15.6 122 28-168 120-242 (620)
43 KOG2028|consensus 99.7 2.2E-17 4.8E-22 143.7 12.1 154 5-175 202-375 (554)
44 PRK09112 DNA polymerase III su 99.7 3.9E-17 8.5E-22 143.1 13.5 122 5-147 122-244 (351)
45 PRK14950 DNA polymerase III su 99.7 7.3E-17 1.6E-21 149.7 15.8 144 4-170 100-244 (585)
46 TIGR02397 dnaX_nterm DNA polym 99.7 6.8E-17 1.5E-21 140.0 13.9 124 28-169 116-240 (355)
47 KOG2035|consensus 99.7 1.1E-16 2.4E-21 134.9 13.7 147 28-188 126-279 (351)
48 PRK07993 DNA polymerase III su 99.7 5.9E-17 1.3E-21 141.1 11.7 118 4-145 88-206 (334)
49 PRK07399 DNA polymerase III su 99.7 1.8E-16 4E-21 137.0 14.5 111 21-148 116-226 (314)
50 PRK14970 DNA polymerase III su 99.7 5.7E-16 1.2E-20 135.7 16.5 123 29-169 108-231 (367)
51 PRK12402 replication factor C 99.7 1.3E-15 2.9E-20 130.8 17.2 141 11-170 107-248 (337)
52 PRK06871 DNA polymerase III su 99.7 2.3E-16 5E-21 136.8 12.5 119 4-146 87-206 (325)
53 PF05496 RuvB_N: Holliday junc 99.7 6.7E-17 1.5E-21 133.1 7.6 109 30-152 102-230 (233)
54 PRK05707 DNA polymerase III su 99.7 4.1E-16 8.9E-21 135.5 12.3 119 4-145 86-205 (328)
55 PRK00440 rfc replication facto 99.7 3.2E-15 6.9E-20 127.4 17.2 122 29-169 102-224 (319)
56 TIGR02902 spore_lonB ATP-depen 99.7 1.4E-15 3.1E-20 139.7 14.9 126 30-169 176-330 (531)
57 PRK08485 DNA polymerase III su 99.7 5.1E-16 1.1E-20 125.6 10.2 103 32-149 57-173 (206)
58 COG2255 RuvB Holliday junction 99.7 1.6E-15 3.5E-20 128.3 13.6 127 30-170 104-250 (332)
59 PRK13341 recombination factor 99.7 2E-15 4.4E-20 142.7 15.8 126 30-168 110-244 (725)
60 PRK08084 DNA replication initi 99.7 1.7E-15 3.7E-20 125.7 13.5 124 31-169 99-234 (235)
61 PRK08769 DNA polymerase III su 99.7 9.5E-16 2.1E-20 132.7 11.4 98 28-145 112-210 (319)
62 PRK13342 recombination factor 99.6 7.7E-15 1.7E-19 130.9 16.3 123 30-170 93-218 (413)
63 PRK00080 ruvB Holliday junctio 99.6 5.8E-15 1.2E-19 127.8 14.9 128 30-171 103-250 (328)
64 TIGR00635 ruvB Holliday juncti 99.6 3.5E-15 7.5E-20 127.2 12.3 127 30-170 82-228 (305)
65 PRK06090 DNA polymerase III su 99.6 2.7E-15 5.9E-20 129.9 11.4 115 4-145 88-203 (319)
66 PRK07940 DNA polymerase III su 99.6 3.8E-15 8.1E-20 132.4 12.5 118 4-145 97-215 (394)
67 TIGR00678 holB DNA polymerase 99.6 3.2E-15 7E-20 119.4 10.6 93 28-140 95-188 (188)
68 PRK06620 hypothetical protein; 99.6 1.5E-14 3.3E-19 118.7 14.7 123 31-168 87-213 (214)
69 PTZ00112 origin recognition co 99.6 3.9E-15 8.4E-20 141.3 12.6 146 31-189 871-1026(1164)
70 PRK08727 hypothetical protein; 99.6 4.4E-14 9.6E-19 117.1 16.7 125 31-169 95-229 (233)
71 PRK07276 DNA polymerase III su 99.6 6.2E-15 1.3E-19 126.1 11.8 115 4-145 84-199 (290)
72 PRK04195 replication factor C 99.6 2.9E-14 6.2E-19 129.6 16.6 137 12-168 80-222 (482)
73 PRK06964 DNA polymerase III su 99.6 6.6E-15 1.4E-19 128.6 11.5 114 4-144 112-226 (342)
74 PRK07471 DNA polymerase III su 99.6 1.2E-14 2.6E-19 128.0 12.1 118 5-145 122-240 (365)
75 PRK05564 DNA polymerase III su 99.6 1.5E-14 3.2E-19 124.5 12.2 118 4-144 73-191 (313)
76 PRK14700 recombination factor 99.6 6.6E-15 1.4E-19 125.6 9.6 104 52-168 3-112 (300)
77 PRK08058 DNA polymerase III su 99.6 1.5E-14 3.3E-19 125.6 11.2 98 28-146 109-207 (329)
78 PRK05818 DNA polymerase III su 99.6 2.6E-14 5.7E-19 120.2 11.9 138 4-175 67-215 (261)
79 PRK06893 DNA replication initi 99.6 1E-13 2.3E-18 114.5 14.4 126 30-170 92-229 (229)
80 PRK00411 cdc6 cell division co 99.5 1.8E-13 3.8E-18 120.5 15.6 149 31-189 140-302 (394)
81 PRK05917 DNA polymerase III su 99.5 5.5E-14 1.2E-18 120.1 11.9 101 4-138 75-176 (290)
82 PRK05642 DNA replication initi 99.5 5.2E-13 1.1E-17 110.8 16.0 126 31-169 99-233 (234)
83 PRK09087 hypothetical protein; 99.5 3.9E-13 8.4E-18 111.2 14.3 127 31-171 89-222 (226)
84 KOG0990|consensus 99.5 1E-13 2.2E-18 118.8 9.8 107 29-149 131-238 (360)
85 PRK07132 DNA polymerase III su 99.5 2.3E-13 5E-18 117.0 11.4 96 29-145 90-186 (299)
86 TIGR02928 orc1/cdc6 family rep 99.5 8.7E-13 1.9E-17 114.8 14.8 150 30-189 130-294 (365)
87 PHA02544 44 clamp loader, smal 99.5 2.4E-12 5.2E-17 110.2 16.5 118 29-166 100-226 (316)
88 COG0470 HolB ATPase involved i 99.5 9.2E-14 2E-18 118.4 6.7 116 9-150 90-206 (325)
89 PF13177 DNA_pol3_delta2: DNA 99.5 1E-13 2.3E-18 109.0 6.3 80 4-101 82-162 (162)
90 PRK08903 DnaA regulatory inact 99.4 3.4E-12 7.3E-17 104.7 14.6 128 30-169 91-224 (227)
91 PRK06581 DNA polymerase III su 99.4 1.1E-12 2.5E-17 109.2 11.5 123 4-148 69-192 (263)
92 COG1474 CDC6 Cdc6-related prot 99.4 1.7E-12 3.7E-17 114.5 12.9 149 31-189 125-285 (366)
93 TIGR02881 spore_V_K stage V sp 99.4 7.8E-12 1.7E-16 105.0 12.5 112 30-149 106-236 (261)
94 TIGR02903 spore_lon_C ATP-depe 99.4 9.5E-12 2.1E-16 116.3 14.1 127 30-170 266-429 (615)
95 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.3E-11 2.7E-16 100.6 12.8 124 31-168 92-225 (226)
96 PRK00149 dnaA chromosomal repl 99.3 1.2E-11 2.6E-16 111.5 12.2 126 30-171 212-349 (450)
97 TIGR00362 DnaA chromosomal rep 99.3 7.9E-11 1.7E-15 104.7 12.7 129 30-171 200-337 (405)
98 PRK14087 dnaA chromosomal repl 99.3 1.2E-10 2.6E-15 105.3 14.0 126 30-170 207-347 (450)
99 PRK12422 chromosomal replicati 99.2 8.7E-11 1.9E-15 106.1 12.6 128 30-170 203-342 (445)
100 CHL00181 cbbX CbbX; Provisiona 99.2 8.1E-11 1.8E-15 100.6 11.7 111 30-148 123-251 (287)
101 COG0593 DnaA ATPase involved i 99.2 3.1E-10 6.6E-15 101.1 14.7 128 30-173 176-315 (408)
102 PRK08699 DNA polymerase III su 99.2 4.2E-11 9.1E-16 104.1 9.0 90 4-111 93-183 (325)
103 PF00308 Bac_DnaA: Bacterial d 99.2 2.6E-10 5.6E-15 93.9 12.4 111 30-152 98-217 (219)
104 PRK14088 dnaA chromosomal repl 99.2 1.6E-10 3.6E-15 104.1 11.7 126 30-171 195-332 (440)
105 TIGR02639 ClpA ATP-dependent C 99.2 2.4E-10 5.2E-15 108.8 12.5 133 30-171 275-429 (731)
106 TIGR02880 cbbX_cfxQ probable R 99.2 2.3E-10 4.9E-15 97.7 10.9 112 30-149 122-251 (284)
107 TIGR00602 rad24 checkpoint pro 99.2 3.5E-10 7.5E-15 105.9 12.1 129 29-168 195-352 (637)
108 PRK14086 dnaA chromosomal repl 99.1 8.1E-10 1.8E-14 102.7 14.1 129 30-171 378-515 (617)
109 KOG1514|consensus 99.1 5.2E-10 1.1E-14 104.1 11.8 149 30-189 509-675 (767)
110 TIGR03345 VI_ClpV1 type VI sec 99.1 1.8E-09 4E-14 104.3 13.9 145 8-165 263-425 (852)
111 TIGR01128 holA DNA polymerase 99.1 5.9E-09 1.3E-13 88.3 15.2 130 26-169 43-176 (302)
112 TIGR03015 pepcterm_ATPase puta 99.0 2E-08 4.3E-13 83.7 16.3 143 12-170 110-265 (269)
113 KOG2227|consensus 99.0 2.7E-09 6E-14 95.7 8.9 149 14-175 244-419 (529)
114 TIGR02030 BchI-ChlI magnesium 98.9 6.1E-08 1.3E-12 84.8 13.6 130 31-170 133-308 (337)
115 PRK11034 clpA ATP-dependent Cl 98.8 7.6E-08 1.6E-12 92.1 12.6 131 30-169 279-431 (758)
116 PRK13407 bchI magnesium chelat 98.7 4.1E-07 8.8E-12 79.5 14.0 129 31-169 130-304 (334)
117 PRK10787 DNA-binding ATP-depen 98.7 1.9E-07 4.1E-12 89.7 11.5 126 30-169 417-580 (784)
118 COG1223 Predicted ATPase (AAA+ 98.7 6.8E-07 1.5E-11 75.7 13.5 127 29-170 210-354 (368)
119 PRK05574 holA DNA polymerase I 98.6 1E-06 2.2E-11 76.0 14.5 127 29-170 76-212 (340)
120 CHL00081 chlI Mg-protoporyphyr 98.6 1.1E-06 2.4E-11 77.2 14.6 131 30-170 145-321 (350)
121 PRK07452 DNA polymerase III su 98.6 7.6E-07 1.7E-11 76.7 13.4 131 28-169 60-197 (326)
122 TIGR00763 lon ATP-dependent pr 98.6 1.5E-07 3.2E-12 90.4 9.7 104 31-147 416-550 (775)
123 CHL00176 ftsH cell division pr 98.6 1.3E-06 2.8E-11 82.3 15.3 126 30-170 276-422 (638)
124 TIGR03346 chaperone_ClpB ATP-d 98.6 3E-07 6.6E-12 89.1 11.2 128 10-150 251-395 (852)
125 PRK13406 bchD magnesium chelat 98.6 7.5E-07 1.6E-11 83.1 12.6 134 30-172 94-251 (584)
126 PRK03992 proteasome-activating 98.6 1.2E-06 2.5E-11 78.0 13.2 128 30-171 225-372 (389)
127 TIGR02640 gas_vesic_GvpN gas v 98.6 1.6E-06 3.5E-11 73.1 13.3 122 31-168 107-254 (262)
128 TIGR01241 FtsH_fam ATP-depende 98.6 2.5E-06 5.5E-11 78.0 15.4 128 30-171 148-295 (495)
129 TIGR02442 Cob-chelat-sub cobal 98.5 1.7E-06 3.7E-11 81.5 13.9 132 30-172 127-305 (633)
130 TIGR03345 VI_ClpV1 type VI sec 98.5 5.4E-07 1.2E-11 87.3 10.8 118 29-147 668-826 (852)
131 COG1222 RPT1 ATP-dependent 26S 98.5 2.4E-06 5.1E-11 75.0 13.6 124 30-171 245-392 (406)
132 CHL00095 clpC Clp protease ATP 98.5 3.8E-07 8.3E-12 88.1 9.6 128 8-150 255-400 (821)
133 smart00350 MCM minichromosome 98.5 4E-06 8.7E-11 77.0 15.4 143 30-172 301-505 (509)
134 TIGR01242 26Sp45 26S proteasom 98.5 1.9E-06 4.2E-11 75.7 12.7 126 30-170 216-362 (364)
135 TIGR02031 BchD-ChlD magnesium 98.5 3.7E-06 8E-11 78.6 14.0 133 30-172 85-259 (589)
136 PTZ00454 26S protease regulato 98.4 4.8E-06 1E-10 74.4 13.6 128 30-171 239-386 (398)
137 PRK05629 hypothetical protein; 98.4 4.8E-06 1E-10 71.9 12.7 126 28-168 63-189 (318)
138 PRK06585 holA DNA polymerase I 98.4 1.5E-05 3.3E-10 69.2 15.6 127 28-170 80-209 (343)
139 KOG1969|consensus 98.4 9.6E-06 2.1E-10 76.5 14.6 145 7-167 366-533 (877)
140 PRK07914 hypothetical protein; 98.4 9.1E-06 2E-10 70.3 13.0 127 28-169 63-192 (320)
141 CHL00095 clpC Clp protease ATP 98.4 3E-06 6.5E-11 81.9 10.7 117 29-145 611-775 (821)
142 PTZ00361 26 proteosome regulat 98.3 3.3E-06 7.2E-11 76.3 9.9 127 30-171 277-424 (438)
143 TIGR02639 ClpA ATP-dependent C 98.3 3.8E-06 8.2E-11 80.3 10.7 118 29-146 553-706 (731)
144 CHL00206 ycf2 Ycf2; Provisiona 98.3 1.3E-05 2.7E-10 82.3 14.5 127 29-168 1732-1874(2281)
145 TIGR01817 nifA Nif-specific re 98.3 5.1E-06 1.1E-10 76.5 10.9 127 30-165 291-439 (534)
146 PRK10865 protein disaggregatio 98.3 3.6E-06 7.8E-11 81.8 10.3 126 11-149 257-399 (857)
147 CHL00195 ycf46 Ycf46; Provisio 98.3 4E-05 8.7E-10 70.2 15.4 130 30-172 319-464 (489)
148 PRK11034 clpA ATP-dependent Cl 98.3 6.8E-06 1.5E-10 78.8 10.7 118 29-146 557-710 (758)
149 TIGR03346 chaperone_ClpB ATP-d 98.2 8.8E-06 1.9E-10 79.0 11.3 120 29-148 667-822 (852)
150 TIGR02974 phageshock_pspF psp 98.2 6.5E-06 1.4E-10 71.7 9.4 116 30-151 94-233 (329)
151 TIGR00368 Mg chelatase-related 98.2 2.5E-05 5.4E-10 71.8 13.4 141 30-170 296-498 (499)
152 PRK05907 hypothetical protein; 98.2 7E-05 1.5E-09 65.0 15.4 124 29-169 69-201 (311)
153 TIGR00764 lon_rel lon-related 98.2 2E-05 4.3E-10 74.0 12.6 131 30-171 218-391 (608)
154 PRK08487 DNA polymerase III su 98.2 4.7E-05 1E-09 66.1 13.9 127 28-170 70-199 (328)
155 TIGR01818 ntrC nitrogen regula 98.2 2.3E-05 5E-10 70.4 12.3 128 30-166 229-379 (463)
156 PRK10733 hflB ATP-dependent me 98.2 4.3E-05 9.3E-10 72.2 14.0 127 29-169 244-390 (644)
157 PRK10865 protein disaggregatio 98.2 2.6E-05 5.7E-10 75.8 12.3 119 29-147 670-824 (857)
158 PF05621 TniB: Bacterial TniB 98.1 2.6E-05 5.6E-10 67.2 10.7 125 30-166 146-284 (302)
159 TIGR00390 hslU ATP-dependent p 98.1 2.1E-05 4.5E-10 70.8 10.2 131 30-169 248-428 (441)
160 COG0542 clpA ATP-binding subun 98.1 2.6E-05 5.6E-10 74.6 11.2 127 11-151 249-393 (786)
161 TIGR02329 propionate_PrpR prop 98.1 3.4E-05 7.4E-10 71.3 11.5 131 30-166 308-465 (526)
162 PRK11388 DNA-binding transcrip 98.1 2E-05 4.3E-10 74.1 10.1 129 30-167 417-567 (638)
163 PRK13765 ATP-dependent proteas 98.1 9.3E-05 2E-09 69.9 14.4 128 30-168 227-397 (637)
164 TIGR02915 PEP_resp_reg putativ 98.1 6E-05 1.3E-09 67.5 12.6 126 30-164 234-382 (445)
165 PRK10365 transcriptional regul 98.1 4E-05 8.7E-10 68.3 11.4 125 30-166 234-384 (441)
166 PRK15115 response regulator Gl 98.1 3.2E-05 6.9E-10 69.2 10.6 128 30-166 229-379 (444)
167 PF06144 DNA_pol3_delta: DNA p 98.1 5.1E-06 1.1E-10 64.7 4.8 110 29-148 57-171 (172)
168 PF03215 Rad17: Rad17 cell cyc 98.1 8.2E-05 1.8E-09 68.7 13.1 117 30-149 133-269 (519)
169 PRK13531 regulatory ATPase Rav 98.1 0.00012 2.5E-09 67.0 13.9 134 31-175 109-288 (498)
170 PRK10820 DNA-binding transcrip 98.0 5.4E-05 1.2E-09 69.8 11.5 126 30-164 299-447 (520)
171 KOG1970|consensus 98.0 6.7E-05 1.5E-09 69.0 11.0 113 30-148 195-320 (634)
172 COG1221 PspF Transcriptional r 98.0 2.8E-05 6.2E-10 69.4 8.3 112 30-152 174-310 (403)
173 PRK15424 propionate catabolism 98.0 5.4E-05 1.2E-09 70.2 10.3 129 30-164 323-478 (538)
174 PRK05022 anaerobic nitric oxid 98.0 8.4E-05 1.8E-09 68.3 11.2 117 30-152 282-421 (509)
175 TIGR01243 CDC48 AAA family ATP 98.0 0.00021 4.5E-09 68.5 14.2 125 29-169 546-708 (733)
176 PRK11608 pspF phage shock prot 97.9 7.1E-05 1.5E-09 65.1 10.0 113 30-151 101-240 (326)
177 COG0466 Lon ATP-dependent Lon 97.9 5.6E-05 1.2E-09 71.4 9.5 115 16-146 407-552 (782)
178 COG3267 ExeA Type II secretory 97.9 0.00033 7.1E-09 59.1 12.6 142 11-165 116-267 (269)
179 PRK05342 clpX ATP-dependent pr 97.9 0.0001 2.2E-09 66.3 9.8 49 84-132 295-357 (412)
180 PTZ00111 DNA replication licen 97.9 0.00069 1.5E-08 66.0 15.8 63 30-92 558-634 (915)
181 PRK05201 hslU ATP-dependent pr 97.8 7.6E-05 1.7E-09 67.2 8.5 131 30-169 250-430 (443)
182 COG0464 SpoVK ATPases of the A 97.8 0.00068 1.5E-08 61.8 14.9 129 29-170 335-482 (494)
183 PF01637 Arch_ATPase: Archaeal 97.8 9.6E-05 2.1E-09 59.2 8.2 101 31-140 120-231 (234)
184 PRK10923 glnG nitrogen regulat 97.8 0.00022 4.8E-09 64.3 11.4 127 30-165 233-382 (469)
185 COG1239 ChlI Mg-chelatase subu 97.8 0.00037 7.9E-09 62.4 12.3 132 30-171 145-322 (423)
186 COG0542 clpA ATP-binding subun 97.8 0.00014 3.1E-09 69.6 10.0 118 29-146 593-749 (786)
187 COG3829 RocR Transcriptional r 97.8 0.00013 2.9E-09 67.0 9.1 128 30-165 341-491 (560)
188 PRK09862 putative ATP-dependen 97.8 0.00073 1.6E-08 62.3 13.7 142 30-171 295-492 (506)
189 PRK11361 acetoacetate metaboli 97.7 0.00035 7.6E-09 62.6 11.2 127 30-165 238-387 (457)
190 COG2204 AtoC Response regulato 97.7 0.00019 4.2E-09 65.2 9.3 117 30-152 236-375 (464)
191 KOG0730|consensus 97.7 0.00037 8.1E-09 65.3 11.3 127 29-170 527-673 (693)
192 TIGR00382 clpX endopeptidase C 97.7 0.00019 4.2E-09 64.5 8.7 119 29-147 181-380 (413)
193 KOG0728|consensus 97.6 0.00081 1.8E-08 57.1 10.7 128 29-172 240-389 (404)
194 COG1466 HolA DNA polymerase II 97.6 0.002 4.3E-08 56.2 13.4 130 31-174 76-210 (334)
195 PF00493 MCM: MCM2/3/5 family 97.6 0.00014 3E-09 63.5 6.1 144 30-173 122-328 (331)
196 PF00004 AAA: ATPase family as 97.5 0.00049 1.1E-08 50.5 7.4 69 12-97 45-130 (132)
197 COG1067 LonB Predicted ATP-dep 97.5 0.00098 2.1E-08 63.0 11.0 130 30-170 226-398 (647)
198 KOG1968|consensus 97.5 0.00063 1.4E-08 66.2 9.9 105 30-148 429-536 (871)
199 COG0714 MoxR-like ATPases [Gen 97.5 0.0028 6E-08 55.0 13.1 131 32-170 115-295 (329)
200 KOG2004|consensus 97.5 0.00093 2E-08 63.5 10.3 103 31-146 507-640 (906)
201 KOG0727|consensus 97.5 0.002 4.4E-08 54.8 11.2 127 29-169 248-394 (408)
202 PRK15429 formate hydrogenlyase 97.4 0.0017 3.8E-08 61.7 11.9 116 30-151 471-609 (686)
203 TIGR03689 pup_AAA proteasome A 97.4 0.0033 7.2E-08 58.0 13.0 73 30-115 290-380 (512)
204 COG3604 FhlA Transcriptional r 97.4 0.00092 2E-08 61.1 8.7 116 30-151 318-456 (550)
205 COG1220 HslU ATP-dependent pro 97.3 0.00069 1.5E-08 59.5 7.1 133 30-169 251-431 (444)
206 COG3284 AcoR Transcriptional a 97.2 0.00095 2.1E-08 62.2 7.0 116 30-152 408-541 (606)
207 TIGR01243 CDC48 AAA family ATP 97.1 0.019 4.2E-07 55.1 15.1 90 30-135 272-379 (733)
208 PLN00020 ribulose bisphosphate 97.1 0.0088 1.9E-07 53.4 11.6 87 30-132 213-328 (413)
209 KOG0734|consensus 97.1 0.0062 1.3E-07 56.5 10.6 124 30-168 397-538 (752)
210 COG1241 MCM2 Predicted ATPase 97.0 0.0086 1.9E-07 57.0 11.0 145 29-173 383-594 (682)
211 cd00009 AAA The AAA+ (ATPases 96.9 0.0029 6.4E-08 46.1 5.9 60 29-99 84-151 (151)
212 CHL00195 ycf46 Ycf46; Provisio 96.9 0.03 6.5E-07 51.5 13.6 102 30-146 82-188 (489)
213 KOG0737|consensus 96.9 0.0067 1.5E-07 53.6 8.8 108 28-149 185-309 (386)
214 KOG0730|consensus 96.8 0.02 4.3E-07 54.0 12.1 110 30-153 279-403 (693)
215 TIGR01650 PD_CobS cobaltochela 96.8 0.0074 1.6E-07 52.8 8.5 99 31-132 136-252 (327)
216 PHA02244 ATPase-like protein 96.8 0.022 4.8E-07 50.7 11.5 72 30-104 181-265 (383)
217 COG0465 HflB ATP-dependent Zn 96.7 0.017 3.8E-07 54.1 10.8 124 30-169 243-388 (596)
218 KOG0731|consensus 96.6 0.038 8.2E-07 53.2 12.8 127 29-169 403-551 (774)
219 KOG0726|consensus 96.6 0.0054 1.2E-07 53.2 6.5 123 29-169 278-424 (440)
220 PF13173 AAA_14: AAA domain 96.6 0.003 6.5E-08 47.2 3.9 67 29-105 61-127 (128)
221 KOG0733|consensus 96.5 0.033 7.2E-07 52.5 11.1 89 29-131 282-391 (802)
222 KOG0652|consensus 96.5 0.033 7.3E-07 47.8 10.0 123 30-169 265-410 (424)
223 KOG0740|consensus 96.4 0.027 5.8E-07 50.9 9.3 91 29-132 245-352 (428)
224 KOG0482|consensus 96.3 0.047 1E-06 50.5 10.5 140 31-171 441-638 (721)
225 KOG0478|consensus 96.2 0.13 2.9E-06 49.0 13.1 70 30-103 527-616 (804)
226 PF07728 AAA_5: AAA domain (dy 96.1 0.0072 1.6E-07 45.3 3.6 26 30-55 66-91 (139)
227 KOG0745|consensus 96.1 0.049 1.1E-06 49.5 9.4 70 82-151 423-508 (564)
228 COG3283 TyrR Transcriptional r 96.0 0.088 1.9E-06 47.0 10.5 116 30-151 294-432 (511)
229 KOG0738|consensus 96.0 0.055 1.2E-06 48.6 9.3 89 29-131 304-412 (491)
230 KOG0742|consensus 95.9 0.033 7.2E-07 50.4 7.7 83 17-115 434-530 (630)
231 PRK04841 transcriptional regul 95.9 0.11 2.5E-06 50.2 11.8 100 30-146 122-227 (903)
232 COG1219 ClpX ATP-dependent pro 95.8 0.043 9.3E-07 48.2 7.7 128 4-132 138-346 (408)
233 KOG0735|consensus 95.7 0.31 6.6E-06 47.0 13.5 149 11-174 477-651 (952)
234 COG5271 MDN1 AAA ATPase contai 95.6 0.066 1.4E-06 56.0 8.9 84 32-131 958-1060(4600)
235 KOG0732|consensus 95.4 0.13 2.8E-06 51.2 10.3 91 29-132 363-470 (1080)
236 KOG0481|consensus 95.4 0.18 3.9E-06 46.9 10.5 27 30-56 429-455 (729)
237 KOG0739|consensus 95.4 0.058 1.3E-06 47.1 6.9 90 30-132 226-331 (439)
238 KOG2170|consensus 95.4 0.21 4.5E-06 43.5 10.3 124 30-169 179-317 (344)
239 KOG0480|consensus 95.3 0.27 5.9E-06 46.6 11.3 142 30-172 443-644 (764)
240 KOG0479|consensus 95.2 0.23 4.9E-06 46.9 10.6 64 117-180 573-653 (818)
241 KOG0733|consensus 95.2 0.061 1.3E-06 50.8 6.9 90 29-131 604-711 (802)
242 KOG0729|consensus 95.1 0.21 4.5E-06 43.1 9.3 116 31-164 272-411 (435)
243 PF14532 Sigma54_activ_2: Sigm 94.9 0.065 1.4E-06 40.4 5.3 37 30-66 70-108 (138)
244 PF07726 AAA_3: ATPase family 94.9 0.05 1.1E-06 41.6 4.5 54 30-93 63-130 (131)
245 cd07979 TAF9 TATA Binding Prot 94.7 0.24 5.3E-06 37.0 7.9 62 108-173 6-68 (117)
246 PF13401 AAA_22: AAA domain; P 94.7 0.071 1.5E-06 39.0 5.0 34 31-65 89-123 (131)
247 PF14516 AAA_35: AAA-like doma 94.7 0.27 5.8E-06 42.9 9.3 99 30-144 128-239 (331)
248 PF07724 AAA_2: AAA domain (Cd 94.7 0.045 9.9E-07 43.3 4.1 36 31-66 70-128 (171)
249 PF00931 NB-ARC: NB-ARC domain 94.6 0.18 3.9E-06 42.0 7.8 112 13-147 90-205 (287)
250 PF07693 KAP_NTPase: KAP famil 94.4 1.3 2.8E-05 37.6 12.7 85 30-115 173-265 (325)
251 PF00158 Sigma54_activat: Sigm 94.4 0.057 1.2E-06 42.6 4.0 27 30-56 94-120 (168)
252 PRK11331 5-methylcytosine-spec 94.3 0.25 5.4E-06 45.2 8.5 73 30-111 273-370 (459)
253 smart00763 AAA_PrkA PrkA AAA d 94.0 0.25 5.4E-06 43.9 7.7 96 30-131 237-348 (361)
254 PF10923 DUF2791: P-loop Domai 93.6 0.56 1.2E-05 42.4 9.3 94 32-132 242-371 (416)
255 PF05673 DUF815: Protein of un 93.3 4.4 9.5E-05 34.2 13.7 117 30-147 107-245 (249)
256 PF05872 DUF853: Bacterial pro 93.3 0.18 3.9E-06 46.1 5.7 80 21-114 247-335 (502)
257 smart00803 TAF TATA box bindin 93.1 0.54 1.2E-05 31.4 6.4 56 109-168 8-64 (65)
258 PF02291 TFIID-31kDa: Transcri 92.9 0.73 1.6E-05 35.1 7.6 63 108-174 17-80 (129)
259 PF12846 AAA_10: AAA-like doma 92.8 0.27 5.8E-06 40.8 5.6 67 28-107 219-294 (304)
260 PF05729 NACHT: NACHT domain 91.6 1.3 2.8E-05 33.2 7.8 68 31-113 83-163 (166)
261 PF02969 TAF: TATA box binding 91.6 1.5 3.3E-05 29.4 7.1 57 108-168 8-65 (66)
262 PF09077 Phage-MuB_C: Mu B tra 91.5 0.16 3.5E-06 35.3 2.4 70 94-169 6-76 (78)
263 PF13654 AAA_32: AAA domain; P 91.2 0.59 1.3E-05 43.4 6.4 128 31-169 334-504 (509)
264 cd07981 TAF12 TATA Binding Pro 90.9 1.9 4.2E-05 29.2 7.3 64 100-169 2-65 (72)
265 COG2842 Uncharacterized ATPase 90.7 6.1 0.00013 34.2 11.7 125 30-165 166-293 (297)
266 COG1373 Predicted ATPase (AAA+ 90.5 11 0.00024 33.7 13.7 67 30-107 95-161 (398)
267 KOG0651|consensus 89.9 1.1 2.4E-05 39.4 6.5 89 29-131 225-336 (388)
268 PRK13695 putative NTPase; Prov 89.8 0.78 1.7E-05 35.7 5.2 72 29-113 96-172 (174)
269 smart00576 BTP Bromodomain tra 89.8 3.9 8.4E-05 27.9 8.1 61 105-169 8-69 (77)
270 KOG1051|consensus 89.3 2.2 4.8E-05 42.1 8.8 85 29-113 660-784 (898)
271 PF10236 DAP3: Mitochondrial r 89.2 6.3 0.00014 34.0 10.8 47 94-141 258-307 (309)
272 KOG0744|consensus 88.7 1.9 4.1E-05 38.2 7.1 71 33-115 254-342 (423)
273 PF15630 CENP-S: Kinetochore c 88.4 0.97 2.1E-05 31.2 4.2 47 116-166 22-68 (76)
274 PF00808 CBFD_NFYB_HMF: Histon 88.3 3.4 7.5E-05 27.0 6.8 61 102-168 5-65 (65)
275 COG2036 HHT1 Histones H3 and H 87.0 3.6 7.9E-05 29.4 6.6 64 100-170 20-83 (91)
276 KOG0736|consensus 86.9 25 0.00054 34.7 13.9 76 29-117 490-580 (953)
277 KOG2543|consensus 86.8 19 0.00041 32.6 12.3 112 32-163 118-247 (438)
278 KOG0735|consensus 85.5 20 0.00043 35.2 12.4 105 30-147 761-884 (952)
279 KOG3334|consensus 85.2 6.9 0.00015 30.3 7.7 55 112-170 22-77 (148)
280 COG2607 Predicted ATPase (AAA+ 85.0 23 0.00051 30.2 12.2 116 30-148 140-278 (287)
281 PF07524 Bromo_TP: Bromodomain 84.9 9.7 0.00021 25.8 8.3 62 104-169 7-69 (77)
282 TIGR02562 cas3_yersinia CRISPR 84.9 1.7 3.6E-05 43.7 5.3 36 30-65 594-632 (1110)
283 COG0606 Predicted ATPase with 84.9 13 0.00028 34.4 10.6 28 30-57 284-311 (490)
284 PF13191 AAA_16: AAA ATPase do 84.8 0.87 1.9E-05 35.0 2.8 54 5-58 126-179 (185)
285 PF04851 ResIII: Type III rest 84.6 1.3 2.9E-05 33.6 3.8 22 30-51 147-169 (184)
286 KOG0736|consensus 84.2 21 0.00045 35.2 12.0 88 30-132 765-875 (953)
287 PF00125 Histone: Core histone 84.0 4.5 9.9E-05 27.0 5.8 62 104-169 10-73 (75)
288 PF03969 AFG1_ATPase: AFG1-lik 83.8 1.7 3.6E-05 38.6 4.4 58 31-100 129-201 (362)
289 PF07652 Flavi_DEAD: Flaviviru 83.6 5.2 0.00011 31.2 6.5 38 28-65 94-133 (148)
290 PRK09694 helicase Cas3; Provis 83.4 1.7 3.6E-05 43.0 4.6 37 29-65 439-478 (878)
291 KOG0741|consensus 82.4 18 0.00039 34.3 10.5 96 31-148 600-720 (744)
292 PF01078 Mg_chelatase: Magnesi 82.2 1.5 3.2E-05 36.0 3.2 28 30-57 107-134 (206)
293 PRK04296 thymidine kinase; Pro 81.2 8.8 0.00019 30.5 7.4 36 30-66 79-114 (190)
294 TIGR02746 TraC-F-type type-IV 80.5 5.4 0.00012 38.6 6.9 86 29-131 637-733 (797)
295 cd00046 DEXDc DEAD-like helica 80.3 1.6 3.5E-05 30.8 2.6 20 29-48 103-122 (144)
296 PF04665 Pox_A32: Poxvirus A32 80.1 20 0.00044 30.1 9.4 70 29-112 98-169 (241)
297 smart00382 AAA ATPases associa 80.0 4.1 8.8E-05 28.6 4.6 37 30-66 79-124 (148)
298 PRK06921 hypothetical protein; 79.8 7.3 0.00016 32.9 6.7 35 30-66 178-223 (266)
299 PF03266 NTPase_1: NTPase; In 79.7 2.1 4.6E-05 33.6 3.2 65 30-107 96-165 (168)
300 PF13604 AAA_30: AAA domain; P 79.3 2.2 4.7E-05 34.2 3.2 36 30-66 94-129 (196)
301 COG2909 MalT ATP-dependent tra 79.1 41 0.00089 33.4 12.1 100 31-147 131-236 (894)
302 PF13304 AAA_21: AAA domain; P 78.9 3.8 8.1E-05 31.9 4.5 36 31-66 259-297 (303)
303 cd08050 TAF6 TATA Binding Prot 78.9 8.7 0.00019 33.7 7.2 58 109-170 5-63 (343)
304 PRK08116 hypothetical protein; 78.3 2.3 5E-05 36.0 3.3 59 31-101 180-250 (268)
305 PF12775 AAA_7: P-loop contain 78.0 5.1 0.00011 34.0 5.3 74 31-114 102-194 (272)
306 cd00076 H4 Histone H4, one of 77.5 22 0.00047 25.1 7.5 63 99-169 13-76 (85)
307 PF13335 Mg_chelatase_2: Magne 77.0 11 0.00023 27.0 6.0 51 119-169 42-94 (96)
308 PF12780 AAA_8: P-loop contain 76.2 39 0.00085 28.6 10.2 113 3-131 67-227 (268)
309 PLN00035 histone H4; Provision 76.1 24 0.00052 25.8 7.6 67 96-170 26-93 (103)
310 PF03847 TFIID_20kDa: Transcri 75.9 8.5 0.00018 25.9 4.9 60 104-169 4-63 (68)
311 TIGR01448 recD_rel helicase, p 75.9 3.7 8E-05 39.7 4.3 36 29-66 416-451 (720)
312 KOG1051|consensus 75.8 3.6 7.7E-05 40.8 4.1 130 7-149 262-408 (898)
313 PRK10536 hypothetical protein; 75.3 4.7 0.0001 34.3 4.3 36 29-66 176-211 (262)
314 PF00270 DEAD: DEAD/DEAH box h 74.8 2.4 5.1E-05 32.0 2.2 36 30-65 120-159 (169)
315 COG1435 Tdk Thymidine kinase [ 74.6 12 0.00026 30.6 6.3 34 30-65 83-117 (201)
316 KOG0477|consensus 73.9 53 0.0011 31.8 11.0 64 29-92 546-623 (854)
317 KOG0743|consensus 73.8 35 0.00076 31.4 9.6 71 30-113 287-383 (457)
318 COG1485 Predicted ATPase [Gene 73.3 4.7 0.0001 35.8 3.9 36 31-66 132-169 (367)
319 KOG3928|consensus 72.8 74 0.0016 29.1 11.3 121 11-139 300-452 (461)
320 PF12774 AAA_6: Hydrolytic ATP 72.5 53 0.0011 27.2 9.9 85 12-111 73-178 (231)
321 KOG2228|consensus 71.2 12 0.00026 33.5 5.8 73 31-113 138-219 (408)
322 smart00487 DEXDc DEAD-like hel 70.7 3.3 7.3E-05 31.2 2.2 14 30-43 130-143 (201)
323 PTZ00015 histone H4; Provision 70.4 31 0.00067 25.2 7.0 66 96-169 27-93 (102)
324 PRK06526 transposase; Provisio 69.7 6.3 0.00014 33.1 3.8 37 30-66 160-199 (254)
325 COG3899 Predicted ATPase [Gene 68.9 42 0.0009 33.3 9.7 103 30-148 155-265 (849)
326 PF00072 Response_reg: Respons 68.6 8.5 0.00018 26.6 3.8 69 30-110 44-112 (112)
327 COG4098 comFA Superfamily II D 68.3 6.4 0.00014 35.2 3.6 35 30-65 203-241 (441)
328 PF09848 DUF2075: Uncharacteri 68.2 4.2 9E-05 35.5 2.5 29 28-56 82-118 (352)
329 PRK12377 putative replication 67.2 16 0.00034 30.7 5.7 36 30-66 164-204 (248)
330 PLN03210 Resistant to P. syrin 67.1 86 0.0019 32.0 11.8 94 31-147 298-398 (1153)
331 PHA03333 putative ATPase subun 66.7 10 0.00022 36.8 4.8 36 30-65 295-330 (752)
332 COG1618 Predicted nucleotide k 66.4 62 0.0013 26.0 8.5 60 31-103 102-165 (179)
333 PF05707 Zot: Zonular occluden 66.2 4.9 0.00011 32.0 2.4 49 30-92 80-137 (193)
334 PF07034 ORC3_N: Origin recogn 65.9 90 0.002 27.1 10.8 113 29-148 199-318 (330)
335 TIGR00929 VirB4_CagE type IV s 65.7 13 0.00029 35.7 5.6 89 29-131 629-721 (785)
336 TIGR01587 cas3_core CRISPR-ass 65.2 7.9 0.00017 33.4 3.6 35 31-65 126-163 (358)
337 PRK06835 DNA replication prote 64.4 6 0.00013 34.6 2.7 35 30-66 247-287 (329)
338 PHA00729 NTP-binding motif con 64.0 4.2 9.1E-05 33.8 1.6 30 83-112 110-139 (226)
339 PHA03368 DNA packaging termina 63.5 13 0.00027 36.0 4.8 34 30-63 353-386 (738)
340 PF02562 PhoH: PhoH-like prote 63.5 7.6 0.00017 31.8 3.0 35 30-66 120-154 (205)
341 TIGR01447 recD exodeoxyribonuc 63.3 9 0.00019 36.2 3.8 36 29-66 259-294 (586)
342 PRK00103 rRNA large subunit me 62.7 72 0.0016 24.9 8.3 65 31-109 69-137 (157)
343 COG3950 Predicted ATP-binding 62.5 2.9 6.2E-05 37.4 0.3 39 28-66 294-334 (440)
344 COG4650 RtcR Sigma54-dependent 62.3 4 8.7E-05 35.9 1.2 27 30-56 283-309 (531)
345 TIGR00596 rad1 DNA repair prot 60.2 59 0.0013 32.2 8.9 81 31-124 33-126 (814)
346 TIGR00246 tRNA_RlmH_YbeA rRNA 60.2 26 0.00056 27.3 5.3 64 31-109 67-134 (153)
347 KOG0870|consensus 59.6 88 0.0019 24.9 9.1 59 107-169 18-76 (172)
348 smart00488 DEXDc2 DEAD-like he 59.1 7.5 0.00016 33.2 2.4 21 29-49 236-256 (289)
349 smart00489 DEXDc3 DEAD-like he 59.1 7.5 0.00016 33.2 2.4 21 29-49 236-256 (289)
350 PF06733 DEAD_2: DEAD_2; Inte 58.5 4.9 0.00011 31.3 1.1 18 28-45 144-161 (174)
351 COG0218 Predicted GTPase [Gene 57.8 1E+02 0.0023 25.2 9.9 57 7-65 87-143 (200)
352 PF03354 Terminase_1: Phage Te 57.0 24 0.00052 32.2 5.4 37 30-66 124-161 (477)
353 TIGR03744 traC_PFL_4706 conjug 56.9 47 0.001 33.0 7.7 83 30-131 734-823 (893)
354 PF13558 SbcCD_C: Putative exo 56.4 18 0.00038 25.3 3.6 27 28-54 62-89 (90)
355 COG1061 SSL2 DNA or RNA helica 55.5 15 0.00032 33.4 3.7 29 29-57 146-174 (442)
356 COG1203 CRISPR-associated heli 54.3 9.4 0.0002 37.0 2.4 38 28-65 337-378 (733)
357 PF09415 CENP-X: CENP-S associ 54.3 3.3 7.1E-05 28.3 -0.5 53 114-170 14-67 (72)
358 PRK10875 recD exonuclease V su 53.6 14 0.0003 35.2 3.3 36 29-66 265-300 (615)
359 PRK13889 conjugal transfer rel 53.3 31 0.00066 34.8 5.8 37 29-66 433-469 (988)
360 PF02590 SPOUT_MTase: Predicte 52.9 36 0.00078 26.5 5.1 65 31-109 69-137 (155)
361 cd00561 CobA_CobO_BtuR ATP:cor 52.3 70 0.0015 25.0 6.6 38 29-66 95-136 (159)
362 TIGR02768 TraA_Ti Ti-type conj 52.2 34 0.00073 33.3 5.8 36 29-65 439-474 (744)
363 TIGR00643 recG ATP-dependent D 52.0 17 0.00038 34.4 3.7 24 31-54 359-382 (630)
364 PHA00350 putative assembly pro 51.9 19 0.00041 32.5 3.8 12 30-41 82-93 (399)
365 PF00580 UvrD-helicase: UvrD/R 50.9 20 0.00043 29.6 3.6 34 30-65 257-290 (315)
366 PHA01513 mnt Mnt 50.0 75 0.0016 22.3 5.7 30 102-131 13-42 (82)
367 PF00176 SNF2_N: SNF2 family N 49.3 10 0.00022 31.2 1.6 56 30-101 135-193 (299)
368 PHA02558 uvsW UvsW helicase; P 49.3 18 0.00038 33.3 3.3 24 30-53 223-246 (501)
369 PF13175 AAA_15: AAA ATPase do 48.6 31 0.00068 29.9 4.6 35 32-66 372-410 (415)
370 COG1875 NYN ribonuclease and A 47.1 20 0.00043 32.4 3.0 37 28-66 350-386 (436)
371 smart00417 H4 Histone H4. 47.0 92 0.002 21.3 6.4 59 99-165 13-72 (74)
372 PHA02562 46 endonuclease subun 46.9 37 0.00079 31.3 5.0 38 29-66 496-535 (562)
373 PRK11054 helD DNA helicase IV; 46.8 69 0.0015 30.9 6.9 37 29-65 430-466 (684)
374 PF00265 TK: Thymidine kinase; 46.8 29 0.00063 27.5 3.8 34 30-65 77-110 (176)
375 PRK08181 transposase; Validate 46.6 26 0.00056 29.7 3.7 36 30-66 168-207 (269)
376 TIGR00708 cobA cob(I)alamin ad 46.3 1.2E+02 0.0026 24.1 7.2 35 29-66 97-138 (173)
377 PRK13826 Dtr system oriT relax 46.2 31 0.00066 35.3 4.6 36 30-66 469-504 (1102)
378 PRK09183 transposase/IS protei 46.1 27 0.00059 29.2 3.7 36 30-66 165-204 (259)
379 PRK05986 cob(I)alamin adenolsy 45.7 97 0.0021 25.1 6.7 38 29-66 115-156 (191)
380 COG4086 Predicted secreted pro 45.4 1.8E+02 0.0039 25.2 8.4 53 96-148 206-263 (299)
381 KOG1808|consensus 44.9 36 0.00077 36.6 4.9 72 31-113 509-599 (1856)
382 PRK04914 ATP-dependent helicas 44.9 36 0.00077 34.3 4.8 14 29-42 272-285 (956)
383 PTZ00424 helicase 45; Provisio 44.8 21 0.00046 31.2 2.9 14 30-43 171-184 (401)
384 PHA03311 helicase-primase subu 44.8 97 0.0021 30.5 7.4 98 31-131 206-337 (828)
385 cd03287 ABC_MSH3_euk MutS3 hom 44.2 57 0.0012 26.8 5.2 37 30-66 111-152 (222)
386 TIGR00614 recQ_fam ATP-depende 43.5 41 0.00088 30.5 4.7 36 30-65 128-170 (470)
387 PF03474 DMA: DMRTA motif; In 42.7 41 0.00089 20.2 3.0 23 121-144 16-38 (39)
388 cd01128 rho_factor Transcripti 41.8 85 0.0018 26.3 6.0 12 31-42 105-116 (249)
389 PHA03372 DNA packaging termina 41.3 42 0.00092 32.2 4.4 36 29-65 299-334 (668)
390 PRK02228 V-type ATP synthase s 40.7 1.3E+02 0.0027 21.5 6.0 33 31-65 46-78 (100)
391 TIGR01389 recQ ATP-dependent D 40.6 47 0.001 31.1 4.7 35 31-65 129-170 (591)
392 PF02572 CobA_CobO_BtuR: ATP:c 40.4 1.2E+02 0.0026 24.1 6.3 38 29-66 96-137 (172)
393 PF02845 CUE: CUE domain; Int 40.4 64 0.0014 19.0 3.8 26 119-145 14-39 (42)
394 KOG4849|consensus 39.6 62 0.0014 29.0 4.9 52 96-152 353-404 (498)
395 PRK13539 cytochrome c biogenes 39.3 44 0.00096 26.5 3.8 37 30-66 146-185 (207)
396 PF02689 Herpes_Helicase: Heli 39.2 1E+02 0.0023 30.3 6.7 44 86-131 277-327 (818)
397 PF02463 SMC_N: RecF/RecN/SMC 38.6 71 0.0015 25.4 4.9 37 30-66 159-197 (220)
398 PRK10869 recombination and rep 38.6 3.3E+02 0.0072 25.5 10.0 37 30-66 453-491 (553)
399 PRK13898 type IV secretion sys 38.4 1.5E+02 0.0033 29.0 8.0 87 29-131 642-733 (800)
400 PHA02774 E1; Provisional 38.2 57 0.0012 31.2 4.8 78 31-118 481-586 (613)
401 cd03769 SR_IS607_transposase_l 38.1 1E+02 0.0022 23.0 5.4 24 31-54 64-87 (134)
402 cd01120 RecA-like_NTPases RecA 37.9 38 0.00082 24.7 3.0 38 29-66 85-135 (165)
403 PRK11747 dinG ATP-dependent DN 37.8 27 0.00059 33.7 2.7 18 30-47 247-264 (697)
404 PF08369 PCP_red: Proto-chloro 37.4 94 0.002 19.0 4.2 26 142-167 18-44 (45)
405 PRK02362 ski2-like helicase; P 37.0 50 0.0011 31.9 4.4 36 30-65 138-178 (737)
406 smart00546 CUE Domain that may 36.9 74 0.0016 18.8 3.7 26 119-145 15-40 (43)
407 PRK07952 DNA replication prote 36.7 89 0.0019 26.1 5.3 36 30-66 163-203 (244)
408 cd03278 ABC_SMC_barmotin Barmo 36.7 92 0.002 24.7 5.3 37 30-66 136-174 (197)
409 KOG3902|consensus 36.7 1E+02 0.0022 27.0 5.6 57 120-182 43-102 (352)
410 cd03247 ABCC_cytochrome_bd The 36.5 93 0.002 23.9 5.2 38 29-66 116-155 (178)
411 TIGR00603 rad25 DNA repair hel 36.5 50 0.0011 32.2 4.3 24 30-53 376-399 (732)
412 smart00428 H3 Histone H3. 36.4 1.1E+02 0.0023 22.5 5.0 49 116-168 50-98 (105)
413 cd00267 ABC_ATPase ABC (ATP-bi 36.2 70 0.0015 24.0 4.4 37 30-66 99-138 (157)
414 PRK07414 cob(I)yrinic acid a,c 36.1 1.4E+02 0.0031 23.9 6.1 37 30-66 116-156 (178)
415 cd00074 H2A Histone 2A; H2A is 35.5 62 0.0013 24.1 3.7 61 103-169 24-84 (115)
416 cd00268 DEADc DEAD-box helicas 35.3 35 0.00075 26.6 2.6 13 31-43 145-157 (203)
417 COG2197 CitB Response regulato 35.3 1.5E+02 0.0034 23.8 6.5 89 29-131 46-135 (211)
418 PRK10917 ATP-dependent DNA hel 35.2 41 0.00089 32.3 3.5 21 30-50 384-404 (681)
419 PF13086 AAA_11: AAA domain; P 35.1 54 0.0012 25.5 3.7 44 29-90 192-235 (236)
420 PF04084 ORC2: Origin recognit 34.9 3.1E+02 0.0067 23.9 14.7 138 30-179 138-293 (326)
421 KOG1142|consensus 34.9 55 0.0012 27.8 3.7 63 100-168 155-217 (258)
422 PRK13538 cytochrome c biogenes 34.5 72 0.0016 25.2 4.3 38 29-66 147-187 (204)
423 PRK11414 colanic acid/biofilm 34.3 1.2E+02 0.0026 24.2 5.7 65 103-168 14-86 (221)
424 PRK13766 Hef nuclease; Provisi 34.2 1.2E+02 0.0027 29.2 6.6 36 30-65 132-169 (773)
425 PF05763 DUF835: Protein of un 33.9 1.9E+02 0.004 22.0 6.3 56 6-66 57-119 (136)
426 PRK10263 DNA translocase FtsK; 33.9 78 0.0017 33.1 5.2 92 29-131 1140-1259(1355)
427 TIGR00604 rad3 DNA repair heli 33.6 27 0.00059 33.6 2.0 14 30-43 221-234 (705)
428 PRK10590 ATP-dependent RNA hel 33.6 36 0.00077 30.8 2.7 25 31-55 151-176 (456)
429 PHA00012 I assembly protein 33.4 75 0.0016 28.3 4.5 48 29-91 81-138 (361)
430 KOG2549|consensus 33.1 1.7E+02 0.0037 27.7 6.9 55 112-170 20-75 (576)
431 PLN00206 DEAD-box ATP-dependen 33.1 39 0.00083 31.2 2.8 13 31-43 272-284 (518)
432 PRK13541 cytochrome c biogenes 32.9 1.1E+02 0.0025 23.8 5.2 38 29-66 141-181 (195)
433 PRK01172 ski2-like helicase; P 32.6 67 0.0014 30.6 4.4 13 30-42 136-148 (674)
434 KOG2383|consensus 32.6 75 0.0016 29.1 4.4 37 31-67 195-233 (467)
435 PRK11057 ATP-dependent DNA hel 32.6 68 0.0015 30.3 4.4 36 30-65 140-182 (607)
436 TIGR03338 phnR_burk phosphonat 32.6 1E+02 0.0022 24.4 4.9 65 103-168 14-86 (212)
437 PRK13853 type IV secretion sys 32.5 2.1E+02 0.0045 28.1 7.8 106 8-130 607-718 (789)
438 PRK14084 two-component respons 32.5 1.5E+02 0.0033 23.5 6.0 71 30-114 47-117 (246)
439 PRK13709 conjugal transfer nic 32.4 1.6E+02 0.0036 31.8 7.4 37 29-66 1062-1098(1747)
440 TIGR03158 cas3_cyano CRISPR-as 32.3 61 0.0013 28.3 3.9 14 30-43 146-159 (357)
441 PF00488 MutS_V: MutS domain V 32.2 1.9E+02 0.0042 23.8 6.6 37 30-66 123-164 (235)
442 cd03216 ABC_Carb_Monos_I This 32.2 97 0.0021 23.6 4.6 38 29-66 100-140 (163)
443 COG4586 ABC-type uncharacteriz 32.0 69 0.0015 27.9 3.9 38 29-66 174-215 (325)
444 cd03273 ABC_SMC2_euk Eukaryoti 31.8 1.2E+02 0.0025 24.9 5.3 37 30-66 189-227 (251)
445 PRK13546 teichoic acids export 31.4 79 0.0017 26.4 4.3 38 29-66 161-201 (264)
446 cd03223 ABCD_peroxisomal_ALDP 31.4 1.3E+02 0.0027 23.0 5.1 37 29-66 109-146 (166)
447 KOG0994|consensus 31.3 1.1E+02 0.0024 31.8 5.6 73 91-169 1500-1573(1758)
448 cd03228 ABCC_MRP_Like The MRP 31.1 1.3E+02 0.0029 22.9 5.3 38 29-66 114-153 (171)
449 cd03262 ABC_HisP_GlnQ_permease 31.0 89 0.0019 24.6 4.3 37 30-66 154-193 (213)
450 PRK11534 DNA-binding transcrip 30.9 1.1E+02 0.0023 24.5 4.8 67 102-169 9-83 (224)
451 cd03269 ABC_putative_ATPase Th 30.8 84 0.0018 24.8 4.2 38 29-66 146-186 (210)
452 TIGR00767 rho transcription te 30.7 91 0.002 28.4 4.7 28 12-43 242-269 (415)
453 PF14630 ORC5_C: Origin recogn 30.5 2.4E+02 0.0053 23.6 7.1 54 95-148 1-65 (271)
454 PRK06369 nac nascent polypepti 30.5 2.2E+02 0.0047 21.3 5.9 40 99-145 74-113 (115)
455 cd03285 ABC_MSH2_euk MutS2 hom 30.5 99 0.0021 25.2 4.6 37 30-66 110-151 (222)
456 PF06207 DUF1002: Protein of u 30.4 1E+02 0.0022 25.7 4.6 38 94-131 166-203 (225)
457 TIGR00634 recN DNA repair prot 30.4 4E+02 0.0088 24.9 9.1 37 30-66 463-501 (563)
458 PRK10643 DNA-binding transcrip 30.3 1.7E+02 0.0037 22.2 5.8 72 30-114 45-117 (222)
459 COG1111 MPH1 ERCC4-like helica 30.2 64 0.0014 30.2 3.7 36 31-66 133-170 (542)
460 cd03245 ABCC_bacteriocin_expor 30.0 1.2E+02 0.0026 24.0 5.0 38 29-66 158-197 (220)
461 cd03227 ABC_Class2 ABC-type Cl 29.9 1.2E+02 0.0025 23.1 4.7 35 30-66 100-139 (162)
462 cd03221 ABCF_EF-3 ABCF_EF-3 E 29.9 1.5E+02 0.0033 22.0 5.3 36 30-66 89-125 (144)
463 PTZ00293 thymidine kinase; Pro 29.0 1.3E+02 0.0028 24.8 4.9 34 30-66 78-111 (211)
464 PF10431 ClpB_D2-small: C-term 29.0 49 0.0011 22.2 2.2 16 117-132 27-42 (81)
465 cd03286 ABC_MSH6_euk MutS6 hom 28.9 1.4E+02 0.0031 24.3 5.2 37 30-66 110-151 (218)
466 cd03246 ABCC_Protease_Secretio 28.9 1.2E+02 0.0025 23.3 4.6 38 29-66 114-154 (173)
467 PRK13543 cytochrome c biogenes 28.8 1E+02 0.0022 24.5 4.3 38 29-66 155-195 (214)
468 KOG0952|consensus 28.6 62 0.0013 33.0 3.5 35 31-65 240-282 (1230)
469 COG0396 sufC Cysteine desulfur 28.5 2.1E+02 0.0045 24.3 6.1 38 29-66 162-202 (251)
470 TIGR00376 DNA helicase, putati 28.4 71 0.0015 30.6 3.8 43 29-91 361-404 (637)
471 TIGR03817 DECH_helic helicase/ 28.4 77 0.0017 30.8 4.1 12 31-42 159-170 (742)
472 TIGR03117 cas_csf4 CRISPR-asso 28.3 44 0.00095 32.1 2.4 20 29-48 206-225 (636)
473 COG1802 GntR Transcriptional r 28.0 2.3E+02 0.005 22.8 6.4 68 102-170 18-93 (230)
474 cd03239 ABC_SMC_head The struc 28.0 1.3E+02 0.0029 23.4 4.8 37 30-66 117-156 (178)
475 PRK15177 Vi polysaccharide exp 28.0 1E+02 0.0022 24.7 4.2 38 29-66 122-161 (213)
476 KOG0385|consensus 27.9 52 0.0011 32.5 2.7 34 31-65 291-325 (971)
477 cd03279 ABC_sbcCD SbcCD and ot 27.8 1.3E+02 0.0027 24.1 4.7 37 30-66 152-191 (213)
478 cd03292 ABC_FtsE_transporter F 27.7 1.1E+02 0.0024 24.0 4.4 38 29-66 154-194 (214)
479 TIGR00264 alpha-NAC-related pr 27.6 2.4E+02 0.0052 21.1 5.7 40 99-145 76-115 (116)
480 TIGR01407 dinG_rel DnaQ family 27.6 40 0.00088 33.2 2.1 20 29-48 440-459 (850)
481 TIGR02315 ABC_phnC phosphonate 27.6 1.4E+02 0.0029 24.1 4.9 37 30-66 164-204 (243)
482 cd03251 ABCC_MsbA MsbA is an e 27.5 1.5E+02 0.0032 23.8 5.1 38 29-66 156-195 (234)
483 TIGR02211 LolD_lipo_ex lipopro 27.5 1.5E+02 0.0032 23.5 5.1 38 29-66 159-200 (221)
484 COG0433 HerA helicase [Replica 27.3 1.3E+02 0.0027 26.9 5.1 82 32-131 394-483 (520)
485 PF02269 TFIID-18kDa: Transcri 27.3 69 0.0015 22.7 2.7 45 120-168 20-64 (93)
486 COG4178 ABC-type uncharacteriz 27.1 1.1E+02 0.0023 29.4 4.6 38 30-67 534-573 (604)
487 PF15511 CENP-T: Centromere ki 27.0 1.9E+02 0.0041 26.2 6.1 67 93-163 345-414 (414)
488 COG1674 FtsK DNA segregation A 27.0 53 0.0011 32.5 2.8 72 27-110 637-715 (858)
489 PF03869 Arc: Arc-like DNA bin 26.7 71 0.0015 19.9 2.4 29 103-131 13-41 (50)
490 cd03254 ABCC_Glucan_exporter_l 26.5 1.6E+02 0.0034 23.5 5.1 38 29-66 157-196 (229)
491 PRK14249 phosphate ABC transpo 26.5 1.4E+02 0.003 24.3 4.9 38 29-66 165-204 (251)
492 COG1200 RecG RecG-like helicas 26.5 1E+02 0.0022 29.9 4.4 33 31-65 386-419 (677)
493 PRK14251 phosphate ABC transpo 26.3 1.3E+02 0.0027 24.5 4.6 37 30-66 166-204 (251)
494 PF15610 PRTase_3: PRTase ComF 26.2 2.3E+02 0.005 24.3 6.1 81 31-131 140-223 (274)
495 TIGR03005 ectoine_ehuA ectoine 26.2 1.3E+02 0.0027 24.6 4.6 37 30-66 165-205 (252)
496 cd03225 ABC_cobalt_CbiO_domain 26.0 1.1E+02 0.0025 23.9 4.1 37 30-66 153-192 (211)
497 PRK08074 bifunctional ATP-depe 25.9 47 0.001 33.2 2.2 19 29-47 455-473 (928)
498 cd03235 ABC_Metallic_Cations A 25.8 1.2E+02 0.0026 23.9 4.3 38 29-66 150-190 (213)
499 COG3910 Predicted ATPase [Gene 25.8 1.3E+02 0.0028 25.0 4.3 35 30-66 147-186 (233)
500 TIGR02673 FtsE cell division A 25.6 1.7E+02 0.0036 23.0 5.1 38 29-66 155-195 (214)
No 1
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=100.00 E-value=2.7e-37 Score=265.83 Aligned_cols=183 Identities=54% Similarity=0.892 Sum_probs=178.1
Q ss_pred hhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCC
Q psy18185 6 SDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIP 85 (190)
Q Consensus 6 ~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~ 85 (190)
++++|+++|+.|++|..+|+.++.+|||||||+|.|+-+||.+|++++|+...|++|+|||++..+++||| ..+||++|
T Consensus 268 ~~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd-~~sPhGIP 346 (450)
T COG1224 268 TDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTD-IESPHGIP 346 (450)
T ss_pred CHHHHHHHHHHHHHHHhcCcEEeecceEEEechhhhhHHHHHHHHHHhhcccCcEEEEEcCCceeeecccC-CcCCCCCC
Confidence 68999999999999999999999999999999999999999999999999988999999999999999995 88999999
Q ss_pred hhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 86 LDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 86 ~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.++++|.++++..||+.+|++.||+.||+.+++.++++|++++++.+...++|||+++|.-+...|+++|+..|.+++|.
T Consensus 347 ~DlLDRllII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe 426 (450)
T COG1224 347 LDLLDRLLIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVE 426 (450)
T ss_pred HhhhhheeEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHH
Confidence 99999999999999999999999999999999999999999999998788999999999999999999999999999999
Q ss_pred HHHHhccChHHHHHHhHHhhhhhc
Q psy18185 166 EVSTLFLDAKSSARILTENKDKFM 189 (190)
Q Consensus 166 ~~~~~f~~~~~~~~~~~~~~~~~~ 189 (190)
++..+|+|..+++++++.++..|+
T Consensus 427 ~a~~lF~D~krSv~~v~~~~~~~~ 450 (450)
T COG1224 427 RAKELFLDVKRSVEYVEKYEGLLL 450 (450)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhcC
Confidence 999999999999999999998875
No 2
>KOG2680|consensus
Probab=100.00 E-value=7.9e-35 Score=246.60 Aligned_cols=183 Identities=46% Similarity=0.798 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCCh
Q psy18185 7 DKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPL 86 (190)
Q Consensus 7 ~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~ 86 (190)
.++|++||.+|.+|..+||.++.+|||||||+|+|+-+||++|++++|+...|+++++||++..++.|| |+.+|+++|.
T Consensus 266 ~EvRdqin~KV~eWreEGKAeivpGVLFIDEvHMLDIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGT-n~~SphGiP~ 344 (454)
T KOG2680|consen 266 SEVRDQINTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPIIIMATNRGITRIRGT-NYRSPHGIPI 344 (454)
T ss_pred HHHHHHHHHHHHHHHhcCCeeeccceEEEeeehhhhhHHHHHHHHHhhhccCcEEEEEcCCceEEeecC-CCCCCCCCcH
Confidence 478999999999999999999999999999999999999999999999988899999999999999999 6789999999
Q ss_pred hHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 87 DLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 87 ~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
+|++|++++...||+.+|++.+|+.||.+|++.++++|++.+...+...++|||++++..+...+.++....+..++|+.
T Consensus 345 D~lDR~lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r 424 (454)
T KOG2680|consen 345 DLLDRMLIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIER 424 (454)
T ss_pred HHhhhhheeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHH
Confidence 99999999999999999999999999999999999999999999977789999999999999988888888899999999
Q ss_pred HHHhccChHHHHHHhHHhhhhhcC
Q psy18185 167 VSTLFLDAKSSARILTENKDKFMR 190 (190)
Q Consensus 167 ~~~~f~~~~~~~~~~~~~~~~~~~ 190 (190)
++.+|+|.+|+++|+++++..|||
T Consensus 425 ~y~LFlD~~Rs~~yl~E~~~~y~~ 448 (454)
T KOG2680|consen 425 VYRLFLDEKRSMKYLTEYQSGYLF 448 (454)
T ss_pred HHHHHhhhhhhhHHHHHhhhcccc
Confidence 999999999999999999999986
No 3
>KOG1942|consensus
Probab=100.00 E-value=8.5e-35 Score=245.91 Aligned_cols=184 Identities=70% Similarity=1.098 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCC
Q psy18185 6 SDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIP 85 (190)
Q Consensus 6 ~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~ 85 (190)
||.+|.+||++|++|+++|..++.+|||||||+|+|+-+||.+|++.+|.+-.|++|+|||++.+-++||++..+|+++|
T Consensus 273 TdkLR~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLDiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip 352 (456)
T KOG1942|consen 273 TDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIP 352 (456)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhcCcceEeeehhhhhhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 86 LDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 86 ~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
+++++|..+++..+|+++++++||+.|++.||+.++++++..++..+.+.++||++++|.-+..+|+..|+..|.+++|.
T Consensus 353 ~dllDRl~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dve 432 (456)
T KOG1942|consen 353 PDLLDRLLIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVE 432 (456)
T ss_pred HHHhhheeEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHH
Confidence 99999999999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred HHHHhccChHHHHHHhHHhhhhhc
Q psy18185 166 EVSTLFLDAKSSARILTENKDKFM 189 (190)
Q Consensus 166 ~~~~~f~~~~~~~~~~~~~~~~~~ 189 (190)
++..+|+|..++.|.+...+.+||
T Consensus 433 e~~~Lf~Dak~s~k~l~~~~~k~~ 456 (456)
T KOG1942|consen 433 EVTELFLDAKRSAKILEESQNKYL 456 (456)
T ss_pred HHHHHHHhchhhHHHHHhhhccCC
Confidence 999999999999999999999886
No 4
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.98 E-value=1.9e-32 Score=237.96 Aligned_cols=142 Identities=63% Similarity=1.052 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCC
Q psy18185 6 SDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIP 85 (190)
Q Consensus 6 ~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~ 85 (190)
++++|++||++|++|.++|+.++.+|||||||+|.|+.+||++|+|++|.+..|++|+|||++.++++|| ++.+|+++|
T Consensus 255 ~~elR~eInk~V~~wieegkAelvpGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg~~~irGt-~~~sphGiP 333 (398)
T PF06068_consen 255 TDELREEINKKVNKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRGITKIRGT-DIISPHGIP 333 (398)
T ss_dssp -HHHHHHHHHHHHHHHHCTSEEEEE-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTT-S-EEETT--
T ss_pred hHHHHHHHhHHHHHHHhcCceEEecceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCceeeeccCc-cCcCCCCCC
Confidence 6899999999999999999999999999999999999999999999999998999999999999999999 577999999
Q ss_pred hhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 86 LDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 86 ~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
.+|++||.+++..||+.+|+++||+.||+.|+++++++|+++|++.+.+.++|||+++|..+.
T Consensus 334 ~DlLDRllII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 334 LDLLDRLLIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHTTEEEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred cchHhhcEEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999988899999999998775
No 5
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.92 E-value=1e-24 Score=197.63 Aligned_cols=145 Identities=27% Similarity=0.365 Sum_probs=131.0
Q ss_pred ccchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCC
Q psy18185 3 AYKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISP 81 (190)
Q Consensus 3 ~~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~ 81 (190)
.-.-|++| +|++.+++.+.++++ +|++|||+|+|++.+||+|+|++|+||. +.||+|| || |
T Consensus 98 n~gVddiR-~i~e~v~y~P~~~ry----KVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlAT---------Te----~ 159 (515)
T COG2812 98 NTGVDDIR-EIIEKVNYAPSEGRY----KVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILAT---------TE----P 159 (515)
T ss_pred ccChHHHH-HHHHHhccCCccccc----eEEEEecHHhhhHHHHHHHhcccccCccCeEEEEec---------CC----c
Confidence 33558898 688888887777664 9999999999999999999999999987 8999999 75 9
Q ss_pred CCCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccH
Q psy18185 82 HGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISK 161 (190)
Q Consensus 82 ~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~ 161 (190)
+++|+|++|||+.|.|++++.+++...|..++.+||+.++++++..|++. ++|++|.++.+|+++...+ .+.||.
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~-a~Gs~RDalslLDq~i~~~----~~~It~ 234 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA-AEGSLRDALSLLDQAIAFG----EGEITL 234 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH-cCCChhhHHHHHHHHHHcc----CCcccH
Confidence 99999999999999999999999999999999999999999999999999 6999999999999997543 357999
Q ss_pred HHHHHHHHh
Q psy18185 162 QDILEVSTL 170 (190)
Q Consensus 162 ~~V~~~~~~ 170 (190)
+.|..+++.
T Consensus 235 ~~v~~~lG~ 243 (515)
T COG2812 235 ESVRDMLGL 243 (515)
T ss_pred HHHHHHhCC
Confidence 999988864
No 6
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=2.2e-22 Score=181.28 Aligned_cols=142 Identities=23% Similarity=0.260 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCC
Q psy18185 6 SDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGI 84 (190)
Q Consensus 6 ~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l 84 (190)
-+++|+ +.+.+......+ .++|+||||||+|+.+++++|++.+|+++. ++||++| ++ ++.+
T Consensus 103 Vd~IRe-L~e~l~~~p~~g----~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT---------te----~~kI 164 (484)
T PRK14956 103 IENIRE-LRDNVKFAPMGG----KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT---------TE----FHKI 164 (484)
T ss_pred HHHHHH-HHHHHHhhhhcC----CCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec---------CC----hhhc
Confidence 466763 444444333333 358999999999999999999999999876 6788888 43 7899
Q ss_pred ChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 85 PLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 85 ~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
+++++|||+.|.|++++.+++.+.|+++++++|+.++++++.+|++. ++||+|.|+++|+.+...+ .+.||.+.|
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~-S~Gd~RdAL~lLeq~i~~~----~~~it~~~V 239 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK-GDGSVRDMLSFMEQAIVFT----DSKLTGVKI 239 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCChHHHHHHHHHHHHHhC----CCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999 6999999999999876432 236999999
Q ss_pred HHHHHh
Q psy18185 165 LEVSTL 170 (190)
Q Consensus 165 ~~~~~~ 170 (190)
.++++.
T Consensus 240 ~~~lg~ 245 (484)
T PRK14956 240 RKMIGY 245 (484)
T ss_pred HHHhCC
Confidence 988753
No 7
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=1.7e-21 Score=181.21 Aligned_cols=143 Identities=24% Similarity=0.341 Sum_probs=120.7
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+-+++|+ +.+.+......| .++|+||||+|+|+.+++|+|+|++|+|+. ..||++| |+ +.
T Consensus 99 ~~VddiR~-li~~~~~~p~~g----~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~T---------t~----~~ 160 (647)
T PRK07994 99 TKVEDTRE-LLDNVQYAPARG----RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT---------TD----PQ 160 (647)
T ss_pred CCHHHHHH-HHHHHHhhhhcC----CCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEec---------CC----cc
Confidence 35567774 444444444344 459999999999999999999999999876 6788888 43 67
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.++++++|||+.|.|++++.+++.+.|..+++.+|+.++++++..|+.. ++||+|.|+++|+.+... |.+.||.+
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~-s~Gs~R~Al~lldqaia~----~~~~it~~ 235 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA-ADGSMRDALSLTDQAIAS----GNGQVTTD 235 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----cCCCcCHH
Confidence 8999999999999999999999999999999999999999999999999 699999999999987643 34569998
Q ss_pred HHHHHHH
Q psy18185 163 DILEVST 169 (190)
Q Consensus 163 ~V~~~~~ 169 (190)
+|+.+++
T Consensus 236 ~v~~~lg 242 (647)
T PRK07994 236 DVSAMLG 242 (647)
T ss_pred HHHHHHc
Confidence 8888775
No 8
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=1e-21 Score=183.82 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=111.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|+||||+|+|+..++|+|+|++|+++. ..||++|| + ++.|+++|+|||+.|.|++++.+++.+
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt---------d----~~KIp~TIrSRCq~f~Fk~Ls~eeIv~ 185 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT---------D----PQKIPVTVLSRCLQFNLKQMPAGHIVS 185 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC---------C----hhhccchhhhheEEEecCCcCHHHHHH
Confidence 469999999999999999999999999765 78999994 2 788999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+|.+++++||+.++++++..|++. ++||+|.|+++|+++..++ ...||.+.|+.+++.
T Consensus 186 ~L~~Il~~EgI~id~eAL~lIA~~-A~GsmRdALsLLdQAia~~----~~~It~~~V~~~LG~ 243 (830)
T PRK07003 186 HLERILGEERIAFEPQALRLLARA-AQGSMRDALSLTDQAIAYS----ANEVTETAVSGMLGA 243 (830)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhc----cCCcCHHHHHHHhCC
Confidence 999999999999999999999999 6999999999999877543 346999988887753
No 9
>KOG0989|consensus
Probab=99.87 E-value=1.6e-21 Score=165.62 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=110.1
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
.+++|+||||+|.|+.++|++|+|++|+.+. +.||++|| ....+|.++.|||+.|+|+++.++++.
T Consensus 128 ~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcn-------------ylsrii~pi~SRC~KfrFk~L~d~~iv 194 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICN-------------YLSRIIRPLVSRCQKFRFKKLKDEDIV 194 (346)
T ss_pred CcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcC-------------ChhhCChHHHhhHHHhcCCCcchHHHH
Confidence 4569999999999999999999999999666 89999996 277899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+.|+.+|.+||+.+++++++.|++. |.||+|.|+.+|+.++. +.++||.+.+.+-++
T Consensus 195 ~rL~~Ia~~E~v~~d~~al~~I~~~-S~GdLR~Ait~Lqsls~-----~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 195 DRLEKIASKEGVDIDDDALKLIAKI-SDGDLRRAITTLQSLSL-----LGKRITTSLVNEELA 251 (346)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHhhc-----cCcccchHHHHHHHh
Confidence 9999999999999999999999999 79999999999999986 334688666555443
No 10
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=2.2e-21 Score=179.53 Aligned_cols=145 Identities=22% Similarity=0.264 Sum_probs=120.3
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++|+ +.+.+......+ .++|+||||+|+|+.+++|+|+|++|+++. +.||++|| + ++.
T Consensus 105 gVDdIRe-Lie~~~~~P~~g----r~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt---------e----p~k 166 (700)
T PRK12323 105 GVDEMAQ-LLDKAVYAPTAG----RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT---------D----PQK 166 (700)
T ss_pred CHHHHHH-HHHHHHhchhcC----CceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC---------C----hHh
Confidence 4466774 333333333333 459999999999999999999999999866 78999994 2 789
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++|+|||+.|.|++++.+++.++|+.++.++|+.++++++..|++. ++|++|.|+++++.+..+ +...||.+.
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~-A~Gs~RdALsLLdQaia~----~~~~It~~~ 241 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA-AQGSMRDALSLTDQAIAY----SAGNVSEEA 241 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----ccCCcCHHH
Confidence 999999999999999999999999999999999999999999999999 699999999999987643 334688888
Q ss_pred HHHHHHhcc
Q psy18185 164 ILEVSTLFL 172 (190)
Q Consensus 164 V~~~~~~f~ 172 (190)
|.++++..-
T Consensus 242 V~~~LG~~d 250 (700)
T PRK12323 242 VRGMLGAID 250 (700)
T ss_pred HHHHhCCCC
Confidence 887776443
No 11
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=2e-21 Score=177.24 Aligned_cols=145 Identities=24% Similarity=0.295 Sum_probs=122.6
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+-+++|+ +.+.+......+ .++|+||||+|+|+.+++|+|++++|+++. +.||++| ++ ++
T Consensus 99 ~~v~~iR~-l~~~~~~~p~~~----~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat---------td----~~ 160 (509)
T PRK14958 99 TKVEDTRE-LLDNIPYAPTKG----RFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT---------TD----HH 160 (509)
T ss_pred CCHHHHHH-HHHHHhhccccC----CcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE---------CC----hH
Confidence 45567774 444444433333 459999999999999999999999999876 6789988 43 78
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.++++++|||+.++|++++.+++.++|..+++++|+.+++++++.+++. ++||+|.|+++|+.+..+ |.+.||.+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~-s~GslR~al~lLdq~ia~----~~~~It~~ 235 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA-ANGSVRDALSLLDQSIAY----GNGKVLIA 235 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhc----CCCCcCHH
Confidence 8999999999999999999999999999999999999999999999999 699999999999987643 45679999
Q ss_pred HHHHHHHhc
Q psy18185 163 DILEVSTLF 171 (190)
Q Consensus 163 ~V~~~~~~f 171 (190)
+|..+++..
T Consensus 236 ~V~~~lg~~ 244 (509)
T PRK14958 236 DVKTMLGTI 244 (509)
T ss_pred HHHHHHCCC
Confidence 999988643
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.86 E-value=5e-21 Score=167.53 Aligned_cols=124 Identities=27% Similarity=0.365 Sum_probs=108.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
.-||||||||++++.+|.+|+..+|++ ..++|+|| ||| |++.+.++|+|||++|.|+|++.+++..+|
T Consensus 105 ~tiLflDEIHRfnK~QQD~lLp~vE~G-~iilIGAT---------TEN--PsF~ln~ALlSR~~vf~lk~L~~~di~~~l 172 (436)
T COG2256 105 RTILFLDEIHRFNKAQQDALLPHVENG-TIILIGAT---------TEN--PSFELNPALLSRARVFELKPLSSEDIKKLL 172 (436)
T ss_pred ceEEEEehhhhcChhhhhhhhhhhcCC-eEEEEecc---------CCC--CCeeecHHHhhhhheeeeecCCHHHHHHHH
Confidence 479999999999999999999999997 47888899 888 589999999999999999999999999999
Q ss_pred HHHHH--hcCCC-----CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 110 KLRAN--TEGHV-----LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 110 ~~~~~--~~~~~-----i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
.+.+. ..|+. +++++..+++.. ++||.|.|+|.|+.+...++... .++++.+++++
T Consensus 173 ~ra~~~~~rgl~~~~~~i~~~a~~~l~~~-s~GD~R~aLN~LE~~~~~~~~~~--~~~~~~l~~~l 235 (436)
T COG2256 173 KRALLDEERGLGGQIIVLDEEALDYLVRL-SNGDARRALNLLELAALSAEPDE--VLILELLEEIL 235 (436)
T ss_pred HHHHhhhhcCCCcccccCCHHHHHHHHHh-cCchHHHHHHHHHHHHHhcCCCc--ccCHHHHHHHH
Confidence 98554 34554 889999999999 69999999999999998876432 45588888777
No 13
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.6e-20 Score=178.48 Aligned_cols=143 Identities=25% Similarity=0.332 Sum_probs=119.6
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+-+++|+ |.+.+......+ .++|+||||+|+|+.++|++|+|++|+|+. ..||++| |+ +.
T Consensus 99 ~kVDdIRe-Lie~v~~~P~~g----k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT---------Te----~~ 160 (944)
T PRK14949 99 TKVDDTRE-LLDNVQYRPSRG----RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT---------TD----PQ 160 (944)
T ss_pred cCHHHHHH-HHHHHHhhhhcC----CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC---------CC----ch
Confidence 45577874 444444433333 359999999999999999999999999876 6788888 43 67
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.++++|+|||+.|+|++++.+++...|..++..+|+.++++++..|++. ++|++|.|+++|+.+... +...++.+
T Consensus 161 kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~-S~Gd~R~ALnLLdQala~----~~~~It~~ 235 (944)
T PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA-ANGSMRDALSLTDQAIAF----GGGQVMLT 235 (944)
T ss_pred hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----cCCcccHH
Confidence 7999999999999999999999999999999999999999999999999 699999999999987633 34568888
Q ss_pred HHHHHHH
Q psy18185 163 DILEVST 169 (190)
Q Consensus 163 ~V~~~~~ 169 (190)
.|.++++
T Consensus 236 ~V~~llG 242 (944)
T PRK14949 236 QVQTMLG 242 (944)
T ss_pred HHHHHhC
Confidence 8777664
No 14
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.1e-20 Score=175.20 Aligned_cols=144 Identities=22% Similarity=0.277 Sum_probs=120.2
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+-+++|+-+ +.+.. ......++|+||||+|+|+.+++|+|++++|+++. +.||++| ++ +.
T Consensus 104 ~~Vd~iReli-~~~~~----~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T---------td----~~ 165 (618)
T PRK14951 104 RGVDEVQQLL-EQAVY----KPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT---------TD----PQ 165 (618)
T ss_pred cCHHHHHHHH-HHHHh----CcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE---------CC----ch
Confidence 3445666433 32332 22233469999999999999999999999999876 6888888 43 77
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.++++++|||+.|.|++++.+++.++|..++.++|+.++++++.+|++. ++||+|.++++|+.+..+ |.+.||.+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~-s~GslR~al~lLdq~ia~----~~~~It~~ 240 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA-ARGSMRDALSLTDQAIAF----GSGQLQEA 240 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----cCCCcCHH
Confidence 8999999999999999999999999999999999999999999999999 699999999999887654 34579999
Q ss_pred HHHHHHHh
Q psy18185 163 DILEVSTL 170 (190)
Q Consensus 163 ~V~~~~~~ 170 (190)
+|+.+++.
T Consensus 241 ~V~~~Lg~ 248 (618)
T PRK14951 241 AVRQMLGS 248 (618)
T ss_pred HHHHHHcC
Confidence 99988754
No 15
>PRK04132 replication factor C small subunit; Provisional
Probab=99.85 E-value=1.7e-20 Score=178.51 Aligned_cols=122 Identities=23% Similarity=0.342 Sum_probs=108.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|+||||+|.|+.++|++|++++|+|+. ..||++|| +++.++++++|||+.++|+|++++++..
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N-------------~~~kIi~tIrSRC~~i~F~~ls~~~i~~ 696 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCN-------------YSSKIIEPIQSRCAIFRFRPLRDEDIAK 696 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeC-------------ChhhCchHHhhhceEEeCCCCCHHHHHH
Confidence 358999999999999999999999999765 78999995 3789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.|.++|+++|+.++++++..|+.. ++||+|.|+++|+.++.. ...||.+.|..+.+
T Consensus 697 ~L~~I~~~Egi~i~~e~L~~Ia~~-s~GDlR~AIn~Lq~~~~~-----~~~It~~~V~~~~~ 752 (846)
T PRK04132 697 RLRYIAENEGLELTEEGLQAILYI-AEGDMRRAINILQAAAAL-----DDKITDENVFLVAS 752 (846)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh-----cCCCCHHHHHHHhC
Confidence 999999999999999999999999 799999999999987642 23588777776553
No 16
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=3.3e-20 Score=172.05 Aligned_cols=142 Identities=27% Similarity=0.387 Sum_probs=119.7
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++|+ +.+.+......+ .++|+||||+|+|+.+++++|++++|+++. ..||++|+ + ++.
T Consensus 99 ~VddIRe-li~~~~y~P~~g----k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt---------d----~~k 160 (702)
T PRK14960 99 KVEDTRE-LLDNVPYAPTQG----RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT---------D----PQK 160 (702)
T ss_pred CHHHHHH-HHHHHhhhhhcC----CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC---------C----hHh
Confidence 4456664 333333333333 358999999999999999999999999866 67888883 2 678
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.+.|++++.+++.++|..+++++|+.++++++++|++. ++||+|.|+++|+.+..+ |.+.||.++
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~-S~GdLRdALnLLDQaIay----g~g~IT~ed 235 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES-AQGSLRDALSLTDQAIAY----GQGAVHHQD 235 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----cCCCcCHHH
Confidence 899999999999999999999999999999999999999999999999 699999999999887643 456799999
Q ss_pred HHHHHH
Q psy18185 164 ILEVST 169 (190)
Q Consensus 164 V~~~~~ 169 (190)
|..+++
T Consensus 236 V~~lLG 241 (702)
T PRK14960 236 VKEMLG 241 (702)
T ss_pred HHHHhc
Confidence 998876
No 17
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=2.7e-20 Score=171.89 Aligned_cols=144 Identities=22% Similarity=0.236 Sum_probs=121.3
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++|+ |.+.+......+ .++|+||||+|+|+.+++|+|++++|+++. ++||++| ++ ++.
T Consensus 99 gvd~iRe-l~~~~~~~P~~~----~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t---------te----~~k 160 (584)
T PRK14952 99 GVDDTRE-LRDRAFYAPAQS----RYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT---------TE----PEK 160 (584)
T ss_pred CHHHHHH-HHHHHHhhhhcC----CceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe---------CC----hHh
Confidence 4567773 444444433333 459999999999999999999999999876 7888888 43 678
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.|.|.+++.+++.++|.++++++|+.++++++.+|+.. ++||+|.|+++|+.+..++ +...||.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~-s~GdlR~aln~Ldql~~~~---~~~~It~~~ 236 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA-GGGSPRDTLSVLDQLLAGA---ADTHVTYQR 236 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhcc---CCCCcCHHH
Confidence 999999999999999999999999999999999999999999999999 6999999999999987543 345799999
Q ss_pred HHHHHHh
Q psy18185 164 ILEVSTL 170 (190)
Q Consensus 164 V~~~~~~ 170 (190)
|..+++.
T Consensus 237 v~~llg~ 243 (584)
T PRK14952 237 ALGLLGA 243 (584)
T ss_pred HHHHHCC
Confidence 9887643
No 18
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=7.1e-20 Score=167.95 Aligned_cols=143 Identities=26% Similarity=0.348 Sum_probs=119.3
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+.+++|+ |.+.+......+ .++|+||||+|.|+.+++++|++++|+++. +.||++| ++ ++.
T Consensus 100 gvd~ir~-ii~~~~~~p~~g----~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T---------td----~~k 161 (546)
T PRK14957 100 GVEETKE-ILDNIQYMPSQG----RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT---------TD----YHK 161 (546)
T ss_pred CHHHHHH-HHHHHHhhhhcC----CcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE---------CC----hhh
Confidence 3455653 333333333333 458999999999999999999999999876 6788888 43 788
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.++|++++.+++.++|..+++++|+.++++++.+|+.. ++||+|.|+++|+.+..++ .+.||.++
T Consensus 162 il~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~-s~GdlR~alnlLek~i~~~----~~~It~~~ 236 (546)
T PRK14957 162 IPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYH-AKGSLRDALSLLDQAISFC----GGELKQAQ 236 (546)
T ss_pred hhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhc----cCCCCHHH
Confidence 999999999999999999999999999999999999999999999999 6999999999999887543 25799999
Q ss_pred HHHHHHh
Q psy18185 164 ILEVSTL 170 (190)
Q Consensus 164 V~~~~~~ 170 (190)
|+++++.
T Consensus 237 V~~~l~~ 243 (546)
T PRK14957 237 IKQMLGI 243 (546)
T ss_pred HHHHHcc
Confidence 9987654
No 19
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2.6e-20 Score=168.82 Aligned_cols=143 Identities=24% Similarity=0.272 Sum_probs=120.4
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++|+ |.+.+... .....++|+||||+|.|+.+++|+|++++|+|+. ..||++| ++ +..
T Consensus 97 ~vddIR~-Iie~~~~~----P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat---------te----~~K 158 (491)
T PRK14964 97 SVDDIKV-ILENSCYL----PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT---------TE----VKK 158 (491)
T ss_pred CHHHHHH-HHHHHHhc----cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe---------CC----hHH
Confidence 4566774 33333332 2233569999999999999999999999999876 6788888 43 677
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.+.|++++.+++.++|..+++++|+.++++++++|++. ++||+|.|+++|+.+..++. +.||.++
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~-s~GslR~alslLdqli~y~~----~~It~e~ 233 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN-SSGSMRNALFLLEQAAIYSN----NKISEKS 233 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcC----CCCCHHH
Confidence 999999999999999999999999999999999999999999999999 69999999999999876542 4799999
Q ss_pred HHHHHHh
Q psy18185 164 ILEVSTL 170 (190)
Q Consensus 164 V~~~~~~ 170 (190)
|+.+++.
T Consensus 234 V~~llg~ 240 (491)
T PRK14964 234 VRDLLGC 240 (491)
T ss_pred HHHHHcc
Confidence 9987653
No 20
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=4.2e-20 Score=170.93 Aligned_cols=143 Identities=24% Similarity=0.354 Sum_probs=119.9
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+.+++|+ +.+.+...... ..++|+||||+|.|+.+++|+|++++|+|+. ++||++| ++ ++
T Consensus 99 ~~v~~ir~-l~~~~~~~p~~----~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t---------~~----~~ 160 (576)
T PRK14965 99 TGVDDIRE-LRENVKYLPSR----SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFAT---------TE----PH 160 (576)
T ss_pred cCHHHHHH-HHHHHHhcccc----CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEe---------CC----hh
Confidence 34567773 44444433323 3469999999999999999999999999876 6888888 32 78
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.++++++|||+.+.|++++.+++..+|..+++++|+.++++++.+|+.. ++||+|.|+++|+.+..+. .+.||.+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~-a~G~lr~al~~Ldqliay~----g~~It~e 235 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK-GDGSMRDSLSTLDQVLAFC----GDAVGDD 235 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhc----cCCCCHH
Confidence 9999999999999999999999999999999999999999999999999 6999999999999876543 2369999
Q ss_pred HHHHHHH
Q psy18185 163 DILEVST 169 (190)
Q Consensus 163 ~V~~~~~ 169 (190)
+|..+++
T Consensus 236 dV~~llG 242 (576)
T PRK14965 236 DVAELLG 242 (576)
T ss_pred HHHHHhC
Confidence 9887743
No 21
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=7.7e-20 Score=167.17 Aligned_cols=123 Identities=29% Similarity=0.392 Sum_probs=110.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|++|||+|.|+.+++++|++++|+++. ..||++|+ + +..++++++|||+.++|.|++.+++.+
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt---------d----~~kL~~tI~SRc~~~~F~~Ls~~ei~~ 183 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT---------D----PLKLPATILSRTQHFRFKQIPQNSIIS 183 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC---------C----hhhCchHHHhhceeEEcCCCCHHHHHH
Confidence 468999999999999999999999999866 67888883 2 688999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+|..+++++|+.++++++.+|+.. ++||+|.|+++|+.+..++ ...||.++|..+++
T Consensus 184 ~L~~Il~~EGi~i~~~Al~~Ia~~-s~GdlR~alnlLdqai~~~----~~~It~~~V~~~lg 240 (535)
T PRK08451 184 HLKTILEKEGVSYEPEALEILARS-GNGSLRDTLTLLDQAIIYC----KNAITESKVADMLG 240 (535)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHHhc----CCCCCHHHHHHHhC
Confidence 999999999999999999999999 6999999999999887654 34688888887654
No 22
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=9.4e-20 Score=168.06 Aligned_cols=142 Identities=31% Similarity=0.401 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
.-+++|+ +.+.+......+ .++|+||||+|.|+.+++++|++++|+|+. ++||++| + .|+.
T Consensus 100 ~vd~ir~-i~~~v~~~p~~~----~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlat---------t----~~~k 161 (559)
T PRK05563 100 GVDEIRD-IRDKVKYAPSEA----KYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILAT---------T----EPHK 161 (559)
T ss_pred CHHHHHH-HHHHHhhCcccC----CeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEe---------C----Chhh
Confidence 3456763 444444333333 469999999999999999999999999876 6788888 4 2788
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.+.|++++.+++.++|..+++++|+.+++++++.|+.. ++||+|.|+++|+.+..+ +...||.++
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~-s~G~~R~al~~Ldq~~~~----~~~~It~~~ 236 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA-AEGGMRDALSILDQAISF----GDGKVTYED 236 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----ccCCCCHHH
Confidence 999999999999999999999999999999999999999999999999 699999999999988654 344799998
Q ss_pred HHHHHH
Q psy18185 164 ILEVST 169 (190)
Q Consensus 164 V~~~~~ 169 (190)
|..+++
T Consensus 237 V~~vlg 242 (559)
T PRK05563 237 ALEVTG 242 (559)
T ss_pred HHHHhC
Confidence 887764
No 23
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=1.2e-19 Score=166.36 Aligned_cols=124 Identities=26% Similarity=0.323 Sum_probs=111.8
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|+||||+|.|+.+++|+|++++|+++. ..||++| ++ +..++++++|||+.++|++++.+++.
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t---------~d----~~kil~tI~SRc~~~~f~~l~~~~i~ 184 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT---------TD----PQKIPVTVLSRCLQFNLKQMPPPLIV 184 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe---------CC----hhhCchhHHHHHHHHhcCCCCHHHHH
Confidence 3469999999999999999999999999866 6788888 42 67888899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++|..+++++|+.++++++++|++. ++||+|.|+++|+.+..+ |.+.||.++|+.+++
T Consensus 185 ~~L~~il~~egi~~~~~al~~la~~-s~Gslr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 185 SHLQHILEQENIPFDATALQLLARA-AAGSMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 9999999999999999999999999 699999999999988754 456799999988775
No 24
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=1.5e-19 Score=158.77 Aligned_cols=123 Identities=26% Similarity=0.313 Sum_probs=110.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|+||||+|.|+.+++++|++.+|+++. +.+|++|+ + +..++++++|||+.++|+|++.+++.+
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~---------~----~~~l~~tI~SRc~~~~~~~l~~~el~~ 185 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT---------D----VEKIPKTILSRCLQFKLKIISEEKIFN 185 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC---------C----hHhhhHHHHhhceEEeCCCCCHHHHHH
Confidence 458999999999999999999999999876 56788773 2 567899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+|..+++.+|+.++++++++++.. ++||+|.|+++|+.+..+ |.+.||.++|.++++
T Consensus 186 ~L~~~~~~~g~~i~~~al~~ia~~-s~G~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 186 FLKYILIKESIDTDEYALKLIAYH-AHGSMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 999999999999999999999999 699999999999988653 456799999998775
No 25
>PLN03025 replication factor C subunit; Provisional
Probab=99.83 E-value=3e-19 Score=154.08 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=106.4
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|+||||+|.|+.++|++|++++|.++. ..+|++|| .+..+.++++|||..++|++++++++.+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n-------------~~~~i~~~L~SRc~~i~f~~l~~~~l~~ 165 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN-------------TSSKIIEPIQSRCAIVRFSRLSDQEILG 165 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeC-------------CccccchhHHHhhhcccCCCCCHHHHHH
Confidence 358999999999999999999999998655 67888885 2567889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
+|..+++++|+.++++++++++.. ++||+|.|++.|+.+.. |...||.++|.++.
T Consensus 166 ~L~~i~~~egi~i~~~~l~~i~~~-~~gDlR~aln~Lq~~~~-----~~~~i~~~~v~~~~ 220 (319)
T PLN03025 166 RLMKVVEAEKVPYVPEGLEAIIFT-ADGDMRQALNNLQATHS-----GFGFVNQENVFKVC 220 (319)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHc
Confidence 999999999999999999999999 69999999999995541 33468888887654
No 26
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=1.7e-19 Score=164.27 Aligned_cols=130 Identities=27% Similarity=0.291 Sum_probs=114.0
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|+||||+|.|+..++++|++++|+++. .+||++| ++ +..++++++|||+.+.|++++.+++.
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT---------te----~~kI~~tI~SRc~~~ef~~ls~~el~ 193 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT---------TE----VQKIPATIISRCQRYDLRRLSFEEIF 193 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe---------CC----hHHhhHHHHhcceEEEccCCCHHHHH
Confidence 3469999999999999999999999999866 5777887 32 66899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
++|..+++++|+.++++++++|+.. ++||+|.|+++|+.+..++... ...||.++|+.+++...
T Consensus 194 ~~L~~i~~~egi~ie~eAL~~Ia~~-s~GslR~al~~Ldkai~~~~~~-~~~It~~~V~~llg~~~ 257 (507)
T PRK06645 194 KLLEYITKQENLKTDIEALRIIAYK-SEGSARDAVSILDQAASMSAKS-DNIISPQVINQMLGLVD 257 (507)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCCCC
Confidence 9999999999999999999999999 6999999999999987665321 23699999999886433
No 27
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=2.8e-19 Score=166.71 Aligned_cols=144 Identities=24% Similarity=0.333 Sum_probs=119.9
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+.+++|+.+ +.+......+ .++|+||||+|.|+..+++.|++.+|+++. +.||++|+ + +..
T Consensus 100 gVd~IRell-e~a~~~P~~g----k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt---------d----~~k 161 (709)
T PRK08691 100 GIDNIREVL-ENAQYAPTAG----KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT---------D----PHK 161 (709)
T ss_pred CHHHHHHHH-HHHHhhhhhC----CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC---------C----ccc
Confidence 345666433 3333333333 358999999999999999999999999765 67888884 2 678
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.|.|++++.+++.++|..+++++|+.++++++..|++. ++||+|.|+++|+.+..+ |.+.||.++
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~-A~GslRdAlnLLDqaia~----g~g~It~e~ 236 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA-AAGSMRDALSLLDQAIAL----GSGKVAEND 236 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-hCCCHHHHHHHHHHHHHh----cCCCcCHHH
Confidence 999999999999999999999999999999999999999999999999 699999999999987754 445799999
Q ss_pred HHHHHHhc
Q psy18185 164 ILEVSTLF 171 (190)
Q Consensus 164 V~~~~~~f 171 (190)
|..+++..
T Consensus 237 V~~lLG~~ 244 (709)
T PRK08691 237 VRQMIGAV 244 (709)
T ss_pred HHHHHccc
Confidence 99887643
No 28
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=2.4e-19 Score=168.12 Aligned_cols=143 Identities=24% Similarity=0.356 Sum_probs=119.2
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+.+++|+ +.+.+...+.. ..++|+||||+|.|+.+++++|++++|+|+. ++||++| + .+..
T Consensus 99 ~vd~IRe-Lie~~~~~P~~----g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT---------t----e~~K 160 (725)
T PRK07133 99 GVDEIRE-LIENVKNLPTQ----SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT---------T----EVHK 160 (725)
T ss_pred CHHHHHH-HHHHHHhchhc----CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc---------C----Chhh
Confidence 3456663 44444433333 3469999999999999999999999999876 6778888 3 2789
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.++|.|++.+++.++|..+++++|+.+++++++.++.. ++||+|.|+++|+.+..++ .+.||.++
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l-S~GslR~AlslLekl~~y~----~~~It~e~ 235 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL-SSGSLRDALSIAEQVSIFG----NNKITLKN 235 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhc----cCCCCHHH
Confidence 999999999999999999999999999999999999999999999999 6999999999999887553 33599999
Q ss_pred HHHHHHh
Q psy18185 164 ILEVSTL 170 (190)
Q Consensus 164 V~~~~~~ 170 (190)
|.++++.
T Consensus 236 V~ellg~ 242 (725)
T PRK07133 236 VEELFGL 242 (725)
T ss_pred HHHHHcC
Confidence 9876543
No 29
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=5.3e-19 Score=168.73 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=118.6
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++|+ +.+.+...... ..++|+||||+|+|+.+++|+|++++|+++. .+|||+|+ + +..
T Consensus 101 ~Vd~iR~-l~~~~~~~p~~----~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt---------~----~~k 162 (824)
T PRK07764 101 GVDDARE-LRERAFFAPAE----SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT---------E----PDK 162 (824)
T ss_pred CHHHHHH-HHHHHHhchhc----CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC---------C----hhh
Confidence 4567774 44443332223 3469999999999999999999999999876 67888883 2 567
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
|+++|+|||++|+|.+++.+++.++|.++++++|+.++++++.+|+.. ++||+|.+++.|+.+...+ +...||.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~-sgGdlR~Al~eLEKLia~~---~~~~IT~e~ 238 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA-GGGSVRDSLSVLDQLLAGA---GPEGVTYER 238 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhhc---CCCCCCHHH
Confidence 899999999999999999999999999999999999999999999999 6999999999999877432 345699888
Q ss_pred HHHHHH
Q psy18185 164 ILEVST 169 (190)
Q Consensus 164 V~~~~~ 169 (190)
|..+++
T Consensus 239 V~allg 244 (824)
T PRK07764 239 AVALLG 244 (824)
T ss_pred HHHHhc
Confidence 887653
No 30
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=6.7e-19 Score=163.04 Aligned_cols=142 Identities=23% Similarity=0.309 Sum_probs=118.7
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++|+ +.+.+......+ .++|+||||+|.|+.++++.|++++|+++. ++||++|+ .+..
T Consensus 100 ~Id~iR~-L~~~~~~~p~~g----~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt-------------~~~k 161 (624)
T PRK14959 100 GIDDAKR-LKEAIGYAPMEG----RYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT-------------EPHK 161 (624)
T ss_pred CHHHHHH-HHHHHHhhhhcC----CceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC-------------Chhh
Confidence 4466773 555555544333 358999999999999999999999999765 67888883 2678
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.|+|++++.+++..+|...++.+|+.+++++++.|++. ++||+|.|+++|+.+.. .|...||.++
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~-s~GdlR~Al~lLeqll~----~g~~~It~d~ 236 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR-AAGSVRDSMSLLGQVLA----LGESRLTIDG 236 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHH----hcCCCcCHHH
Confidence 889999999999999999999999999999999999999999999999 69999999999997642 3455899998
Q ss_pred HHHHHH
Q psy18185 164 ILEVST 169 (190)
Q Consensus 164 V~~~~~ 169 (190)
|+.+++
T Consensus 237 V~~~lg 242 (624)
T PRK14959 237 ARGVLG 242 (624)
T ss_pred HHHHhC
Confidence 877653
No 31
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.1e-18 Score=158.52 Aligned_cols=142 Identities=25% Similarity=0.300 Sum_probs=119.5
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+.+++| +|.+.+...+..+ .++|+||||+|.|+.+++++|++++|+++. +++|++|+ .+..
T Consensus 100 gvd~ir-~I~~~~~~~P~~~----~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt-------------~~~k 161 (486)
T PRK14953 100 GIDDIR-ALRDAVSYTPIKG----KYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT-------------EYDK 161 (486)
T ss_pred CHHHHH-HHHHHHHhCcccC----CeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC-------------CHHH
Confidence 345666 3555554433333 459999999999999999999999999865 67888883 2677
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.+.|+|++.+++..+|..+++.+|+.++++++++|+.. ++||+|.|++.|+.+..+ +...||.++
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~-s~G~lr~al~~Ldkl~~~----~~~~It~~~ 236 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQA-SEGGMRDAASLLDQASTY----GEGKVTIKV 236 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----cCCCcCHHH
Confidence 889999999999999999999999999999999999999999999999 699999999999998754 345799999
Q ss_pred HHHHHH
Q psy18185 164 ILEVST 169 (190)
Q Consensus 164 V~~~~~ 169 (190)
|..+++
T Consensus 237 V~~~lg 242 (486)
T PRK14953 237 VEEFLG 242 (486)
T ss_pred HHHHhC
Confidence 998764
No 32
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=1.4e-18 Score=161.11 Aligned_cols=143 Identities=26% Similarity=0.330 Sum_probs=119.3
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++|+ |.+.+.... ....++|+||||+|.|+.+++++|++++|+++. +.||++|+ + +..
T Consensus 113 gvd~IRe-Iie~~~~~P----~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt---------e----~~k 174 (598)
T PRK09111 113 GVDDIRE-IIESVRYRP----VSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT---------E----IRK 174 (598)
T ss_pred CHHHHHH-HHHHHHhch----hcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC---------C----hhh
Confidence 3466763 333333322 233569999999999999999999999999866 67888883 2 567
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.|.|++++.+++.++|..+++++|+.++++++++|+.. ++||+|.+++.|+.+..+ |.+.||.++
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~-a~Gdlr~al~~Ldkli~~----g~g~It~e~ 249 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA-AEGSVRDGLSLLDQAIAH----GAGEVTAEA 249 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhh----cCCCcCHHH
Confidence 889999999999999999999999999999999999999999999999 699999999999987654 335799999
Q ss_pred HHHHHHh
Q psy18185 164 ILEVSTL 170 (190)
Q Consensus 164 V~~~~~~ 170 (190)
|+.+++.
T Consensus 250 V~~llg~ 256 (598)
T PRK09111 250 VRDMLGL 256 (598)
T ss_pred HHHHhCC
Confidence 9988753
No 33
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.2e-18 Score=157.89 Aligned_cols=145 Identities=25% Similarity=0.285 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCC
Q psy18185 6 SDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGI 84 (190)
Q Consensus 6 ~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l 84 (190)
-+++| +|.+.+...... ..++|+||||+|.|+.++++.|++.+|++++ +++|++| + .|..+
T Consensus 99 id~iR-~i~~~~~~~p~~----~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat---------t----n~~kl 160 (472)
T PRK14962 99 IDEIR-KIRDAVGYRPME----GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT---------T----NLEKV 160 (472)
T ss_pred HHHHH-HHHHHHhhChhc----CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe---------C----ChHhh
Confidence 35666 344444432222 2458999999999999999999999999766 5677777 3 26688
Q ss_pred ChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 85 PLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 85 ~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
+++++|||+++.|+|++.+++..+|+.+++.+|+.++++++++|++. ++||+|.|++.|+.+..++. ..||.++|
T Consensus 161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~-s~GdlR~aln~Le~l~~~~~----~~It~e~V 235 (472)
T PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR-ASGGLRDALTMLEQVWKFSE----GKITLETV 235 (472)
T ss_pred hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcC----CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999 69999999999998765432 25999999
Q ss_pred HHHHHhccC
Q psy18185 165 LEVSTLFLD 173 (190)
Q Consensus 165 ~~~~~~f~~ 173 (190)
.++++...+
T Consensus 236 ~~~l~~~~~ 244 (472)
T PRK14962 236 HEALGLIPI 244 (472)
T ss_pred HHHHcCCCH
Confidence 998865444
No 34
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=1.3e-18 Score=160.48 Aligned_cols=142 Identities=25% Similarity=0.347 Sum_probs=117.2
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++|+ +.+.+.... ....++|++|||+|.|+.+++++|++++|+|+. +++|++| + .++.
T Consensus 100 gVd~IRe-Ii~~~~~~P----~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T---------t----~~~K 161 (605)
T PRK05896 100 GVDEIRN-IIDNINYLP----TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT---------T----EFQK 161 (605)
T ss_pred CHHHHHH-HHHHHHhch----hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC---------C----ChHh
Confidence 4456663 333333322 223468999999999999999999999999876 6778888 3 2788
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
++++++|||+.++|++++.+++..+|..+++++|+.+++++++.++.. ++||+|.|+++|+.+..++ | ..||.++
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~l-S~GdlR~AlnlLekL~~y~---~-~~It~e~ 236 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADL-ADGSLRDGLSILDQLSTFK---N-SEIDIED 236 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhhc---C-CCCCHHH
Confidence 999999999999999999999999999999999999999999999999 6999999999999976553 2 2499998
Q ss_pred HHHHHH
Q psy18185 164 ILEVST 169 (190)
Q Consensus 164 V~~~~~ 169 (190)
|..+++
T Consensus 237 V~ellg 242 (605)
T PRK05896 237 INKTFG 242 (605)
T ss_pred HHHHhc
Confidence 888653
No 35
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=2e-18 Score=159.22 Aligned_cols=143 Identities=21% Similarity=0.237 Sum_probs=119.4
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+.+++|+ +.+.+...+..+ .++|+||||+|.|+.+++++|++++|+|+. .+||++| ++ +.
T Consensus 99 ~~vddIr~-l~e~~~~~p~~~----~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~t---------te----~~ 160 (563)
T PRK06647 99 TSVQDVRQ-IKEEIMFPPASS----RYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFAT---------TE----VH 160 (563)
T ss_pred CCHHHHHH-HHHHHHhchhcC----CCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEec---------CC----hH
Confidence 34567773 444444433333 459999999999999999999999999876 6777777 42 67
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.++++++|||+.++|.+++.+++.++|..+++.+|+.++++++.+|+.. ++||+|.|+++|+.+..++ .+.||.+
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~-s~GdlR~alslLdklis~~----~~~It~e 235 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK-STGSVRDAYTLFDQVVSFS----DSDITLE 235 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhhc----CCCCCHH
Confidence 8999999999999999999999999999999999999999999999999 6999999999999876543 3469999
Q ss_pred HHHHHHH
Q psy18185 163 DILEVST 169 (190)
Q Consensus 163 ~V~~~~~ 169 (190)
+|..+++
T Consensus 236 ~V~~llg 242 (563)
T PRK06647 236 QIRSKMG 242 (563)
T ss_pred HHHHHhC
Confidence 9988764
No 36
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.1e-17 Score=155.66 Aligned_cols=123 Identities=25% Similarity=0.330 Sum_probs=108.9
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|+||||+|.|+.+++++|++++|+++. ++||++| + .++.+.++|+|||++++|++++++++.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t---------t----~~~kIl~tI~SRc~iv~f~~ls~~ei~ 186 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT---------T----EKHKILPTILSRCQIFDFNRIQVADIV 186 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe---------C----CchhchHHHHhhhheeecCCCCHHHHH
Confidence 3569999999999999999999999999876 6788888 3 267899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
.+|..+++++|+.++++++++|+.. ++||+|.|++.|+.+..++ |. .||.++|.+.+
T Consensus 187 ~~L~~ia~~egi~i~~~al~~La~~-s~gdlr~al~~Lekl~~y~---~~-~It~~~V~~~l 243 (614)
T PRK14971 187 NHLQYVASKEGITAEPEALNVIAQK-ADGGMRDALSIFDQVVSFT---GG-NITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhc---cC-CccHHHHHHHh
Confidence 9999999999999999999999999 6999999999999877554 22 38887776655
No 37
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.8e-17 Score=154.19 Aligned_cols=127 Identities=24% Similarity=0.329 Sum_probs=111.7
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|+||||+|.|+.+++++|++++|+++. ++||++|+ .+..++++++|||++++|.+++.+++.
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~-------------~~~kLl~TI~SRc~~vef~~l~~~ei~ 192 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT-------------ELHKIPATIASRCQRFNFKRIPLDEIQ 192 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC-------------ChhhhhHHHHhhceEEecCCCCHHHHH
Confidence 3469999999999999999999999999876 67788873 267899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhh-cCCCcccHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT-NGRTAISKQDILEVS 168 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~-~g~~~It~~~V~~~~ 168 (190)
.+|..+++++|+.++++++++++.. ++||+|.|++.|+.+..++.. .....||.++|.+++
T Consensus 193 ~~L~~i~~~egi~I~~eal~~La~~-s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 193 SQLQMICRAEGIQIDADALQLIARK-AQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-hCCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 9999999999999999999999999 699999999999988877521 124579998887766
No 38
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2.9e-17 Score=148.17 Aligned_cols=140 Identities=24% Similarity=0.271 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCC
Q psy18185 6 SDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGI 84 (190)
Q Consensus 6 ~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l 84 (190)
-+++| ++.+.+...... ..++|+||||+|.|+.++++.|++++|+++. +.+|++|+ .+..+
T Consensus 103 id~ir-~i~~~l~~~~~~----~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~-------------~~~kl 164 (451)
T PRK06305 103 IEDIR-QINETVLFTPSK----SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT-------------EIHKI 164 (451)
T ss_pred HHHHH-HHHHHHHhhhhc----CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC-------------ChHhc
Confidence 46676 355554433222 2468999999999999999999999999866 56788774 26789
Q ss_pred ChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 85 PLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 85 ~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
.++++|||+.++|++++++++.++|..+++++|+.+++++++.|+.. ++||+|.|++.|+.+..+. + +.||.++|
T Consensus 165 ~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~-s~gdlr~a~~~Lekl~~~~---~-~~It~~~V 239 (451)
T PRK06305 165 PGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA-AQGSLRDAESLYDYVVGLF---P-KSLDPDSV 239 (451)
T ss_pred chHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhc---c-CCcCHHHH
Confidence 99999999999999999999999999999999999999999999999 6999999999999876542 2 34998888
Q ss_pred HHHH
Q psy18185 165 LEVS 168 (190)
Q Consensus 165 ~~~~ 168 (190)
..++
T Consensus 240 ~~l~ 243 (451)
T PRK06305 240 AKAL 243 (451)
T ss_pred HHHH
Confidence 7765
No 39
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.8e-17 Score=147.13 Aligned_cols=127 Identities=24% Similarity=0.329 Sum_probs=111.4
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|+||||+|.|+.++++.|++.+|+++. +++|++|+ .+..+.++++|||++++|+|++++++.
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~-------------~~~kl~~tl~sR~~~v~f~~l~~~ei~ 192 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT-------------ELHKIPATIASRCQRFNFKRIPLEEIQ 192 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC-------------ChHHhHHHHHHHHHHhhcCCCCHHHHH
Confidence 3468999999999999999999999999866 56777773 257888999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhh-cCCCcccHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT-NGRTAISKQDILEVS 168 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~-~g~~~It~~~V~~~~ 168 (190)
+++..+++.+|+.++++++++++.. ++||+|.|++.|+.+..++.. .+...||.++|..++
T Consensus 193 ~~l~~~~~~~g~~i~~~al~~l~~~-s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 193 QQLQGICEAEGISVDADALQLIGRK-AQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 9999999999999999999999999 699999999999998877642 223579999898766
No 40
>KOG0991|consensus
Probab=99.76 E-value=4.2e-18 Score=140.81 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHHcCccccC---CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 7 DKLRKEINKVVNKYIDQGIAELV---PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 7 ~~~R~~I~~~v~~~~~~~~~~~~---~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
|-+|+.|.--.++ +..++ .+|+|+||+|.|+..+|.+|.|++|-+.. +.|.++|| + +.
T Consensus 93 DvVRn~IK~FAQ~-----kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN--------~-----s~ 154 (333)
T KOG0991|consen 93 DVVRNKIKMFAQK-----KVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACN--------Q-----SE 154 (333)
T ss_pred HHHHHHHHHHHHh-----hccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhc--------c-----hh
Confidence 4466555444333 33333 47999999999999999999999998766 78999997 3 56
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
.+..++.|||.+++|.++++.++-..|...++.|++.++++++++|... +.||+|+|+|.|+...
T Consensus 155 KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiift-a~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 155 KIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFT-AQGDMRQALNNLQSTV 219 (333)
T ss_pred hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhh-ccchHHHHHHHHHHHh
Confidence 7888899999999999999999999999999999999999999999999 5999999999998765
No 41
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.7e-17 Score=150.06 Aligned_cols=122 Identities=23% Similarity=0.348 Sum_probs=109.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|+||||+|.++.++++.|++.+|+++. +++|++|+ .+..++++++|||+.++|.+++.+++.+
T Consensus 116 ~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~-------------~~~kl~~~I~SRc~~~~f~~ls~~el~~ 182 (504)
T PRK14963 116 GRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT-------------EPEKMPPTILSRTQHFRFRRLTEEEIAG 182 (504)
T ss_pred CCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC-------------ChhhCChHHhcceEEEEecCCCHHHHHH
Confidence 468999999999999999999999999765 57778774 2678899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+|..+++++|+.++++++.+|++. ++||+|.|++.|+.+... ...||.++|..+++
T Consensus 183 ~L~~i~~~egi~i~~~Al~~ia~~-s~GdlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 183 KLRRLLEAEGREAEPEALQLVARL-ADGAMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 999999999999999999999999 699999999999998542 23699999988764
No 42
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=3.5e-17 Score=152.51 Aligned_cols=122 Identities=22% Similarity=0.276 Sum_probs=107.1
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|+||||+|.|+.+++++|++++|+++. .+||++|+ .+..+.++|+|||+.+.|.+++.+++.
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~-------------~~~~llpTIrSRc~~~~f~~l~~~ei~ 186 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT-------------DPQRVLPTIISRCQRFDFRRIPLEAMV 186 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC-------------ChhhhhHHHHhheeEEEecCCCHHHHH
Confidence 3468999999999999999999999999866 67888883 266789999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
.+|..+++++|+.++++++.++++. ++||+|.|+++|+....+. ..||.++|..+.
T Consensus 187 ~~L~~ia~kegi~is~~al~~La~~-s~G~lr~A~~lLeklsL~~-----~~It~e~V~~lv 242 (620)
T PRK14948 187 QHLSEIAEKESIEIEPEALTLVAQR-SQGGLRDAESLLDQLSLLP-----GPITPEAVWDLL 242 (620)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhcc-----CCCCHHHHHHHh
Confidence 9999999999999999999999999 6999999999999876542 258877776544
No 43
>KOG2028|consensus
Probab=99.74 E-value=2.2e-17 Score=143.74 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=123.0
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGI 84 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l 84 (190)
++.++|..+.+.-++ ....+. +.||||||||++++.+|+.|+..+|.+ ..++|+|| ||| |++.+
T Consensus 202 ~t~dvR~ife~aq~~-~~l~kr---kTilFiDEiHRFNksQQD~fLP~VE~G-~I~lIGAT---------TEN--PSFql 265 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNE-KSLTKR---KTILFIDEIHRFNKSQQDTFLPHVENG-DITLIGAT---------TEN--PSFQL 265 (554)
T ss_pred chHHHHHHHHHHHHH-Hhhhcc---eeEEEeHHhhhhhhhhhhcccceeccC-ceEEEecc---------cCC--Cccch
Confidence 678888655554443 333332 479999999999999999999999997 47899999 887 58999
Q ss_pred ChhHhhhhhheeccCCCHHHHHHHHHHHHH------h-------cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-
Q psy18185 85 PLDLLDRLLIIRTTPYNQKDMEAIIKLRAN------T-------EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALT- 150 (190)
Q Consensus 85 ~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~------~-------~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~- 150 (190)
..+++|||.+|.+++++.+++..+|.+... . ..+.+++.++++++.. +.||.|.|+|.|+.....
T Consensus 266 n~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l-sdGDaR~aLN~Lems~~m~ 344 (554)
T KOG2028|consen 266 NAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL-SDGDARAALNALEMSLSMF 344 (554)
T ss_pred hHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh-cCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998554 1 1235889999999999 799999999999988432
Q ss_pred hhhcC---CCcccHHHHHHHH---HhccChH
Q psy18185 151 AKTNG---RTAISKQDILEVS---TLFLDAK 175 (190)
Q Consensus 151 a~~~g---~~~It~~~V~~~~---~~f~~~~ 175 (190)
..++| +..+++++|++.+ .+++|+.
T Consensus 345 ~tr~g~~~~~~lSidDvke~lq~s~~~YDr~ 375 (554)
T KOG2028|consen 345 CTRSGQSSRVLLSIDDVKEGLQRSHILYDRA 375 (554)
T ss_pred HhhcCCcccceecHHHHHHHHhhccceeccc
Confidence 33444 3469999999988 3455543
No 44
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=3.9e-17 Score=143.07 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=99.1
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++| ++.+.+...... ..++|+||||+|.|+.+++|+|++++|+|+. +.||++|+ .|..
T Consensus 122 ~vd~iR-~l~~~l~~~~~~----g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~-------------~~~~ 183 (351)
T PRK09112 122 TVDEIR-RVGHFLSQTSGD----GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISH-------------SSGR 183 (351)
T ss_pred CHHHHH-HHHHHhhhcccc----CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEEC-------------Chhh
Confidence 346776 344443332223 3468999999999999999999999999866 77888884 2778
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPA 147 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~ 147 (190)
++|+++|||+.++|+|++.+++.++|...+...+ ++++++..++.. ++|++|.|+++++..
T Consensus 184 llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~-s~G~pr~Al~ll~~~ 244 (351)
T PRK09112 184 LLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQR-SKGSVRKALLLLNYG 244 (351)
T ss_pred ccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHH-cCCCHHHHHHHHhcC
Confidence 8999999999999999999999999998654443 779999999999 699999999999543
No 45
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7.3e-17 Score=149.68 Aligned_cols=144 Identities=28% Similarity=0.295 Sum_probs=118.3
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+.+++|+ |.+.+.... ....++|+||||+|.|+.++++.|++++|+++. .+||++++ .+.
T Consensus 100 ~~vd~ir~-ii~~~~~~p----~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~-------------~~~ 161 (585)
T PRK14950 100 TSVDDARE-IIERVQFRP----ALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT-------------EVH 161 (585)
T ss_pred CCHHHHHH-HHHHHhhCc----ccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC-------------Chh
Confidence 45567773 334433322 223468999999999999999999999999865 56777773 256
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.++++++|||+.+.|++++.+++..+|..++.++|+.++++++++|+.. ++||+|.|++.|+....+ +.+.||.+
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~-s~Gdlr~al~~LekL~~y----~~~~It~e 236 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA-ATGSMRDAENLLQQLATT----YGGEISLS 236 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh----cCCCCCHH
Confidence 7889999999999999999999999999999999999999999999999 699999999999987654 34579999
Q ss_pred HHHHHHHh
Q psy18185 163 DILEVSTL 170 (190)
Q Consensus 163 ~V~~~~~~ 170 (190)
+|+.++..
T Consensus 237 ~V~~ll~~ 244 (585)
T PRK14950 237 QVQSLLGI 244 (585)
T ss_pred HHHHHhcC
Confidence 99876643
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.73 E-value=6.8e-17 Score=139.99 Aligned_cols=124 Identities=29% Similarity=0.360 Sum_probs=109.1
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|++|||+|.++.++++.|++.+|+++. +++|++|+ .+..++++++|||..+.|+|++.+++.
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~-------------~~~~l~~~l~sr~~~~~~~~~~~~~l~ 182 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATT-------------EPHKIPATILSRCQRFDFKRIPLEDIV 182 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeC-------------CHHHHHHHHHhheeEEEcCCCCHHHHH
Confidence 3468999999999999999999999999766 56677773 266788999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++|..+++++|+.++++++++++.. ++||+|.|++.|+.+..++. +.||.++|++++.
T Consensus 183 ~~l~~~~~~~g~~i~~~a~~~l~~~-~~g~~~~a~~~lekl~~~~~----~~it~~~v~~~~~ 240 (355)
T TIGR02397 183 ERLKKILDKEGIKIEDEALELIARA-ADGSLRDALSLLDQLISFGN----GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-cCCChHHHHHHHHHHHhhcC----CCCCHHHHHHHhC
Confidence 9999999999999999999999999 69999999999998876542 3599999987764
No 47
>KOG2035|consensus
Probab=99.72 E-value=1.1e-16 Score=134.85 Aligned_cols=147 Identities=22% Similarity=0.308 Sum_probs=117.5
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
-+++|++|.|+|.|++++|.+|.|++|.+.+ ..+|+++| +.+.+.+++||||..++.+.+|++|+.
T Consensus 126 r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cn-------------s~SriIepIrSRCl~iRvpaps~eeI~ 192 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCN-------------STSRIIEPIRSRCLFIRVPAPSDEEIT 192 (351)
T ss_pred cceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEec-------------CcccchhHHhhheeEEeCCCCCHHHHH
Confidence 3679999999999999999999999999876 78999996 356788899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhh-cCC-CcccHHH----HHHHHHhccChHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT-NGR-TAISKQD----ILEVSTLFLDAKSSARI 180 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~-~g~-~~It~~~----V~~~~~~f~~~~~~~~~ 180 (190)
.+|...+++||+.++.+.+..|++. |+|++|.|+-+|+.+....+. .+. ..|..++ |++........+..-+.
T Consensus 193 ~vl~~v~~kE~l~lp~~~l~rIa~k-S~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L 271 (351)
T KOG2035|consen 193 SVLSKVLKKEGLQLPKELLKRIAEK-SNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKL 271 (351)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHH-hcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHH
Confidence 9999999999999999999999999 899999999999988753211 111 2333222 34444555555555555
Q ss_pred hHHhhhhh
Q psy18185 181 LTENKDKF 188 (190)
Q Consensus 181 ~~~~~~~~ 188 (190)
+..-++.|
T Consensus 272 ~~vR~~LY 279 (351)
T KOG2035|consen 272 LEVRGRLY 279 (351)
T ss_pred HHHHHHHH
Confidence 55555555
No 48
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=5.9e-17 Score=141.10 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=98.2
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
++-+++|+ +.+.+.....+|. ++|++||++|.|+.+++|+|+|++|+|+. ++||++|+ .|+
T Consensus 88 I~idqiR~-l~~~~~~~~~~g~----~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~-------------~~~ 149 (334)
T PRK07993 88 LGVDAVRE-VTEKLYEHARLGG----AKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACR-------------EPA 149 (334)
T ss_pred CCHHHHHH-HHHHHhhccccCC----ceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEEC-------------Chh
Confidence 67788884 5555554444444 59999999999999999999999999987 78888884 388
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++||++|||+.+.|++++++++.++|... . .++++.+..++.. ++|++..|+.+++
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~---~--~~~~~~a~~~~~l-a~G~~~~Al~l~~ 206 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSRE---V--TMSQDALLAALRL-SAGAPGAALALLQ 206 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHc---c--CCCHHHHHHHHHH-cCCCHHHHHHHhc
Confidence 999999999999999999999999999742 2 3677778888899 6999999998874
No 49
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=1.8e-16 Score=136.96 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=91.7
Q ss_pred HHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCC
Q psy18185 21 IDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY 100 (190)
Q Consensus 21 ~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~l 100 (190)
+.....+..++|++||++|.|+.+++|+|+|++|+|+.++||++|+ .|..++||++|||+.++|+|+
T Consensus 116 l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~-------------~~~~Ll~TI~SRcq~i~f~~l 182 (314)
T PRK07399 116 LSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP-------------SPESLLPTIVSRCQIIPFYRL 182 (314)
T ss_pred HccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC-------------ChHhCcHHHHhhceEEecCCC
Confidence 4444444567999999999999999999999999998778888884 378999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
+++++.++|......++.. .....++.. ++|+++.|++.++...
T Consensus 183 ~~~~~~~~L~~~~~~~~~~---~~~~~l~~~-a~Gs~~~al~~l~~~~ 226 (314)
T PRK07399 183 SDEQLEQVLKRLGDEEILN---INFPELLAL-AQGSPGAAIANIEQLQ 226 (314)
T ss_pred CHHHHHHHHHHhhccccch---hHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 9999999999875443322 225677888 6999999999987543
No 50
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.7e-16 Score=135.69 Aligned_cols=123 Identities=27% Similarity=0.344 Sum_probs=108.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|++|||+|.++..+++.|++.+|+++. +.+|++|+ .+..+.++++|||..++|++++++++..
T Consensus 108 ~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~-------------~~~kl~~~l~sr~~~v~~~~~~~~~l~~ 174 (367)
T PRK14970 108 KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATT-------------EKHKIIPTILSRCQIFDFKRITIKDIKE 174 (367)
T ss_pred CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeC-------------CcccCCHHHHhcceeEecCCccHHHHHH
Confidence 458999999999999999999999999765 56777773 2567889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+|...++++|+.++++++++++.. ++||+|.+++.|+.+..++. . .||.++|+.++.
T Consensus 175 ~l~~~~~~~g~~i~~~al~~l~~~-~~gdlr~~~~~lekl~~y~~---~-~it~~~v~~~~~ 231 (367)
T PRK14970 175 HLAGIAVKEGIKFEDDALHIIAQK-ADGALRDALSIFDRVVTFCG---K-NITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcC---C-CCCHHHHHHHhC
Confidence 999999999999999999999999 69999999999999886653 2 299999988764
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.69 E-value=1.3e-15 Score=130.77 Aligned_cols=141 Identities=19% Similarity=0.205 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHh
Q psy18185 11 KEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLL 89 (190)
Q Consensus 11 ~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~ 89 (190)
+.++++++...........+++|||||+|.++.+.++.|.+++|.++. ..+|++++ .+..+.++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~-------------~~~~~~~~L~ 173 (337)
T PRK12402 107 DNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR-------------QPSKLIPPIR 173 (337)
T ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC-------------ChhhCchhhc
Confidence 345555544433322223458999999999999999999999998655 66777773 1446778899
Q ss_pred hhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 90 DRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 90 SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|||..+.|.|++.+++..+|..++.++|+.+++++++.+++. +.||+|.+++.|+.++. +...||.++|..++.
T Consensus 174 sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~-~~gdlr~l~~~l~~~~~-----~~~~It~~~v~~~~~ 247 (337)
T PRK12402 174 SRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY-AGGDLRKAILTLQTAAL-----AAGEITMEAAYEALG 247 (337)
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999 69999999999987651 223799999988765
Q ss_pred h
Q psy18185 170 L 170 (190)
Q Consensus 170 ~ 170 (190)
.
T Consensus 248 ~ 248 (337)
T PRK12402 248 D 248 (337)
T ss_pred C
Confidence 3
No 52
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=2.3e-16 Score=136.84 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=96.0
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+-+++| ++.+.+.....+|+ ++|++||++|.|+.+++|+|+|++|+|+. +.||++|+ .+.
T Consensus 87 I~id~iR-~l~~~~~~~~~~g~----~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~-------------~~~ 148 (325)
T PRK06871 87 IGVDQVR-EINEKVSQHAQQGG----NKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQAD-------------LSA 148 (325)
T ss_pred CCHHHHH-HHHHHHhhccccCC----ceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC-------------ChH
Confidence 5678888 46566555555554 59999999999999999999999999987 77888883 388
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 146 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~ 146 (190)
.++||++|||+.+.|+|++++++.++|.... ..+++.+..++.. ++|.+..|+.++..
T Consensus 149 ~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l-~~g~p~~A~~~~~~ 206 (325)
T PRK06871 149 ALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRI-NYGRPLLALTFLEQ 206 (325)
T ss_pred hCchHHHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHH-cCCCHHHHHHHhhC
Confidence 9999999999999999999999999998653 2344456667777 68989888887643
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.68 E-value=6.7e-17 Score=133.12 Aligned_cols=109 Identities=28% Similarity=0.317 Sum_probs=88.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-------------------CEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-------------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-------------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
..||||||||+|++.+|.+|+.++|++.- -++|+|| |. ++.+++++++
T Consensus 102 ~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT---------Tr----~g~ls~pLrd 168 (233)
T PF05496_consen 102 GDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT---------TR----AGLLSSPLRD 168 (233)
T ss_dssp T-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE---------SS----GCCTSHCCCT
T ss_pred CcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee---------cc----ccccchhHHh
Confidence 36999999999999999999999996531 2678888 42 6778899999
Q ss_pred hhhhe-eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy18185 91 RLLII-RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 91 R~~~i-~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~ 152 (190)
|+.++ ++..|+.+|+.+|+.+.+...++.++++++..|+.+ |+|++|.|.++|.++..+|+
T Consensus 169 RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~r-srGtPRiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 169 RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARR-SRGTPRIANRLLRRVRDFAQ 230 (233)
T ss_dssp TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHC-TTTSHHHHHHHHHHHCCCCC
T ss_pred hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHh-cCCChHHHHHHHHHHHHHHH
Confidence 99765 799999999999999999999999999999999999 89999999999999877664
No 54
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.68 E-value=4.1e-16 Score=135.54 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=95.6
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.|-|++|+ +.+.+.....++ .++|++||++|.|+.+++|+|+|++|+|+. ..||++|+ .+.
T Consensus 86 i~id~iR~-l~~~~~~~~~~~----~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~-------------~~~ 147 (328)
T PRK05707 86 IKVDQVRE-LVSFVVQTAQLG----GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISH-------------QPS 147 (328)
T ss_pred CCHHHHHH-HHHHHhhccccC----CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEEC-------------Chh
Confidence 56688884 444444433333 469999999999999999999999999877 67888884 378
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++||++|||+.+.|+|++.+++.++|.... + ..+++.+..++.. ++|++..|+.+++
T Consensus 148 ~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~~~l~l-a~Gsp~~A~~l~~ 205 (328)
T PRK05707 148 RLLPTIKSRCQQQACPLPSNEESLQWLQQAL---P-ESDERERIELLTL-AGGSPLRALQLHE 205 (328)
T ss_pred hCcHHHHhhceeeeCCCcCHHHHHHHHHHhc---c-cCChHHHHHHHHH-cCCCHHHHHHHHC
Confidence 8999999999999999999999999997643 1 2456677778888 6999999988764
No 55
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.67 E-value=3.2e-15 Score=127.38 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=107.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.+++++|||+|.|+.+.++.|.+.+|.++. +.+|+++| .+..+.++++|||..++|+|++++++.+
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~-------------~~~~l~~~l~sr~~~~~~~~l~~~ei~~ 168 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN-------------YSSKIIDPIQSRCAVFRFSPLKKEAVAE 168 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC-------------CccccchhHHHHhheeeeCCCCHHHHHH
Confidence 458999999999999999999999998655 67788774 1456778899999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+|..+++++|+.+++++++++++. ++||+|.|++.|+.+... ...||.++|..+..
T Consensus 169 ~l~~~~~~~~~~i~~~al~~l~~~-~~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 169 RLRYIAENEGIEITDDALEAIYYV-SEGDMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 999999999999999999999999 699999999999987653 24699999888764
No 56
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.67 E-value=1.4e-15 Score=139.70 Aligned_cols=126 Identities=31% Similarity=0.313 Sum_probs=111.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-----------------------------CCEEEEEecCCcccccCCCCCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-----------------------------APIVIFATNRGRCLVRGTDDIIS 80 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-----------------------------~~~iIlatn~~~~~~~~t~~~~~ 80 (190)
.|+|||||+|.|++.+|+.|++++|+.. ...+|++|+ . +
T Consensus 176 gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt---------~---~ 243 (531)
T TIGR02902 176 GGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATT---------R---N 243 (531)
T ss_pred CcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEec---------C---C
Confidence 4899999999999999999999998631 125677773 2 4
Q ss_pred CCCCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCccc
Q psy18185 81 PHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 160 (190)
Q Consensus 81 ~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It 160 (190)
|..++++++|||..+.|+||+++|+..+++..+++.++.+++++++.|+.++ . +.|.++++++.++.+|..+++..||
T Consensus 244 p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~-~-n~Rel~nll~~Aa~~A~~~~~~~It 321 (531)
T TIGR02902 244 PEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA-S-NGREAVNIVQLAAGIALGEGRKRIL 321 (531)
T ss_pred cccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh-h-hHHHHHHHHHHHHHHHhhCCCcEEc
Confidence 7889999999999999999999999999999999999999999999999984 3 7899999999999888777888899
Q ss_pred HHHHHHHHH
Q psy18185 161 KQDILEVST 169 (190)
Q Consensus 161 ~~~V~~~~~ 169 (190)
.+++.+++.
T Consensus 322 ~~dI~~vl~ 330 (531)
T TIGR02902 322 AEDIEWVAE 330 (531)
T ss_pred HHHHHHHhC
Confidence 999999985
No 57
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=5.1e-16 Score=125.62 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=91.1
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhh-------------eec
Q psy18185 32 VLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI-------------IRT 97 (190)
Q Consensus 32 Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~-------------i~~ 97 (190)
.++|+++|.|+.+++|+|++++|+|+. +.||++|+ +++.++||++|||+. +.|
T Consensus 57 k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~-------------~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l 123 (206)
T PRK08485 57 KIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAK-------------SKNLLLPTIRSRLIIEKRKQKKPVKPLDLDL 123 (206)
T ss_pred EEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeC-------------ChHhCchHHHhhheecccccccccccccccc
Confidence 356889999999999999999999887 78888883 388999999999986 779
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAAL 149 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~ 149 (190)
++++.+++.+.|.. .+++++...+++++.|+.. +.|.+|.++.+.+.+..
T Consensus 124 ~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~l-a~~s~r~~l~l~~q~l~ 173 (206)
T PRK08485 124 KKLDLKDIYEFLKE-LEKENKLSKEELKELIESL-LKECVKYKIPLNEEELE 173 (206)
T ss_pred CCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHH-HHHHHHHHcCccHHHHH
Confidence 99999999999998 6778888889999999999 59999999888877653
No 58
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.6e-15 Score=128.25 Aligned_cols=127 Identities=29% Similarity=0.309 Sum_probs=114.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-------------------CEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-------------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-------------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
..|+||||||+|++.....|+.+||+..- .++|+|| | ....++.++|+
T Consensus 104 ~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT---------T----r~G~lt~PLrd 170 (332)
T COG2255 104 GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT---------T----RAGMLTNPLRD 170 (332)
T ss_pred CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec---------c----ccccccchhHH
Confidence 37999999999999999999999995430 2688998 4 26778889999
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|+ .+.+++-|+.+|+..++.+.+...+++++++++..|+++ |+|.+|.|.++|.+...+|+-.|...|+.+.+.+++.
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r-SRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~ 249 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR-SRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALK 249 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 98 566899999999999999999999999999999999999 7999999999999999999999999999999998885
Q ss_pred h
Q psy18185 170 L 170 (190)
Q Consensus 170 ~ 170 (190)
+
T Consensus 250 ~ 250 (332)
T COG2255 250 M 250 (332)
T ss_pred H
Confidence 4
No 59
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.66 E-value=2e-15 Score=142.70 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=104.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
.++|||||||.|++..|++|++.+|++ ..++|.+| |++ +.+.++++++|||.++.|+|++.+++..++
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~lE~g-~IiLI~aT---------Ten--p~~~l~~aL~SR~~v~~l~pLs~edi~~IL 177 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWVENG-TITLIGAT---------TEN--PYFEVNKALVSRSRLFRLKSLSDEDLHQLL 177 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHhcCc-eEEEEEec---------CCC--hHhhhhhHhhccccceecCCCCHHHHHHHH
Confidence 479999999999999999999999985 34555566 443 356788999999999999999999999999
Q ss_pred HHHHH-------hcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCC--cccHHHHHHHH
Q psy18185 110 KLRAN-------TEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT--AISKQDILEVS 168 (190)
Q Consensus 110 ~~~~~-------~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~--~It~~~V~~~~ 168 (190)
++.+. .+++.++++++++|++. +.||+|.+++.|+.+...+...+.. .||.+.+++++
T Consensus 178 ~~~l~~~~~~~g~~~v~I~deaL~~La~~-s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l 244 (725)
T PRK13341 178 KRALQDKERGYGDRKVDLEPEAEKHLVDV-ANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESI 244 (725)
T ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence 99887 46789999999999999 6999999999999987544322222 38888888876
No 60
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.66 E-value=1.7e-15 Score=125.72 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=103.2
Q ss_pred eEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCC---CChhHhhhh---hheecc
Q psy18185 31 GVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHG---IPLDLLDRL---LIIRTT 98 (190)
Q Consensus 31 ~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~---l~~~l~SR~---~~i~~~ 98 (190)
.+|||||+|.+.. ..|+.+++.+|.+. +.+|++++ . +|.. +.++++||| .+++++
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~-~~li~ts~--------~----~p~~l~~~~~~L~SRl~~g~~~~l~ 165 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGR-TRLLITGD--------R----PPRQLNLGLPDLASRLDWGQIYKLQ 165 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCC-CeEEEeCC--------C----ChHHcCcccHHHHHHHhCCceeeec
Confidence 6899999999953 34788888888653 45777774 1 4555 468999999 899999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|++++++..+|++++...|+.++++++++|+++ ++||+|.+++.|+.+...+... ..+||++.++++++
T Consensus 166 ~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~-~~~d~r~l~~~l~~l~~~~l~~-~~~it~~~~k~~l~ 234 (235)
T PRK08084 166 PLSDEEKLQALQLRARLRGFELPEDVGRFLLKR-LDREMRTLFMTLDQLDRASITA-QRKLTIPFVKEILK 234 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHc
Confidence 999999999999989889999999999999999 6999999999999976444333 34699999999875
No 61
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.65 E-value=9.5e-16 Score=132.72 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=83.9
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|++||++|.|+.+++|+|+|++|+|+. ++||++|+ .+..++||++|||+.+.|.+++.+++.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~-------------~~~~lLpTIrSRCq~i~~~~~~~~~~~ 178 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISA-------------QPARLPATIRSRCQRLEFKLPPAHEAL 178 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEEC-------------ChhhCchHHHhhheEeeCCCcCHHHHH
Confidence 3469999999999999999999999999877 67888884 378899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
++|.. .| ++++.+..++.. ++|.+..|+.++.
T Consensus 179 ~~L~~----~~--~~~~~a~~~~~l-~~G~p~~A~~~~~ 210 (319)
T PRK08769 179 AWLLA----QG--VSERAAQEALDA-ARGHPGLAAQWLR 210 (319)
T ss_pred HHHHH----cC--CChHHHHHHHHH-cCCCHHHHHHHhc
Confidence 99964 23 456656677888 6999988888773
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=7.7e-15 Score=130.92 Aligned_cols=123 Identities=28% Similarity=0.376 Sum_probs=104.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
.+||||||+|.++..+++.|++.+|++ ..++|++| |++ +...++++++|||.++.|++++.+++..+|
T Consensus 93 ~~vL~IDEi~~l~~~~q~~LL~~le~~-~iilI~at---------t~n--~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL 160 (413)
T PRK13342 93 RTILFIDEIHRFNKAQQDALLPHVEDG-TITLIGAT---------TEN--PSFEVNPALLSRAQVFELKPLSEEDIEQLL 160 (413)
T ss_pred ceEEEEechhhhCHHHHHHHHHHhhcC-cEEEEEeC---------CCC--hhhhccHHHhccceeeEeCCCCHHHHHHHH
Confidence 479999999999999999999999985 34566666 443 356788999999999999999999999999
Q ss_pred HHHHHh--cCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 110 KLRANT--EGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 110 ~~~~~~--~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
...+.. .|+ .+++++++.+++. +.||+|.++++|+.+... ...||.+++++++..
T Consensus 161 ~~~l~~~~~~~i~i~~~al~~l~~~-s~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 161 KRALEDKERGLVELDDEALDALARL-ANGDARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 988764 355 8999999999999 699999999999998753 346999999988753
No 63
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=5.8e-15 Score=127.80 Aligned_cols=128 Identities=27% Similarity=0.304 Sum_probs=110.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-------------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-------------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-------------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.+|+||||+|.++...++.|+..+|+.. +..+|++|+ .+..++++++|
T Consensus 103 ~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~-------------~~~~l~~~L~s 169 (328)
T PRK00080 103 GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT-------------RAGLLTSPLRD 169 (328)
T ss_pred CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC-------------CcccCCHHHHH
Confidence 4799999999999989999999888642 124566663 25678889999
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|| ..+.|++|+.+++.++|++.+...++.++++++.+|+++ ++|++|.|.++|..+..++...+...||.++++.++.
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~-~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARR-SRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALD 248 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 98 578999999999999999999999999999999999999 7999999999999988888766677899999999986
Q ss_pred hc
Q psy18185 170 LF 171 (190)
Q Consensus 170 ~f 171 (190)
.+
T Consensus 249 ~~ 250 (328)
T PRK00080 249 ML 250 (328)
T ss_pred Hh
Confidence 54
No 64
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=3.5e-15 Score=127.19 Aligned_cols=127 Identities=25% Similarity=0.299 Sum_probs=108.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------------C-CEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------------A-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------------~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
..++||||+|.+++..++.|+.++++.. + ..+|++|+ .+..++++++|
T Consensus 82 ~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~-------------~~~~l~~~l~s 148 (305)
T TIGR00635 82 GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT-------------RAGMLTSPLRD 148 (305)
T ss_pred CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC-------------CccccCHHHHh
Confidence 4799999999999999999998887533 1 24555553 25678889999
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|| ..+.|.+|+.+++.+++..++...++.++++++.+|++. ++|++|.+.++++.+...|...+...||.++|+.++.
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~-~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~ 227 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARR-SRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALE 227 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH-hCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 99 567999999999999999999999999999999999999 7999999999999988777666667899999999886
Q ss_pred h
Q psy18185 170 L 170 (190)
Q Consensus 170 ~ 170 (190)
.
T Consensus 228 ~ 228 (305)
T TIGR00635 228 M 228 (305)
T ss_pred H
Confidence 5
No 65
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.63 E-value=2.7e-15 Score=129.87 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=91.2
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+-|++| ++.+.+...... ..++|++||++|.|+.+++|+|+|++|+|+. ++||++|+ .|.
T Consensus 88 I~vdqiR-~l~~~~~~~~~~----~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~-------------~~~ 149 (319)
T PRK06090 88 ITVEQIR-QCNRLAQESSQL----NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH-------------NQK 149 (319)
T ss_pred CCHHHHH-HHHHHHhhCccc----CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC-------------Chh
Confidence 4567777 354444433333 3469999999999999999999999999987 78888884 388
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++||++|||+.+.|++++++++.++|.. .|+. ....++.. ++|++..|+.+++
T Consensus 150 ~lLpTI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l-~~G~p~~A~~~~~ 203 (319)
T PRK06090 150 RLLPTIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKL-NMGSPLKTLAMMK 203 (319)
T ss_pred hChHHHHhcceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHH-cCCCHHHHHHHhC
Confidence 99999999999999999999999999964 3433 23456777 5899998988874
No 66
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=3.8e-15 Score=132.38 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=93.5
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
++-+++|+ +.+.+.. ......++|+||||+|.|+++++|+|++++|+|+. +.||++|+ .+.
T Consensus 97 i~i~~iR~-l~~~~~~----~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~-------------~~~ 158 (394)
T PRK07940 97 IGVDEVRE-LVTIAAR----RPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP-------------SPE 158 (394)
T ss_pred CCHHHHHH-HHHHHHh----CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC-------------ChH
Confidence 34566663 3333332 23333568999999999999999999999999876 67888773 278
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++|+++|||+.+.|++++.+++.++|... .| ++++++..++.. ++|+++.|+.++.
T Consensus 159 ~llpTIrSRc~~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~-s~G~~~~A~~l~~ 215 (394)
T PRK07940 159 DVLPTIRSRCRHVALRTPSVEAVAEVLVRR---DG--VDPETARRAARA-SQGHIGRARRLAT 215 (394)
T ss_pred HChHHHHhhCeEEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHH-cCCCHHHHHHHhc
Confidence 899999999999999999999999999732 34 678889999999 6999999987763
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.62 E-value=3.2e-15 Score=119.37 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=82.2
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|++|||+|.|+.++++.|++.+|+++. +.+|++|+ .+..++++++|||+++.|+|++.+|+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~-------------~~~~l~~~i~sr~~~~~~~~~~~~~~~ 161 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITP-------------SPEKLLPTIRSRCQVLPFPPLSEEALL 161 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC-------------ChHhChHHHHhhcEEeeCCCCCHHHHH
Confidence 3568999999999999999999999999765 67777774 256889999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYV 140 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~a 140 (190)
++|... | ++++++++++.. ++||+|.|
T Consensus 162 ~~l~~~----g--i~~~~~~~i~~~-~~g~~r~~ 188 (188)
T TIGR00678 162 QWLIRQ----G--ISEEAAELLLAL-AGGSPGAA 188 (188)
T ss_pred HHHHHc----C--CCHHHHHHHHHH-cCCCcccC
Confidence 999875 4 789999999999 69999975
No 68
>PRK06620 hypothetical protein; Validated
Probab=99.62 E-value=1.5e-14 Score=118.70 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=101.6
Q ss_pred eEEEEecCCCCC-HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh---heeccCCCHHHHH
Q psy18185 31 GVLFIDEVHMLD-LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL---IIRTTPYNQKDME 106 (190)
Q Consensus 31 ~Il~IDEi~~L~-~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~---~i~~~~ls~~ei~ 106 (190)
.+++|||+|.+. ...++.++.+.|.+. .++++++ +.+ +...+ ++++||+. ++.+++++++++.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~--~ilits~--------~~p--~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQK--YLLLTSS--------DKS--RNFTL-PDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCC--EEEEEcC--------CCc--cccch-HHHHHHHhCCceEeeCCCCHHHHH
Confidence 699999999986 478888888888864 3555553 322 22335 89999986 9999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
.+++++++..|+.++++++++|+++ ++||+|.+++.|+.+...+...+ ..||.+.+++++
T Consensus 154 ~~l~k~~~~~~l~l~~ev~~~L~~~-~~~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 154 ILIFKHFSISSVTISRQIIDFLLVN-LPREYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 9999999889999999999999999 69999999999999876555444 479999999875
No 69
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.62 E-value=3.9e-15 Score=141.33 Aligned_cols=146 Identities=22% Similarity=0.260 Sum_probs=115.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCC----CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--heeccCCCHHH
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIA----PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--IIRTTPYNQKD 104 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~----~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--~i~~~~ls~~e 104 (190)
.||+|||+|.|....+..|+.+++.+.. ..+|+++|. .+ .|..+.+.++|||. .+.|+||+.+|
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd-------lD---LperLdPRLRSRLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT-------MD---LPERLIPRCRSRLAFGRLVFSPYKGDE 940 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc-------hh---cchhhhhhhhhccccccccCCCCCHHH
Confidence 5899999999987677778877775322 567777762 21 25567788999985 48999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh-ccChH-HHHHH
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEIG--TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL-FLDAK-SSARI 180 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~-f~~~~-~~~~~ 180 (190)
+.+||..|++.....++++++++||+.+ ..||+|.||++|..|+..+ +...|+.++|++|... +.+.. .+++.
T Consensus 941 L~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE~srI~e~Ikt 1017 (1164)
T PTZ00112 941 IEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLFDSPLTNAINY 1017 (1164)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHhhhHHHHHHc
Confidence 9999999998654569999999999953 4699999999999998653 3458999999999844 55553 46999
Q ss_pred hHHhhhhhc
Q psy18185 181 LTENKDKFM 189 (190)
Q Consensus 181 ~~~~~~~~~ 189 (190)
+..+++.+|
T Consensus 1018 LPlHqKLVL 1026 (1164)
T PTZ00112 1018 LPWPFKMFL 1026 (1164)
T ss_pred CCHHHHHHH
Confidence 999999876
No 70
>PRK08727 hypothetical protein; Validated
Probab=99.61 E-value=4.4e-14 Score=117.10 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=99.0
Q ss_pred eEEEEecCCCCC--HHHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCC---ChhHhhh---hhheeccCC
Q psy18185 31 GVLFIDEVHMLD--LETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGI---PLDLLDR---LLIIRTTPY 100 (190)
Q Consensus 31 ~Il~IDEi~~L~--~~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l---~~~l~SR---~~~i~~~~l 100 (190)
.+|+|||+|.+. .+.+..+..+++.. .+..+|+++| . +|..+ .++++|| |++++|+|+
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~--------~----~p~~l~~~~~dL~SRl~~~~~~~l~~~ 162 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTAR--------Q----MPDGLALVLPDLRSRLAQCIRIGLPVL 162 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECC--------C----ChhhhhhhhHHHHHHHhcCceEEecCC
Confidence 699999999995 33333444444321 1234777775 2 35555 6899999 899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+++++.++|+.++..+|+.++++++++|+++ ++||+|.++++|+.+...+...+ +.||.+.+++++.
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~-~~rd~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTH-GERELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLE 229 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 9999999999999999999999999999999 69999999999998875554444 4799999998875
No 71
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=6.2e-15 Score=126.07 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=89.0
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
+|-+++|+ +.+.+.. ...+..++|++||++|.|+.+++|+|+|++|+|+. ++||++|+ ++.
T Consensus 84 I~idqIR~-l~~~~~~----~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~-------------~~~ 145 (290)
T PRK07276 84 IKTDTIRE-LVKNFSQ----SGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTN-------------DEN 145 (290)
T ss_pred CCHHHHHH-HHHHHhh----CcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEEC-------------Chh
Confidence 46677773 4444333 33334569999999999999999999999999987 78888884 378
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++||++|||+.+.|++ +.+++.++|. ++| ++++....++.. .|++..|+.++.
T Consensus 146 ~lLpTI~SRcq~i~f~~-~~~~~~~~L~----~~g--~~~~~a~~la~~--~~s~~~A~~l~~ 199 (290)
T PRK07276 146 KVLPTIKSRTQIFHFPK-NEAYLIQLLE----QKG--LLKTQAELLAKL--AQSTSEAEKLAQ 199 (290)
T ss_pred hCchHHHHcceeeeCCC-cHHHHHHHHH----HcC--CChHHHHHHHHH--CCCHHHHHHHhC
Confidence 99999999999999977 7888887775 345 456666777766 457999988873
No 72
>PRK04195 replication factor C large subunit; Provisional
Probab=99.61 E-value=2.9e-14 Score=129.56 Aligned_cols=137 Identities=22% Similarity=0.299 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCcccc-CCeEEEEecCCCCCH----HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCCh
Q psy18185 12 EINKVVNKYIDQGIAEL-VPGVLFIDEVHMLDL----ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPL 86 (190)
Q Consensus 12 ~I~~~v~~~~~~~~~~~-~~~Il~IDEi~~L~~----~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~ 86 (190)
.|...+........... .++||+|||+|.|+. ..++.|+++++.+..| +|+++| . +..+++
T Consensus 80 ~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~-iIli~n--------~-----~~~~~~ 145 (482)
T PRK04195 80 VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQP-IILTAN--------D-----PYDPSL 145 (482)
T ss_pred HHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCC-EEEecc--------C-----ccccch
Confidence 44455554433322221 468999999999976 6789999999976555 556664 1 445555
Q ss_pred -hHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 87 -DLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 87 -~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
++++||..+.|++++.+++..+|+.++..+|+.+++++++.|++. ++||+|.|++.|+.++ .|.+.||.+++.
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~-s~GDlR~ain~Lq~~a-----~~~~~it~~~v~ 219 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAER-SGGDLRSAINDLQAIA-----EGYGKLTLEDVK 219 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHh-----cCCCCCcHHHHH
Confidence 899999999999999999999999999999999999999999999 6999999999998743 355678888887
Q ss_pred HHH
Q psy18185 166 EVS 168 (190)
Q Consensus 166 ~~~ 168 (190)
.+.
T Consensus 220 ~~~ 222 (482)
T PRK04195 220 TLG 222 (482)
T ss_pred Hhh
Confidence 654
No 73
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=6.6e-15 Score=128.58 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=88.9
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
++-|++| ++.+.+.. ...+..++|+|||++|.|+.+++|+|+|++|+|+. ++||++|+ .|.
T Consensus 112 I~idqiR-~l~~~~~~----~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~-------------~~~ 173 (342)
T PRK06964 112 IKIEQVR-ALLDFCGV----GTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSA-------------RID 173 (342)
T ss_pred cCHHHHH-HHHHHhcc----CCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEEC-------------Chh
Confidence 4556777 34444333 33334569999999999999999999999999887 78888884 388
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLL 144 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL 144 (190)
.++||++|||+.+.|+|++.+++.++|... | +++. +.++.. ++|++..|+.++
T Consensus 174 ~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~-~~Gsp~~Al~~~ 226 (342)
T PRK06964 174 RLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAE-AGGAPLAALALA 226 (342)
T ss_pred hCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHH-cCCCHHHHHHHH
Confidence 999999999999999999999999999753 3 3332 334666 589998888776
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=1.2e-14 Score=127.99 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=93.7
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++| ++.+. +........++|++|||+|.|+.+++|+|++++|+++. ++||++|+ .++.
T Consensus 122 ~VdqiR-~l~~~----~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~-------------~~~~ 183 (365)
T PRK07471 122 TVDEVR-ELISF----FGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSH-------------APAR 183 (365)
T ss_pred cHHHHH-HHHHH----hCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEEC-------------Cchh
Confidence 345665 23333 33333334568999999999999999999999999875 77888885 2677
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
++++++|||+.++|+|++.+++.++|.... ...+++.+..++.. ++|+++.|+.+++
T Consensus 184 llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~-s~Gsp~~Al~ll~ 240 (365)
T PRK07471 184 LLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAAL-AEGSVGRALRLAG 240 (365)
T ss_pred chHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHH-cCCCHHHHHHHhc
Confidence 899999999999999999999999997642 34556666888888 6999999999985
No 75
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=1.5e-14 Score=124.53 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=93.4
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
++.+++|+-+ +.+.. ......++|++||++|.|+.+++|+|++++|+|+. +.||++|+ .|.
T Consensus 73 i~v~~ir~~~-~~~~~----~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~-------------~~~ 134 (313)
T PRK05564 73 IGVDDIRNII-EEVNK----KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE-------------NLE 134 (313)
T ss_pred CCHHHHHHHH-HHHhc----CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC-------------ChH
Confidence 4567777433 33333 23334569999999999999999999999999876 67777773 277
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLL 144 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL 144 (190)
.+++|++|||+.+.|++++++++..+|..... .++++++..++.. ++|++..|...+
T Consensus 135 ~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~-~~g~~~~a~~~~ 191 (313)
T PRK05564 135 QILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAF-SDGIPGKVEKFI 191 (313)
T ss_pred hCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHH-cCCCHHHHHHHh
Confidence 89999999999999999999999999976542 4678889989888 588888776554
No 76
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.58 E-value=6.6e-15 Score=125.57 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=87.2
Q ss_pred HhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHHHHHHHhc------CCCCCHHHH
Q psy18185 52 ALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTE------GHVLDDEAL 125 (190)
Q Consensus 52 ~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~------~~~i~~e~l 125 (190)
.+|++ ..++|+|| ||| |.+.+.++|+|||++|+|+|++.+++..+|++....+ ++.++++++
T Consensus 3 ~vE~G-~i~LIGAT---------TEN--P~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al 70 (300)
T PRK14700 3 YVESG-KIILIGAT---------TEN--PTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLY 70 (300)
T ss_pred CccCC-cEEEEeec---------CCC--ccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHH
Confidence 45664 47889999 888 5899999999999999999999999999999988642 368999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 126 VTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 126 ~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
++|+.. ++||.|.|+|+|+.+...+...+...||.+.|++++
T Consensus 71 ~~ia~~-a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~ 112 (300)
T PRK14700 71 NAMHNY-NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAV 112 (300)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHH
Confidence 999999 699999999999997753322222359999999877
No 77
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=1.5e-14 Score=125.59 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=83.3
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++|++|||+|.|+.+++|+|++++|+|+. +.||++|+ .+..++++++|||+.++|+|++++++.
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~-------------~~~~ll~TIrSRc~~i~~~~~~~~~~~ 175 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTE-------------NKHQILPTILSRCQVVEFRPLPPESLI 175 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeC-------------ChHhCcHHHHhhceeeeCCCCCHHHHH
Confidence 3569999999999999999999999999877 67888883 377999999999999999999999998
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 146 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~ 146 (190)
++|.. +| ++++...+++.. .|+++.|+.+++.
T Consensus 176 ~~L~~----~g--i~~~~~~~l~~~--~g~~~~A~~l~~~ 207 (329)
T PRK08058 176 QRLQE----EG--ISESLATLLAGL--TNSVEEALALSED 207 (329)
T ss_pred HHHHH----cC--CChHHHHHHHHH--cCCHHHHHHHhcC
Confidence 88863 45 567777777776 4789999988753
No 78
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=2.6e-14 Score=120.20 Aligned_cols=138 Identities=15% Similarity=0.154 Sum_probs=96.6
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+.+++|+ +.+.+.....++ ..++|++||++|.|+.+++|+|+|++|+|+. ++||+.|+ .+.
T Consensus 67 I~id~ir~-l~~~l~~~s~e~---~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~-------------~~~ 129 (261)
T PRK05818 67 IKKEDALS-IINKLNRPSVES---NGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTR-------------NEN 129 (261)
T ss_pred CCHHHHHH-HHHHHccCchhc---CCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEEC-------------ChH
Confidence 56677773 443333211111 2369999999999999999999999999887 78888884 378
Q ss_pred CCChhHhhhhhheeccCC----------CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy18185 83 GIPLDLLDRLLIIRTTPY----------NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~l----------s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~ 152 (190)
.++||++|||+.+.|+++ +++++.+.|... .+ +++ .++.. ++|++..|+.+++...
T Consensus 130 ~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~L~~~---~~--~d~----~i~~~-a~g~~~~a~~l~~~l~---- 195 (261)
T PRK05818 130 NILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYILLSF---YS--VDE----QLQAY-NNGSFSKLKNIIETLI---- 195 (261)
T ss_pred hCchHhhhheeeeecCChhhhcccccccChHHHHHHHHHc---cC--ccH----HHHHH-cCCCHHHHHHHHHHHH----
Confidence 999999999999999998 666777666533 22 444 45555 6999999999998431
Q ss_pred hcCCCcccHHHHHHHHHhccChH
Q psy18185 153 TNGRTAISKQDILEVSTLFLDAK 175 (190)
Q Consensus 153 ~~g~~~It~~~V~~~~~~f~~~~ 175 (190)
......++ |.++..+|.++.
T Consensus 196 n~~~~~~~---v~kl~~~~~~~~ 215 (261)
T PRK05818 196 NKKNKLIQ---IHKAWILFKTFS 215 (261)
T ss_pred cccccHHH---HHHHHHHHHhhh
Confidence 12222344 455555555544
No 79
>PRK06893 DNA replication initiation factor; Validated
Probab=99.56 E-value=1e-13 Score=114.54 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=98.8
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCC---ChhHhhhhh---heec
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGI---PLDLLDRLL---IIRT 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l---~~~l~SR~~---~i~~ 97 (190)
..+|+|||+|.+.. ..++.+++..+.+ ++++|++++ . +|..+ .++++|||. ++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~-~~illits~--------~----~p~~l~~~~~~L~sRl~~g~~~~l 158 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQG-KTLLLISAD--------C----SPHALSIKLPDLASRLTWGEIYQL 158 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-CcEEEEeCC--------C----ChHHccccchhHHHHHhcCCeeeC
Confidence 37999999999852 3445555555543 344555564 2 24444 389999985 8999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+++++++...+|++.+...++.++++++++|+++ ++||+|.+++.|+.....+...++ .||++.|++++++
T Consensus 159 ~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~-~~~d~r~l~~~l~~l~~~~~~~~~-~it~~~v~~~L~~ 229 (229)
T PRK06893 159 NDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKR-LDRDMHTLFDALDLLDKASLQAQR-KLTIPFVKEILGL 229 (229)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcC
Confidence 9999999999999999999999999999999999 699999999999988644443344 7999999998753
No 80
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.55 E-value=1.8e-13 Score=120.46 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=115.9
Q ss_pred eEEEEecCCCCC----HHHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hheeccCCCH
Q psy18185 31 GVLFIDEVHMLD----LETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTPYNQ 102 (190)
Q Consensus 31 ~Il~IDEi~~L~----~~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i~~~~ls~ 102 (190)
.||+|||+|.+. .+..+.|.+..+.... ..+|+++|. . + .+..+.+.++||+ ..+.|+||+.
T Consensus 140 ~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~-------~-~--~~~~l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 140 LIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD-------L-T--FLYILDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred EEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC-------c-c--hhhhcCHHHHhcCCcceeecCCCCH
Confidence 688999999996 4667777777765433 457777752 1 1 2344667788887 5789999999
Q ss_pred HHHHHHHHHHHHhc--CCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccC-h-HH
Q psy18185 103 KDMEAIIKLRANTE--GHVLDDEALVTLSEIG--TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLD-A-KS 176 (190)
Q Consensus 103 ~ei~~iL~~~~~~~--~~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~-~-~~ 176 (190)
+|+.++|+.+++.. +..+++++++.+++.+ ..||+|.|+++|..|...|..+|...||.++|.++...... . ..
T Consensus 210 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~ 289 (394)
T PRK00411 210 DEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSE 289 (394)
T ss_pred HHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999998652 3368999999999983 16999999999999998888888889999999999965422 2 23
Q ss_pred HHHHhHHhhhhhc
Q psy18185 177 SARILTENKDKFM 189 (190)
Q Consensus 177 ~~~~~~~~~~~~~ 189 (190)
.++.++.+++.|+
T Consensus 290 ~~~~L~~~~k~~L 302 (394)
T PRK00411 290 VLRTLPLHEKLLL 302 (394)
T ss_pred HHhcCCHHHHHHH
Confidence 5888899988876
No 81
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=5.5e-14 Score=120.14 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=78.8
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+-+++| ++.+.+... ..+..++|++||++|.|+.+++|+|+|++|+|+. ++||++|+ ++.
T Consensus 75 I~idqiR-~l~~~~~~~----p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~-------------~~~ 136 (290)
T PRK05917 75 HSIETPR-AIKKQIWIH----PYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSA-------------KPQ 136 (290)
T ss_pred CcHHHHH-HHHHHHhhC----ccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeC-------------Chh
Confidence 4566776 344444443 3444569999999999999999999999999887 78888884 388
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLR 138 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR 138 (190)
.++||++|||+.++|+|+. ...++++.+..++.. +.|+++
T Consensus 137 ~ll~TI~SRcq~~~~~~~~---------------~~~i~~~~~~~l~~~-~~g~~~ 176 (290)
T PRK05917 137 RLPPTIRSRSLSIHIPMEE---------------KTLVSKEDIAYLIGY-AQGKES 176 (290)
T ss_pred hCcHHHHhcceEEEccchh---------------ccCCCHHHHHHHHHH-hCCChh
Confidence 9999999999999999861 114678888888888 588774
No 82
>PRK05642 DNA replication initiation factor; Validated
Probab=99.53 E-value=5.2e-13 Score=110.79 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=98.9
Q ss_pred eEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCCC
Q psy18185 31 GVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPYN 101 (190)
Q Consensus 31 ~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~ls 101 (190)
.+|+|||+|.+.. +.++.++...|.+. .+|++++ +. +.......++++||+ .++++++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~--~ilits~--------~~-p~~l~~~~~~L~SRl~~gl~~~l~~~~ 167 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR--RLLLAAS--------KS-PRELPIKLPDLKSRLTLALVFQMRGLS 167 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCC--EEEEeCC--------CC-HHHcCccCccHHHHHhcCeeeecCCCC
Confidence 6899999998842 35566666666543 3666664 32 111222358999998 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+++...+|+.++...|+.++++++++|+++ ++||+|.+.+.|+.....+...+ +.||++.++++++
T Consensus 168 ~e~~~~il~~ka~~~~~~l~~ev~~~L~~~-~~~d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L~ 233 (234)
T PRK05642 168 DEDKLRALQLRASRRGLHLTDEVGHFILTR-GTRSMSALFDLLERLDQASLQAQ-RKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHhc
Confidence 999999999889888999999999999999 69999999999998876554433 5799999999875
No 83
>PRK09087 hypothetical protein; Validated
Probab=99.52 E-value=3.9e-13 Score=111.22 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=103.3
Q ss_pred eEEEEecCCCCC---HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCC-CChhHhhhh---hheeccCCCHH
Q psy18185 31 GVLFIDEVHMLD---LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHG-IPLDLLDRL---LIIRTTPYNQK 103 (190)
Q Consensus 31 ~Il~IDEi~~L~---~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~-l~~~l~SR~---~~i~~~~ls~~ 103 (190)
++|+|||+|.+. .+.++.++.+.|.+. .+|++++ +.+ +... ..++++||| .++++++++++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~--~ilits~--------~~p--~~~~~~~~dL~SRl~~gl~~~l~~pd~e 156 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGT--SLLMTSR--------LWP--SSWNVKLPDLKSRLKAATVVEIGEPDDA 156 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCC--eEEEECC--------CCh--HHhccccccHHHHHhCCceeecCCCCHH
Confidence 689999999984 367777778887753 3666664 321 1122 357899998 89999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
++..+|+++++..|+.++++++++|+++ +.||+|.++..|..+...+...+ .+||++.++++++.+
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~-~~r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSR-MERSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999 69999999998888876665544 479999999999765
No 84
>KOG0990|consensus
Probab=99.50 E-value=1e-13 Score=118.80 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=98.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++.+|+||+|.++.++||+|.|.+|.... ..|++.+| +|..+.|+++|||+.++|.|++.++...
T Consensus 131 ~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n-------------~~~ki~pa~qsRctrfrf~pl~~~~~~~ 197 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISN-------------PPQKIHPAQQSRCTRFRFAPLTMAQQTE 197 (360)
T ss_pred ceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEecc-------------ChhhcCchhhcccccCCCCCCChhhhhh
Confidence 579999999999999999999999998765 67777775 4888999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAAL 149 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~ 149 (190)
.+..+++.+..++++++...++.. +.||+|.|+|.|+...-
T Consensus 198 r~shi~e~e~~~~~~~~~~a~~r~-s~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 198 RQSHIRESEQKETNPEGYSALGRL-SVGDMRVALNYLQSILK 238 (360)
T ss_pred HHHHHHhcchhhcCHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 89999999999998763
No 85
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=2.3e-13 Score=116.95 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|++||++|.|+.+++|+|++++|+||. +++|++|+ .+..+++|++|||++++|.|++++++.+
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~-------------~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTK-------------NINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeC-------------ChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 469999999999999999999999999887 67777773 2688999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
+|... | ++++....++.. ++ ++..|+.++.
T Consensus 157 ~l~~~----~--~~~~~a~~~a~~-~~-~~~~a~~~~~ 186 (299)
T PRK07132 157 KLLSK----N--KEKEYNWFYAYI-FS-NFEQAEKYIN 186 (299)
T ss_pred HHHHc----C--CChhHHHHHHHH-cC-CHHHHHHHHh
Confidence 98743 3 678888888888 35 5988888764
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=8.7e-13 Score=114.84 Aligned_cols=150 Identities=19% Similarity=0.215 Sum_probs=110.1
Q ss_pred CeEEEEecCCCCCH---HHHHHHHHHh--hccC--CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hheeccCC
Q psy18185 30 PGVLFIDEVHMLDL---ETFTYLHRAL--ESAI--APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~~---~~~~~L~~~~--E~~~--~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i~~~~l 100 (190)
+.||+|||+|.|.. +..+.|.+.. +..+ ...+|+++|. +..+..+.+.+.||+ ..+.|+||
T Consensus 130 ~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~----------~~~~~~l~~~~~s~~~~~~i~f~p~ 199 (365)
T TIGR02928 130 SLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND----------LKFRENLDPRVKSSLCEEEIIFPPY 199 (365)
T ss_pred eEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC----------cchHhhcCHHHhccCCcceeeeCCC
Confidence 36899999999943 4455566652 2222 2467777752 111235677888998 46899999
Q ss_pred CHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc-Ch-
Q psy18185 101 NQKDMEAIIKLRANT--EGHVLDDEALVTLSEIG--TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL-DA- 174 (190)
Q Consensus 101 s~~ei~~iL~~~~~~--~~~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~-~~- 174 (190)
+.+|+.++|+.+++. .+..++++++++++..+ +.||+|.|+++|..|...|..++...||.++|..+..... +.
T Consensus 200 ~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~ 279 (365)
T TIGR02928 200 DAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRL 279 (365)
T ss_pred CHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999863 23358999999887763 3699999999999999888888888999999999885542 22
Q ss_pred HHHHHHhHHhhhhhc
Q psy18185 175 KSSARILTENKDKFM 189 (190)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (190)
...++.++.+++.++
T Consensus 280 ~~~i~~l~~~~~~~l 294 (365)
T TIGR02928 280 LELIRGLPTHSKLVL 294 (365)
T ss_pred HHHHHcCCHHHHHHH
Confidence 234777777777554
No 87
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.47 E-value=2.4e-12 Score=110.22 Aligned_cols=118 Identities=21% Similarity=0.161 Sum_probs=94.4
Q ss_pred CCeEEEEecCCCC-CHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 29 VPGVLFIDEVHML-DLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 29 ~~~Il~IDEi~~L-~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
.++|++|||+|.+ ..++++.|.+++|+++. ..+|++|| .+..++++++|||..+.|++++.++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n-------------~~~~l~~~l~sR~~~i~~~~p~~~~~~ 166 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN-------------NKNGIIEPLRSRCRVIDFGVPTKEEQI 166 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC-------------ChhhchHHHHhhceEEEeCCCCHHHHH
Confidence 4689999999999 77888999999998655 56777774 256788999999999999999998877
Q ss_pred HHHH-------HHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 107 AIIK-------LRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 107 ~iL~-------~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
+++. .++.++|+.++++++..+++. +.||+|.+++.|+.... ...|+.+++..
T Consensus 167 ~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~-~~~d~r~~l~~l~~~~~------~~~i~~~~l~~ 226 (316)
T PHA02544 167 EMMKQMIVRCKGILEAEGVEVDMKVLAALVKK-NFPDFRRTINELQRYAS------TGKIDAGILSE 226 (316)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHc------cCCCCHHHHHH
Confidence 5543 345568999999999999999 69999999999986642 13566655443
No 88
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.46 E-value=9.2e-14 Score=118.37 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChh
Q psy18185 9 LRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLD 87 (190)
Q Consensus 9 ~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~ 87 (190)
.+++|.+..... ........++|++|||+|.|+.+++++|++++|+++. ..||++|| .|..+.++
T Consensus 90 ~~~~vr~~~~~~-~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n-------------~~~~il~t 155 (325)
T COG0470 90 IVEQVRELAEFL-SESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN-------------DPSKILPT 155 (325)
T ss_pred hHHHHHHHHHHh-ccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC-------------Chhhccch
Confidence 445555555543 3333334579999999999999999999999999877 67888885 37889999
Q ss_pred HhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy18185 88 LLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALT 150 (190)
Q Consensus 88 l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~ 150 (190)
++|||+.++|+|.+. +..++..+ ++++..++.. ++||+|.+++.|+.....
T Consensus 156 I~SRc~~i~f~~~~~------~~~i~~~e-----~~~l~~i~~~-~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 156 IRSRCQRIRFKPPSR------LEAIAWLE-----DQGLEEIAAV-AEGDARKAINPLQALAAL 206 (325)
T ss_pred hhhcceeeecCCchH------HHHHHHhh-----ccchhHHHHH-HHHHHHcCCCHHHHHHHh
Confidence 999999999999433 33333333 6788888888 699999999999988754
No 89
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.46 E-value=1e-13 Score=109.02 Aligned_cols=80 Identities=28% Similarity=0.378 Sum_probs=57.7
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
++-+++| +++. +.........++|++|||+|.|+.+++|+|+|++|+|+. +.||++|+ .+.
T Consensus 82 i~i~~ir----~i~~-~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~-------------~~~ 143 (162)
T PF13177_consen 82 IKIDQIR----EIIE-FLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN-------------NPS 143 (162)
T ss_dssp BSHHHHH----HHHH-HCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES--------------GG
T ss_pred hhHHHHH----HHHH-HHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC-------------ChH
Confidence 3456666 3322 233444445679999999999999999999999999977 78888884 378
Q ss_pred CCChhHhhhhhheeccCCC
Q psy18185 83 GIPLDLLDRLLIIRTTPYN 101 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls 101 (190)
.+++|++|||+.++|+|+|
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 9999999999999999975
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.45 E-value=3.4e-12 Score=104.66 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=102.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc---CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCCCHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPYNQK 103 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~---~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~ls~~ 103 (190)
.++++|||+|.++...+..|..+++.. ..+.++++++ ..+ ....+.++++||+ ..++++|++++
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~---------~~~-~~~~l~~~L~sr~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGP---------AAP-LALPLREDLRTRLGWGLVYELKPLSDA 160 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCC---------CCH-HhCCCCHHHHHHHhcCeEEEecCCCHH
Confidence 479999999999988888888888642 1234555552 111 1223558899996 78999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+...+|...+...|+.++++++.+|+++ +.||+|.+.++|+....++...+ ..||.+.|++++.
T Consensus 161 ~~~~~l~~~~~~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 161 DKIAALKAAAAERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 9999999888889999999999999998 89999999999999877665544 5899999999875
No 91
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=1.1e-12 Score=109.16 Aligned_cols=123 Identities=12% Similarity=0.146 Sum_probs=92.1
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+-+++| ++.+.+.....+| .++|++||++|.|+.+++|+|+|++|+|+. +.||+.|+ .+.
T Consensus 69 I~IdqIR-eL~~~l~~~p~~g----~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~-------------~~~ 130 (263)
T PRK06581 69 ISIEQIR-KLQDFLSKTSAIS----GYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITS-------------RAA 130 (263)
T ss_pred ccHHHHH-HHHHHHhhCcccC----CcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeC-------------Chh
Confidence 5678888 3555555444444 459999999999999999999999999887 67788773 378
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
.++||++|||+.+.|+..++.+...+...-+.- -.++.-+++|.+. ..-|....+...+.+.
T Consensus 131 ~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~-~~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 131 SIISTIRSRCFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRF-TTKDRELWLDFIDNLL 192 (263)
T ss_pred hCchhHhhceEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 999999999999999999997777666543321 2455668888888 4556655555555544
No 92
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.7e-12 Score=114.46 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=110.7
Q ss_pred eEEEEecCCCCCHH---HHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--heeccCCCHHH
Q psy18185 31 GVLFIDEVHMLDLE---TFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--IIRTTPYNQKD 104 (190)
Q Consensus 31 ~Il~IDEi~~L~~~---~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--~i~~~~ls~~e 104 (190)
-|++|||+|.|... ..+.|.+..+.... ..+|+.+| +.+ -...+.+.++|+.. .+.|+||+.+|
T Consensus 125 ~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n--------~~~--~~~~ld~rv~s~l~~~~I~F~pY~a~e 194 (366)
T COG1474 125 VIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSN--------DDK--FLDYLDPRVKSSLGPSEIVFPPYTAEE 194 (366)
T ss_pred EEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEec--------cHH--HHHHhhhhhhhccCcceeeeCCCCHHH
Confidence 58889999999654 55566666555522 45666665 211 13445677888863 47799999999
Q ss_pred HHHHHHHHHHh--cCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc-ChH-HHH
Q psy18185 105 MEAIIKLRANT--EGHVLDDEALVTLSEIG--TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL-DAK-SSA 178 (190)
Q Consensus 105 i~~iL~~~~~~--~~~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~-~~~-~~~ 178 (190)
+.+||..|++. ..-.++++++++++..+ ..||+|.|+.+|..|+..|++++++.++.++|+.+..... +.. ..+
T Consensus 195 l~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~ 274 (366)
T COG1474 195 LYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVL 274 (366)
T ss_pred HHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHH
Confidence 99999999984 34479999999999773 4579999999999999999999999999999999853221 222 347
Q ss_pred HHhHHhhhhhc
Q psy18185 179 RILTENKDKFM 189 (190)
Q Consensus 179 ~~~~~~~~~~~ 189 (190)
+.++.+++.++
T Consensus 275 ~~L~~~~ki~L 285 (366)
T COG1474 275 KTLPLHQKIVL 285 (366)
T ss_pred HcCCHhHHHHH
Confidence 77777776543
No 93
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.37 E-value=7.8e-12 Score=105.05 Aligned_cols=112 Identities=26% Similarity=0.283 Sum_probs=89.5
Q ss_pred CeEEEEecCCCCC--------HHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccC
Q psy18185 30 PGVLFIDEVHMLD--------LETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTP 99 (190)
Q Consensus 30 ~~Il~IDEi~~L~--------~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ 99 (190)
.+||||||+|.|. .++++.|++.+|+... +.+|+++. +....+...++|+++||| ..+.|++
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~--------~~~~~~~~~~~p~L~sRf~~~i~f~~ 177 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY--------SDEMDYFLSLNPGLRSRFPISIDFPD 177 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC--------cchhHHHHhcChHHHhccceEEEECC
Confidence 3799999999985 4688999999998755 45566653 111112345678999999 5699999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc---------CCCCHHHHHHHHHHHHH
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG---------TRSTLRYVVQLLTPAAL 149 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a---------~~gdlR~ai~lL~~~~~ 149 (190)
|+.+|+.+++++.+...+..+++++++++++.. +.||.|.+.|+++.+..
T Consensus 178 ~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 178 YTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 999999999999999889999999999996541 35899999999999773
No 94
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.37 E-value=9.5e-12 Score=116.27 Aligned_cols=127 Identities=27% Similarity=0.267 Sum_probs=102.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC---------------------------CC--EEEEEecCCcccccCCCCCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI---------------------------AP--IVIFATNRGRCLVRGTDDIIS 80 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~---------------------------~~--~iIlatn~~~~~~~~t~~~~~ 80 (190)
.|+|||||+|.|+...|+.|++++|+.. .. ++|.+| +. .
T Consensus 266 gGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aT---------t~---~ 333 (615)
T TIGR02903 266 GGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGAT---------TR---D 333 (615)
T ss_pred CCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEec---------cc---c
Confidence 4799999999999999999999998642 11 233334 32 2
Q ss_pred CCCCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--------
Q psy18185 81 PHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK-------- 152 (190)
Q Consensus 81 ~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~-------- 152 (190)
+..++++++|||..+.|+|++.+|+..+++..+.+.++.+++++++.|+.++ ++.|.|++.|..+..++.
T Consensus 334 ~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~ 411 (615)
T TIGR02903 334 PEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGK 411 (615)
T ss_pred ccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678899999999999999999999999999999888889999999999994 366999999987765431
Q ss_pred hcCCCcccHHHHHHHHHh
Q psy18185 153 TNGRTAISKQDILEVSTL 170 (190)
Q Consensus 153 ~~g~~~It~~~V~~~~~~ 170 (190)
..+...||.++|.++++.
T Consensus 412 ~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 412 ENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCeeECHHHHHHHhCC
Confidence 112336999999999853
No 95
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.36 E-value=1.3e-11 Score=100.56 Aligned_cols=124 Identities=20% Similarity=0.231 Sum_probs=98.4
Q ss_pred eEEEEecCCCCCH--HHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCC--CC-hhHhhhh---hheeccCC
Q psy18185 31 GVLFIDEVHMLDL--ETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHG--IP-LDLLDRL---LIIRTTPY 100 (190)
Q Consensus 31 ~Il~IDEi~~L~~--~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~--l~-~~l~SR~---~~i~~~~l 100 (190)
++|+|||+|.++. +.+..|..+++.. .+..+|++++ + ++.. +. +++++|+ ..++++|+
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~--------~----~~~~~~~~~~~L~~r~~~~~~i~l~~l 159 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGR--------A----APAQLPLRLPDLRTRLAWGLVFQLPPL 159 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECC--------C----ChHHCCcccHHHHHHHhcCeeEecCCC
Confidence 6999999999976 3367777766541 1234666664 2 1322 23 7899997 47999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
++++...+++..+.+.++.++++++++|++. +.|++|.+.++|+.+...+...| +.||.+.|++++
T Consensus 160 ~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 160 SDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 9999999999988888999999999999998 89999999999999887766555 479999999875
No 96
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.34 E-value=1.2e-11 Score=111.51 Aligned_cols=126 Identities=24% Similarity=0.299 Sum_probs=101.4
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCC---CChhHhhhh---hheec
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHG---IPLDLLDRL---LIIRT 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~---l~~~l~SR~---~~i~~ 97 (190)
..+|+|||+|.+.. +.++.++...+.+. + +|++++ . +|.. +.+.++||+ .++.|
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~-~-iiits~--------~----~p~~l~~l~~~l~SRl~~gl~v~i 277 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGK-Q-IVLTSD--------R----PPKELPGLEERLRSRFEWGLTVDI 277 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCC-c-EEEECC--------C----CHHHHHHHHHHHHhHhcCCeeEEe
Confidence 37999999999853 34555556666653 3 666664 2 3444 557899998 58999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
++++.++..++|+.+++..++.++++++++|+.+ ..||+|.+...|..+..++...+ ..||.+.+++++...
T Consensus 278 ~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~-~~~~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~ 349 (450)
T PRK00149 278 EPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKN-ITSNVRELEGALNRLIAYASLTG-KPITLELAKEALKDL 349 (450)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC-cCCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 69999999999988887776554 469999999999754
No 97
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.26 E-value=7.9e-11 Score=104.70 Aligned_cols=129 Identities=23% Similarity=0.294 Sum_probs=98.8
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCC
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~l 100 (190)
..+|+|||+|.+.. +.++.+....+.+. + +|++++. .+.....+.+.++||+ ..+.|+++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~-~-iiits~~---------~p~~l~~l~~~l~SRl~~g~~v~i~~p 268 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGK-Q-IVLTSDR---------PPKELPGLEERLRSRFEWGLVVDIEPP 268 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCC-C-EEEecCC---------CHHHHhhhhhhhhhhccCCeEEEeCCC
Confidence 37999999999853 24445555555543 3 6666641 1111233557899998 57999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
+.++...+|+.+++..++.++++++++|+++ ..||+|.+...|..+..++...+ ..||.+.+++++...
T Consensus 269 d~~~r~~il~~~~~~~~~~l~~e~l~~ia~~-~~~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 269 DLETRLAILQKKAEEEGLELPDEVLEFIAKN-IRSNVRELEGALNRLLAYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999 69999998888887776665544 469999999988654
No 98
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=1.2e-10 Score=105.26 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=99.6
Q ss_pred CeEEEEecCCCCC--H----HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCC---CCChhHhhhh---hheec
Q psy18185 30 PGVLFIDEVHMLD--L----ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPH---GIPLDLLDRL---LIIRT 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~--~----~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~---~l~~~l~SR~---~~i~~ 97 (190)
..+|+|||+|.+. . +.++.++...+.+. .+|++++. +|. .+.+.++||+ .++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k--~iIltsd~------------~P~~l~~l~~rL~SR~~~Gl~~~L 272 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDK--QLFFSSDK------------SPELLNGFDNRLITRFNMGLSIAI 272 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCC--cEEEECCC------------CHHHHhhccHHHHHHHhCCceecc
Confidence 3799999999996 2 35555666666653 37787752 243 3457899997 58999
Q ss_pred cCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcC-CCcccHHHHHHHHHh
Q psy18185 98 TPYNQKDMEAIIKLRANTEGH--VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNG-RTAISKQDILEVSTL 170 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~--~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g-~~~It~~~V~~~~~~ 170 (190)
+|++.++..++|+.+++..|+ .++++++++|+.. ++||+|.+.+.|..+...+.... ...||++.|++++.-
T Consensus 273 ~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~-~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 273 QKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNY-YSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 999999999999999988775 7999999999999 79999999999999876665432 247999999888854
No 99
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=8.7e-11 Score=106.06 Aligned_cols=128 Identities=16% Similarity=0.247 Sum_probs=98.2
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCC
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~l 100 (190)
.++|+|||+|.+.. +.+..++...+.+. .+|++++ . .+.....+.++++||| ..+.++|+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k--~IIlts~--------~-~p~~l~~l~~rL~SR~~~Gl~~~l~~p 271 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGK--LIVISST--------C-APQDLKAMEERLISRFEWGIAIPLHPL 271 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCC--cEEEecC--------C-CHHHHhhhHHHHHhhhcCCeEEecCCC
Confidence 47999999999953 34455555555543 3667664 2 1112234568999998 78999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHhhhcCCCcccHHHHHHHHHh
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA---LTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~---~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+.++...+|+.+++..|+.++++++++|+.. ..||+|.+.+.|..+. .++...| ..||++.+++++.-
T Consensus 272 d~e~r~~iL~~k~~~~~~~l~~evl~~la~~-~~~dir~L~g~l~~l~~~~a~~~~~~-~~i~~~~~~~~l~~ 342 (445)
T PRK12422 272 TKEGLRSFLERKAEALSIRIEETALDFLIEA-LSSNVKSLLHALTLLAKRVAYKKLSH-QLLYVDDIKALLHD 342 (445)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 6999999999999884 3443333 36888888888753
No 100
>CHL00181 cbbX CbbX; Provisional
Probab=99.24 E-value=8.1e-11 Score=100.64 Aligned_cols=111 Identities=26% Similarity=0.249 Sum_probs=87.8
Q ss_pred CeEEEEecCCCC---------CHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-heecc
Q psy18185 30 PGVLFIDEVHML---------DLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRTT 98 (190)
Q Consensus 30 ~~Il~IDEi~~L---------~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-~i~~~ 98 (190)
.+||||||+|.| +.++++.|++.+|+... +.+|++++ .+.+.....+.|+|+|||. .+.|+
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~--------~~~~~~~~~~np~L~sR~~~~i~F~ 194 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGY--------KDRMDKFYESNPGLSSRIANHVDFP 194 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC--------cHHHHHHHhcCHHHHHhCCceEEcC
Confidence 489999999997 56899999999998655 56667663 1111011234689999985 79999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG-------TRSTLRYVVQLLTPAA 148 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a-------~~gdlR~ai~lL~~~~ 148 (190)
+|+.+|+.+++...+++.+..+++++...+..+. .-|+.|.+-++++.+.
T Consensus 195 ~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 195 DYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred CcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999888777751 2378999999998877
No 101
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.22 E-value=3.1e-10 Score=101.06 Aligned_cols=128 Identities=24% Similarity=0.332 Sum_probs=109.5
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCC---hhHhhhh---hheec
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIP---LDLLDRL---LIIRT 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~---~~l~SR~---~~i~~ 97 (190)
-.+++|||+|.+.. +.|+.++.+.+.+. .+|+++.+ +|..++ ++++||+ +++.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr------------~P~~l~~~~~rL~SR~~~Gl~~~I 241 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDR------------PPKELNGLEDRLRSRLEWGLVVEI 241 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCC------------CchhhccccHHHHHHHhceeEEee
Confidence 37999999999953 68899999999976 48888853 355554 8999996 78999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccC
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLD 173 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~ 173 (190)
.|++++....+|+.+++..|+.++++++.+++++ ..+|+|.+...|..+..++...++ .||.+.|++++..+.-
T Consensus 242 ~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~-~~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 242 EPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKR-LDRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLR 315 (408)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 699999999999999888776555 8999999999865443
No 102
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=4.2e-11 Score=104.09 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=74.1
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
++-+++|+ +.+.+......+ .++|++||++|.|+.++++.|++++|+++. .++|++|+ .+.
T Consensus 93 I~id~iR~-l~~~~~~~p~~~----~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth-------------~~~ 154 (325)
T PRK08699 93 IKIDAVRE-IIDNVYLTSVRG----GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSH-------------AAD 154 (325)
T ss_pred cCHHHHHH-HHHHHhhCcccC----CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeC-------------ChH
Confidence 46788884 555554433333 469999999999999999999999999865 67888884 267
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKL 111 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~ 111 (190)
.++++++|||+.+.|+|++.+++.++|..
T Consensus 155 ~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 KVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 89999999999999999999999999964
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.20 E-value=2.6e-10 Score=93.88 Aligned_cols=111 Identities=26% Similarity=0.388 Sum_probs=80.9
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCC
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~l 100 (190)
..+|+|||+|.+.. ..++.++...+.+. .+|++++. .|.....+.++++||+ ..++++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k--~li~ts~~---------~P~~l~~~~~~L~SRl~~Gl~~~l~~p 166 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGK--QLILTSDR---------PPSELSGLLPDLRSRLSWGLVVELQPP 166 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTS--EEEEEESS----------TTTTTTS-HHHHHHHHCSEEEEE---
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCC--eEEEEeCC---------CCccccccChhhhhhHhhcchhhcCCC
Confidence 48999999999964 34455555555543 47777742 2212234568999996 68999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~ 152 (190)
++++..++|+.++...|+.++++++++|+++ .++|+|.....|+....+++
T Consensus 167 d~~~r~~il~~~a~~~~~~l~~~v~~~l~~~-~~~~~r~L~~~l~~l~~~~~ 217 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERGIELPEEVIEYLARR-FRRDVRELEGALNRLDAYAQ 217 (219)
T ss_dssp -HHHHHHHHHHHHHHTT--S-HHHHHHHHHH-TTSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 69999999999998877654
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=1.6e-10 Score=104.12 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=99.6
Q ss_pred CeEEEEecCCCCC------HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCC---CChhHhhhhh---heec
Q psy18185 30 PGVLFIDEVHMLD------LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHG---IPLDLLDRLL---IIRT 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~------~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~---l~~~l~SR~~---~i~~ 97 (190)
..+|+|||+|.+. .+.+..++...+.+. .+|++++ . +|.. +.+.++||+. ++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k--~iIitsd--------~----~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK--QIVICSD--------R----EPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC--eEEEECC--------C----CHHHHHHHHHHHhhHHhcCceEee
Confidence 4799999999883 135555555556543 3666663 1 2443 3468999985 8899
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
+|++.+....+|+.+++.+++.++++++++|+++ ..||+|.+...|.....++...| ..||.+.+++++.-+
T Consensus 261 ~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~-~~~~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~ 332 (440)
T PRK14088 261 EPPDEETRKKIARKMLEIEHGELPEEVLNFVAEN-VDDNLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDF 332 (440)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 69999999999988877666554 469999999888644
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.18 E-value=2.4e-10 Score=108.78 Aligned_cols=133 Identities=21% Similarity=0.236 Sum_probs=102.5
Q ss_pred CeEEEEecCCCCC---------HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCC
Q psy18185 30 PGVLFIDEVHMLD---------LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~---------~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~l 100 (190)
+.||||||+|.|. .++++.|...++++ ...+|++|| .+.+.++....+++++||+.+.++++
T Consensus 275 ~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt--------~~e~~~~~~~d~al~rRf~~i~v~~p 345 (731)
T TIGR02639 275 NAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTT--------YEEYKNHFEKDRALSRRFQKIDVGEP 345 (731)
T ss_pred CeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecC--------HHHHHHHhhhhHHHHHhCceEEeCCC
Confidence 4799999999994 35789999999875 467888884 21223456678899999999999999
Q ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHHhhhc----CCCcccHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGTR--ST---LRYVVQLLTPAALTAKTN----GRTAISKQDILEV 167 (190)
Q Consensus 101 s~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~--gd---lR~ai~lL~~~~~~a~~~----g~~~It~~~V~~~ 167 (190)
+.++...+|+..... .++.++++++.+++..+.+ ++ ++.|+.+|+.++....-. ....||.++|..+
T Consensus 346 ~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~ 425 (731)
T TIGR02639 346 SIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENV 425 (731)
T ss_pred CHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHH
Confidence 999999999976653 4678999999999999422 23 789999999877432211 1345999999998
Q ss_pred HHhc
Q psy18185 168 STLF 171 (190)
Q Consensus 168 ~~~f 171 (190)
+..+
T Consensus 426 i~~~ 429 (731)
T TIGR02639 426 VAKM 429 (731)
T ss_pred HHHH
Confidence 8554
No 106
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.17 E-value=2.3e-10 Score=97.70 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=89.7
Q ss_pred CeEEEEecCCCC---------CHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheecc
Q psy18185 30 PGVLFIDEVHML---------DLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTT 98 (190)
Q Consensus 30 ~~Il~IDEi~~L---------~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~ 98 (190)
.+||||||+|.| +.+.++.|++.+|.... +++|++++ ++.......+.|+|+||| ..+.|+
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~--------~~~~~~~~~~np~L~sR~~~~i~fp 193 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGY--------KDRMDSFFESNPGFSSRVAHHVDFP 193 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC--------cHHHHHHHhhCHHHHhhCCcEEEeC
Confidence 389999999988 35788999999998654 56666663 111111233468999999 579999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-------cCCCCHHHHHHHHHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI-------GTRSTLRYVVQLLTPAAL 149 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~-------a~~gdlR~ai~lL~~~~~ 149 (190)
+|+.+|+..++...+++.+..+++++.+.+..+ .+-|+.|.+-|+++.+..
T Consensus 194 ~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 194 DYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred CcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 999999999999999998889999999998876 345899999999998873
No 107
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=3.5e-10 Score=105.90 Aligned_cols=129 Identities=10% Similarity=0.157 Sum_probs=87.5
Q ss_pred CCeEEEEecC----CCCCHHHHHHHH-HHhhccCCCEEEEEecCCcccccCCCCCC----------CCCC-CChhHhh--
Q psy18185 29 VPGVLFIDEV----HMLDLETFTYLH-RALESAIAPIVIFATNRGRCLVRGTDDII----------SPHG-IPLDLLD-- 90 (190)
Q Consensus 29 ~~~Il~IDEi----~~L~~~~~~~L~-~~~E~~~~~~iIlatn~~~~~~~~t~~~~----------~~~~-l~~~l~S-- 90 (190)
...||+|||+ |..+...++.|. ...+.+..| +|++++ |++. +.+. +.+++++
T Consensus 195 ~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~p-LI~I~T---------E~~~~~~~~~~~~f~~~~lL~~eLls~~ 264 (637)
T TIGR00602 195 DKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCP-LVFIIT---------ESLEGDNNQRRLLFPAETIMNKEILEEP 264 (637)
T ss_pred ceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCce-EEEEec---------CCccccccccccccchhcccCHhHhccc
Confidence 3579999999 443444444444 355554334 666562 2210 0111 3478998
Q ss_pred hhhheeccCCCHHHHHHHHHHHHHhcCCC------C-CHHHHHHHHHhcCCCCHHHHHHHHHHHH----HHhhhcCCCcc
Q psy18185 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHV------L-DDEALVTLSEIGTRSTLRYVVQLLTPAA----LTAKTNGRTAI 159 (190)
Q Consensus 91 R~~~i~~~~ls~~ei~~iL~~~~~~~~~~------i-~~e~l~~i~~~a~~gdlR~ai~lL~~~~----~~a~~~g~~~I 159 (190)
||.+|.|+|++..++...|.++++.++.. + +++++..|+.. +.||+|.||+.|+.++ .++...+...+
T Consensus 265 rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~-s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~v 343 (637)
T TIGR00602 265 RVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG-CSGDIRSAINSLQFSSSKSGSLPIKKRMSTK 343 (637)
T ss_pred ceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh-CCChHHHHHHHHHHHHhcCCccccccccccc
Confidence 56779999999999999999999875432 2 56899999998 7999999999999984 33444455667
Q ss_pred cHHHHHHHH
Q psy18185 160 SKQDILEVS 168 (190)
Q Consensus 160 t~~~V~~~~ 168 (190)
+..+|..+.
T Consensus 344 s~~hv~~a~ 352 (637)
T TIGR00602 344 SDAHASKSK 352 (637)
T ss_pred cHHHhhhcc
Confidence 777766543
No 108
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=8.1e-10 Score=102.74 Aligned_cols=129 Identities=17% Similarity=0.168 Sum_probs=103.2
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCC
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~l 100 (190)
..+|+|||+|.+.. +.|+.++...+.+.. +|++++. .+.....+.+.|+||+ .++.++++
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~--IIITSd~---------~P~eL~~l~~rL~SRf~~GLvv~I~~P 446 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQ--IVLSSDR---------PPKQLVTLEDRLRNRFEWGLITDVQPP 446 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCC--EEEecCC---------ChHhhhhccHHHHhhhhcCceEEcCCC
Confidence 47999999999932 467777777776543 6677752 1111234568899996 68999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
+.+....||+.+++..|+.++++++++|+++ ..+|+|.+...|..+..++...+ ..||++.+++++.-+
T Consensus 447 D~EtR~aIL~kka~~r~l~l~~eVi~yLa~r-~~rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~ 515 (617)
T PRK14086 447 ELETRIAILRKKAVQEQLNAPPEVLEFIASR-ISRNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDL 515 (617)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999 69999999999988877666544 469999998888644
No 109
>KOG1514|consensus
Probab=99.13 E-value=5.2e-10 Score=104.10 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=118.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCC----EEEEEecCCcccccCCCCCCCCCCCC-hhHhhhh--hheeccCCCH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAP----IVIFATNRGRCLVRGTDDIISPHGIP-LDLLDRL--LIIRTTPYNQ 102 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~----~iIlatn~~~~~~~~t~~~~~~~~l~-~~l~SR~--~~i~~~~ls~ 102 (190)
.-|+.|||.|.|-...|..|+.+.+++..+ ++|.++| |.+ -|..+. .-.-||. +.+.|.||+.
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN--------Tmd--lPEr~l~nrvsSRlg~tRi~F~pYth 578 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN--------TMD--LPERLLMNRVSSRLGLTRICFQPYTH 578 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc--------ccc--CHHHHhccchhhhccceeeecCCCCH
Confidence 468889999999999999999999997652 4555555 543 233332 3566775 7899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhhcCC-------CcccHHHHHHHHHhccC
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEI--GTRSTLRYVVQLLTPAALTAKTNGR-------TAISKQDILEVSTLFLD 173 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~--a~~gdlR~ai~lL~~~~~~a~~~g~-------~~It~~~V~~~~~~f~~ 173 (190)
+|+.+++.-+.+... .+++++++++++. |..||+|.|+.++.+|...|..... ..|++-+|.++..-+++
T Consensus 579 ~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 579 EQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred HHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhh
Confidence 999999998876653 5789999999987 3579999999999999988875433 45899999999977776
Q ss_pred hHH--HHHHhHHhhhhhc
Q psy18185 174 AKS--SARILTENKDKFM 189 (190)
Q Consensus 174 ~~~--~~~~~~~~~~~~~ 189 (190)
.-. +++.+++.++-|+
T Consensus 658 ~~~~~~i~glS~~~k~fl 675 (767)
T KOG1514|consen 658 SPYIKALKGLSFLQKIFL 675 (767)
T ss_pred hhHHHHhcchHHHHHHHH
Confidence 664 5999999999886
No 110
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.08 E-value=1.8e-09 Score=104.29 Aligned_cols=145 Identities=21% Similarity=0.248 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCH--------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCC
Q psy18185 8 KLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL--------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDII 79 (190)
Q Consensus 8 ~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~--------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~ 79 (190)
++.+.+.+++.+....+ ...||||||+|.|.. ++.+.|...++.+ ...+|++|+ .+.+.
T Consensus 263 e~e~~lk~ii~e~~~~~----~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT--------~~e~~ 329 (852)
T TIGR03345 263 EFENRLKSVIDEVKASP----QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATT--------WAEYK 329 (852)
T ss_pred HHHHHHHHHHHHHHhcC----CCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecC--------HHHHh
Confidence 33356666666643322 247999999999953 3456788999886 478999994 22233
Q ss_pred CCCCCChhHhhhhhheeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH
Q psy18185 80 SPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGT-----RSTLRYVVQLLTPAALT 150 (190)
Q Consensus 80 ~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~-----~gdlR~ai~lL~~~~~~ 150 (190)
++....++|++||+.|.+++++.++...+|+..... .++.++++++.+++..+. +.=+.+||.+|+.|+..
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHH
Confidence 566788999999999999999999999997655432 478999999999999942 23468999999988743
Q ss_pred h-hhcCCCcccHHHHH
Q psy18185 151 A-KTNGRTAISKQDIL 165 (190)
Q Consensus 151 a-~~~g~~~It~~~V~ 165 (190)
. .......+.++++.
T Consensus 410 ~~~~~~~~p~~~~~~~ 425 (852)
T TIGR03345 410 VALSQNATPAALEDLR 425 (852)
T ss_pred HHHhccCCchhHHHHH
Confidence 2 22233345555554
No 111
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.07 E-value=5.9e-09 Score=88.33 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=102.0
Q ss_pred cccCCeEEEEecCCCCC-HHHHHHHHHHhhccCCC-EEEEEecCCcccccCCCCCCCCCCCChhHh--hhhhheeccCCC
Q psy18185 26 AELVPGVLFIDEVHMLD-LETFTYLHRALESAIAP-IVIFATNRGRCLVRGTDDIISPHGIPLDLL--DRLLIIRTTPYN 101 (190)
Q Consensus 26 ~~~~~~Il~IDEi~~L~-~~~~~~L~~~~E~~~~~-~iIlatn~~~~~~~~t~~~~~~~~l~~~l~--SR~~~i~~~~ls 101 (190)
....+++++|+++|.+. +...+.|.+.+++++.. .+|+.++. .+ ....+...+. ++|.++.+++++
T Consensus 43 lf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~-------~~---~~~~~~k~~~~~~~~~~i~~~~~~ 112 (302)
T TIGR01128 43 LFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPK-------LD---KRKKLTKWLKALKNAQIVECKTPK 112 (302)
T ss_pred cccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCC-------CC---HhHHHHHHHHHhcCeeEEEecCCC
Confidence 33456899999999986 46789999999997663 45555521 10 1111112233 499999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
..++..++...+++.|+.++++++++++.. .+||++.+.+-|+....++. .+.||.++|...+.
T Consensus 113 ~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~-~~~d~~~l~~el~KL~~~~~---~~~It~e~I~~~~~ 176 (302)
T TIGR01128 113 EQELPRWIQARLKKLGLRIDPDAVQLLAEL-VEGNLLAIAQELEKLALYAP---DGKITLEDVEEAVS 176 (302)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hCcHHHHHHHHHHHHHhhCC---CCCCCHHHHHHHHh
Confidence 999999999999999999999999999999 69999999999999887753 33699999998775
No 112
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.03 E-value=2e-08 Score=83.72 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccC--C--CEEEEEecCCcccccCCCCCCCCCC----
Q psy18185 12 EINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAI--A--PIVIFATNRGRCLVRGTDDIISPHG---- 83 (190)
Q Consensus 12 ~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~--~--~~iIlatn~~~~~~~~t~~~~~~~~---- 83 (190)
++.+.+......++ ..+++|||+|.++.++.+.|..+.+... . ..+++++. ... ...
T Consensus 110 ~l~~~l~~~~~~~~----~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~---------~~~--~~~l~~~ 174 (269)
T TIGR03015 110 ELEDFLIEQFAAGK----RALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ---------PEF--RETLQSP 174 (269)
T ss_pred HHHHHHHHHHhCCC----CeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC---------HHH--HHHHcCc
Confidence 44444444333333 3699999999999888887766655321 1 23455552 110 000
Q ss_pred CChhHhhhh-hheeccCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCc
Q psy18185 84 IPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEG----HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTA 158 (190)
Q Consensus 84 l~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~~~----~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~ 158 (190)
-..++.+|+ ..+.++|++.+|+.+.+..++...| ..+++++++.|.+. +.|++|....+++.+...|-..+...
T Consensus 175 ~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~-s~G~p~~i~~l~~~~~~~a~~~~~~~ 253 (269)
T TIGR03015 175 QLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF-SRGIPRLINILCDRLLLSAFLEEKRE 253 (269)
T ss_pred hhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH-cCCcccHHHHHHHHHHHHHHHcCCCC
Confidence 123588884 6789999999999999998887544 46999999999999 79999997777777777776678889
Q ss_pred ccHHHHHHHHHh
Q psy18185 159 ISKQDILEVSTL 170 (190)
Q Consensus 159 It~~~V~~~~~~ 170 (190)
||.++|+.++.-
T Consensus 254 i~~~~v~~~~~~ 265 (269)
T TIGR03015 254 IGGEEVREVIAE 265 (269)
T ss_pred CCHHHHHHHHHH
Confidence 999999998864
No 113
>KOG2227|consensus
Probab=98.96 E-value=2.7e-09 Score=95.68 Aligned_cols=149 Identities=19% Similarity=0.155 Sum_probs=105.7
Q ss_pred HHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCC----EEEEEecCCcccccCCCCCCCCCCCChhHh
Q psy18185 14 NKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAP----IVIFATNRGRCLVRGTDDIISPHGIPLDLL 89 (190)
Q Consensus 14 ~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~----~iIlatn~~~~~~~~t~~~~~~~~l~~~l~ 89 (190)
.+++..+....+. .-|+++||.|+|....+..|+.+.|++..| ++|+.+|.. + --.+..|.|.
T Consensus 244 ~~~~~~h~~q~k~---~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl-------D---lTdR~LprL~ 310 (529)
T KOG2227|consen 244 LEKFEKHTKQSKF---MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL-------D---LTDRFLPRLN 310 (529)
T ss_pred HHHHHHHHhcccc---eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhh-------h---HHHHHhhhhh
Confidence 3444444444331 258889999999999999999999997763 455566521 1 1223345566
Q ss_pred hhh----hheeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhhcCC------
Q psy18185 90 DRL----LIIRTTPYNQKDMEAIIKLRANTEGHV-LDDEALVTLSEI--GTRSTLRYVVQLLTPAALTAKTNGR------ 156 (190)
Q Consensus 90 SR~----~~i~~~~ls~~ei~~iL~~~~~~~~~~-i~~e~l~~i~~~--a~~gdlR~ai~lL~~~~~~a~~~g~------ 156 (190)
.|| ..+.|+|||.+||..||+.+...+... +-+.+++.+|+. |..||+|.|+.++..|..+++.+++
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~ 390 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDP 390 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 654 578999999999999999999876443 345588988887 3579999999999999888876544
Q ss_pred ----------CcccHHHHHHHHHhccChH
Q psy18185 157 ----------TAISKQDILEVSTLFLDAK 175 (190)
Q Consensus 157 ----------~~It~~~V~~~~~~f~~~~ 175 (190)
+.|.+.+|..+++-+....
T Consensus 391 l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 391 LSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred CCCCCCcccccccchHHHHHHhhhhccCh
Confidence 2355777777775544443
No 114
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.86 E-value=6.1e-08 Score=84.77 Aligned_cols=130 Identities=23% Similarity=0.275 Sum_probs=97.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-heec
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRT 97 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-~i~~ 97 (190)
|+|+|||+|.|+...|+.|+.+++++. ...+++++ +.|+. -..+++++.+|+. .+.+
T Consensus 133 GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~ivia---------t~np~-eg~l~~~LldRf~l~i~l 202 (337)
T TIGR02030 133 GILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVG---------SGNPE-EGELRPQLLDRFGLHAEI 202 (337)
T ss_pred CEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEe---------ccccc-cCCCCHHHHhhcceEEEC
Confidence 899999999999999999999998752 12244444 22331 3468899999984 5667
Q ss_pred cCCCH-HHHHHHHHHHHH-----------------------------hcCCCCCHHHHHHHHHhcC--CC-CHHHHHHHH
Q psy18185 98 TPYNQ-KDMEAIIKLRAN-----------------------------TEGHVLDDEALVTLSEIGT--RS-TLRYVVQLL 144 (190)
Q Consensus 98 ~~ls~-~ei~~iL~~~~~-----------------------------~~~~~i~~e~l~~i~~~a~--~g-dlR~ai~lL 144 (190)
.++++ ++-.++++++.. -.++.++++++++++..+. +. +.|-.+.++
T Consensus 203 ~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~ 282 (337)
T TIGR02030 203 RTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLN 282 (337)
T ss_pred CCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 66665 555556655211 1467899999999998741 22 689999999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 145 TPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 145 ~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
..|..+|-.+|+..|+.+||+.++.+
T Consensus 283 raArA~Aal~GR~~V~~dDv~~~a~~ 308 (337)
T TIGR02030 283 RAAKALAAFEGRTEVTVDDIRRVAVL 308 (337)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99998888899999999999998855
No 115
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.78 E-value=7.6e-08 Score=92.06 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=96.0
Q ss_pred CeEEEEecCCCCC---------HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCC
Q psy18185 30 PGVLFIDEVHMLD---------LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~---------~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~l 100 (190)
.+||||||+|.|. .+..+.|..+++.+ ...+|++|+ .+.+.......++|.+|++.+.++++
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt--------~~E~~~~~~~D~AL~rRFq~I~v~eP 349 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTT--------YQEFSNIFEKDRALARRFQKIDITEP 349 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCC--------hHHHHHHhhccHHHHhhCcEEEeCCC
Confidence 4799999999981 35667788888775 467888884 11111123567899999999999999
Q ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhh----hcCCCcccHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGTR-----STLRYVVQLLTPAALTAK----TNGRTAISKQDILEV 167 (190)
Q Consensus 101 s~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~-----gdlR~ai~lL~~~~~~a~----~~g~~~It~~~V~~~ 167 (190)
+.++...+|+..... .++.++++++..++..+.+ .=+.+|+.+|+.++.... ......|+.++|.++
T Consensus 350 s~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v 429 (758)
T PRK11034 350 SIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESV 429 (758)
T ss_pred CHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHH
Confidence 999999999976543 5889999999998887322 245699999998874321 122345888888887
Q ss_pred HH
Q psy18185 168 ST 169 (190)
Q Consensus 168 ~~ 169 (190)
+.
T Consensus 430 ~~ 431 (758)
T PRK11034 430 VA 431 (758)
T ss_pred HH
Confidence 63
No 116
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.71 E-value=4.1e-07 Score=79.54 Aligned_cols=129 Identities=20% Similarity=0.242 Sum_probs=95.6
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-heec
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRT 97 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-~i~~ 97 (190)
|+|+|||++.++...|+.|+..+|++. +..|++++ +.|+. -..+++++.+|+. .+.+
T Consensus 130 GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA---------t~NP~-e~~l~~aLldRF~~~v~v 199 (334)
T PRK13407 130 GYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG---------SGNPE-EGELRPQLLDRFGLSVEV 199 (334)
T ss_pred CeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe---------cCCcc-cCCCCHHHHhhcceEEEc
Confidence 799999999999999999999998753 12244444 22321 2357889999984 5666
Q ss_pred cCCCH-HHHHHHHHHHH-----------------------------HhcCCCCCHHHHHHHHHhc---CCCCHHHHHHHH
Q psy18185 98 TPYNQ-KDMEAIIKLRA-----------------------------NTEGHVLDDEALVTLSEIG---TRSTLRYVVQLL 144 (190)
Q Consensus 98 ~~ls~-~ei~~iL~~~~-----------------------------~~~~~~i~~e~l~~i~~~a---~~gdlR~ai~lL 144 (190)
.+.++ ++-.+++.+.. .-.++.++++++.++++.+ ...+.|-.+.++
T Consensus 200 ~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ 279 (334)
T PRK13407 200 RSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLL 279 (334)
T ss_pred CCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 66655 55455554421 1146789999999999984 124789999989
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 145 TPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 145 ~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
..|..+|-.+|+..||.++|+.+..
T Consensus 280 ~aA~a~A~l~Gr~~V~~~Di~~~~~ 304 (334)
T PRK13407 280 RAARALAAFEGAEAVGRSHLRSVAT 304 (334)
T ss_pred HHHHHHHHHcCCCeeCHHHHHHHHH
Confidence 8888889899999999999988774
No 117
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.67 E-value=1.9e-07 Score=89.73 Aligned_cols=126 Identities=17% Similarity=0.276 Sum_probs=86.9
Q ss_pred CeEEEEecCCCCCHHH----HHHHHHHhhcc----------------CCCEEEEEecCCcccccCCCCCCCCCCCChhHh
Q psy18185 30 PGVLFIDEVHMLDLET----FTYLHRALESA----------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLL 89 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~----~~~L~~~~E~~----------------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~ 89 (190)
..|++|||+|.+++.. +++|+.+++.. +.+.||+ | + | +..+|++|+
T Consensus 417 ~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~-T---------a-N---~~~i~~aLl 482 (784)
T PRK10787 417 NPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA-T---------S-N---SMNIPAPLL 482 (784)
T ss_pred CCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE-c---------C-C---CCCCCHHHh
Confidence 3699999999998764 69999999852 1133444 4 2 2 346999999
Q ss_pred hhhhheeccCCCHHHHHHHHHHHHHh----------cCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH--hh--hc
Q psy18185 90 DRLLIIRTTPYNQKDMEAIIKLRANT----------EGHVLDDEALVTLSEIGT-RSTLRYVVQLLTPAALT--AK--TN 154 (190)
Q Consensus 90 SR~~~i~~~~ls~~ei~~iL~~~~~~----------~~~~i~~e~l~~i~~~a~-~gdlR~ai~lL~~~~~~--a~--~~ 154 (190)
+||.++.|.+|+.+++.+|.++.... ..+.++++++.+|++.+. +.++|..-..++..... +. ..
T Consensus 483 ~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~ 562 (784)
T PRK10787 483 DRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLD 562 (784)
T ss_pred cceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998777631 246799999999997631 23455544444443321 11 11
Q ss_pred CC---CcccHHHHHHHHH
Q psy18185 155 GR---TAISKQDILEVST 169 (190)
Q Consensus 155 g~---~~It~~~V~~~~~ 169 (190)
+. -.||.+++.+.++
T Consensus 563 ~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 563 KSLKHIEINGDNLHDYLG 580 (784)
T ss_pred CCCceeeecHHHHHHHhC
Confidence 22 2588888888774
No 118
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.67 E-value=6.8e-07 Score=75.72 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=100.0
Q ss_pred CCeEEEEecCCCCCH------------HHHHHHHHHhhc---cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-
Q psy18185 29 VPGVLFIDEVHMLDL------------ETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL- 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~------------~~~~~L~~~~E~---~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~- 92 (190)
.+-|+||||.|.+.. +..|+|+.-++. ..+++.|.+|| .|..+.+++|||+
T Consensus 210 aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN-------------~p~~LD~aiRsRFE 276 (368)
T COG1223 210 APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN-------------RPELLDPAIRSRFE 276 (368)
T ss_pred CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC-------------ChhhcCHHHHhhhh
Confidence 468999999999842 677888877764 23367788886 3788999999999
Q ss_pred hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHH-HHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVV-QLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai-~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
..|+|.-++++|...+|...+++..+.++-+ +++++..+ .| +-|... ..|..|..-|..+++..|+-+++.++++.
T Consensus 277 eEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t-~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 277 EEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKT-KGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred heeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHh-CCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 4799999999999999999999988888777 77888774 33 334433 35666667777889999999999999864
No 119
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.65 E-value=1e-06 Score=75.95 Aligned_cols=127 Identities=19% Similarity=0.220 Sum_probs=92.7
Q ss_pred CCeEEEEecCCCCCHH----HHHHHHHHhhccCC-C--EEEEEecCCcccccCCCCCCCCCCC---ChhHhhhhhheecc
Q psy18185 29 VPGVLFIDEVHMLDLE----TFTYLHRALESAIA-P--IVIFATNRGRCLVRGTDDIISPHGI---PLDLLDRLLIIRTT 98 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~----~~~~L~~~~E~~~~-~--~iIlatn~~~~~~~~t~~~~~~~~l---~~~l~SR~~~i~~~ 98 (190)
.+++++|++++.+... ....|...+ ++++ + ++++.++. .+ ....+ -..+.++|.++.++
T Consensus 76 ~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~-------~~---~~~k~~k~~k~~~~~~~~~~~~ 144 (340)
T PRK05574 76 DRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPK-------LD---KAKKKSAWFKALKKKAVVVEAQ 144 (340)
T ss_pred cCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCc-------CC---HHHHhhHHHHHHHhCceEEEcC
Confidence 4689999999999654 223333333 3232 2 23333321 00 01122 34677889999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+++..++..++...++..|+.+++++++++++. .+||++.+.+-++....++. ...||.++|..++.-
T Consensus 145 ~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~-~~~d~~~l~~El~KL~l~~~---~~~It~~~I~~~i~~ 212 (340)
T PRK05574 145 PPKEAELPQWIQQRLKQQGLQIDAAALQLLAER-VEGNLLALAQELEKLALLYP---DGKITLEDVEEAVPD 212 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hCchHHHHHHHHHHHHhhcC---CCCCCHHHHHHHHhh
Confidence 999999999999999999999999999999999 69999999999999887652 223999999987643
No 120
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.64 E-value=1.1e-06 Score=77.22 Aligned_cols=131 Identities=24% Similarity=0.286 Sum_probs=97.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hhee
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIR 96 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~ 96 (190)
.|+|+|||++.|++..|+.|+.+++++. +..|++++ |.|+. ...+++++.+|+ ..+.
T Consensus 145 ~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfivia---------T~np~-eg~l~~~LldRf~l~i~ 214 (350)
T CHL00081 145 RGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVG---------SGNPE-EGELRPQLLDRFGMHAE 214 (350)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEe---------ccCcc-cCCCCHHHHHHhCceee
Confidence 4899999999999999999999998632 12355555 23432 345889999997 4567
Q ss_pred ccCCCH-HHHHHHHHHHH-----------------------------HhcCCCCCHHHHHHHHHhcC--C-CCHHHHHHH
Q psy18185 97 TTPYNQ-KDMEAIIKLRA-----------------------------NTEGHVLDDEALVTLSEIGT--R-STLRYVVQL 143 (190)
Q Consensus 97 ~~~ls~-~ei~~iL~~~~-----------------------------~~~~~~i~~e~l~~i~~~a~--~-gdlR~ai~l 143 (190)
+..++. ++-.++|++.. .-.++.++++.+.++++.+. + .+.|-.+.+
T Consensus 215 l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l 294 (350)
T CHL00081 215 IRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVT 294 (350)
T ss_pred cCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHH
Confidence 776663 44444554421 12468899999999999841 2 378999999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 144 LTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 144 L~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+..|..+|-.+|+..|+.+||+.++..
T Consensus 295 ~raArA~Aal~GR~~V~pdDv~~~a~~ 321 (350)
T CHL00081 295 NRAAKALAAFEGRTEVTPKDIFKVITL 321 (350)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999988888899999999999998854
No 121
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=98.64 E-value=7.6e-07 Score=76.74 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=97.6
Q ss_pred cCCeEEEEecCCCC---CHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCC---
Q psy18185 28 LVPGVLFIDEVHML---DLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY--- 100 (190)
Q Consensus 28 ~~~~Il~IDEi~~L---~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~l--- 100 (190)
..++++++++++.+ .++..+.|...++.+++ .++|+++. +.+-.-......+...+.+..|.++
T Consensus 60 ~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~---------~~~d~r~k~~k~l~k~~~~~~~~~~~~~ 130 (326)
T PRK07452 60 SGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNT---------KKPDGRLKSTKLLQKLAEEKEFSLIPPW 130 (326)
T ss_pred CCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeC---------CCcchHHHHHHHHHHceeEEEecCCCcc
Confidence 35689999998765 56788899999998665 45555441 1000001223456666777676554
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+.+++..+++.++++.|+.++++++++++.. .++|++.+.+-|+....++. .++..||.++|..+..
T Consensus 131 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~-~g~dl~~l~~EleKL~ly~~-~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 131 DTEGLKQLVERTAQELGVKLTPEAAELLAEA-VGNDSRRLYNELEKLALYAE-NSTKPISAEEVKALVS 197 (326)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hCccHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhc
Confidence 5678999999999999999999999999999 69999999999999887632 1244799999998864
No 122
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.63 E-value=1.5e-07 Score=90.37 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=75.5
Q ss_pred eEEEEecCCCCCHH----HHHHHHHHhhcc----------------CCCEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 31 GVLFIDEVHMLDLE----TFTYLHRALESA----------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 31 ~Il~IDEi~~L~~~----~~~~L~~~~E~~----------------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.|++|||+|.+++. ..++|+.+++.. ..+.||++|| ++..++++|++
T Consensus 416 ~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN-------------~~~~i~~~L~~ 482 (775)
T TIGR00763 416 PLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATAN-------------SIDTIPRPLLD 482 (775)
T ss_pred CEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecC-------------CchhCCHHHhC
Confidence 59999999999763 358888888731 1234555554 36789999999
Q ss_pred hhhheeccCCCHHHHHHHHHHHH-----Hh-----cCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q psy18185 91 RLLIIRTTPYNQKDMEAIIKLRA-----NT-----EGHVLDDEALVTLSEIGT-RSTLRYVVQLLTPA 147 (190)
Q Consensus 91 R~~~i~~~~ls~~ei~~iL~~~~-----~~-----~~~~i~~e~l~~i~~~a~-~gdlR~ai~lL~~~ 147 (190)
||.++.|++|+.++...++++.. +. +++.++++++.+|++..+ +.++|..-..++..
T Consensus 483 R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 483 RMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKI 550 (775)
T ss_pred CeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHH
Confidence 99999999999999999987654 11 356899999999998632 23555544444433
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=98.62 E-value=1.3e-06 Score=82.32 Aligned_cols=126 Identities=22% Similarity=0.213 Sum_probs=92.8
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHh---hcc---CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRAL---ESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~---E~~---~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
+.||||||+|.+. .+.+..|+.++ +.. .++.+|++|| .|..+++++++++
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN-------------~~~~LD~ALlRpG 342 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATN-------------RVDILDAALLRPG 342 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecC-------------chHhhhhhhhccc
Confidence 5799999999983 23344455554 321 1245666664 2667888888754
Q ss_pred ---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 93 ---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 93 ---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
..+.|++++.++...+|+..+++..+ .++..+..++..+ .| +.+..-+++..++..+.+.+...||.+++.+++
T Consensus 343 RFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t-~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai 420 (638)
T CHL00176 343 RFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRT-PGFSGADLANLLNEAAILTARRKKATITMKEIDTAI 420 (638)
T ss_pred cCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 67899999999999999999877543 4456688888884 55 777777888888777777788899999999988
Q ss_pred Hh
Q psy18185 169 TL 170 (190)
Q Consensus 169 ~~ 170 (190)
.-
T Consensus 421 ~r 422 (638)
T CHL00176 421 DR 422 (638)
T ss_pred HH
Confidence 54
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.61 E-value=3e-07 Score=89.09 Aligned_cols=128 Identities=22% Similarity=0.210 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHcCccccCCeEEEEecCCCCCH--------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCC
Q psy18185 10 RKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL--------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISP 81 (190)
Q Consensus 10 R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~--------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~ 81 (190)
.+.+.+++......+ .+.||||||+|.|.. ++++.|...++.+ ...+|++|+ .+.+...
T Consensus 251 e~~l~~~l~~~~~~~----~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt--------~~e~r~~ 317 (852)
T TIGR03346 251 EERLKAVLNEVTKSE----GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATT--------LDEYRKY 317 (852)
T ss_pred HHHHHHHHHHHHhcC----CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCc--------HHHHHHH
Confidence 334555555432222 247999999999952 5778888888765 477888884 2111111
Q ss_pred CCCChhHhhhhhheeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHH
Q psy18185 82 HGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGTR--ST---LRYVVQLLTPAALT 150 (190)
Q Consensus 82 ~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~--gd---lR~ai~lL~~~~~~ 150 (190)
....+++.+||+.+.+++++.++...+|+..... .++.++++++..++..+.+ .| +.+|+.+|+.|+..
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHH
Confidence 4568899999999999999999999999876543 4778999999999988422 24 78999999998753
No 125
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.58 E-value=7.5e-07 Score=83.10 Aligned_cols=134 Identities=25% Similarity=0.255 Sum_probs=101.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCC------------EEEEEecCCcccccCCCCCC-CCCCCChhHhhhh-hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAP------------IVIFATNRGRCLVRGTDDII-SPHGIPLDLLDRL-LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~------------~iIlatn~~~~~~~~t~~~~-~~~~l~~~l~SR~-~~i 95 (190)
.|||||||+..+++..++.|+..+|++... .|+++. |+++. .-..+++.+++|+ +.+
T Consensus 94 ~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIa---------t~~~~~~~~~L~~~lLDRf~l~v 164 (584)
T PRK13406 94 GGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVA---------LDEGAEEDERAPAALADRLAFHL 164 (584)
T ss_pred CCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEe---------cCCChhcccCCCHHhHhheEEEE
Confidence 489999999999999999999999986321 244444 32221 1256888999998 567
Q ss_pred eccCCCHHHHH-------HHHHHHHHhcCCCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 96 RTTPYNQKDME-------AIIKLRANTEGHVLDDEALVTLSEIGTRS---TLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 96 ~~~~ls~~ei~-------~iL~~~~~~~~~~i~~e~l~~i~~~a~~g---dlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.+.+++..+.. +++..+..-.++.++++.+++++..+... +.|-.+.++..|..+|-.+|+..|+.++|.
T Consensus 165 ~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 165 DLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred EcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 88877766542 34444433358899999999998875332 669999999999888888999999999999
Q ss_pred HHHHhcc
Q psy18185 166 EVSTLFL 172 (190)
Q Consensus 166 ~~~~~f~ 172 (190)
+++.+.+
T Consensus 245 ~Aa~lvL 251 (584)
T PRK13406 245 LAARLVL 251 (584)
T ss_pred HHHHHHH
Confidence 9987643
No 126
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.58 E-value=1.2e-06 Score=77.99 Aligned_cols=128 Identities=23% Similarity=0.256 Sum_probs=91.6
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhcc------CCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALESA------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+. .+.+..++.++..- ..+.+|++|| .+..++++++.
T Consensus 225 p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn-------------~~~~ld~allRpg 291 (389)
T PRK03992 225 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN-------------RIDILDPAILRPG 291 (389)
T ss_pred CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecC-------------ChhhCCHHHcCCc
Confidence 5799999999982 45566666666421 1245666665 26678888875
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|+ ..+.|++++.++..++++..+....+.- +--+..++..+.+-+.+..-.++..|+..|.+++...||.+++.+++.
T Consensus 292 Rfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~ 370 (389)
T PRK03992 292 RFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIE 370 (389)
T ss_pred cCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 55 5789999999999999998876544321 123666777743335566666788888888888888999999999986
Q ss_pred hc
Q psy18185 170 LF 171 (190)
Q Consensus 170 ~f 171 (190)
..
T Consensus 371 ~~ 372 (389)
T PRK03992 371 KV 372 (389)
T ss_pred HH
Confidence 54
No 127
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.57 E-value=1.6e-06 Score=73.05 Aligned_cols=122 Identities=21% Similarity=0.241 Sum_probs=88.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccC-----------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAI-----------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL 93 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~-----------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~ 93 (190)
++++|||+|.++++.++.|+.++|++. ...+|+++|. ..+..-..++.++++||.
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~--------~~~~g~~~l~~aL~~R~~ 178 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP--------VEYAGVHETQDALLDRLI 178 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC--------ccccceecccHHHHhhcE
Confidence 699999999999999999999998632 1245666651 111011245788999999
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-----C----CCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG-----T----RSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a-----~----~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
.+.+..++.++...+++.+. .++++.++.+.+.+ . .-++|.++.+...+..+ .+...++.+++
T Consensus 179 ~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~---~~~~~~~~~~~ 250 (262)
T TIGR02640 179 TIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ---DIPVDVDDEDF 250 (262)
T ss_pred EEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc---CCCCCCCcHHH
Confidence 99999999999999998764 36778888877773 0 12478888777776654 34567888888
Q ss_pred HHHH
Q psy18185 165 LEVS 168 (190)
Q Consensus 165 ~~~~ 168 (190)
++++
T Consensus 251 ~~~~ 254 (262)
T TIGR02640 251 VDLC 254 (262)
T ss_pred HHHH
Confidence 8766
No 128
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.56 E-value=2.5e-06 Score=77.96 Aligned_cols=128 Identities=27% Similarity=0.302 Sum_probs=89.6
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhccC---CCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~---~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+.. ...+.|+..++... ...+|++|| .|..+++.+++
T Consensus 148 p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn-------------~~~~ld~al~r~g 214 (495)
T TIGR01241 148 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATN-------------RPDVLDPALLRPG 214 (495)
T ss_pred CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecC-------------ChhhcCHHHhcCC
Confidence 57999999999843 23344555554321 244555564 37889999987
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|+ ..+.++.++.++..++++..+...+.. ++..+..++..+..-+.+..-+++..+...+.+++...||.+++.+++.
T Consensus 215 Rfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 215 RFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred cceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 44 468999999999999999887665433 3444678888842225566666777777677677788899999999886
Q ss_pred hc
Q psy18185 170 LF 171 (190)
Q Consensus 170 ~f 171 (190)
..
T Consensus 294 ~~ 295 (495)
T TIGR01241 294 RV 295 (495)
T ss_pred HH
Confidence 43
No 129
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.54 E-value=1.7e-06 Score=81.47 Aligned_cols=132 Identities=24% Similarity=0.336 Sum_probs=94.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i 95 (190)
.|+|||||+|.|+...|+.|+.++|++.. ...+++| + |+ ....++++|++|+ ..+
T Consensus 127 ~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat---------~-np-~eg~l~~~L~dR~~l~i 195 (633)
T TIGR02442 127 RGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGT---------M-NP-EEGDLRPQLLDRFGLCV 195 (633)
T ss_pred CCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEe---------c-CC-CCCCCCHHHHhhcceEE
Confidence 47999999999999999999999997620 1223333 2 32 1346788999998 345
Q ss_pred eccCCC-HHHHHHHHHHHH-----------------------------HhcCCCCCHHHHHHHHHhcCC---CCHHHHHH
Q psy18185 96 RTTPYN-QKDMEAIIKLRA-----------------------------NTEGHVLDDEALVTLSEIGTR---STLRYVVQ 142 (190)
Q Consensus 96 ~~~~ls-~~ei~~iL~~~~-----------------------------~~~~~~i~~e~l~~i~~~a~~---gdlR~ai~ 142 (190)
.+.+.. .++..+++.++. ....+.++++++++++..+.. .++|-.+.
T Consensus 196 ~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~ 275 (633)
T TIGR02442 196 DVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIV 275 (633)
T ss_pred EccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHH
Confidence 665554 344334443211 113578999999999998522 25888899
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 143 LLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 143 lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
++..|..+|-.+|+..|+.+||++++.+.+
T Consensus 276 ~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 276 MARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 998888888889999999999999997654
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.54 E-value=5.4e-07 Score=87.34 Aligned_cols=118 Identities=16% Similarity=0.337 Sum_probs=89.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccc----cCCCCCCCC-----------
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLV----RGTDDIISP----------- 81 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~----~~t~~~~~~----------- 81 (190)
++.||++||++.++++.++.|+.+++++. .+++|++||.+...+ .+.+....+
T Consensus 668 p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (852)
T TIGR03345 668 PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPEL 747 (852)
T ss_pred CCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHH
Confidence 45899999999999999999999999763 267899998653211 011000000
Q ss_pred -CCCChhHhhhhhheeccCCCHHHHHHHHHHHHHh-------c-C--CCCCHHHHHHHHHhcCCC---CHHHHHHHHHHH
Q psy18185 82 -HGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANT-------E-G--HVLDDEALVTLSEIGTRS---TLRYVVQLLTPA 147 (190)
Q Consensus 82 -~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~-------~-~--~~i~~e~l~~i~~~a~~g---dlR~ai~lL~~~ 147 (190)
..++|+|++||.+|.|+|++.+++.+|+...... . | +.++++++++|++.+ .+ ++|.+.+.++..
T Consensus 748 ~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g-~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 748 LKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARC-TEVESGARNIDAILNQT 826 (852)
T ss_pred HHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHc-CCCCCChHHHHHHHHHH
Confidence 1257899999999999999999999999876542 1 4 578999999999995 44 899988888764
No 131
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.4e-06 Score=74.96 Aligned_cols=124 Identities=23% Similarity=0.310 Sum_probs=93.5
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhccCC------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALESAIA------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~~~------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
+.|+||||+|.+. .+.|..++.++.+-.+ +.+|+|||+ |..+.|+|+.-.
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR-------------~D~LDPALLRPG 311 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR-------------PDILDPALLRPG 311 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC-------------ccccChhhcCCC
Confidence 5899999999993 4788888888874222 679999984 667888888765
Q ss_pred ---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhc---CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 93 ---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIG---TRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 93 ---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a---~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
..|+|+.++.+.-..|++.++.+.++ ++++ ++.|++.+ +..|++ .++..|+-+|.++.+..||.++..
T Consensus 312 R~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sGAdlk---aictEAGm~AiR~~R~~Vt~~DF~ 386 (406)
T COG1222 312 RFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSGADLK---AICTEAGMFAIRERRDEVTMEDFL 386 (406)
T ss_pred cccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCchHHHH---HHHHHHhHHHHHhccCeecHHHHH
Confidence 57999999999999999999887644 2222 55566663 222444 457888888999999999999888
Q ss_pred HHHHhc
Q psy18185 166 EVSTLF 171 (190)
Q Consensus 166 ~~~~~f 171 (190)
++..-.
T Consensus 387 ~Av~KV 392 (406)
T COG1222 387 KAVEKV 392 (406)
T ss_pred HHHHHH
Confidence 877543
No 132
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.53 E-value=3.8e-07 Score=88.07 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCH--------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCC
Q psy18185 8 KLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL--------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDII 79 (190)
Q Consensus 8 ~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~--------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~ 79 (190)
+..+.+.+++.+.... .+.||||||+|.|.. ++.+.|...++.+ ...+|++|+ .+.+.
T Consensus 255 e~e~rl~~i~~~~~~~-----~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt--------~~ey~ 320 (821)
T CHL00095 255 EFEERLKRIFDEIQEN-----NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATT--------LDEYR 320 (821)
T ss_pred HHHHHHHHHHHHHHhc-----CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCC--------HHHHH
Confidence 4455666666654322 236999999998843 4678888888875 477888884 11111
Q ss_pred CCCCCChhHhhhhhheeccCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhcCCC---C---HHHHHHHHHHHHH
Q psy18185 80 SPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRAN----TEGHVLDDEALVTLSEIGTRS---T---LRYVVQLLTPAAL 149 (190)
Q Consensus 80 ~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~----~~~~~i~~e~l~~i~~~a~~g---d---lR~ai~lL~~~~~ 149 (190)
......+.+.+||+.+.+++++.++...+++.... ..++.++++++..++..+ .| | ++.|+.+|+.++.
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls-~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS-DQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCccccCchHHHHHHHHHHH
Confidence 11335678999999999999999999988876543 256779999999999994 42 3 7899999998875
Q ss_pred H
Q psy18185 150 T 150 (190)
Q Consensus 150 ~ 150 (190)
.
T Consensus 400 ~ 400 (821)
T CHL00095 400 R 400 (821)
T ss_pred H
Confidence 3
No 133
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.52 E-value=4e-06 Score=77.03 Aligned_cols=143 Identities=21% Similarity=0.177 Sum_probs=93.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC--------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LI 94 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~--------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~ 94 (190)
.|+++|||++.++...|..|+.++|.+. ...+|.++|-..-+-.++.....-..+|++++||+ ++
T Consensus 301 ~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi 380 (509)
T smart00350 301 NGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLL 380 (509)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeE
Confidence 4899999999999999999999998743 13456666521000000000000015889999998 54
Q ss_pred eec-cCCCHHHHHHHHHHH------------------------------HHh-cCCCCCHHHHHHHHHhc----C-----
Q psy18185 95 IRT-TPYNQKDMEAIIKLR------------------------------ANT-EGHVLDDEALVTLSEIG----T----- 133 (190)
Q Consensus 95 i~~-~~ls~~ei~~iL~~~------------------------------~~~-~~~~i~~e~l~~i~~~a----~----- 133 (190)
+.+ .+++.+.-..++... |+. -...+++++.++|.+.. .
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~ 460 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQS 460 (509)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccc
Confidence 433 344443333333221 111 12368999999988762 1
Q ss_pred ------CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 134 ------RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 134 ------~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
.-++|....++..+-.+|.-.++..|+.+||.++..+|.
T Consensus 461 ~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 461 EARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred ccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 116788888888888889889999999999999998874
No 134
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.51 E-value=1.9e-06 Score=75.69 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=87.7
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhc------cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALES------AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~------~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+. .+.+..+..++.. ...+.+|++|| .+..++++++.
T Consensus 216 p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn-------------~~~~ld~al~r~g 282 (364)
T TIGR01242 216 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN-------------RPDILDPALLRPG 282 (364)
T ss_pred CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC-------------ChhhCChhhcCcc
Confidence 5799999999983 3445555555532 12245666664 26678888875
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDD-EALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~-e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
|+ ..+.|++++.++..++++..+...++ ++ --...++..+.+-+.+..-.++..|+..|.+.++..||.+++..++
T Consensus 283 rfd~~i~v~~P~~~~r~~Il~~~~~~~~l--~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~ 360 (364)
T TIGR01242 283 RFDRIIEVPLPDFEGRLEILKIHTRKMKL--AEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAV 360 (364)
T ss_pred cCceEEEeCCcCHHHHHHHHHHHHhcCCC--CccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 54 57899999999999999987755432 22 2356677774222445555667788888888888899999999887
Q ss_pred Hh
Q psy18185 169 TL 170 (190)
Q Consensus 169 ~~ 170 (190)
..
T Consensus 361 ~~ 362 (364)
T TIGR01242 361 EK 362 (364)
T ss_pred HH
Confidence 54
No 135
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.47 E-value=3.7e-06 Score=78.63 Aligned_cols=133 Identities=26% Similarity=0.306 Sum_probs=94.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-------------CCEEEEEecCCcccccCCCCCC-CCCCCChhHhhhhhh-
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-------------APIVIFATNRGRCLVRGTDDII-SPHGIPLDLLDRLLI- 94 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-------------~~~iIlatn~~~~~~~~t~~~~-~~~~l~~~l~SR~~~- 94 (190)
.|+|||||++.|++..|+.|+.+++++. ....+++| + |+. .-..+++++.+|+.+
T Consensus 85 ~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt---------~-np~e~~g~L~~~LldRf~l~ 154 (589)
T TIGR02031 85 RGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIAT---------Y-DPAEGGGGLPDHLLDRLALH 154 (589)
T ss_pred CCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEe---------c-CCccccCCCCHHHHHhccCe
Confidence 3799999999999999999999998753 11233344 2 221 114688999999843
Q ss_pred eeccC-CCHHHHHHHHHHHH-----------------------HhcCCCCCHHHHHHHHHhcCC---CCHHHHHHHHHHH
Q psy18185 95 IRTTP-YNQKDMEAIIKLRA-----------------------NTEGHVLDDEALVTLSEIGTR---STLRYVVQLLTPA 147 (190)
Q Consensus 95 i~~~~-ls~~ei~~iL~~~~-----------------------~~~~~~i~~e~l~~i~~~a~~---gdlR~ai~lL~~~ 147 (190)
+.+.. .+.++-.+++++.. ....+.++++++++|+..+.. .++|-.+.++..|
T Consensus 155 v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~A 234 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAA 234 (589)
T ss_pred eecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 33332 33333334443321 125788999999999998522 2589999999888
Q ss_pred HHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 148 ALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 148 ~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
..+|-.+|+..|+.+||+.++.+.+
T Consensus 235 rA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 235 KAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 8888889999999999999997644
No 136
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.45 E-value=4.8e-06 Score=74.44 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=92.0
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhh---cc---CCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALE---SA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E---~~---~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+. .+.+..+..++. .. ..+.+|++|| .|..++++++.
T Consensus 239 P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN-------------~~d~LDpAllR~G 305 (398)
T PTZ00454 239 PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN-------------RADTLDPALLRPG 305 (398)
T ss_pred CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC-------------CchhCCHHHcCCC
Confidence 5799999999873 234444544443 21 1245777775 37789998876
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|+ ..+.|++++.++...+++....+.++.-+- -+..++..+.+-+....-+++..|...|.++++..|+.+++.+++.
T Consensus 306 Rfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv-d~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~ 384 (398)
T PTZ00454 306 RLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV-DLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYK 384 (398)
T ss_pred cccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 55 468999999999999999887766543222 3566777743446777778899998888888888999999999886
Q ss_pred hc
Q psy18185 170 LF 171 (190)
Q Consensus 170 ~f 171 (190)
..
T Consensus 385 ~v 386 (398)
T PTZ00454 385 TV 386 (398)
T ss_pred HH
Confidence 54
No 137
>PRK05629 hypothetical protein; Validated
Probab=98.42 E-value=4.8e-06 Score=71.91 Aligned_cols=126 Identities=9% Similarity=0.053 Sum_probs=98.1
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..++++++++.+...+.....+...++.+++ .++|+++.. .+ .-..+...++..+.++.+.+++..++.
T Consensus 63 ~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~-------~~---~~kk~~K~l~k~~~~ve~~~~~~~~l~ 132 (318)
T PRK05629 63 GEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSG-------GG---RTKSMVPKLEKIAVVHEAAKLKPRERP 132 (318)
T ss_pred CCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCC-------cc---hhhHHHHHHHhcceEeeCCCCCHHHHH
Confidence 3568999999988777677788888888765 455655521 10 011222356777888999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
.++..++++.|+.++++++++++.. +++|+..+-+-++.+..+. .+.||.++|..++
T Consensus 133 ~wi~~~~~~~g~~i~~~A~~~L~~~-~g~dl~~l~~EleKL~~~~----~~~It~e~V~~~v 189 (318)
T PRK05629 133 GWVTQEFKNHGVRPTPDVVHALLEG-VGSDLRELASAISQLVEDT----QGNVTVEKVRAYY 189 (318)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-HCccHHHHHHHHHHHHhcC----CCCcCHHHHHHHh
Confidence 9999999999999999999999999 6999999988888775432 3469999999876
No 138
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=98.41 E-value=1.5e-05 Score=69.20 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=91.1
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhH--hhhhhheeccCCCHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDL--LDRLLIIRTTPYNQKD 104 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l--~SR~~~i~~~~ls~~e 104 (190)
..+++|++.+.+ +.....|...++.++. .++|+.+.. .+ ....+...+ ...+..+.+.+++..+
T Consensus 80 ~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~-------~~---~~~kl~k~~~~~~~~~~v~~~~~~~~~ 146 (343)
T PRK06585 80 GGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGD-------LK---KGSSLRKLFETAAYAAAIPCYADDERD 146 (343)
T ss_pred CCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCC-------CC---cccHHHHHHhcCCCeeEEecCCCCHHH
Confidence 456799999653 4455667777887654 344443320 10 011111111 1223567888999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+.+++..+++..|+.++++++++++.. .+||++.+.+-|+....++. +.+.||.++|..++..
T Consensus 147 l~~~i~~~~~~~g~~i~~~a~~~L~~~-~g~dl~~l~~EleKL~ly~~--~~~~It~edV~~lv~~ 209 (343)
T PRK06585 147 LARLIDDELAEAGLRITPDARALLVAL-LGGDRLASRNEIEKLALYAH--GKGEITLDDVRAVVGD 209 (343)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHhCC
Confidence 999999999999999999999999999 69999999999999987752 3457999999988743
No 139
>KOG1969|consensus
Probab=98.39 E-value=9.6e-06 Score=76.53 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccC-----------------------CCEEEE
Q psy18185 7 DKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAI-----------------------APIVIF 63 (190)
Q Consensus 7 ~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~-----------------------~~~iIl 63 (190)
..+++.|...|+...--+ ....+.-|+|||||--.+.+.+.|+.+++... .| ||.
T Consensus 366 ~~v~~kI~~avq~~s~l~-adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP-IIC 443 (877)
T KOG1969|consen 366 PMVKEKIENAVQNHSVLD-ADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP-IIC 443 (877)
T ss_pred HHHHHHHHHHHhhccccc-cCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC-EEE
Confidence 346777777776642221 11246789999999999999999999998111 13 666
Q ss_pred EecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy18185 64 ATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQL 143 (190)
Q Consensus 64 atn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~l 143 (190)
+||. -+ -| -..+||--|.++.|.|.+..-+.+.|+.+|..||+.++..++..|++. +.+|+|..||.
T Consensus 444 ICNd---------LY-aP--aLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el-~~~DIRsCINt 510 (877)
T KOG1969|consen 444 ICND---------LY-AP--ALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCEL-TQNDIRSCINT 510 (877)
T ss_pred EecC---------cc-ch--hhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHH-hcchHHHHHHH
Confidence 6752 12 12 234678889999999999999999999999999999999999999999 59999999999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHH
Q psy18185 144 LTPAALTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 144 L~~~~~~a~~~g~~~It~~~V~~~ 167 (190)
|+.++...++. ++.+++.++...
T Consensus 511 LQfLa~~~~r~-ds~i~~~~i~a~ 533 (877)
T KOG1969|consen 511 LQFLASNVDRR-DSSISVKLICAK 533 (877)
T ss_pred HHHHHHhcccc-cccchhhhhhhh
Confidence 99988665542 224555555443
No 140
>PRK07914 hypothetical protein; Reviewed
Probab=98.36 E-value=9.1e-06 Score=70.28 Aligned_cols=127 Identities=8% Similarity=0.078 Sum_probs=97.3
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhh-hhheeccCC-CHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR-LLIIRTTPY-NQKD 104 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR-~~~i~~~~l-s~~e 104 (190)
..+++++++++..+..+....|...++.+++ .++|++++ . +. ....+-.+++.. +.++.+.++ +..+
T Consensus 63 ~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~--------~-~~-~~kk~~K~L~k~g~~~v~~~~~~~~~~ 132 (320)
T PRK07914 63 AEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHS--------G-GG-RAKALANQLRKLGAEVHPCARITKAAE 132 (320)
T ss_pred CCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEec--------C-Cc-chhHHHHHHHHCCCEEEecCCCCCHHH
Confidence 3568999999988877777889999999766 55666552 1 10 111222345544 358899998 9999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+..++..+++..|+.++++++++++.. .+||+..+-+-|+.+..+ ..+.||.++|..++.
T Consensus 133 l~~wi~~~a~~~g~~i~~~A~~~L~~~-~g~dl~~l~~EleKL~~~----~~~~It~e~V~~~v~ 192 (320)
T PRK07914 133 RADFVRKEFRSLRVKVDDDTVTALLDA-VGSDLRELASACSQLVAD----TGGAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-HCccHHHHHHHHHHHhcC----CCCCcCHHHHHHHcC
Confidence 999999999999999999999999999 689999999888865422 224799999998873
No 141
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.35 E-value=3e-06 Score=81.94 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=83.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCccccc------CCC--CCC--C-C----
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVR------GTD--DII--S-P---- 81 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~------~t~--~~~--~-~---- 81 (190)
++.|+++||+|.++++.++.|++++|++. .++||++||.+..-+. |.. ... . .
T Consensus 611 p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~ 690 (821)
T CHL00095 611 PYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRL 690 (821)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHH
Confidence 45899999999999999999999999853 2578999886532110 100 000 0 0
Q ss_pred ---------CCCChhHhhhh-hheeccCCCHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHHhcC--CCCHHHH
Q psy18185 82 ---------HGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT-------E--GHVLDDEALVTLSEIGT--RSTLRYV 140 (190)
Q Consensus 82 ---------~~l~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~-------~--~~~i~~e~l~~i~~~a~--~gdlR~a 140 (190)
..++|+|++|+ .++.|+|++.+++.+|+....+. . .+.+++++.++|++.+. ..++|-.
T Consensus 691 ~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l 770 (821)
T CHL00095 691 SNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPL 770 (821)
T ss_pred HHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhH
Confidence 11468999999 89999999999999998877653 2 46899999999999852 2345544
Q ss_pred HHHHH
Q psy18185 141 VQLLT 145 (190)
Q Consensus 141 i~lL~ 145 (190)
-..++
T Consensus 771 ~r~i~ 775 (821)
T CHL00095 771 RRAIM 775 (821)
T ss_pred HHHHH
Confidence 44443
No 142
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.33 E-value=3.3e-06 Score=76.31 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=89.0
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhc------cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALES------AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~------~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.|+||||+|.+. .+.+..++.++.. ...+.+|++|| .+..+++.+++
T Consensus 277 P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATN-------------r~d~LDpaLlRpG 343 (438)
T PTZ00361 277 PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN-------------RIESLDPALIRPG 343 (438)
T ss_pred CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecC-------------ChHHhhHHhccCC
Confidence 5799999999873 2334444444421 22356777776 26678888764
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
|+ ..|.|++++.++..+|++....+..+ +++ -+..++..+.+.+....-.++..|+..|.++++..||.+++.+++
T Consensus 344 Rfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 344 RIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAK 421 (438)
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 55 57899999999999999988766543 332 245556553333555556678888888988899999999999988
Q ss_pred Hhc
Q psy18185 169 TLF 171 (190)
Q Consensus 169 ~~f 171 (190)
...
T Consensus 422 ~~v 424 (438)
T PTZ00361 422 EKV 424 (438)
T ss_pred HHH
Confidence 654
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.33 E-value=3.8e-06 Score=80.30 Aligned_cols=118 Identities=21% Similarity=0.299 Sum_probs=83.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccc-c---CCCCCCC--------CCCC
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLV-R---GTDDIIS--------PHGI 84 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~-~---~t~~~~~--------~~~l 84 (190)
+++|++|||+|.++++.++.|+++++++. .+++|++||.+...+ + |...... -..+
T Consensus 553 p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f 632 (731)
T TIGR02639 553 PHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLF 632 (731)
T ss_pred CCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhc
Confidence 45899999999999999999999999752 146888887532111 0 0000000 0125
Q ss_pred ChhHhhhh-hheeccCCCHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHHhcC--CCCHHHHHHHHHH
Q psy18185 85 PLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT-------E--GHVLDDEALVTLSEIGT--RSTLRYVVQLLTP 146 (190)
Q Consensus 85 ~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~-------~--~~~i~~e~l~~i~~~a~--~gdlR~ai~lL~~ 146 (190)
+|+|++|+ .++.|+||+.+++..++....++ . .+.++++++++|++.+. +.++|..-..++.
T Consensus 633 ~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 633 SPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred ChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 78999999 58999999999999999887652 2 36899999999999742 2456655555544
No 144
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.32 E-value=1.3e-05 Score=82.31 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=90.5
Q ss_pred CCeEEEEecCCCCCHH-----HHHHHHHHhhcc-----CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh-hh
Q psy18185 29 VPGVLFIDEVHMLDLE-----TFTYLHRALESA-----IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL-LI 94 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~-----~~~~L~~~~E~~-----~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~-~~ 94 (190)
.|.||||||+|.++.. ..+.|+..+... .. +++|+||| .|..++|++++ |+ ..
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN-------------RPD~LDPALLRPGRFDR~ 1798 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH-------------IPQKVDPALIAPNKLNTC 1798 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC-------------CcccCCHhHcCCCCCCeE
Confidence 4689999999999752 245666666532 12 34555554 38899999998 55 56
Q ss_pred eeccCCCHHHHHHHHHHHHHhcCCCCCHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 95 IRTTPYNQKDMEAIIKLRANTEGHVLDDEA--LVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 95 i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~--l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
|.+..++..+-.+++.......|+.++++. +..+|+.+.+-+.+..-+++..|+..|.++++..|+.++++.|+
T Consensus 1799 I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al 1874 (2281)
T CHL00206 1799 IKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSAL 1874 (2281)
T ss_pred EEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 777777766666655533333455555442 67788885344778888899999999999999999999999888
No 145
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.31 E-value=5.1e-06 Score=76.54 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=92.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|+|||||||.|+.+.|..|+++++++. .+.+|++|+.... .......+.++|..|+ ..+
T Consensus 291 ~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~------~~~~~~~f~~~L~~rl~~~~i 364 (534)
T TIGR01817 291 GGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLE------EAVAKGEFRADLYYRINVVPI 364 (534)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHH------HHHHcCCCCHHHHHHhcCCee
Confidence 4899999999999999999999998743 1357777742100 0001234557788886 457
Q ss_pred eccCCC--HHHHHHHHHHHHHh----c--CCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 96 RTTPYN--QKDMEAIIKLRANT----E--GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 96 ~~~~ls--~~ei~~iL~~~~~~----~--~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.++|+. .+|+..++..-+.+ . .+.+++++++.|..+.+.|++|..-+.++.+...+. ...|+.+++.
T Consensus 365 ~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~---~~~I~~~~l~ 439 (534)
T TIGR01817 365 FLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSR---SGTITRSDFS 439 (534)
T ss_pred eCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHCc
Confidence 899998 46776665554432 2 267999999999999889999999999999886543 3468777764
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.31 E-value=3.6e-06 Score=81.78 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCccccCCeEEEEecCCCCCH--------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCC
Q psy18185 11 KEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL--------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 11 ~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~--------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
+.+.+++......+ .+.||||||+|.|.. ++++.|...++.+ ...+|++|+ .+.+....
T Consensus 257 ~~lk~~~~~~~~~~----~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt--------~~e~r~~~ 323 (857)
T PRK10865 257 ERLKGVLNDLAKQE----GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATT--------LDEYRQYI 323 (857)
T ss_pred HHHHHHHHHHHHcC----CCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCC--------CHHHHHHh
Confidence 34555555432222 246999999999953 4789999999886 478888884 21111123
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIG-----TRSTLRYVVQLLTPAAL 149 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a-----~~gdlR~ai~lL~~~~~ 149 (190)
...+++++||+.+.+..++.++...+|+..... .++.++++++...+..+ .+.=+..|+.+++.++.
T Consensus 324 ~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa 399 (857)
T PRK10865 324 EKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS 399 (857)
T ss_pred hhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhc
Confidence 467899999998999999999999999766543 47789999998876663 12344788999988874
No 147
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.26 E-value=4e-05 Score=70.25 Aligned_cols=130 Identities=20% Similarity=0.243 Sum_probs=90.1
Q ss_pred CeEEEEecCCCCCH------------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh-hh
Q psy18185 30 PGVLFIDEVHMLDL------------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL-LI 94 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~-~~ 94 (190)
+.||||||+|.+.. ..+..|+..+++...+++|++| |+ .+..++++++. |+ ..
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT---------TN---~~~~Ld~allR~GRFD~~ 386 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT---------AN---NIDLLPLEILRKGRFDEI 386 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe---------cC---ChhhCCHHHhCCCcCCeE
Confidence 57999999997632 2445566667665556666666 43 37889999876 66 57
Q ss_pred eeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 95 IRTTPYNQKDMEAIIKLRANTEGHV-LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 95 i~~~~ls~~ei~~iL~~~~~~~~~~-i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
+.++.++.++-.++++....+.+.. .++.-++.+++.+.+-+-...-+++..|...|..++ ..+|.+++..++..+.
T Consensus 387 i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 387 FFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALKQFI 464 (489)
T ss_pred EEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcC
Confidence 8999999999999999888775432 335557888888433244555555666666665444 4689999988886543
No 148
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.26 E-value=6.8e-06 Score=78.82 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=82.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccc-c---CC--CCCC------CCCCC
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLV-R---GT--DDII------SPHGI 84 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~-~---~t--~~~~------~~~~l 84 (190)
+++|+++||+|.++++.++.|++++|++. .+++|++||.+...+ + |. ++.. .-..+
T Consensus 557 p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f 636 (758)
T PRK11034 557 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF 636 (758)
T ss_pred CCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhc
Confidence 35899999999999999999999999652 246888888431110 0 00 0000 00235
Q ss_pred ChhHhhhhh-heeccCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHhcCC--CCHHHHHHHHHH
Q psy18185 85 PLDLLDRLL-IIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEIGTR--STLRYVVQLLTP 146 (190)
Q Consensus 85 ~~~l~SR~~-~i~~~~ls~~ei~~iL~~~~~~---------~~~~i~~e~l~~i~~~a~~--gdlR~ai~lL~~ 146 (190)
+|+|+.|+- ++.|+|++.+++.+|+.....+ ..+.++++++++|++.+.. .++|-.-..++.
T Consensus 637 ~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 637 TPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred CHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 789999995 8899999999999998765431 3567899999999988522 345544444443
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.24 E-value=8.8e-06 Score=79.04 Aligned_cols=120 Identities=22% Similarity=0.346 Sum_probs=88.4
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCccccc---CCCCC---------CCCCCC
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVR---GTDDI---------ISPHGI 84 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~---~t~~~---------~~~~~l 84 (190)
++.||++||++.++++.++.|+++++++. .+++|++||.+...+. +..+. .-...+
T Consensus 667 p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F 746 (852)
T TIGR03346 667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHF 746 (852)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhc
Confidence 34799999999999999999999999763 1568888885321110 00000 001235
Q ss_pred ChhHhhhh-hheeccCCCHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Q psy18185 85 PLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT-------E--GHVLDDEALVTLSEIGT--RSTLRYVVQLLTPAA 148 (190)
Q Consensus 85 ~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~-------~--~~~i~~e~l~~i~~~a~--~gdlR~ai~lL~~~~ 148 (190)
.|+|..|+ .++.|.|++.+++.+|+...... . .+.++++++++|++.+. .+++|..-+.++...
T Consensus 747 ~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 747 RPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred CHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 68899998 68899999999999998876542 2 36799999999999965 578888877777654
No 150
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.24 E-value=6.5e-06 Score=71.74 Aligned_cols=116 Identities=23% Similarity=0.253 Sum_probs=86.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|+|||||||.|+.+.|..|++++++.. .+.+|.+|+... +.......+.++|..|+ ..+
T Consensus 94 gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l------~~~~~~g~fr~dL~~rl~~~~i 167 (329)
T TIGR02974 94 GGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADL------PALAAEGRFRADLLDRLAFDVI 167 (329)
T ss_pred CCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhH------HHHhhcCchHHHHHHHhcchhc
Confidence 4899999999999999999999998753 136777775200 00001234457888897 578
Q ss_pred eccCCCH--HHHHHHHHHHH----HhcC----CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy18185 96 RTTPYNQ--KDMEAIIKLRA----NTEG----HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~----~~~~----~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a 151 (190)
.++|+.+ +|+..++..-. .+.| ..+++++++.|..+.+.|++|..-+.++.+...+
T Consensus 168 ~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 168 TLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 9999994 67776655433 2323 3689999999999988999999999999988655
No 151
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.23 E-value=2.5e-05 Score=71.78 Aligned_cols=141 Identities=20% Similarity=0.203 Sum_probs=91.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC--------------CCEEEEEecCCcccccCCC----CCCC------CCCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTD----DIIS------PHGIP 85 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~--------------~~~iIlatn~~~~~~~~t~----~~~~------~~~l~ 85 (190)
.|+|||||++.+++..++.|+..+|++. ...+|.++|...|---|.. ...+ ...++
T Consensus 296 ~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is 375 (499)
T TIGR00368 296 NGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLS 375 (499)
T ss_pred CCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhcc
Confidence 4899999999999999999999999753 1467777752100000000 0000 12577
Q ss_pred hhHhhhh-hheeccCCCHHHH------------HHHH-HHHHHh----cC------------------CCCCHHHHHHHH
Q psy18185 86 LDLLDRL-LIIRTTPYNQKDM------------EAII-KLRANT----EG------------------HVLDDEALVTLS 129 (190)
Q Consensus 86 ~~l~SR~-~~i~~~~ls~~ei------------~~iL-~~~~~~----~~------------------~~i~~e~l~~i~ 129 (190)
.+|++|+ ..+.+++++.+++ ++.+ +.|..+ .+ +.+++++.+.+.
T Consensus 376 ~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~ 455 (499)
T TIGR00368 376 GPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLE 455 (499)
T ss_pred HhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHH
Confidence 8899998 5678888766654 2222 111111 11 124666666655
Q ss_pred HhcC--CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 130 EIGT--RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 130 ~~a~--~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
.... +=+.|....+|..|..+|-.+|...|+.+||.+++.+
T Consensus 456 ~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 456 GALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 5532 2377888888988888888899999999999999863
No 152
>PRK05907 hypothetical protein; Provisional
Probab=98.23 E-value=7e-05 Score=64.95 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=95.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhh---hhhhe----eccCC
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD---RLLII----RTTPY 100 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S---R~~~i----~~~~l 100 (190)
.++++++.+.+.++......|...+++|++ .++|+.+.. . ..-..++. ++..+ .++++
T Consensus 69 erRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~-------~-------d~~kkl~K~i~k~~~v~~~~e~~~l 134 (311)
T PRK05907 69 SQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK-------Q-------ECFSSLSKKLSSALCLSLFGEWFAD 134 (311)
T ss_pred CeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec-------c-------cHHHHHHHHHhhcceeccccccCCC
Confidence 457888888888877677899999999876 345533410 1 11111222 25555 89999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGT-RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~-~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.+.++.+++..++++.|..++++++++++.. . +||+..+.+=|+.+..++- +++.||.++|..++.
T Consensus 135 ~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~-~~~~nL~~l~~EleKL~ly~g--~~~~It~e~V~~lv~ 201 (311)
T PRK05907 135 RDKRIAQLLIQRAKELGISCSLGLASLFVSK-FPQTGLFEILSEFQKLLCQMG--KKESLEASDIQSFVV 201 (311)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-ccCCCHHHHHHHHHHHHHhcC--CCCeECHHHHHHHhc
Confidence 9999999999999999999999999999999 5 5899999999999887742 345799999999874
No 153
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.22 E-value=2e-05 Score=74.03 Aligned_cols=131 Identities=23% Similarity=0.372 Sum_probs=94.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC----------------------CCEEEEEecCCcccccCCCCCCCCCCCChh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI----------------------APIVIFATNRGRCLVRGTDDIISPHGIPLD 87 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~----------------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~ 87 (190)
.|+|||||++.|+.+.|..|+++++++. ...+|+++| .+ ....+.++
T Consensus 218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~--------~~---~l~~l~~~ 286 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGN--------LD---DLEGMHPA 286 (608)
T ss_pred CCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECC--------HH---HHhhcCHH
Confidence 3899999999999999999999997532 124666664 11 13467899
Q ss_pred Hhhhhh----heecc---CCCHHHHHHHHHH---HHHhcC--CCCCHHHHHHHHHhcC---------CCCHHHHHHHHHH
Q psy18185 88 LLDRLL----IIRTT---PYNQKDMEAIIKL---RANTEG--HVLDDEALVTLSEIGT---------RSTLRYVVQLLTP 146 (190)
Q Consensus 88 l~SR~~----~i~~~---~ls~~ei~~iL~~---~~~~~~--~~i~~e~l~~i~~~a~---------~gdlR~ai~lL~~ 146 (190)
|++|+- .+.|+ |.+.+...++++. .+++.| ..++++++..|.+.++ ..+.|..-+++..
T Consensus 287 l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~ 366 (608)
T TIGR00764 287 LRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRA 366 (608)
T ss_pred HHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 999986 23333 3455555444443 344442 3689999999987532 1357999999999
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 147 AALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 147 ~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
|...|..++...||.++|.+++...
T Consensus 367 A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 367 AGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHhcCCceecHHHHHHHHHHH
Confidence 9888887888899999999988654
No 154
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=98.20 E-value=4.7e-05 Score=66.11 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=93.9
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCC-CCChhHhhh--hhheeccCCCHHH
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPH-GIPLDLLDR--LLIIRTTPYNQKD 104 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~-~l~~~l~SR--~~~i~~~~ls~~e 104 (190)
..++++++.+...+.......|...++.++..++|+.... .. ... .+-.-+... +..+.+.++++.+
T Consensus 70 ~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~-------~~---~k~kkl~k~~~~~k~~~~v~~~~~~~~~ 139 (328)
T PRK08487 70 GGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYG-------AD---SKTKDIEKLFQKKDEAVFVRFFKPNARE 139 (328)
T ss_pred CCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecC-------Cc---chhHHHHHHhccCCCceEEEeeCCCHHH
Confidence 3568999998877766666888888888765444443310 10 010 000111111 4578899999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+..++..++++.|+.++++++++++.. +++|+..+.+=|+.+..+.. .||.++|..++.-
T Consensus 140 l~~~i~~~~~~~g~~i~~~a~~~L~~~-~g~dl~~l~~ELeKL~ly~~-----~It~edV~~~v~~ 199 (328)
T PRK08487 140 ALELLQERAKELGLDIDQNALNHLYFI-HNEDLALAANELEKLAILNE-----PITLKDIQELVFG 199 (328)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHH-hCcHHHHHHHHHHHHHHhcC-----CCCHHHHHHHhcc
Confidence 999999999999999999999999999 69999999999999887732 6999999998743
No 155
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.20 E-value=2.3e-05 Score=70.41 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=92.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|.|||||||.|+.+.|..|+++++++. .+.+|++|+..... ......+.+++..|+ ..+
T Consensus 229 ~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~------~~~~~~f~~~L~~rl~~~~i 302 (463)
T TIGR01818 229 GGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEA------LVRQGKFREDLFHRLNVIRI 302 (463)
T ss_pred CCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHH------HHHcCCcHHHHHHHhCccee
Confidence 4899999999999999999999998753 13577777421000 001123445788886 478
Q ss_pred eccCCC--HHHHHHHHHHHHH----hcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 96 RTTPYN--QKDMEAIIKLRAN----TEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 96 ~~~~ls--~~ei~~iL~~~~~----~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
.++|+. .+|+..++....+ ..| ..+++++++.|..+.+.|++|..-+.++.+...+. ...|+++++..
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~ 379 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPA 379 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHhchH
Confidence 899999 6788777665433 233 46899999999999889999999999999987653 23677777653
No 156
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.17 E-value=4.3e-05 Score=72.21 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCeEEEEecCCCCCH--------------HHHHHHHHHhhccC---CCEEEEEecCCcccccCCCCCCCCCCCChhHhh-
Q psy18185 29 VPGVLFIDEVHMLDL--------------ETFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD- 90 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~---~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S- 90 (190)
.+.|+||||+|.+.. ...+.|+..++... .+++|.+|| .|..+++.++.
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN-------------~p~~lD~Al~Rp 310 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN-------------RPDVLDPALLRP 310 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecC-------------ChhhcCHHHhCC
Confidence 357999999999932 13444554455322 245555664 37888988875
Q ss_pred -hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 91 -RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 91 -R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
|+ ..+.++.++.++...+++....+..+.-+ --+..+++.+.+-+....-+++..|+..|.+.++..||..++.++.
T Consensus 311 gRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 311 GRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-IDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred cccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 66 67899999999999999988766433211 1245677774233666777778888887888888899999998887
Q ss_pred H
Q psy18185 169 T 169 (190)
Q Consensus 169 ~ 169 (190)
.
T Consensus 390 ~ 390 (644)
T PRK10733 390 D 390 (644)
T ss_pred H
Confidence 4
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.15 E-value=2.6e-05 Score=75.82 Aligned_cols=119 Identities=24% Similarity=0.388 Sum_probs=83.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccC-----------C-CEEEEEecCCccccc---CCCC---------CCCCCCC
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAI-----------A-PIVIFATNRGRCLVR---GTDD---------IISPHGI 84 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~-----------~-~~iIlatn~~~~~~~---~t~~---------~~~~~~l 84 (190)
+++||+|||++.++++.++.|+++++++. . +++|++||.+...+. |... ..-...+
T Consensus 670 p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f 749 (857)
T PRK10865 670 PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNF 749 (857)
T ss_pred CCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccc
Confidence 35899999999999999999999999752 1 457888874211000 0000 0001235
Q ss_pred ChhHhhhh-hheeccCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHhcCC--CCHHHHHHHHHHH
Q psy18185 85 PLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT-------EG--HVLDDEALVTLSEIGTR--STLRYVVQLLTPA 147 (190)
Q Consensus 85 ~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~-------~~--~~i~~e~l~~i~~~a~~--gdlR~ai~lL~~~ 147 (190)
.|+|++|+ .++.|.|++.+++..++...... .| +.++++++++|++.+.. .++|-.-+.++..
T Consensus 750 ~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 750 RPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred cHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 68999999 89999999999999988766543 23 56899999999998533 3566655555443
No 158
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.14 E-value=2.6e-05 Score=67.16 Aligned_cols=125 Identities=16% Similarity=0.114 Sum_probs=86.2
Q ss_pred CeEEEEecCCCCC---H----HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCH
Q psy18185 30 PGVLFIDEVHMLD---L----ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQ 102 (190)
Q Consensus 30 ~~Il~IDEi~~L~---~----~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~ 102 (190)
.++|+|||+|.+- . +..|+|..+..+- ...+|+++ |.+-.....-.+.+.||+..+.+++...
T Consensus 146 vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~vG---------t~~A~~al~~D~QLa~RF~~~~Lp~W~~ 215 (302)
T PF05621_consen 146 VRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGVG---------TREAYRALRTDPQLASRFEPFELPRWEL 215 (302)
T ss_pred CcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEec---------cHHHHHHhccCHHHHhccCCccCCCCCC
Confidence 4899999999972 1 3444444444443 33355555 2221112222467999999999998887
Q ss_pred HHHHHHHHHHHHh-------cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 103 KDMEAIIKLRANT-------EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 103 ~ei~~iL~~~~~~-------~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
++=..-|-...+. .++ -+++...+|... ++|......++|..|+..|.++|...||.+.+..
T Consensus 216 d~ef~~LL~s~e~~LPLr~~S~l-~~~~la~~i~~~-s~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 216 DEEFRRLLASFERALPLRKPSNL-ASPELARRIHER-SEGLIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred CcHHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 6444444334332 233 456777999999 7999999999999999999999999999888775
No 159
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.13 E-value=2.1e-05 Score=70.77 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=89.7
Q ss_pred CeEEEEecCCCCCH------------HHHHHHHHHhhccCC-----------CEEEEEecCCcccccCCCCCCCCCCCCh
Q psy18185 30 PGVLFIDEVHMLDL------------ETFTYLHRALESAIA-----------PIVIFATNRGRCLVRGTDDIISPHGIPL 86 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------------~~~~~L~~~~E~~~~-----------~~iIlatn~~~~~~~~t~~~~~~~~l~~ 86 (190)
.||+||||+|.+.. ..|..|++++|.... ..||.++- | +...|..+.|
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GA--F-------~~~kp~DlIP 318 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGA--F-------QLAKPSDLIP 318 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCC--c-------CCCChhhccH
Confidence 48999999999942 599999999997432 13344332 1 1123677889
Q ss_pred hHhhhhh-heeccCCCHHHHHHHHHHH-----------HHhcCC--CCCHHHHHHHHHhcC-------CCCHHHHHHHHH
Q psy18185 87 DLLDRLL-IIRTTPYNQKDMEAIIKLR-----------ANTEGH--VLDDEALVTLSEIGT-------RSTLRYVVQLLT 145 (190)
Q Consensus 87 ~l~SR~~-~i~~~~ls~~ei~~iL~~~-----------~~~~~~--~i~~e~l~~i~~~a~-------~gdlR~ai~lL~ 145 (190)
+|..|+. ++.+++++.+++.+||..- .+.+|+ .+++++++.||+.|. +-++|..-.+++
T Consensus 319 El~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE 398 (441)
T TIGR00390 319 ELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLE 398 (441)
T ss_pred HHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHH
Confidence 9999995 5799999999999999322 123554 679999999999963 347777777776
Q ss_pred HHHHH----hhhc-C-CCcccHHHHHHHHH
Q psy18185 146 PAALT----AKTN-G-RTAISKQDILEVST 169 (190)
Q Consensus 146 ~~~~~----a~~~-g-~~~It~~~V~~~~~ 169 (190)
....- +... + .-.||.+.|+..++
T Consensus 399 ~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~ 428 (441)
T TIGR00390 399 RLLEDISFEAPDLSGQNITIDADYVSKKLG 428 (441)
T ss_pred HHHHHHHhcCCCCCCCEEEECHHHHHhHHH
Confidence 65532 1111 1 12477777766553
No 160
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.6e-05 Score=74.61 Aligned_cols=127 Identities=23% Similarity=0.234 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCccccCCeEEEEecCCCCC---------HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCC
Q psy18185 11 KEINKVVNKYIDQGIAELVPGVLFIDEVHMLD---------LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISP 81 (190)
Q Consensus 11 ~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~---------~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~ 81 (190)
+.+..++++....+ .-||||||+|-+- .++.|.|-..+..+ ...+|+||+ ++.+...
T Consensus 249 eRlk~vl~ev~~~~-----~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT--------~~EYRk~ 314 (786)
T COG0542 249 ERLKAVLKEVEKSK-----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATT--------LDEYRKY 314 (786)
T ss_pred HHHHHHHHHHhcCC-----CeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEecc--------HHHHHHH
Confidence 34555555532222 3699999999991 45889999999886 468999995 3333223
Q ss_pred CCCChhHhhhhhheeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHh
Q psy18185 82 HGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGT-----RSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 82 ~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~-----~gdlR~ai~lL~~~~~~a 151 (190)
..=.++|-.|+|.+.+..+|.++...||+-.... .|+.|+|+|+.+.+.... +.=+.+||.++|.|+...
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~ 393 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARV 393 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHH
Confidence 3335789999999999999999999999877654 689999999999999831 223478999999988543
No 161
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.10 E-value=3.4e-05 Score=71.31 Aligned_cols=131 Identities=22% Similarity=0.191 Sum_probs=91.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|.|||||||.|+.+.|..|++++++..- +.+|.+|+... +.......+..++..|+ ..+
T Consensus 308 gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l------~~~v~~g~fr~dL~~rL~~~~I 381 (526)
T TIGR02329 308 RGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCAL------TTAVQQGRFRRDLFYRLSILRI 381 (526)
T ss_pred CceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCH------HHHhhhcchhHHHHHhcCCcEE
Confidence 48999999999999999999999987431 25777775210 00001123344666664 678
Q ss_pred eccCCCH--HHHHHHHHHHH----HhcCCCCCHHHHHH-------HHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLRA----NTEGHVLDDEALVT-------LSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~----~~~~~~i~~e~l~~-------i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.+||+.+ +|+..+...-. ...++.+++++++. +..+.+.|++|..-+.++.+...+.......|+.+
T Consensus 382 ~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~ 461 (526)
T TIGR02329 382 ALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPD 461 (526)
T ss_pred eCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHH
Confidence 9999987 56665544433 34566799999998 88888899999999999998865421123467777
Q ss_pred HHHH
Q psy18185 163 DILE 166 (190)
Q Consensus 163 ~V~~ 166 (190)
++..
T Consensus 462 ~l~~ 465 (526)
T TIGR02329 462 VLRA 465 (526)
T ss_pred Hhhh
Confidence 7653
No 162
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.10 E-value=2e-05 Score=74.10 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=90.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|.||||||+.|+.+.|..|+++++++. .+.+|.+|+.... .......+.+++..|. ..+
T Consensus 417 ~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~------~~~~~~~f~~dL~~~l~~~~i 490 (638)
T PRK11388 417 GGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLA------MLVEQNRFSRQLYYALHAFEI 490 (638)
T ss_pred CCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHH------HHHhcCCChHHHhhhhceeEE
Confidence 4899999999999999999999998753 1347777752100 0001233445666664 567
Q ss_pred eccCCCH--HHHHHHHHHHHHh----c--CCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLRANT----E--GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~~~----~--~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~ 167 (190)
.++|+.+ +|+..++....++ . .+.+++++++.|..+.+.|++|..-+.++.+...+. ...|+.+++...
T Consensus 491 ~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~---~~~i~~~~lp~~ 567 (638)
T PRK11388 491 TIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSD---NGRIRLSDLPEH 567 (638)
T ss_pred eCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCC---CCeecHHHCchh
Confidence 8888887 4666655554432 2 356899999999999889999999999999876542 235777776543
No 163
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.10 E-value=9.3e-05 Score=69.85 Aligned_cols=128 Identities=23% Similarity=0.305 Sum_probs=94.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-----------------C-----CEEEEEecCCcccccCCCCCCCCCCCChh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-----------------A-----PIVIFATNRGRCLVRGTDDIISPHGIPLD 87 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-----------------~-----~~iIlatn~~~~~~~~t~~~~~~~~l~~~ 87 (190)
.|+|||||++.|++.+|..|++++++.. . ..+|+++| . + ....+.|+
T Consensus 227 GGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~--------~-~--ll~~~dpd 295 (637)
T PRK13765 227 KGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGN--------L-D--ALENMHPA 295 (637)
T ss_pred CcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecC--------c-C--HHHhhhHH
Confidence 4899999999999999999999997433 1 24677774 1 1 23556789
Q ss_pred Hhhhhhh----eecc---CCCHHHHHHHHHHHHHh---c--CCCCCHHHHHHHHHhcC--CC-------CHHHHHHHHHH
Q psy18185 88 LLDRLLI----IRTT---PYNQKDMEAIIKLRANT---E--GHVLDDEALVTLSEIGT--RS-------TLRYVVQLLTP 146 (190)
Q Consensus 88 l~SR~~~----i~~~---~ls~~ei~~iL~~~~~~---~--~~~i~~e~l~~i~~~a~--~g-------dlR~ai~lL~~ 146 (190)
|++|+.. +.|. +-+++.....++..++. . -..++++++..|.+.++ .| .+|..-+++..
T Consensus 296 L~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~ 375 (637)
T PRK13765 296 LRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRV 375 (637)
T ss_pred HHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHH
Confidence 9999842 4454 34466666677655543 2 23699999999999742 12 27888899999
Q ss_pred HHHHhhhcCCCcccHHHHHHHH
Q psy18185 147 AALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 147 ~~~~a~~~g~~~It~~~V~~~~ 168 (190)
+..+|+..+...++.++|.++.
T Consensus 376 a~~~a~~~~~~~i~~~~v~~a~ 397 (637)
T PRK13765 376 AGDIARSEGAELTTAEHVLEAK 397 (637)
T ss_pred HHHHHHhhccceecHHHHHHHH
Confidence 9999988888899999998776
No 164
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.09 E-value=6e-05 Score=67.47 Aligned_cols=126 Identities=23% Similarity=0.283 Sum_probs=86.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|+|||||++.|+.+.|..|++++++.. ...+|++|+.... .......+.++|..|+ ..+
T Consensus 234 ~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i 307 (445)
T TIGR02915 234 GGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLK------RMIAEGTFREDLFYRIAEISI 307 (445)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHH------HHHHcCCccHHHHHHhcccee
Confidence 4899999999999999999999998642 1357777742000 0000134456677776 467
Q ss_pred eccCCCH--HHHHHHHHHHH----HhcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLRA----NTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~----~~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
.++|+.+ +|+..+....+ ...| ..+++++++.+..+.+.|++|..-+.++.+...+. ...|+.+++
T Consensus 308 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 308 TIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred cCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 8888876 35554444333 2223 46899999999999889999999999999986543 224555544
No 165
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.09 E-value=4e-05 Score=68.28 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=86.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCC---CCCCCCChhHhhhh--
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDI---ISPHGIPLDLLDRL-- 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~---~~~~~l~~~l~SR~-- 92 (190)
.|+|||||+|.|+...|..|++.++++.. +.+|.+|+. ++ ..+..+.++|..|+
T Consensus 234 ~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~---------~~~~~~~~~~~~~~l~~~l~~ 304 (441)
T PRK10365 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR---------DLAAEVNAGRFRQDLYYRLNV 304 (441)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCC---------CHHHHHHcCCchHHHHHHhcc
Confidence 48999999999999999999999997531 246777741 11 01223445566664
Q ss_pred hheeccCCCH--HHHHHHHHHHHH----hcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 93 LIIRTTPYNQ--KDMEAIIKLRAN----TEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 93 ~~i~~~~ls~--~ei~~iL~~~~~----~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
..+.++|+.+ +|+..+.....+ ..+ ..+++++++.|..+.+.||+|...+.++.+...+. ...|+.++
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~---~~~i~~~~ 381 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLT---GEYISERE 381 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CCccchHh
Confidence 4567788875 355555444433 222 35899999999999889999999999999876542 23577766
Q ss_pred HHH
Q psy18185 164 ILE 166 (190)
Q Consensus 164 V~~ 166 (190)
+..
T Consensus 382 l~~ 384 (441)
T PRK10365 382 LPL 384 (441)
T ss_pred Cch
Confidence 653
No 166
>PRK15115 response regulator GlrR; Provisional
Probab=98.08 E-value=3.2e-05 Score=69.22 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=85.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|.|||||+|.|+.+.|..|+++++++. .+.+|.+|+.... .......+..++..|+ ..+
T Consensus 229 ~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~------~~~~~~~f~~~l~~~l~~~~i 302 (444)
T PRK15115 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLP------KAMARGEFREDLYYRLNVVSL 302 (444)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHH------HHHHcCCccHHHHHhhceeee
Confidence 4899999999999999999999998753 1256666641000 0000112334455553 456
Q ss_pred eccCCCH--HHHHHHHHHHH----HhcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLRA----NTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~----~~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
.++|+.+ +|+..++..-. ...+ ..+++++++.|..+.+.||+|..-+.++.+...+. ...|+.+++..
T Consensus 303 ~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~---~~~i~~~~l~~ 379 (444)
T PRK15115 303 KIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS---SPVISDALVEQ 379 (444)
T ss_pred cCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCccChhhhhh
Confidence 6777765 46654444333 2223 24899999999999779999999999999876543 33577776653
No 167
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=98.08 E-value=5.1e-06 Score=64.74 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCeEEEEecC----CCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHH
Q psy18185 29 VPGVLFIDEV----HMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQK 103 (190)
Q Consensus 29 ~~~Il~IDEi----~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ 103 (190)
..+|++|.++ +.........|...++.+++ ..+|+.++ . .......+...+...+.++.+.+++..
T Consensus 57 ~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~--------~-~~~~~~k~~k~l~~~~~~~~~~~~~~~ 127 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSE--------E-KLDKRKKLYKALKKQAIVIECKKPKEQ 127 (172)
T ss_dssp SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES----------S--HHHHHHHHHTTTEEEEEE----TT
T ss_pred CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeC--------C-chhhhhhHHHHHhcccceEEecCCCHH
Confidence 3479999999 55667888999999998766 44555552 0 000011123456666788999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
++..+++.++++.|+.++++++++++.. .++|++.+.+-|+...
T Consensus 128 ~~~~~i~~~~~~~g~~i~~~a~~~L~~~-~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 128 ELPRWIKERAKKNGLKIDPDAAQYLIER-VGNDLSLLQNELEKLS 171 (172)
T ss_dssp THHHHHHHHHHHTT-EE-HHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-hChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 6999999888877653
No 168
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.06 E-value=8.2e-05 Score=68.67 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=79.5
Q ss_pred CeEEEEecCCCCCH----HHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCC----CC-CCCChhHhhh--hhheec
Q psy18185 30 PGVLFIDEVHMLDL----ETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDII----SP-HGIPLDLLDR--LLIIRT 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~~----~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~----~~-~~l~~~l~SR--~~~i~~ 97 (190)
.+||+|+|.=.... ...++|.+.+..+.. |++|++|.-. ...|..+.. .. ..+|++++.. +..|.|
T Consensus 133 ~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~--~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETE--SLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF 210 (519)
T ss_pred ceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEeccc--ccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence 57899998766532 445555566666656 8777777310 000111000 01 1356788775 578999
Q ss_pred cCCCHHHHHHHHHHHHHhc-----CC-CCC--HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy18185 98 TPYNQKDMEAIIKLRANTE-----GH-VLD--DEALVTLSEIGTRSTLRYVVQLLTPAAL 149 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~-----~~-~i~--~e~l~~i~~~a~~gdlR~ai~lL~~~~~ 149 (190)
+|++..-++..|.+++..| |. ..+ .++++.|+.. +.||+|.||+.|+..+.
T Consensus 211 NpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~-s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 211 NPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES-SNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh-cCchHHHHHHHHHHHhc
Confidence 9999999999999999877 32 233 3569999999 69999999999998875
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.06 E-value=0.00012 Score=67.03 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=94.0
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccC----C-------CEEEEEecCCcccccCCCCCCC-CCCCChhHhhhhh-heec
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAI----A-------PIVIFATNRGRCLVRGTDDIIS-PHGIPLDLLDRLL-IIRT 97 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~----~-------~~iIlatn~~~~~~~~t~~~~~-~~~l~~~l~SR~~-~i~~ 97 (190)
.++|+||++.+++..|+.|+.++++.. + +.+++||| +.| ......++..|+. .+.+
T Consensus 109 ~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN-----------~LPE~g~~leAL~DRFliri~v 177 (498)
T PRK13531 109 EIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN-----------ELPEADSSLEALYDRMLIRLWL 177 (498)
T ss_pred cEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC-----------CCcccCCchHHhHhhEEEEEEC
Confidence 489999999999999999999996533 1 34455553 211 1233458999984 4788
Q ss_pred cCCCH-HHHHHHHHHHHH-----------------------hcCCCCCHHHHHHHHHhc-----CC----CCHHHHHHHH
Q psy18185 98 TPYNQ-KDMEAIIKLRAN-----------------------TEGHVLDDEALVTLSEIG-----TR----STLRYVVQLL 144 (190)
Q Consensus 98 ~~ls~-~ei~~iL~~~~~-----------------------~~~~~i~~e~l~~i~~~a-----~~----gdlR~ai~lL 144 (190)
+++++ ++..++|..... -..+.+++++.++|.... .+ -+.|..+.++
T Consensus 178 p~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~ 257 (498)
T PRK13531 178 DKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAI 257 (498)
T ss_pred CCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 88874 555666654211 146778899999998873 12 3678888888
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHhccChH
Q psy18185 145 TPAALTAKTNGRTAISKQDILEVSTLFLDAK 175 (190)
Q Consensus 145 ~~~~~~a~~~g~~~It~~~V~~~~~~f~~~~ 175 (190)
..+...|-..|+..|+.+||.-+...+.+.-
T Consensus 258 ~~akA~A~l~GR~~V~p~Dv~ll~~vL~HRl 288 (498)
T PRK13531 258 RLLQASAFFSGRDAIAPIDLILLKDCLWHDA 288 (498)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHhHHHhccCH
Confidence 8888888889999999999994334444433
No 170
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.04 E-value=5.4e-05 Score=69.81 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=88.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|.|||||||.|+.+.|..|+++++++. .+.+|.+|+..... ......+.+++..|. ..+
T Consensus 299 ~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~------l~~~g~f~~dL~~rL~~~~i 372 (520)
T PRK10820 299 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE------LVQKGEFREDLYYRLNVLTL 372 (520)
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH------HHHcCCccHHHHhhcCeeEE
Confidence 4899999999999999999999998742 12566666410000 001223456788884 678
Q ss_pred eccCCCH--HHHHHH----HHHHHHhcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 96 RTTPYNQ--KDMEAI----IKLRANTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 96 ~~~~ls~--~ei~~i----L~~~~~~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
.++|+.+ +|+..+ +.+.+.+.| ..++++++++|..+.+.|++|..-+.+.++...+. ...|+.+++
T Consensus 373 ~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~---~~~i~~~~~ 447 (520)
T PRK10820 373 NLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLE---GYELRPQDI 447 (520)
T ss_pred eCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 9999988 456544 333344444 36999999999999889999999999999876542 224555553
No 171
>KOG1970|consensus
Probab=97.99 E-value=6.7e-05 Score=69.04 Aligned_cols=113 Identities=12% Similarity=0.198 Sum_probs=78.3
Q ss_pred CeEEEEecCCCCCH-----HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh--hhheeccCCCH
Q psy18185 30 PGVLFIDEVHMLDL-----ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR--LLIIRTTPYNQ 102 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR--~~~i~~~~ls~ 102 (190)
+++|+|||.=.... ..++.|..+...+..|+++++|+. ..+|.++ +.-..+.++.-+ ...+.|+|+.+
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~---~~~g~nn--q~rlf~~d~q~~~ri~~IsFNPIa~ 269 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDS---LSNGNNN--QDRLFPKDIQEEPRISNISFNPIAP 269 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEecc---ccCCCcc--hhhhchhhhhhccCcceEeecCCcH
Confidence 46888999765532 234444444445555888888853 3334432 222334444444 46899999999
Q ss_pred HHHHHHHHHHHHhcCCCCC------HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 103 KDMEAIIKLRANTEGHVLD------DEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~------~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
.=++..|.++|..++...+ ...++.++.. ++||+|.||+.|+.-+
T Consensus 270 T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 270 TIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 9999999999998776666 5667777777 6999999999999874
No 172
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.98 E-value=2.8e-05 Score=69.42 Aligned_cols=112 Identities=31% Similarity=0.343 Sum_probs=81.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCCh--hHhhhh--h
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPL--DLLDRL--L 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~--~l~SR~--~ 93 (190)
.|.||+||+|.|.++.|..|++++|++.. +.+|.||+ ++ .+..+.. +|..|+ .
T Consensus 174 GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~---------~~--l~~~~~~g~dl~~rl~~~ 242 (403)
T COG1221 174 GGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT---------ED--LEEAVLAGADLTRRLNIL 242 (403)
T ss_pred CCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccc---------cC--HHHHHHhhcchhhhhcCc
Confidence 48999999999999999999999997331 57888884 33 2444555 788876 4
Q ss_pred heeccCCCHH--HHHHHH----HHHHHhcCCC---CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy18185 94 IIRTTPYNQK--DMEAII----KLRANTEGHV---LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 94 ~i~~~~ls~~--ei~~iL----~~~~~~~~~~---i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~ 152 (190)
.++++|+.+- |+...+ +..+.+.+.. .+++++..+..+...|++|..-|+++.+...+.
T Consensus 243 ~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 243 TITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 6789998875 333322 2234443332 335889999888789999999999999987653
No 173
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.98 E-value=5.4e-05 Score=70.15 Aligned_cols=129 Identities=22% Similarity=0.200 Sum_probs=88.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|.||||||+.|+.+.|..|++++++... +.+|.+|+.... .......+..++..|+ ..+
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~------~~v~~g~Fr~dL~yrL~~~~I 396 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLE------EDVRQGRFRRDLFYRLSILRL 396 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHH------HHHhcccchHHHHHHhcCCee
Confidence 48999999999999999999999987431 257887752100 0001122345666664 678
Q ss_pred eccCCCH--HHHHHHHHHHHH----hcCCCCCHHHH-------HHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLRAN----TEGHVLDDEAL-------VTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQ 162 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~~----~~~~~i~~e~l-------~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~ 162 (190)
.++|+.+ +|+..+...-.+ ..+..++++++ +.+..+.+.|++|..-|+++++..++.......|+.+
T Consensus 397 ~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~ 476 (538)
T PRK15424 397 QLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQ 476 (538)
T ss_pred cCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHH
Confidence 8999987 566655554443 35667888776 6777777889999999999998876432222356655
Q ss_pred HH
Q psy18185 163 DI 164 (190)
Q Consensus 163 ~V 164 (190)
++
T Consensus 477 ~l 478 (538)
T PRK15424 477 FL 478 (538)
T ss_pred Hh
Confidence 54
No 174
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.96 E-value=8.4e-05 Score=68.30 Aligned_cols=117 Identities=26% Similarity=0.272 Sum_probs=84.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|.|||||||.|..+.|..|++++++.. .+.+|.+|+.... .......+..+|..|+ ..+
T Consensus 282 gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~dL~~rl~~~~i 355 (509)
T PRK05022 282 GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLR------EEVRAGRFRADLYHRLSVFPL 355 (509)
T ss_pred CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHH------HHHHcCCccHHHHhcccccEe
Confidence 3799999999999999999999998643 1367887752100 0011233556777775 457
Q ss_pred eccCCCH--HHHHHHHHHH----HHhc---CCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy18185 96 RTTPYNQ--KDMEAIIKLR----ANTE---GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~----~~~~---~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~ 152 (190)
.++|+.+ +|+-.+...- +.+. .+.+++++++.|..+.+.|++|..-+.++.+...+.
T Consensus 356 ~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 356 SVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred eCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 8999887 4665554433 2232 367999999999999889999999999999987654
No 175
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.96 E-value=0.00021 Score=68.47 Aligned_cols=125 Identities=22% Similarity=0.337 Sum_probs=81.1
Q ss_pred CCeEEEEecCCCCCH------------HHHHHHHHHhhc---cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--h
Q psy18185 29 VPGVLFIDEVHMLDL------------ETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--R 91 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~------------~~~~~L~~~~E~---~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R 91 (190)
.+.||||||+|.|.+ ...+.|+..++. .....+|++|| .|..++++++. |
T Consensus 546 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn-------------~~~~ld~allRpgR 612 (733)
T TIGR01243 546 APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATN-------------RPDILDPALLRPGR 612 (733)
T ss_pred CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCC-------------ChhhCCHhhcCCCc
Confidence 358999999998832 345666666663 22245566664 37789998874 8
Q ss_pred h-hheeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCC-CHHHHHHHHHHHHHHhhhcC-------------
Q psy18185 92 L-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRS-TLRYVVQLLTPAALTAKTNG------------- 155 (190)
Q Consensus 92 ~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~g------------- 155 (190)
| ..+.+++++.++..++++....+.. ++++ -+..+++.+ .| +-...-+++..|...+.++.
T Consensus 613 fd~~i~v~~Pd~~~R~~i~~~~~~~~~--~~~~~~l~~la~~t-~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~ 689 (733)
T TIGR01243 613 FDRLILVPPPDEEARKEIFKIHTRSMP--LAEDVDLEELAEMT-EGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGE 689 (733)
T ss_pred cceEEEeCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhccc
Confidence 8 5789999999999999987665443 3332 377788884 43 44444445566655443310
Q ss_pred -----CCcccHHHHHHHHH
Q psy18185 156 -----RTAISKQDILEVST 169 (190)
Q Consensus 156 -----~~~It~~~V~~~~~ 169 (190)
...||.++..+++.
T Consensus 690 ~~~~~~~~i~~~~f~~al~ 708 (733)
T TIGR01243 690 EEFLKDLKVEMRHFLEALK 708 (733)
T ss_pred ccccccCcccHHHHHHHHH
Confidence 12577788777774
No 176
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.95 E-value=7.1e-05 Score=65.09 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=84.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCC---CCCCCCChhHhhhh--
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDI---ISPHGIPLDLLDRL-- 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~---~~~~~l~~~l~SR~-- 92 (190)
.|.|||||+|.|+.+.|..|+++++++. .+.+|++|+ . +. .....+.++|..|+
T Consensus 101 gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~--------~-~l~~l~~~g~f~~dL~~~l~~ 171 (326)
T PRK11608 101 GGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATN--------A-DLPAMVAEGKFRADLLDRLAF 171 (326)
T ss_pred CCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCc--------h-hHHHHHHcCCchHHHHHhcCC
Confidence 4899999999999999999999998643 135666663 1 10 01234557888886
Q ss_pred hheeccCCCH--HHHHHHHHHH----HHhcC----CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy18185 93 LIIRTTPYNQ--KDMEAIIKLR----ANTEG----HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 93 ~~i~~~~ls~--~ei~~iL~~~----~~~~~----~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a 151 (190)
..+.++|+.+ +|+..++... +.+.| ..+++++++.+..+.+.|++|..-+.++.+...+
T Consensus 172 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 172 DVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 4688999987 5776665543 33333 3589999999999988999999999999987654
No 177
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5.6e-05 Score=71.38 Aligned_cols=115 Identities=21% Similarity=0.337 Sum_probs=78.4
Q ss_pred HHHHHHHcCccccCCeEEEEecCCCCCH----HHHHHHHHHhhc-------------cCC---CEEEEEecCCcccccCC
Q psy18185 16 VVNKYIDQGIAELVPGVLFIDEVHMLDL----ETFTYLHRALES-------------AIA---PIVIFATNRGRCLVRGT 75 (190)
Q Consensus 16 ~v~~~~~~~~~~~~~~Il~IDEi~~L~~----~~~~~L~~~~E~-------------~~~---~~iIlatn~~~~~~~~t 75 (190)
+++.....+.. -.|+.|||||.|+. +=.++|+.+++- +-. +.||.++|
T Consensus 407 IiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN--------- 474 (782)
T COG0466 407 IIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN--------- 474 (782)
T ss_pred HHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC---------
Confidence 34443333443 37999999999964 456788888751 111 23444443
Q ss_pred CCCCCCCCCChhHhhhhhheeccCCCHHHHHHHHHHHH-----Hh-----cCCCCCHHHHHHHHHh-cCCCCHHHHHHHH
Q psy18185 76 DDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRA-----NT-----EGHVLDDEALVTLSEI-GTRSTLRYVVQLL 144 (190)
Q Consensus 76 ~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~-----~~-----~~~~i~~e~l~~i~~~-a~~gdlR~ai~lL 144 (190)
+...+|.+|++|+.+|++..|+++|..+|-++.. +. ..+.++++++..|++. +-+.++|..=.-+
T Consensus 475 ----sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i 550 (782)
T COG0466 475 ----SLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREI 550 (782)
T ss_pred ----ccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHH
Confidence 3677999999999999999999999999888763 22 3567999999999988 2223555444444
Q ss_pred HH
Q psy18185 145 TP 146 (190)
Q Consensus 145 ~~ 146 (190)
..
T Consensus 551 ~k 552 (782)
T COG0466 551 AK 552 (782)
T ss_pred HH
Confidence 33
No 178
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00033 Score=59.10 Aligned_cols=142 Identities=21% Similarity=0.344 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhh---ccCCC-EEEEEecCCcccccCCCCCCCCCCCC-
Q psy18185 11 KEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALE---SAIAP-IVIFATNRGRCLVRGTDDIISPHGIP- 85 (190)
Q Consensus 11 ~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E---~~~~~-~iIlatn~~~~~~~~t~~~~~~~~l~- 85 (190)
+++...+..-..+|+. +-++++||+|.|+.+....|..+.+ ++.++ .+++++.. ...+--..|
T Consensus 116 e~~~~~L~al~~~g~r---~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp---------~L~~~lr~~~ 183 (269)
T COG3267 116 EQIDRELAALVKKGKR---PVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP---------KLRPRLRLPV 183 (269)
T ss_pred HHHHHHHHHHHHhCCC---CeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc---------ccchhhchHH
Confidence 3455555555555553 3588899999999988888877766 33333 46666631 000000111
Q ss_pred -hhHhhhhhh-eeccCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCccc
Q psy18185 86 -LDLLDRLLI-IRTTPYNQKDMEAIIKLRANTEGH---VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 160 (190)
Q Consensus 86 -~~l~SR~~~-i~~~~ls~~ei~~iL~~~~~~~~~---~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It 160 (190)
..+..||.+ |.++|++.++....|+.+.+..|. -++++++.++... ++|-+|..-+++..|...|-..|++.|+
T Consensus 184 l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~-sqg~P~lin~~~~~Al~~a~~a~~~~v~ 262 (269)
T COG3267 184 LRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEA-SQGIPRLINNLATLALDAAYSAGEDGVS 262 (269)
T ss_pred HHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHH-hccchHHHHHHHHHHHHHHHHcCCCccc
Confidence 367888987 999999999999999999876322 4789999999998 7886654444445555555556777887
Q ss_pred HHHHH
Q psy18185 161 KQDIL 165 (190)
Q Consensus 161 ~~~V~ 165 (190)
...++
T Consensus 263 ~a~~~ 267 (269)
T COG3267 263 EAEIK 267 (269)
T ss_pred hhhcc
Confidence 66554
No 179
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.86 E-value=0.0001 Score=66.28 Aligned_cols=49 Identities=16% Similarity=0.328 Sum_probs=39.2
Q ss_pred CChhHhhhh-hheeccCCCHHHHHHHHHH----HH-------HhcC--CCCCHHHHHHHHHhc
Q psy18185 84 IPLDLLDRL-LIIRTTPYNQKDMEAIIKL----RA-------NTEG--HVLDDEALVTLSEIG 132 (190)
Q Consensus 84 l~~~l~SR~-~~i~~~~ls~~ei~~iL~~----~~-------~~~~--~~i~~e~l~~i~~~a 132 (190)
+.|+|..|+ .++.|+|++.+++..|+.. .. +..| +.++++++++|++.|
T Consensus 295 f~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 295 LIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred hhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 578999999 5679999999999999973 11 2233 469999999999985
No 180
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.85 E-value=0.00069 Score=65.98 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=41.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC--------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~--------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
.|++||||++.|+...|.+|+.+||... .+.+|.++|-..-+-+.......-..+|++++||+
T Consensus 558 gGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRF 634 (915)
T PTZ00111 558 GGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRF 634 (915)
T ss_pred CCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhh
Confidence 4899999999999999999999998753 13566666532111100000111235688999998
No 181
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.84 E-value=7.6e-05 Score=67.21 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=89.8
Q ss_pred CeEEEEecCCCCCH------------HHHHHHHHHhhccCC-----------CEEEEEecCCcccccCCCCCCCCCCCCh
Q psy18185 30 PGVLFIDEVHMLDL------------ETFTYLHRALESAIA-----------PIVIFATNRGRCLVRGTDDIISPHGIPL 86 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------------~~~~~L~~~~E~~~~-----------~~iIlatn~~~~~~~~t~~~~~~~~l~~ 86 (190)
.||+||||+|.+.. ..|..|++++|.... ..||.++- | +...|..+.|
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GA--F-------~~~kp~DlIP 320 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGA--F-------HVSKPSDLIP 320 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCC--c-------CCCChhhccH
Confidence 48999999999942 589999999997432 12333332 1 1123677889
Q ss_pred hHhhhhh-heeccCCCHHHHHHHHHH----HH-------HhcCC--CCCHHHHHHHHHhcC-------CCCHHHHHHHHH
Q psy18185 87 DLLDRLL-IIRTTPYNQKDMEAIIKL----RA-------NTEGH--VLDDEALVTLSEIGT-------RSTLRYVVQLLT 145 (190)
Q Consensus 87 ~l~SR~~-~i~~~~ls~~ei~~iL~~----~~-------~~~~~--~i~~e~l~~i~~~a~-------~gdlR~ai~lL~ 145 (190)
+|..|+. ++.+++|+.+++.+||.. .. +.+|+ .++++|++.||+.|. +-++|..-.+++
T Consensus 321 El~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E 400 (443)
T PRK05201 321 ELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVME 400 (443)
T ss_pred HHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHH
Confidence 9999995 578999999999999943 11 22455 788999999999963 347787777777
Q ss_pred HHHHHh----hh-cCC-CcccHHHHHHHHH
Q psy18185 146 PAALTA----KT-NGR-TAISKQDILEVST 169 (190)
Q Consensus 146 ~~~~~a----~~-~g~-~~It~~~V~~~~~ 169 (190)
....-. .. .+. -.||.+.|...++
T Consensus 401 ~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 401 KLLEDISFEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred HHHHHHhccCCCCCCCEEEECHHHHHHHHH
Confidence 665321 11 111 2477777766553
No 182
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00068 Score=61.84 Aligned_cols=129 Identities=26% Similarity=0.333 Sum_probs=93.0
Q ss_pred CCeEEEEecCCCCC-----------HHHHHHHHHHhh---ccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh
Q psy18185 29 VPGVLFIDEVHMLD-----------LETFTYLHRALE---SAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~-----------~~~~~~L~~~~E---~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~ 92 (190)
.+.||||||+|.+. ....+.|+..+. ....+.+|.+|| .|..++++++. |+
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN-------------~p~~ld~a~lR~gRf 401 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATN-------------RPDDLDPALLRPGRF 401 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCC-------------CccccCHhhcccCcc
Confidence 35899999999992 246667777764 332244555664 38889999888 87
Q ss_pred -hheeccCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcC-CCcccHHHHHHHHH
Q psy18185 93 -LIIRTTPYNQKDMEAIIKLRANTEGHV-LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNG-RTAISKQDILEVST 169 (190)
Q Consensus 93 -~~i~~~~ls~~ei~~iL~~~~~~~~~~-i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g-~~~It~~~V~~~~~ 169 (190)
..+.+++++.++-.++++......+.. .++-.++.+++.+.+.+-.....++..|...+..+. ...||.++...+..
T Consensus 402 d~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~ 481 (494)
T COG0464 402 DRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALK 481 (494)
T ss_pred ceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 478999999999999999888755442 345567777776433355666777888887776665 56799999988876
Q ss_pred h
Q psy18185 170 L 170 (190)
Q Consensus 170 ~ 170 (190)
.
T Consensus 482 ~ 482 (494)
T COG0464 482 K 482 (494)
T ss_pred h
Confidence 4
No 183
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.83 E-value=9.6e-05 Score=59.19 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=60.5
Q ss_pred eEEEEecCCCCC------HHHHHHHHHHhhc---cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCC
Q psy18185 31 GVLFIDEVHMLD------LETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 101 (190)
Q Consensus 31 ~Il~IDEi~~L~------~~~~~~L~~~~E~---~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls 101 (190)
-||+|||+|.+. +.....|...++. .....+|+++..... .. ....-..++..|+..+.++|++
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~-~~------~~~~~~~~~~~~~~~~~l~~l~ 192 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSL-ME------EFLDDKSPLFGRFSHIELKPLS 192 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHH-HH------HTT-TTSTTTT---EEEE----
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHH-HH------HhhcccCccccccceEEEeeCC
Confidence 688899999998 5667777777777 222345555421000 00 0001123477888889999999
Q ss_pred HHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCCHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVL--DDEALVTLSEIGTRSTLRYV 140 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i--~~e~l~~i~~~a~~gdlR~a 140 (190)
.++..+.+....+.. ..+ +++.++.+... ++|.+++.
T Consensus 193 ~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~-~gG~P~~l 231 (234)
T PF01637_consen 193 KEEAREFLKELFKEL-IKLPFSDEDIEEIYSL-TGGNPRYL 231 (234)
T ss_dssp HHHHHHHHHHHHHCC-------HHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHHHHHHHHHHh-hcccCCHHHHHHHHHH-hCCCHHHH
Confidence 999999999887665 544 99999999999 58888764
No 184
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.83 E-value=0.00022 Score=64.30 Aligned_cols=127 Identities=21% Similarity=0.263 Sum_probs=89.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|.+||||+|.|+.+.|..|+++++++.- +.+|++|+.... .......+.++|..|+ ..+
T Consensus 233 ~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i 306 (469)
T PRK10923 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLE------QRVQEGKFREDLFHRLNVIRV 306 (469)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHH------HHHHcCCchHHHHHHhcceee
Confidence 47999999999999999999999987531 257777741000 0000223557888886 577
Q ss_pred eccCCCH--HHHHHHHHHHHH----hcCC---CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLRAN----TEGH---VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~~----~~~~---~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.++|+.+ +|+..++..-.+ ..|. .++++++..|..+.+.|++|..-+.++.+...+. ...|+.+++.
T Consensus 307 ~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~---~~~i~~~~l~ 382 (469)
T PRK10923 307 HLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA---GQEVLIQDLP 382 (469)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHCc
Confidence 8899887 466655544432 2232 4899999999999889999999999999886543 2357766654
No 185
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.82 E-value=0.00037 Score=62.40 Aligned_cols=132 Identities=26% Similarity=0.320 Sum_probs=95.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hhee
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIR 96 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~ 96 (190)
+||+.+||+..|+...+++|+.+++++.. ..|+++. |.|| .-..|-|.|++|+ ..+.
T Consensus 145 RGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvlig---------TmNP-EeGeLrpqLlDRfg~~v~ 214 (423)
T COG1239 145 RGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIG---------TMNP-EEGELRPQLLDRFGLEVD 214 (423)
T ss_pred CCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEe---------ecCc-cccccchhhHhhhcceee
Confidence 48999999999999999999999998632 1355544 3343 1356778899995 5565
Q ss_pred ccCCC-HHHHHHHHHHHHHh-----------------------------cCCCCCHHHHHHHHHhcCC---CCHHHHHHH
Q psy18185 97 TTPYN-QKDMEAIIKLRANT-----------------------------EGHVLDDEALVTLSEIGTR---STLRYVVQL 143 (190)
Q Consensus 97 ~~~ls-~~ei~~iL~~~~~~-----------------------------~~~~i~~e~l~~i~~~a~~---gdlR~ai~l 143 (190)
..+.+ .++-..|+.++.+- ..+.+++++..+++..|.+ .+.|-.+-+
T Consensus 215 ~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~ 294 (423)
T COG1239 215 THYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVV 294 (423)
T ss_pred ccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHH
Confidence 54443 34445555544331 3667889988888888533 236778888
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 144 LTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 144 L~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
.+.+..+|.-.|+..++.++++++..+-
T Consensus 295 ~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 295 VRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred HHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 8888888888999999999999988753
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00014 Score=69.63 Aligned_cols=118 Identities=25% Similarity=0.336 Sum_probs=85.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCccccc---CCCCCCC------------C
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVR---GTDDIIS------------P 81 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~---~t~~~~~------------~ 81 (190)
++.|+.+|||+..+++.+|.|+.+++++.- ++||++||-+...+. +.+.... .
T Consensus 593 PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~ 672 (786)
T COG0542 593 PYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELK 672 (786)
T ss_pred CCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHH
Confidence 468999999999999999999999997541 478999997633221 0000000 0
Q ss_pred CCCChhHhhhhh-heeccCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHhcC--CCCHHHHHHHHHH
Q psy18185 82 HGIPLDLLDRLL-IIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEIGT--RSTLRYVVQLLTP 146 (190)
Q Consensus 82 ~~l~~~l~SR~~-~i~~~~ls~~ei~~iL~~~~~~---------~~~~i~~e~l~~i~~~a~--~gdlR~ai~lL~~ 146 (190)
...+|+|+.|.- +|.|+|++.+++.+|+...... ..+++++++..+|+..+. ..+.|-.-+.++.
T Consensus 673 ~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 673 KHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred hhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 123689999996 8999999999999998776542 345789999999999962 3456666655554
No 187
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.78 E-value=0.00013 Score=66.98 Aligned_cols=128 Identities=23% Similarity=0.254 Sum_probs=85.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--he
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--II 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--~i 95 (190)
.|-||||||..|....|.-|+|++++..- +.+|.|||+....+ ..-..+-.||--|.- .+
T Consensus 341 gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~------i~~G~FReDLYYRLNV~~i 414 (560)
T COG3829 341 GGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM------IAEGTFREDLYYRLNVIPI 414 (560)
T ss_pred CCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHH------HhcCcchhhheeeeceeee
Confidence 38999999999999999999999996321 36888998531111 001122235555653 45
Q ss_pred eccCCCH--HHHHHHHHHHHH----h--cCCC-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLRAN----T--EGHV-LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~~----~--~~~~-i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.++|+-+ +|+.....+-.. . ..+. ++++++..+.++.+.|++|..-|+++++..+... ...|+.+++-
T Consensus 415 ~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~~--~~~I~~~~lp 491 (560)
T COG3829 415 TIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVES--DGLIDADDLP 491 (560)
T ss_pred cCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccCC--cceeehhhcc
Confidence 6667654 455544443333 2 3344 8899999999999999999999999999864432 2235555544
No 188
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.76 E-value=0.00073 Score=62.28 Aligned_cols=142 Identities=21% Similarity=0.217 Sum_probs=89.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC--------------CEEEEEecCCcccccCCCC-CCCC-------CCCChh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA--------------PIVIFATNRGRCLVRGTDD-IISP-------HGIPLD 87 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--------------~~iIlatn~~~~~~~~t~~-~~~~-------~~l~~~ 87 (190)
.|++||||++.++...++.|+..+|++.- ..+|.++|...+-.-+... .-+| ..++.+
T Consensus 295 gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~p 374 (506)
T PRK09862 295 NGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGP 374 (506)
T ss_pred CCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHh
Confidence 48999999999999999999999987541 2455566421000000000 0000 257779
Q ss_pred Hhhhh-hheeccCCCHH-------------HHH-HHHHHHHH--h---------------cCCCCCHHHHHHHHHhc--C
Q psy18185 88 LLDRL-LIIRTTPYNQK-------------DME-AIIKLRAN--T---------------EGHVLDDEALVTLSEIG--T 133 (190)
Q Consensus 88 l~SR~-~~i~~~~ls~~-------------ei~-~iL~~~~~--~---------------~~~~i~~e~l~~i~~~a--~ 133 (190)
+++|+ ..+.+++++.+ ++. .++..+.. . .-+.+++++...+.... .
T Consensus 375 lLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~ 454 (506)
T PRK09862 375 FLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHL 454 (506)
T ss_pred HHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99998 44677766432 232 22211111 0 11345556555444331 2
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 134 RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 134 ~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
+-+.|-...+|..|..+|-.+|+..|+.++|.+++.+-
T Consensus 455 ~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 455 GLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 34789999999999988988999999999999999854
No 189
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.74 E-value=0.00035 Score=62.60 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=85.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|+|||||+|.|+.+.|..|++++++.. .+.+|++|+.....+ .....+.+++..|+ ..+
T Consensus 238 ~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~------~~~g~~~~~l~~~l~~~~i 311 (457)
T PRK11361 238 EGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAM------VKEGTFREDLFYRLNVIHL 311 (457)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHH------HHcCCchHHHHHHhcccee
Confidence 4799999999999999999999998642 135777774210000 00123445666665 456
Q ss_pred eccCCCH--HHHHHHHHHH----HHhcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLR----ANTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~----~~~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.++|+.+ +|+..+...- +...+ ..+++++++.+..+.+.|++|..-+.++.+...+. ...|+.+++.
T Consensus 312 ~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~---~~~i~~~~l~ 387 (457)
T PRK11361 312 ILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS---GPIIFSEDLP 387 (457)
T ss_pred cCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC---CCcccHHHCh
Confidence 7788874 5555443322 22222 36899999999999889999999999999876542 2356666654
No 190
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.73 E-value=0.00019 Score=65.20 Aligned_cols=117 Identities=26% Similarity=0.322 Sum_probs=83.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--he
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--II 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--~i 95 (190)
.|.||||||..|..+.|.-|++++++..- +.+|.+||+- .+........-.+|-.|.- .+
T Consensus 236 GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d------L~~~v~~G~FReDLyyRLnV~~i 309 (464)
T COG2204 236 GGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD------LEEEVAAGRFREDLYYRLNVVPL 309 (464)
T ss_pred CceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC------HHHHHHcCCcHHHHHhhhcccee
Confidence 48999999999999999999999996431 3588888631 0001112233467777864 45
Q ss_pred eccCCCH--HHHHH----HHHHHHHhcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy18185 96 RTTPYNQ--KDMEA----IIKLRANTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 96 ~~~~ls~--~ei~~----iL~~~~~~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~ 152 (190)
+++|+-+ +||-- .|++.++..| ..++++++..+..+.+-|++|..-|.++++...+.
T Consensus 310 ~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 310 RLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred cCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC
Confidence 6777776 34433 3333344333 36999999999999899999999999999987664
No 191
>KOG0730|consensus
Probab=97.72 E-value=0.00037 Score=65.30 Aligned_cols=127 Identities=27% Similarity=0.274 Sum_probs=91.5
Q ss_pred CCeEEEEecCCCCCH-----------HHHHHHHHHhhcc---CCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh
Q psy18185 29 VPGVLFIDEVHMLDL-----------ETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~---~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~ 92 (190)
.+-|+|+||+|.+.. ...+.|++-|..- ..+.+|.|||+ |..|.+++.+ |+
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNR-------------pd~ID~ALlRPGRl 593 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNR-------------PDMIDPALLRPGRL 593 (693)
T ss_pred CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCC-------------hhhcCHHHcCCccc
Confidence 458999999999943 2455555555432 12566777763 7789999999 66
Q ss_pred -hheeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhc--CCCcccHHHHHHHH
Q psy18185 93 -LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTN--GRTAISKQDILEVS 168 (190)
Q Consensus 93 -~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~--g~~~It~~~V~~~~ 168 (190)
+++.+++++.+--.+||+..+++. .++++ -++.|++.+...+-.....+++.|+..|.++ .-..|+.++..+++
T Consensus 594 D~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al 671 (693)
T KOG0730|consen 594 DRIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEAL 671 (693)
T ss_pred ceeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 788999999999999999888664 45555 5778888753445577788899998777653 23467788887777
Q ss_pred Hh
Q psy18185 169 TL 170 (190)
Q Consensus 169 ~~ 170 (190)
..
T Consensus 672 ~~ 673 (693)
T KOG0730|consen 672 KA 673 (693)
T ss_pred Hh
Confidence 53
No 192
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.69 E-value=0.00019 Score=64.49 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=76.9
Q ss_pred CCeEEEEecCCCCCH--------------HHHHHHHHHhhccC--------C------CEEEEEecCCcc----------
Q psy18185 29 VPGVLFIDEVHMLDL--------------ETFTYLHRALESAI--------A------PIVIFATNRGRC---------- 70 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~--------~------~~iIlatn~~~~---------- 70 (190)
.++||+|||+|.+++ +.|+.|++++|... . .++|.++|-.+.
T Consensus 181 ~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~ 260 (413)
T TIGR00382 181 QKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEK 260 (413)
T ss_pred ccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHH
Confidence 357999999999976 69999999997321 0 246666665211
Q ss_pred ----ccc----CC--CCCC-C----------------CCCCChhHhhhh-hheeccCCCHHHHHHHHHHH----HH----
Q psy18185 71 ----LVR----GT--DDII-S----------------PHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLR----AN---- 114 (190)
Q Consensus 71 ----~~~----~t--~~~~-~----------------~~~l~~~l~SR~-~~i~~~~ls~~ei~~iL~~~----~~---- 114 (190)
++. |. +... . -+++.|+|..|+ .++.|+|++.+++.+|+... .+
T Consensus 261 i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~ 340 (413)
T TIGR00382 261 IIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQA 340 (413)
T ss_pred HHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 10 0000 0 123568999999 56789999999999998752 22
Q ss_pred -----hcCCCCCHHHHHHHHHhcCC--CCHHHHHHHHHHH
Q psy18185 115 -----TEGHVLDDEALVTLSEIGTR--STLRYVVQLLTPA 147 (190)
Q Consensus 115 -----~~~~~i~~e~l~~i~~~a~~--gdlR~ai~lL~~~ 147 (190)
.-.+.++++++++|++.|.. .++|-.-.+++..
T Consensus 341 ~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~ 380 (413)
T TIGR00382 341 LFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGL 380 (413)
T ss_pred HhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHh
Confidence 12457899999999998522 3445444444443
No 193
>KOG0728|consensus
Probab=97.61 E-value=0.00081 Score=57.15 Aligned_cols=128 Identities=21% Similarity=0.210 Sum_probs=83.3
Q ss_pred CCeEEEEecCCCCC-----------HHHHHHHHHHhhc------cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 29 VPGVLFIDEVHMLD-----------LETFTYLHRALES------AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 29 ~~~Il~IDEi~~L~-----------~~~~~~L~~~~E~------~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
.+.|+|+||+|.+. .+.|...+.++.. .....+|+|||++ .-+.|+++..
T Consensus 240 apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri-------------dild~allrp 306 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI-------------DILDPALLRP 306 (404)
T ss_pred CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc-------------ccccHhhcCC
Confidence 36899999999993 3677777776653 2225799999852 2355666655
Q ss_pred h---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 92 L---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG--TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 92 ~---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
. ..++|+|++++.-.++|+.+..+.++.=.-+ +..|++.. +.| -..-..+..|.-+|.++-+-.+|-++..-
T Consensus 307 gridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~-l~kiaekm~gasg--aevk~vcteagm~alrerrvhvtqedfem 383 (404)
T KOG0728|consen 307 GRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN-LRKIAEKMPGASG--AEVKGVCTEAGMYALRERRVHVTQEDFEM 383 (404)
T ss_pred CcccccccCCCCCHHHHHHHHHHhhhhhchhcccC-HHHHHHhCCCCcc--chhhhhhhhhhHHHHHHhhccccHHHHHH
Confidence 4 4689999999999999998887643321111 34455441 122 22233466666677776677788888776
Q ss_pred HHHhcc
Q psy18185 167 VSTLFL 172 (190)
Q Consensus 167 ~~~~f~ 172 (190)
+.+...
T Consensus 384 av~kvm 389 (404)
T KOG0728|consen 384 AVAKVM 389 (404)
T ss_pred HHHHHH
Confidence 665443
No 194
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.002 Score=56.20 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=91.5
Q ss_pred eEEEEecCCCCC-HHHHHHHHHHhhccC-CCEEEEEe-cCCcccccCCCCCCCCCCCChhHhhh--hhheeccCCCHHHH
Q psy18185 31 GVLFIDEVHMLD-LETFTYLHRALESAI-APIVIFAT-NRGRCLVRGTDDIISPHGIPLDLLDR--LLIIRTTPYNQKDM 105 (190)
Q Consensus 31 ~Il~IDEi~~L~-~~~~~~L~~~~E~~~-~~~iIlat-n~~~~~~~~t~~~~~~~~l~~~l~SR--~~~i~~~~ls~~ei 105 (190)
.++.|...+... .+....+......++ ...++++. ++ .+ ........+.+= +.++...|++.+++
T Consensus 76 ~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~k-------l~---~~~~~~k~~~~~~~~~~~~~~~~~~~~l 145 (334)
T COG1466 76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNK-------LD---KAKKLTKWLKKLAKAVVVECKPLDEAEL 145 (334)
T ss_pred eeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCC-------cc---hHHHHHHHHHHhccCceEecCCCCHHHH
Confidence 588899888874 444445555555544 33333333 11 00 111111122221 45789999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccCh
Q psy18185 106 EAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDA 174 (190)
Q Consensus 106 ~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~~ 174 (190)
.+++..++++.|+.++++++++++.. .+||++.+-+=++....++. ++.||.++|..+..-+...
T Consensus 146 ~~~i~~~~~~~~l~i~~~a~~~L~~~-~~~nl~~i~~Ei~KL~l~~~---~~~I~~~~V~~~v~~~~~~ 210 (334)
T COG1466 146 PQWIKKRAKELGLKIDQEAIQLLLEA-LGGNLLAIAQEIEKLALYAG---DKEITLEDVEEVVSDVAEF 210 (334)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-hCCcHHHHHHHHHHHHHhCC---CCcCCHHHHHHHHhccccC
Confidence 99999999999999999999999999 79999999999999887753 3389999999988544433
No 195
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.59 E-value=0.00014 Score=63.49 Aligned_cols=144 Identities=22% Similarity=0.238 Sum_probs=81.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC--------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA--------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LI 94 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~ 94 (190)
.||.||||.+.+..+....|+.+||.+.- +.++.++|-...+.+........-.+|++++||+ ++
T Consensus 122 ~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 122 GGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp TSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred CceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 48999999999999999999999997431 3577777643211111111111124678899997 23
Q ss_pred ee-ccCCC----------------------------------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc------C
Q psy18185 95 IR-TTPYN----------------------------------QKDMEAIIKLRANTEGHVLDDEALVTLSEIG------T 133 (190)
Q Consensus 95 i~-~~~ls----------------------------------~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a------~ 133 (190)
|. ..+.+ .+.++..+.+.-......+++++.+.|.+.= .
T Consensus 202 f~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~ 281 (331)
T PF00493_consen 202 FLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKES 281 (331)
T ss_dssp ECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCH
T ss_pred EEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccc
Confidence 32 33333 2223333333322455578899988887761 0
Q ss_pred -------CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccC
Q psy18185 134 -------RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLD 173 (190)
Q Consensus 134 -------~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~ 173 (190)
.-++|..-.++..+-.+|+-..+..||.+||..+..+|..
T Consensus 282 ~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 282 KSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp HCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 0134444455555556777788889999999999988753
No 196
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.52 E-value=0.00049 Score=50.46 Aligned_cols=69 Identities=35% Similarity=0.404 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCccccCCeEEEEecCCCCCHHH-----------HHHHHHHhhccCC----CEEEEEecCCcccccCCC
Q psy18185 12 EINKVVNKYIDQGIAELVPGVLFIDEVHMLDLET-----------FTYLHRALESAIA----PIVIFATNRGRCLVRGTD 76 (190)
Q Consensus 12 ~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~-----------~~~L~~~~E~~~~----~~iIlatn~~~~~~~~t~ 76 (190)
.+++.+.+....+ .+.|++|||+|.+.... .+.|+..++.... ..+|++||
T Consensus 45 ~i~~~~~~~~~~~----~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn---------- 110 (132)
T PF00004_consen 45 KIRDFFKKAKKSA----KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTN---------- 110 (132)
T ss_dssp HHHHHHHHHHHTS----TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEES----------
T ss_pred ccccccccccccc----cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeC----------
Confidence 5556666543333 25899999999997765 8888999987655 35666664
Q ss_pred CCCCCCCCChhHh-hhhh-heec
Q psy18185 77 DIISPHGIPLDLL-DRLL-IIRT 97 (190)
Q Consensus 77 ~~~~~~~l~~~l~-SR~~-~i~~ 97 (190)
.+..++++++ +||. .+.+
T Consensus 111 ---~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 111 ---SPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp ---SGGGSCHHHHSTTSEEEEEE
T ss_pred ---ChhhCCHhHHhCCCcEEEEc
Confidence 2678999999 9984 3444
No 197
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00098 Score=63.05 Aligned_cols=130 Identities=24% Similarity=0.233 Sum_probs=92.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC----------------------CEEEEEecCCcccccCCCCCCCCCCCChh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA----------------------PIVIFATNRGRCLVRGTDDIISPHGIPLD 87 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~----------------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~ 87 (190)
.|||||||+..|....++.+++.+++... ..+|+++|+ . ....+.+.
T Consensus 226 gGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~-------~----~l~~l~~~ 294 (647)
T COG1067 226 GGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNR-------E----DLEDLHEP 294 (647)
T ss_pred CcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCH-------H----HHHhhccc
Confidence 48999999999998888888888876511 146777753 1 24455556
Q ss_pred Hhhhhhh----eecc---CCCHHHHHHHHHHHHH----h-cCCCCCHHHHHHHHHhcCC---------CCHHHHHHHHHH
Q psy18185 88 LLDRLLI----IRTT---PYNQKDMEAIIKLRAN----T-EGHVLDDEALVTLSEIGTR---------STLRYVVQLLTP 146 (190)
Q Consensus 88 l~SR~~~----i~~~---~ls~~ei~~iL~~~~~----~-~~~~i~~e~l~~i~~~a~~---------gdlR~ai~lL~~ 146 (190)
.+||-.- ..|+ |.++++-...+...+. . .-..++.+|+..|.+.+.+ -.+|...+++..
T Consensus 295 ~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~ 374 (647)
T COG1067 295 DRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVRE 374 (647)
T ss_pred CHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHH
Confidence 6666433 2333 4455555555544433 2 3347899999998887521 267999999999
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 147 AALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 147 ~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
|+.+|..+|+.-||.++|.+++..
T Consensus 375 A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 375 AGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred hhHHHhcCCcccCcHHHHHHHHHh
Confidence 999999989999999999999865
No 198
>KOG1968|consensus
Probab=97.51 E-value=0.00063 Score=66.23 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=85.0
Q ss_pred CeEEEEecCCCCCH---HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDL---ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~---~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
..||++||+|.+.. ..+..+..+.+....|+++.++. .+. .-+.++.+-|..++|..++.+.+.
T Consensus 429 ~~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cnd--------r~~-----p~sr~~~~~~~~l~f~kP~~~~i~ 495 (871)
T KOG1968|consen 429 HFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCND--------RNL-----PKSRALSRACSDLRFSKPSSELIR 495 (871)
T ss_pred eeEEEEeccccccchhhhhHHHHHHHHHhccCCeEEEecC--------CCC-----ccccchhhhcceeeecCCcHHHHH
Confidence 45999999999965 78888888888665575555442 221 112245555899999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
..|...|..+++.|+++.++-+.+. ++||+|..++.|+...
T Consensus 496 ~ri~si~~se~~ki~~~~l~~~s~~-~~~DiR~~i~~lq~~~ 536 (871)
T KOG1968|consen 496 SRIMSICKSEGIKISDDVLEEISKL-SGGDIRQIIMQLQFWS 536 (871)
T ss_pred hhhhhhhcccceecCcHHHHHHHHh-cccCHHHHHHHHhhhh
Confidence 9999999999999999999999999 6999999999998773
No 199
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.50 E-value=0.0028 Score=55.00 Aligned_cols=131 Identities=25% Similarity=0.328 Sum_probs=85.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEe-cCCcccccCCCCCCCCCCCChhHhhhh-hheec
Q psy18185 32 VLFIDEVHMLDLETFTYLHRALESAI------------APIVIFAT-NRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRT 97 (190)
Q Consensus 32 Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlat-n~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~ 97 (190)
|+++|||++..+..|++|+.++++.. .+-++++| | ......-+.+|.++++|| ..+.+
T Consensus 115 ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~N--------p~e~~g~~~l~eA~ldRf~~~~~v 186 (329)
T COG0714 115 ILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN--------PGEYEGTYPLPEALLDRFLLRIYV 186 (329)
T ss_pred EEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccC--------ccccCCCcCCCHHHHhhEEEEEec
Confidence 99999999999999999999999711 13455555 3 101111234688999999 66777
Q ss_pred cCCCHHHHHHHHHHHHH--------------------------hcCCCCCHHHHHHHHHhcC---CC-------CHHHHH
Q psy18185 98 TPYNQKDMEAIIKLRAN--------------------------TEGHVLDDEALVTLSEIGT---RS-------TLRYVV 141 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~--------------------------~~~~~i~~e~l~~i~~~a~---~g-------dlR~ai 141 (190)
..+..++-..++..+.. ..++.+++++..++....+ .. +.|...
T Consensus 187 ~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~ 266 (329)
T COG0714 187 DYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASL 266 (329)
T ss_pred CCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHH
Confidence 77734433333322211 0256777888888766621 11 367777
Q ss_pred HHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 142 QLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 142 ~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
.++..+...+...|+..+..++++.....
T Consensus 267 ~~~~~~~~~a~~~~~~~~~~~dv~~~~~~ 295 (329)
T COG0714 267 ALLAALRALALLDGRDAVIPDDVKALAEP 295 (329)
T ss_pred HHHHHHHhhhhhcCccccCHHHHHHHhhh
Confidence 77777777777788888888888776643
No 200
>KOG2004|consensus
Probab=97.48 E-value=0.00093 Score=63.47 Aligned_cols=103 Identities=24% Similarity=0.324 Sum_probs=73.2
Q ss_pred eEEEEecCCCCCH----HHHHHHHHHhhc-------------cCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 31 GVLFIDEVHMLDL----ETFTYLHRALES-------------AIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 31 ~Il~IDEi~~L~~----~~~~~L~~~~E~-------------~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.++.|||||.+.. +=.++|+.+++- |.. +.||.++| ....||++|++
T Consensus 507 PliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN-------------~idtIP~pLlD 573 (906)
T KOG2004|consen 507 PLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN-------------VIDTIPPPLLD 573 (906)
T ss_pred ceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc-------------ccccCChhhhh
Confidence 6899999999964 345677777751 111 23444443 25579999999
Q ss_pred hhhheeccCCCHHHHHHHHHHHHH----------hcCCCCCHHHHHHHHHh-cCCCCHHHHHHHHHH
Q psy18185 91 RLLIIRTTPYNQKDMEAIIKLRAN----------TEGHVLDDEALVTLSEI-GTRSTLRYVVQLLTP 146 (190)
Q Consensus 91 R~~~i~~~~ls~~ei~~iL~~~~~----------~~~~~i~~e~l~~i~~~-a~~gdlR~ai~lL~~ 146 (190)
|+.+|++..|..+|...|-.+... .+.+.++++++..|.++ |-+.++|..-.-++.
T Consensus 574 RMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 574 RMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEK 640 (906)
T ss_pred hhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999888777642 25678999999888877 323456655544443
No 201
>KOG0727|consensus
Probab=97.46 E-value=0.002 Score=54.84 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=80.4
Q ss_pred CCeEEEEecCCCC-----------CHHHHHHHHHHhhccCC------CEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 29 VPGVLFIDEVHML-----------DLETFTYLHRALESAIA------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 29 ~~~Il~IDEi~~L-----------~~~~~~~L~~~~E~~~~------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
.+.|+||||+|.+ +.+.|..|..++..-.+ +.+|++||+ ...+.|+++..
T Consensus 248 apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnr-------------adtldpallrp 314 (408)
T KOG0727|consen 248 APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNR-------------ADTLDPALLRP 314 (408)
T ss_pred CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCc-------------ccccCHhhcCC
Confidence 3689999999998 34788888887764322 579999985 34566666655
Q ss_pred h---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 92 L---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 92 ~---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
. ..++|+-.+..+.+-+..-++.+.++.=+-+.-.++++- ..-+--..-.+++.++.+|.+.++--|...+..++.
T Consensus 315 grldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rp-dkis~adi~aicqeagm~avr~nryvvl~kd~e~ay 393 (408)
T KOG0727|consen 315 GRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARP-DKISGADINAICQEAGMLAVRENRYVVLQKDFEKAY 393 (408)
T ss_pred ccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCc-cccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHH
Confidence 4 478888777777777776666665432222222333322 111112223357778777877777777777777766
Q ss_pred H
Q psy18185 169 T 169 (190)
Q Consensus 169 ~ 169 (190)
.
T Consensus 394 ~ 394 (408)
T KOG0727|consen 394 K 394 (408)
T ss_pred H
Confidence 4
No 202
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.44 E-value=0.0017 Score=61.71 Aligned_cols=116 Identities=28% Similarity=0.347 Sum_probs=81.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|+||||||+.|..+.|..|++++++.. .+.+|.+|+.... .......+..++..|. ..+
T Consensus 471 ~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~~L~~~l~~~~i 544 (686)
T PRK15429 471 KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK------KMVADREFRSDLYYRLNVFPI 544 (686)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHH------HHHHcCcccHHHHhccCeeEE
Confidence 4899999999999999999999998642 1357777742000 0001122334555564 567
Q ss_pred eccCCCH--HHHHHHHHHH----HHhcCC---CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy18185 96 RTTPYNQ--KDMEAIIKLR----ANTEGH---VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~----~~~~~~---~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a 151 (190)
.++|+.+ +|+..++..- +.+.|. .+++++++.+..+.+.|++|..-+.++.+...+
T Consensus 545 ~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 545 HLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred eCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 8999987 5665555433 332232 489999999999988999999999999998654
No 203
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.41 E-value=0.0033 Score=58.03 Aligned_cols=73 Identities=25% Similarity=0.262 Sum_probs=53.2
Q ss_pred CeEEEEecCCCCCH------------HHHHHHHHHhhccC---CCEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh
Q psy18185 30 PGVLFIDEVHMLDL------------ETFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------------~~~~~L~~~~E~~~---~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~ 92 (190)
+.|+||||+|.+.. ...+.|+..++.-. ...+|++|| .+..++|++++ |+
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN-------------~~d~LDpALlRpGRf 356 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN-------------REDMIDPAILRPGRL 356 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC-------------ChhhCCHhhcCcccc
Confidence 57999999999832 12355666665322 245666665 37789999987 65
Q ss_pred -hheeccCCCHHHHHHHHHHHHHh
Q psy18185 93 -LIIRTTPYNQKDMEAIIKLRANT 115 (190)
Q Consensus 93 -~~i~~~~ls~~ei~~iL~~~~~~ 115 (190)
..|.|++++.++..++++.+...
T Consensus 357 D~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 357 DVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ceEEEeCCCCHHHHHHHHHHHhhc
Confidence 45999999999999999987643
No 204
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.38 E-value=0.00092 Score=61.13 Aligned_cols=116 Identities=28% Similarity=0.269 Sum_probs=80.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-------C-----CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhh--e
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-------A-----PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI--I 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-------~-----~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~--i 95 (190)
.|-||+|||..|..+.|..|+|+++++. . +.+|.|||+-..++. .-...-.|+--|.-+ +
T Consensus 318 GGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V------~~G~FRaDLYyRLsV~Pl 391 (550)
T COG3604 318 GGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMV------RDGEFRADLYYRLSVFPL 391 (550)
T ss_pred CCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHH------HcCcchhhhhhccccccc
Confidence 4899999999999999999999998643 1 468999986421110 011223455555533 4
Q ss_pred eccCCCH--HHHH---HH-HHHHHHh---cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy18185 96 RTTPYNQ--KDME---AI-IKLRANT---EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 96 ~~~~ls~--~ei~---~i-L~~~~~~---~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a 151 (190)
.++|+-+ +|+- .. +++.... ..+.++++|++.+.+...-|++|..-|.+++++..|
T Consensus 392 ~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 392 ELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 5666654 2332 22 2222222 245799999999999988999999999999999876
No 205
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00069 Score=59.54 Aligned_cols=133 Identities=21% Similarity=0.331 Sum_probs=89.1
Q ss_pred CeEEEEecCCCCCH------------HHHHHHHHHhhccCC-----C----EEEEEecCCcccccCCCCCCCCCCCChhH
Q psy18185 30 PGVLFIDEVHMLDL------------ETFTYLHRALESAIA-----P----IVIFATNRGRCLVRGTDDIISPHGIPLDL 88 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------------~~~~~L~~~~E~~~~-----~----~iIlatn~~~~~~~~t~~~~~~~~l~~~l 88 (190)
.||+||||+|.+.. ..|.-|+.++|.+.. | ++++++. +.| ...-|+.+.|.|
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIas-GAF------h~sKPSDLiPEL 323 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIAS-GAF------HVAKPSDLIPEL 323 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEec-Cce------ecCChhhcChhh
Confidence 38999999999832 578899999996432 1 3333331 111 222478889999
Q ss_pred hhhh-hheeccCCCHHHHHHHHHHH-----------HHhcCC--CCCHHHHHHHHHhcC-------CCCHHHHHHHHHHH
Q psy18185 89 LDRL-LIIRTTPYNQKDMEAIIKLR-----------ANTEGH--VLDDEALVTLSEIGT-------RSTLRYVVQLLTPA 147 (190)
Q Consensus 89 ~SR~-~~i~~~~ls~~ei~~iL~~~-----------~~~~~~--~i~~e~l~~i~~~a~-------~gdlR~ai~lL~~~ 147 (190)
..|+ ..+++.++|.+++..||..- .+.+|+ .++++++..||+.|. +=++|..-..|+..
T Consensus 324 QGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 324 QGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred cCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 9999 46899999999999998643 122554 689999999999962 23567766666555
Q ss_pred H----HHhhhcCCC--cccHHHHHHHHH
Q psy18185 148 A----LTAKTNGRT--AISKQDILEVST 169 (190)
Q Consensus 148 ~----~~a~~~g~~--~It~~~V~~~~~ 169 (190)
. +-|...+.. .|+.+-|.+-++
T Consensus 404 LediSFeA~d~~g~~v~Id~~yV~~~l~ 431 (444)
T COG1220 404 LEDISFEAPDMSGQKVTIDAEYVEEKLG 431 (444)
T ss_pred HHHhCccCCcCCCCeEEEcHHHHHHHHH
Confidence 4 333322222 366667766653
No 206
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.21 E-value=0.00095 Score=62.25 Aligned_cols=116 Identities=26% Similarity=0.320 Sum_probs=83.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-----------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhee
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-----------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIR 96 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-----------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i~ 96 (190)
.|.+|+|||..|..+.|..|+++++++.. ..+|-||++-...+. ....+-.++--|. .+|+
T Consensus 408 gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv------~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 408 GGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLV------EQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred CCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHH------HcCCchHHHHHHhcCeeec
Confidence 47999999999999999999999998643 247777764211110 1123345666665 5778
Q ss_pred ccCCCHH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy18185 97 TTPYNQK-----DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 97 ~~~ls~~-----ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~ 152 (190)
++|+.+- .+..++++... .++.++++++..|..+.+.|++|...+.++.++.++.
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred cCchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 8888763 23333333322 5678999999999999889999999999999987663
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.11 E-value=0.019 Score=55.08 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=62.3
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhccC--C-CEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh-
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALESAI--A-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL- 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~~--~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~- 92 (190)
+.||||||+|.+. ...++.|+..++.-. . ..+|++|| .|..+++.+++ |+
T Consensus 272 p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn-------------~~~~ld~al~r~gRfd 338 (733)
T TIGR01243 272 PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN-------------RPDALDPALRRPGRFD 338 (733)
T ss_pred CcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC-------------ChhhcCHHHhCchhcc
Confidence 4799999999884 246677888887432 2 34444554 36778888887 55
Q ss_pred hheeccCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHhcCCC
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRANTEGHVLD-DEALVTLSEIGTRS 135 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~~~~~~~i~-~e~l~~i~~~a~~g 135 (190)
..+.++.++.++..++|+...... .+. +..+..+++.+ .|
T Consensus 339 ~~i~i~~P~~~~R~~Il~~~~~~~--~l~~d~~l~~la~~t-~G 379 (733)
T TIGR01243 339 REIVIRVPDKRARKEILKVHTRNM--PLAEDVDLDKLAEVT-HG 379 (733)
T ss_pred EEEEeCCcCHHHHHHHHHHHhcCC--CCccccCHHHHHHhC-CC
Confidence 568899999999999998665443 332 33477788773 44
No 208
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.09 E-value=0.0088 Score=53.38 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=59.5
Q ss_pred CeEEEEecCCCCCH-----------H-HHHHHHHHhhcc--------------CC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 30 PGVLFIDEVHMLDL-----------E-TFTYLHRALESA--------------IA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----------~-~~~~L~~~~E~~--------------~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
+-||||||+|.+.. . ....|+..++.+ .. +.+|.+|| .|.
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTN-------------rpd 279 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGN-------------DFS 279 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCC-------------Ccc
Confidence 57999999998843 1 123556555431 12 34455554 288
Q ss_pred CCChhHhh--hhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q psy18185 83 GIPLDLLD--RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG 132 (190)
Q Consensus 83 ~l~~~l~S--R~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a 132 (190)
.|+|+|+. |+-.+ +..++.++..+||+...+..+ ++.+.+..|+...
T Consensus 280 ~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f 328 (413)
T PLN00020 280 TLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTF 328 (413)
T ss_pred cCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcC
Confidence 99999998 66443 457899999999998887765 4566777777773
No 209
>KOG0734|consensus
Probab=97.06 E-value=0.0062 Score=56.50 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=80.9
Q ss_pred CeEEEEecCCCCCH-----HH---HHHHHHHhhccC------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---
Q psy18185 30 PGVLFIDEVHMLDL-----ET---FTYLHRALESAI------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--- 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----~~---~~~L~~~~E~~~------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--- 92 (190)
+-||||||+|.... +. -..|+.++-+-. ++++|.|||. |..+.++|....
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf-------------pe~LD~AL~RPGRFD 463 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF-------------PEALDKALTRPGRFD 463 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC-------------hhhhhHHhcCCCccc
Confidence 57999999999942 22 223444443211 2566777762 677777776654
Q ss_pred hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
..+.++.++-.--.+||.....+. ..++++=-.++.++..| +--..-|+.-.|+..|-..|...+|..++.++-
T Consensus 464 ~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~ak 538 (752)
T KOG0734|consen 464 RHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAK 538 (752)
T ss_pred eeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhh
Confidence 468888888888899999888653 33333322233332233 223456778888887777899999999988765
No 210
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0086 Score=56.98 Aligned_cols=145 Identities=23% Similarity=0.228 Sum_probs=84.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC--------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-h
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA--------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-L 93 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~ 93 (190)
..||.+|||.|.|+....++|..+||.+.- +.++.|+|-.+-+-+....+..--.+|++|+||+ +
T Consensus 383 D~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDL 462 (682)
T COG1241 383 DGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDL 462 (682)
T ss_pred cCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCe
Confidence 358999999999999999999999997542 1245555532211111111111224578999997 2
Q ss_pred he-eccCCCH---HHHHH-HHHHH-------------------------------HHh-cCCCCCHHHHHHHHHhc----
Q psy18185 94 II-RTTPYNQ---KDMEA-IIKLR-------------------------------ANT-EGHVLDDEALVTLSEIG---- 132 (190)
Q Consensus 94 ~i-~~~~ls~---~ei~~-iL~~~-------------------------------~~~-~~~~i~~e~l~~i~~~a---- 132 (190)
+| -...++. +++.+ +|..+ |++ --..+++++.+.|.+.=
T Consensus 463 ifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~R 542 (682)
T COG1241 463 IFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMR 542 (682)
T ss_pred eEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhh
Confidence 22 2222222 22222 22211 111 11368999999988771
Q ss_pred CC-----------CCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccC
Q psy18185 133 TR-----------STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLD 173 (190)
Q Consensus 133 ~~-----------gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~ 173 (190)
.. -..|+.-.++..+-.+|+-+=+..++.++|.+|..++-.
T Consensus 543 k~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~ 594 (682)
T COG1241 543 KKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDF 594 (682)
T ss_pred hccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 00 124555445555555666566678999999999977543
No 211
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.89 E-value=0.0029 Score=46.07 Aligned_cols=60 Identities=38% Similarity=0.377 Sum_probs=42.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhcc-------CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccC
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESA-------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTP 99 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~-------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ 99 (190)
..+++++||+|.+.......+...++.. ....+|++++ . . ....+++.+++|| ..+.++|
T Consensus 84 ~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~--------~-~--~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATN--------R-P--LLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred CCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecC--------c-c--ccCCcChhHHhhhccEeecCC
Confidence 3589999999999877777777777764 2356677774 1 1 1125677899999 6666654
No 212
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.88 E-value=0.03 Score=51.55 Aligned_cols=102 Identities=14% Similarity=0.244 Sum_probs=72.8
Q ss_pred CeEEEEecCCCC--CHHHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 30 PGVLFIDEVHML--DLETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 30 ~~Il~IDEi~~L--~~~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
++|+++-|.|.+ ++.....|..+.... .+..+|+.+. ...+|++|..=+.++.|+-++.+|+
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~~--------------~~~~p~el~~~~~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIAS--------------ELNIPKELKDLITVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEcC--------------CCCCCHHHHhceeEEeecCcCHHHH
Confidence 579999999999 333334443333321 1245666562 2457888888888999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHH
Q psy18185 106 EAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTP 146 (190)
Q Consensus 106 ~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~ 146 (190)
..+|...+...++.++++.++.+++.+ .| +.-.+-+.+..
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~-~gls~~~~~~~~~~ 188 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRAC-QGLSLERIRRVLSK 188 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 999988887778899999999999995 54 45444444443
No 213
>KOG0737|consensus
Probab=96.87 E-value=0.0067 Score=53.62 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=69.7
Q ss_pred cCCeEEEEecCCCCC-------HHHHHHHHHH-h------hccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 28 LVPGVLFIDEVHMLD-------LETFTYLHRA-L------ESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~-------~~~~~~L~~~-~------E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
+.+-|+||||+|.+. .++...+..- + -.... +.+++||| .|+.+..++.+|
T Consensus 185 l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN-------------RP~DlDeAiiRR 251 (386)
T KOG0737|consen 185 LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN-------------RPFDLDEAIIRR 251 (386)
T ss_pred cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC-------------CCccHHHHHHHh
Confidence 457899999999984 2322222211 1 11112 34555665 388999999999
Q ss_pred h-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy18185 92 L-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAAL 149 (190)
Q Consensus 92 ~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~ 149 (190)
+ ..|.+.-++.++-.+||+-..+.++++ ++=-+..+++.+.+.+-+...+++..|+.
T Consensus 252 ~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 252 LPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred CcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 5 788888899999999999998887664 22225667777422255566666655554
No 214
>KOG0730|consensus
Probab=96.83 E-value=0.02 Score=54.04 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=77.9
Q ss_pred CeEEEEecCCCCCH----------HHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhh-hh-hhe
Q psy18185 30 PGVLFIDEVHMLDL----------ETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-RL-LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~----------~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-R~-~~i 95 (190)
+.++||||+|.+.+ .....|+.+++.-.+ -++++++ ++ .|..+.+.+|. |+ ..+
T Consensus 279 psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~a---------tn---rp~sld~alRRgRfd~ev 346 (693)
T KOG0730|consen 279 PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAA---------TN---RPDSLDPALRRGRFDREV 346 (693)
T ss_pred CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEe---------cC---CccccChhhhcCCCccee
Confidence 67999999999964 456677777776542 3455544 32 38899999996 76 567
Q ss_pred eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhh
Q psy18185 96 RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAKT 153 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~ 153 (190)
.+.-++..+-.++|+...++.+.. ++..+..++..+ .| --..+-.++..++..+.+
T Consensus 347 ~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~t-hGyvGaDL~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 347 EIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVST-HGYVGADLAALCREASLQATR 403 (693)
T ss_pred eecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHc-cchhHHHHHHHHHHHHHHHhh
Confidence 888899999999999999888765 677788888884 54 223444455555544433
No 215
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.80 E-value=0.0074 Score=52.79 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=62.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCC-------------CEE--EEEecCCcccccCC--CCCCCCCCCChhHhhhhh
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIA-------------PIV--IFATNRGRCLVRGT--DDIISPHGIPLDLLDRLL 93 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~-------------~~i--Ilatn~~~~~~~~t--~~~~~~~~l~~~l~SR~~ 93 (190)
.++++||++...++.++.|+.++|.... |-| |.+.|-.. .|. -.+..-..++.++++|+.
T Consensus 136 ~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g---~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 136 VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIG---LGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCC---cCCCCcceeeeecCCHHHHhhee
Confidence 5699999999999999999999994211 223 33343100 000 001112335789999996
Q ss_pred h-eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q psy18185 94 I-IRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG 132 (190)
Q Consensus 94 ~-i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a 132 (190)
+ +.+..++.++-.++|...+....-.-+++.++++.+.|
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 4 68999999988888876542211112456777777773
No 216
>PHA02244 ATPase-like protein
Probab=96.78 E-value=0.022 Score=50.74 Aligned_cols=72 Identities=25% Similarity=0.276 Sum_probs=50.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCC-CCCCCCCChhHhhhhhhee
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDD-IISPHGIPLDLLDRLLIIR 96 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~-~~~~~~l~~~l~SR~~~i~ 96 (190)
.++++|||++.+.++.+..|+.+++... ...+|+++|.. ..|+.+ +.....+++++++|+..+.
T Consensus 181 GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~---~~G~~~~y~G~k~L~~AllDRFv~I~ 257 (383)
T PHA02244 181 GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTL---GKGADHIYVARNKIDGATLDRFAPIE 257 (383)
T ss_pred CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCC---ccCcccccCCCcccCHHHHhhcEEee
Confidence 3799999999999999999999997321 23577777621 001111 1123567899999999999
Q ss_pred ccCCCHHH
Q psy18185 97 TTPYNQKD 104 (190)
Q Consensus 97 ~~~ls~~e 104 (190)
|..+++.|
T Consensus 258 ~dyp~~~E 265 (383)
T PHA02244 258 FDYDEKIE 265 (383)
T ss_pred CCCCcHHH
Confidence 98877433
No 217
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.017 Score=54.13 Aligned_cols=124 Identities=27% Similarity=0.283 Sum_probs=82.0
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhccCC--CE-EEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALESAIA--PI-VIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~~--~~-iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
+.|+||||+|...+ ...|-|+--++.... ++ ++.+||+ |.-+.++|+.-.
T Consensus 243 P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNR-------------pdVlD~ALlRpg 309 (596)
T COG0465 243 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNR-------------PDVLDPALLRPG 309 (596)
T ss_pred CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCC-------------cccchHhhcCCC
Confidence 47999999999954 234455555554331 34 4445542 555666666543
Q ss_pred ---hheeccCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy18185 93 ---LIIRTTPYNQKDMEAIIKLRANTEGHV--LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 93 ---~~i~~~~ls~~ei~~iL~~~~~~~~~~--i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~ 167 (190)
..+.++.++-..-++||+-++++-.+. ++-.. |++.+..-.--...|++-.|+.+|-+.++..||..++.++
T Consensus 310 RFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~---iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea 386 (596)
T COG0465 310 RFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK---IARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEA 386 (596)
T ss_pred CcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH---HhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHH
Confidence 567888888899999999777654332 33332 6666422233456778877887887888889999999888
Q ss_pred HH
Q psy18185 168 ST 169 (190)
Q Consensus 168 ~~ 169 (190)
..
T Consensus 387 ~d 388 (596)
T COG0465 387 ID 388 (596)
T ss_pred HH
Confidence 74
No 218
>KOG0731|consensus
Probab=96.65 E-value=0.038 Score=53.19 Aligned_cols=127 Identities=24% Similarity=0.243 Sum_probs=89.3
Q ss_pred CCeEEEEecCCCCCH------------HHHHHHHHHhhccC-----C-CEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 29 VPGVLFIDEVHMLDL------------ETFTYLHRALESAI-----A-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~------------~~~~~L~~~~E~~~-----~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.+-|+||||+|.... +.-+.|+.++=+-. . ++++.+|| .|..+.++++.
T Consensus 403 aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn-------------r~d~ld~allr 469 (774)
T KOG0731|consen 403 APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN-------------RPDILDPALLR 469 (774)
T ss_pred CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC-------------CccccCHHhcC
Confidence 367999999998843 34455555553211 2 44555554 26778888887
Q ss_pred hh---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 91 RL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 91 R~---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
.. ..+.+..++...-.+|++.++.+-....++.-+..|+.++ .| .--...|++..++..|-+++...|+..++..
T Consensus 470 pGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t-~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~ 548 (774)
T KOG0731|consen 470 PGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLT-PGFSGADLANLCNEAALLAARKGLREIGTKDLEY 548 (774)
T ss_pred CCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcC-CCCcHHHHHhhhhHHHHHHHHhccCccchhhHHH
Confidence 65 5789999999999999999987766544454455577774 33 3345667888888888888888999888888
Q ss_pred HHH
Q psy18185 167 VST 169 (190)
Q Consensus 167 ~~~ 169 (190)
++.
T Consensus 549 a~~ 551 (774)
T KOG0731|consen 549 AIE 551 (774)
T ss_pred HHH
Confidence 775
No 219
>KOG0726|consensus
Probab=96.65 E-value=0.0054 Score=53.21 Aligned_cols=123 Identities=21% Similarity=0.261 Sum_probs=77.1
Q ss_pred CCeEEEEecCCCCCH-----------HHHHHHHHHhhccC------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 29 VPGVLFIDEVHMLDL-----------ETFTYLHRALESAI------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~~------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
.+.|+||||||.+.. +.|..++.++..-. .+.+|+|||+ ...+.|++...
T Consensus 278 apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr-------------ie~LDPaLiRP 344 (440)
T KOG0726|consen 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR-------------IETLDPALIRP 344 (440)
T ss_pred CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccc-------------ccccCHhhcCC
Confidence 468999999999942 66777666665321 2689999985 34566666555
Q ss_pred h---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHh---cCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 92 L---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEI---GTRSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 92 ~---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~---a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
. ..|.|+.+++.--+.|...+... +.+.+++ ++.+... -|..|+. | ++..|..+|.++.+-.+|.++.
T Consensus 345 GrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIk-A--ictEaGllAlRerRm~vt~~DF 419 (440)
T KOG0726|consen 345 GRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIK-A--ICTEAGLLALRERRMKVTMEDF 419 (440)
T ss_pred CccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHH-H--HHHHHhHHHHHHHHhhccHHHH
Confidence 4 46888888887777666655433 2333322 2222221 1334553 3 4667777787777778998887
Q ss_pred HHHHH
Q psy18185 165 LEVST 169 (190)
Q Consensus 165 ~~~~~ 169 (190)
+.+.+
T Consensus 420 ~ka~e 424 (440)
T KOG0726|consen 420 KKAKE 424 (440)
T ss_pred HHHHH
Confidence 77664
No 220
>PF13173 AAA_14: AAA domain
Probab=96.55 E-value=0.003 Score=47.16 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
...++||||+|++. +.+..+..+.+..+...+++++. ............+..|+..+++.|++-.|.
T Consensus 61 ~~~~i~iDEiq~~~-~~~~~lk~l~d~~~~~~ii~tgS---------~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP-DWEDALKFLVDNGPNIKIILTGS---------SSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhc-cHHHHHHHHHHhccCceEEEEcc---------chHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 34799999999995 67788888888764455777663 111111223456888899999999998774
No 221
>KOG0733|consensus
Probab=96.51 E-value=0.033 Score=52.49 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=62.0
Q ss_pred CCeEEEEecCCCCCH-----------HHHHHHHHHhhcc-------CCCEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 29 VPGVLFIDEVHMLDL-----------ETFTYLHRALESA-------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~-------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.+-|+||||+|.+++ ....-|+..|++. .++++|.|||+ |..+.|+||.
T Consensus 282 aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR-------------PDslDpaLRR 348 (802)
T KOG0733|consen 282 APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR-------------PDSLDPALRR 348 (802)
T ss_pred CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC-------------CcccCHHHhc
Confidence 368999999999975 2334566666542 12466777763 7889999987
Q ss_pred hh---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 91 RL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 91 R~---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
-. ..|.+.-+++.+-.+||+..|++..+.-+= -...||+.
T Consensus 349 aGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~-d~~qlA~l 391 (802)
T KOG0733|consen 349 AGRFDREICLGVPSETAREEILRIICRGLRLSGDF-DFKQLAKL 391 (802)
T ss_pred cccccceeeecCCchHHHHHHHHHHHhhCCCCCCc-CHHHHHhc
Confidence 64 578999999999999999999765433211 23455665
No 222
>KOG0652|consensus
Probab=96.46 E-value=0.033 Score=47.79 Aligned_cols=123 Identities=21% Similarity=0.245 Sum_probs=78.2
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhc--cCC----CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALES--AIA----PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~--~~~----~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
+.|+||||+|.+. .+.|...+.++.. +.+ +.+|.+||+ ..-+.|+++.-.
T Consensus 265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR-------------vDiLDPALlRSG 331 (424)
T KOG0652|consen 265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR-------------VDILDPALLRSG 331 (424)
T ss_pred CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccc-------------ccccCHHHhhcc
Confidence 6899999999983 3677777776653 111 568888874 223556654433
Q ss_pred ---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhc--CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 93 ---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIG--TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 93 ---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a--~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
..|+|+-++++.-..|++.++.+.++ ++++ .+.+++-+ .+|---.| .+-.|.-.|.+.+...|+-++..+
T Consensus 332 RLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTddFNGAQcKA--VcVEAGMiALRr~atev~heDfme 407 (424)
T KOG0652|consen 332 RLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTDDFNGAQCKA--VCVEAGMIALRRGATEVTHEDFME 407 (424)
T ss_pred cccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhcccccCchhhee--eehhhhHHHHhcccccccHHHHHH
Confidence 57999999999999999998877654 3433 33444331 12321222 233455566677888888777665
Q ss_pred HHH
Q psy18185 167 VST 169 (190)
Q Consensus 167 ~~~ 169 (190)
.+.
T Consensus 408 gI~ 410 (424)
T KOG0652|consen 408 GIL 410 (424)
T ss_pred HHH
Confidence 543
No 223
>KOG0740|consensus
Probab=96.35 E-value=0.027 Score=50.91 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=62.3
Q ss_pred CCeEEEEecCCCCCH-----------H-HHHHHHHHhhccC----CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 29 VPGVLFIDEVHMLDL-----------E-TFTYLHRALESAI----APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~-~~~~L~~~~E~~~----~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
.+.|+||||+|.+-. . -..+|+...--.. .+.+|.||| .|+.+...++.|+
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN-------------~P~e~Dea~~Rrf 311 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN-------------RPWELDEAARRRF 311 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC-------------CchHHHHHHHHHh
Confidence 479999999999821 1 2223332222111 145666665 3888988888898
Q ss_pred h-heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q psy18185 93 L-IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG 132 (190)
Q Consensus 93 ~-~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a 132 (190)
+ ++.+++++.+.-..++.....+.+..+.+..+..|++..
T Consensus 312 ~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~T 352 (428)
T KOG0740|consen 312 VKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVT 352 (428)
T ss_pred hceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6 446777888877888887777666678888899999984
No 224
>KOG0482|consensus
Probab=96.28 E-value=0.047 Score=50.55 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=95.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCC--------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh---
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIA--------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--- 93 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~--------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--- 93 (190)
||-+|||.|.|+..--.++..+||...- +.++.|+|-..-+-+-.-.+-.--.+|++|+||+-
T Consensus 441 GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~ 520 (721)
T KOG0482|consen 441 GICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLW 520 (721)
T ss_pred ceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhh
Confidence 7889999999999889999999996532 12444554221000000000001245789999951
Q ss_pred ----------------------------heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-------c------
Q psy18185 94 ----------------------------IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI-------G------ 132 (190)
Q Consensus 94 ----------------------------~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~-------a------ 132 (190)
...|.|++.+-++..|. .|+..+-.++++..++|... +
T Consensus 521 Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~ 599 (721)
T KOG0482|consen 521 LIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDF 599 (721)
T ss_pred hhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCC
Confidence 24566788887777776 35555667899988888765 1
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 133 TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 133 ~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
.--++|..+.+|.....+|+.+=...+..++|.+++.+.
T Consensus 600 t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 600 TYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 124789999999988888887767789999999998653
No 225
>KOG0478|consensus
Probab=96.16 E-value=0.13 Score=48.95 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=46.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC--------------CEEEEEecCCcccc----cCCCCCCCCCCCChhHhhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA--------------PIVIFATNRGRCLV----RGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--------------~~iIlatn~~~~~~----~~t~~~~~~~~l~~~l~SR 91 (190)
.||=+|||+|.|+....+.|+.+||...- +-++.++|-+.-+- .-++| -.+||+|+||
T Consensus 527 ~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eN----I~LpptLLSR 602 (804)
T KOG0478|consen 527 NGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIEN----INLPPTLLSR 602 (804)
T ss_pred CceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhc----cCCChhhhhh
Confidence 37889999999999999999999996442 34666776432111 11222 2468999999
Q ss_pred hhh--eeccCCCHH
Q psy18185 92 LLI--IRTTPYNQK 103 (190)
Q Consensus 92 ~~~--i~~~~ls~~ 103 (190)
+-. +-|.+.++.
T Consensus 603 FDLIylllD~~DE~ 616 (804)
T KOG0478|consen 603 FDLIFLLLDKPDER 616 (804)
T ss_pred hcEEEEEecCcchh
Confidence 832 245555543
No 226
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.07 E-value=0.0072 Score=45.31 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES 55 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~ 55 (190)
..+++|||+|..+.+.+..|+.++|+
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHHHSS
T ss_pred eeEEEECCcccCCHHHHHHHHHHHhh
Confidence 36999999999999999999999985
No 227
>KOG0745|consensus
Probab=96.06 E-value=0.049 Score=49.54 Aligned_cols=70 Identities=13% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCCChhHhhhhh-heeccCCCHHHHHHHHHHHHH-----------hc--CCCCCHHHHHHHHHhcC--CCCHHHHHHHHH
Q psy18185 82 HGIPLDLLDRLL-IIRTTPYNQKDMEAIIKLRAN-----------TE--GHVLDDEALVTLSEIGT--RSTLRYVVQLLT 145 (190)
Q Consensus 82 ~~l~~~l~SR~~-~i~~~~ls~~ei~~iL~~~~~-----------~~--~~~i~~e~l~~i~~~a~--~gdlR~ai~lL~ 145 (190)
+++.|+|.-|+. ++.|.+++++++.++|..=-. .. .+.++++|++.|++.|- +-++|-.-.+|+
T Consensus 423 fGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE 502 (564)
T KOG0745|consen 423 FGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILE 502 (564)
T ss_pred hcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 445678888885 568999999999999864321 12 34689999999999962 234555555666
Q ss_pred HHHHHh
Q psy18185 146 PAALTA 151 (190)
Q Consensus 146 ~~~~~a 151 (190)
.+..-+
T Consensus 503 ~~Llea 508 (564)
T KOG0745|consen 503 SLLLEA 508 (564)
T ss_pred HHHhhh
Confidence 665443
No 228
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.01 E-value=0.088 Score=47.03 Aligned_cols=116 Identities=21% Similarity=0.248 Sum_probs=77.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hhe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i 95 (190)
.|-+++|||..|++..|..|++++.++.= +.+|.+|..-... .......-.++--|. +.+
T Consensus 294 gGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~------lv~~g~fReDLfyRLNVLtl 367 (511)
T COG3283 294 GGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVE------LVQKGKFREDLFYRLNVLTL 367 (511)
T ss_pred CCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHH------HHhcCchHHHHHHHhheeee
Confidence 37999999999999999999999987641 2455555311000 000111223555554 345
Q ss_pred eccCCCHH--HH----HHHHHHHHHhcCC---CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy18185 96 RTTPYNQK--DM----EAIIKLRANTEGH---VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 96 ~~~~ls~~--ei----~~iL~~~~~~~~~---~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a 151 (190)
.++|+-+- ++ +-.+.+.+.+.|+ .++++.+.++.++.+.|++|+.-|.+.+|....
T Consensus 368 ~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 368 NLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred cCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 56666542 22 2345556666544 688999999999999999999999999987544
No 229
>KOG0738|consensus
Probab=96.01 E-value=0.055 Score=48.57 Aligned_cols=89 Identities=27% Similarity=0.312 Sum_probs=54.0
Q ss_pred CCeEEEEecCCCCCH------------HHHHHHHHHhhcc------CCCEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 29 VPGVLFIDEVHMLDL------------ETFTYLHRALESA------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~------------~~~~~L~~~~E~~------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.+.+|||||||.|.. ..-+.|+-.++.- ...++|+|+ | | -|+.|..+||.
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA---------T-N--~PWdiDEAlrR 371 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA---------T-N--FPWDIDEALRR 371 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEec---------c-C--CCcchHHHHHH
Confidence 468999999999942 3445555555421 225788877 5 3 38999999999
Q ss_pred hhh-heeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHh
Q psy18185 91 RLL-IIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEI 131 (190)
Q Consensus 91 R~~-~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~ 131 (190)
|+. .|.++-++.+.-...|+.-. .++..+++ -++.|++.
T Consensus 372 RlEKRIyIPLP~~~~R~~Li~~~l--~~~~~~~~~~~~~lae~ 412 (491)
T KOG0738|consen 372 RLEKRIYIPLPDAEARSALIKILL--RSVELDDPVNLEDLAER 412 (491)
T ss_pred HHhhheeeeCCCHHHHHHHHHHhh--ccccCCCCccHHHHHHH
Confidence 995 45555555555555554332 23333332 24455555
No 230
>KOG0742|consensus
Probab=95.93 E-value=0.033 Score=50.42 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=59.1
Q ss_pred HHHHHHcCccccCCeEEEEecCCCC---------CHHHHHH----HHHHhhccCCCEEEEEecCCcccccCCCCCCCCCC
Q psy18185 17 VNKYIDQGIAELVPGVLFIDEVHML---------DLETFTY----LHRALESAIAPIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 17 v~~~~~~~~~~~~~~Il~IDEi~~L---------~~~~~~~----L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+..|...++. .-+|||||+|.+ +.+.-++ |.++-+.+....++++|| .|..
T Consensus 434 lFDWakkS~r---GLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN-------------rpgd 497 (630)
T KOG0742|consen 434 LFDWAKKSRR---GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN-------------RPGD 497 (630)
T ss_pred HHHHHhhccc---ceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC-------------Cccc
Confidence 3445554443 248889999976 3333333 334445554578889997 3888
Q ss_pred CChhHhhhh-hheeccCCCHHHHHHHHHHHHHh
Q psy18185 84 IPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT 115 (190)
Q Consensus 84 l~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~ 115 (190)
+..++-+|. .+++|+-+..+|-..+|....++
T Consensus 498 lDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 498 LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred hhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 999999998 78899999999999999887654
No 231
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.87 E-value=0.11 Score=50.18 Aligned_cols=100 Identities=15% Similarity=0.215 Sum_probs=66.7
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheecc----CCCHH
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTT----PYNQK 103 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~----~ls~~ 103 (190)
+-+|+|||+|.++.. ....|..+++..+. .++|+++. +. +|..+ ..++-+-...++. ++|.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR--------~~---~~~~~-~~l~~~~~~~~l~~~~l~f~~~ 189 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR--------NL---PPLGI-ANLRVRDQLLEIGSQQLAFDHQ 189 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC--------CC---CCCch-HhHHhcCcceecCHHhCCCCHH
Confidence 468899999999744 45577777776444 67777774 21 23211 2344333344444 99999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 146 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~ 146 (190)
|....+..+ .|..++++.+..|.+. ++|.+ .+++++-.
T Consensus 190 e~~~ll~~~---~~~~~~~~~~~~l~~~-t~Gwp-~~l~l~~~ 227 (903)
T PRK04841 190 EAQQFFDQR---LSSPIEAAESSRLCDD-VEGWA-TALQLIAL 227 (903)
T ss_pred HHHHHHHhc---cCCCCCHHHHHHHHHH-hCChH-HHHHHHHH
Confidence 999988654 4667899999999999 46654 56665543
No 232
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.043 Score=48.17 Aligned_cols=128 Identities=16% Similarity=0.335 Sum_probs=79.6
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCH--------------HHHHHHHHHhhccCC----------C
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL--------------ETFTYLHRALESAIA----------P 59 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~~----------~ 59 (190)
|=-+++.+-+.+.++.+ +..-..-.+||++|||+|.+++ ..|.+|++++|..-. |
T Consensus 138 YVGEDVENillkLlqaa-dydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP 216 (408)
T COG1219 138 YVGEDVENILLKLLQAA-DYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHP 216 (408)
T ss_pred ccchhHHHHHHHHHHHc-ccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCC
Confidence 45567776666776654 2222112469999999999943 689999999994211 2
Q ss_pred ----------EEEEEecCCcc--------cc---------cCC---------------C-CCCCCCCCChhHhhhhhhe-
Q psy18185 60 ----------IVIFATNRGRC--------LV---------RGT---------------D-DIISPHGIPLDLLDRLLII- 95 (190)
Q Consensus 60 ----------~iIlatn~~~~--------~~---------~~t---------------~-~~~~~~~l~~~l~SR~~~i- 95 (190)
.+++++-..|. ++ +.. + +..-.+++.|+|..|..++
T Consensus 217 ~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia 296 (408)
T COG1219 217 QQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIA 296 (408)
T ss_pred ccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceee
Confidence 13332211111 00 000 0 0011345568899998655
Q ss_pred eccCCCHHHHHHHHHHHH-----------HhcC--CCCCHHHHHHHHHhc
Q psy18185 96 RTTPYNQKDMEAIIKLRA-----------NTEG--HVLDDEALVTLSEIG 132 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~-----------~~~~--~~i~~e~l~~i~~~a 132 (190)
.+.+++.+++.+||..=- +.+| ++++++|+..|++.|
T Consensus 297 ~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 297 TLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred ehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHH
Confidence 799999999999986421 1234 468899999999985
No 233
>KOG0735|consensus
Probab=95.73 E-value=0.31 Score=46.99 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCccccCCeEEEEecCCCCCH--------------HHHHHHHHHhhccCC----CEEEEEecCCcccc
Q psy18185 11 KEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL--------------ETFTYLHRALESAIA----PIVIFATNRGRCLV 72 (190)
Q Consensus 11 ~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~~----~~iIlatn~~~~~~ 72 (190)
+.|.+.++.|..+. ....+.|+++|++|.|.. -...+|+.++-.... ..+|.+.+
T Consensus 477 e~iQk~l~~vfse~-~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~q------ 549 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEA-LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQ------ 549 (952)
T ss_pred HHHHHHHHHHHHHH-HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEech------
Confidence 34555555554432 223467999999999932 122334444433222 23444442
Q ss_pred cCCCCCCCCCCCChhHhhhh---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q psy18185 73 RGTDDIISPHGIPLDLLDRL---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAA 148 (190)
Q Consensus 73 ~~t~~~~~~~~l~~~l~SR~---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~ 148 (190)
+...++|.+-|.- .++.++++...+-..||...+.+....+..+-++.++..+ +| +++....+.++|-
T Consensus 550 -------e~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~T-EGy~~~DL~ifVeRai 621 (952)
T KOG0735|consen 550 -------ELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKT-EGYLATDLVIFVERAI 621 (952)
T ss_pred -------hhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhc-CCccchhHHHHHHHHH
Confidence 2455666666653 3578999999999999999998876666777788898885 55 7777777778877
Q ss_pred HHhh--h--cCCCcccHHHHHHHHHhccCh
Q psy18185 149 LTAK--T--NGRTAISKQDILEVSTLFLDA 174 (190)
Q Consensus 149 ~~a~--~--~g~~~It~~~V~~~~~~f~~~ 174 (190)
..|. + .+.+.+|-++..+++.-|.-.
T Consensus 622 ~~a~leris~~~klltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 622 HEAFLERISNGPKLLTKELFEKSLKDFVPL 651 (952)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHhcChH
Confidence 6555 2 344478888888888666543
No 234
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.59 E-value=0.066 Score=55.97 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=65.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhccCC-------------CEEEEEecCCcccccCCCCCCCCCCC------ChhHhhhh
Q psy18185 32 VLFIDEVHMLDLETFTYLHRALESAIA-------------PIVIFATNRGRCLVRGTDDIISPHGI------PLDLLDRL 92 (190)
Q Consensus 32 Il~IDEi~~L~~~~~~~L~~~~E~~~~-------------~~iIlatn~~~~~~~~t~~~~~~~~l------~~~l~SR~ 92 (190)
-+++||......+...+|+|++++... |.|.+.+ |.| ||... ..+||.|+
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFA---------TQN--ppg~YgGRK~LSrAFRNRF 1026 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFA---------TQN--PPGGYGGRKGLSRAFRNRF 1026 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEe---------ecC--CCccccchHHHHHHHHhhh
Confidence 577999999999999999999986542 3444444 334 35433 57899999
Q ss_pred hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
..+.|..+.++|+..||..+| +|.+.-+..|.+.
T Consensus 1027 lE~hFddipedEle~ILh~rc-----~iapSyakKiVeV 1060 (4600)
T COG5271 1027 LEMHFDDIPEDELEEILHGRC-----EIAPSYAKKIVEV 1060 (4600)
T ss_pred HhhhcccCcHHHHHHHHhccC-----ccCHHHHHHHHHH
Confidence 999999999999999998655 7778877777776
No 235
>KOG0732|consensus
Probab=95.43 E-value=0.13 Score=51.18 Aligned_cols=91 Identities=22% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCeEEEEecCCCCCH-----------HHHHHHHHHhhccCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--
Q psy18185 29 VPGVLFIDEVHMLDL-----------ETFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-- 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-- 92 (190)
.+-|+|.||||-|.+ .....|+-+|..-+. +++|.|||+ |..+.|++|.+.
T Consensus 363 qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR-------------pda~dpaLRRPgrf 429 (1080)
T KOG0732|consen 363 QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR-------------PDAIDPALRRPGRF 429 (1080)
T ss_pred CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC-------------ccccchhhcCCccc
Confidence 468999999998843 456677777775332 567778863 678889998876
Q ss_pred -hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q psy18185 93 -LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG 132 (190)
Q Consensus 93 -~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a 132 (190)
..+.|+-.+.+.-..||..+-.+..-.+....+..+++.+
T Consensus 430 dref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t 470 (1080)
T KOG0732|consen 430 DREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEET 470 (1080)
T ss_pred ceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhc
Confidence 4678888888888899988877777789999999999995
No 236
>KOG0481|consensus
Probab=95.43 E-value=0.18 Score=46.87 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA 56 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~ 56 (190)
.||+||||.|.|..+---++..+||..
T Consensus 429 gGVvCIDEFDKMre~DRVAIHEAMEQQ 455 (729)
T KOG0481|consen 429 GGVVCIDEFDKMREDDRVAIHEAMEQQ 455 (729)
T ss_pred CCEEEeehhhccCchhhhHHHHHHHhh
Confidence 489999999999998888999999964
No 237
>KOG0739|consensus
Probab=95.40 E-value=0.058 Score=47.12 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=51.5
Q ss_pred CeEEEEecCCCCCH-------H----HHHHHHHHhhc----cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-
Q psy18185 30 PGVLFIDEVHMLDL-------E----TFTYLHRALES----AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL- 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-------~----~~~~L~~~~E~----~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~- 93 (190)
+.||||||||.|+. + .-..|+--|.. ..++.++.||| . |+.+..++|.|+.
T Consensus 226 PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN--------i-----Pw~LDsAIRRRFek 292 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN--------I-----PWVLDSAIRRRFEK 292 (439)
T ss_pred CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC--------C-----chhHHHHHHHHhhc
Confidence 58999999999943 1 11222222321 11245555664 2 8889999999984
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG 132 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a 132 (190)
.|.++-+....-....+...-.-...+++.-...+++.+
T Consensus 293 RIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kT 331 (439)
T KOG0739|consen 293 RIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKT 331 (439)
T ss_pred ceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhc
Confidence 344433333322222322222233467788888888884
No 238
>KOG2170|consensus
Probab=95.39 E-value=0.21 Score=43.47 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=67.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC--------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA--------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls 101 (190)
+.++|.||+|.|.++....|-..++.++. .+||+.+|.+..-+ ..+-.+..++ -....++.
T Consensus 179 rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI---------~~~aL~~~~~--g~~re~~~ 247 (344)
T KOG2170|consen 179 RSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEI---------ARIALENARN--GKPREQLR 247 (344)
T ss_pred CceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHH---------HHHHHHHHHc--CCCcccch
Confidence 47999999999999999999999995443 47899887432100 0001112221 22344555
Q ss_pred HHHHHHHHHHHHHhc---CCC----CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTE---GHV----LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~---~~~----i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
-+.++..|...+.++ |+. ++...+++.+-. --.+-|+...=++... .. +| -..+.+.+..+++
T Consensus 248 l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPF-LPLek~hV~~C~r~el-~~--rg-~~~d~~~~erva~ 317 (344)
T KOG2170|consen 248 LKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPF-LPLEKRHVRSCIRAEL-RK--RG-LAPDQDFVERVAN 317 (344)
T ss_pred hhhhhHHHHHhhhccccccccccccchhhHHhhccCc-CcccHHHHHHHHHHHH-Hh--cc-cccchHHHHHHHH
Confidence 556666666555432 232 444444444444 3455565444333222 11 12 2455555555553
No 239
>KOG0480|consensus
Probab=95.26 E-value=0.27 Score=46.62 Aligned_cols=142 Identities=21% Similarity=0.260 Sum_probs=86.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC--------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA--------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-- 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-- 93 (190)
.||=+|||.|.|+...|.+|..+||...- ..++.|+|-..-.-+..-....--.+.+++.||+=
T Consensus 443 nGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~ 522 (764)
T KOG0480|consen 443 NGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLF 522 (764)
T ss_pred CceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEE
Confidence 38999999999999889999999997542 13566665321000000000001124578889851
Q ss_pred -----------------------------heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh--------c---C
Q psy18185 94 -----------------------------IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI--------G---T 133 (190)
Q Consensus 94 -----------------------------~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~--------a---~ 133 (190)
...-.+++-+++...|.+.. .-.-.++.++.++|.+. + .
T Consensus 523 FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~ 601 (764)
T KOG0480|consen 523 FILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNN 601 (764)
T ss_pred EEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccC
Confidence 11223788888888887665 33336888888888776 1 1
Q ss_pred CCCHHHHHHHHHHHHH----HhhhcCCCcccHHHHHHHHHhcc
Q psy18185 134 RSTLRYVVQLLTPAAL----TAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 134 ~gdlR~ai~lL~~~~~----~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
..+.|....-|+.... .|+.+-+..+|.++|.++..+..
T Consensus 602 ~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk 644 (764)
T KOG0480|consen 602 RSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLK 644 (764)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHH
Confidence 1133444444544443 34445556899999999987643
No 240
>KOG0479|consensus
Probab=95.21 E-value=0.23 Score=46.88 Aligned_cols=64 Identities=23% Similarity=0.152 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh--ccChHHHHH
Q psy18185 117 GHVLDDEALVTLSEIG---------------TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL--FLDAKSSAR 179 (190)
Q Consensus 117 ~~~i~~e~l~~i~~~a---------------~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~--f~~~~~~~~ 179 (190)
.-.++++++++|++.= +.=.+|..-.++..+..+|+-.=++.++.++.+.+.++ |.-+...|+
T Consensus 573 ~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA~f~e~v~ 652 (818)
T KOG0479|consen 573 KPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFALFKEKVK 652 (818)
T ss_pred CccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHHHHhhhcc
Confidence 3468899999999871 01134655556666667777666778999999988866 444444444
Q ss_pred H
Q psy18185 180 I 180 (190)
Q Consensus 180 ~ 180 (190)
.
T Consensus 653 ~ 653 (818)
T KOG0479|consen 653 P 653 (818)
T ss_pred c
Confidence 3
No 241
>KOG0733|consensus
Probab=95.19 E-value=0.061 Score=50.78 Aligned_cols=90 Identities=26% Similarity=0.272 Sum_probs=61.3
Q ss_pred CCeEEEEecCCCCCH-----------HHHHHHHHHhhc---cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--
Q psy18185 29 VPGVLFIDEVHMLDL-----------ETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-- 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~~~~~L~~~~E~---~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-- 92 (190)
.+-|||.||+|.|.+ ...|-|+.-++. ..++.+|.|||+ |.-+.|+++.-.
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNR-------------PDiIDpAiLRPGRl 670 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNR-------------PDIIDPAILRPGRL 670 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCC-------------CcccchhhcCCCcc
Confidence 468999999999943 355555555542 223677778873 677888887765
Q ss_pred -hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHh
Q psy18185 93 -LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEI 131 (190)
Q Consensus 93 -~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~ 131 (190)
....+..++.+|-.+||+-..++.+..+++++ ++.|+..
T Consensus 671 Dk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 671 DKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred CceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 35667778888999999988875444455543 4555555
No 242
>KOG0729|consensus
Probab=95.09 E-value=0.21 Score=43.14 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=70.0
Q ss_pred eEEEEecCCCCC-----------HHHHHHHHHHhhc-----cCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-
Q psy18185 31 GVLFIDEVHMLD-----------LETFTYLHRALES-----AIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL- 92 (190)
Q Consensus 31 ~Il~IDEi~~L~-----------~~~~~~L~~~~E~-----~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~- 92 (190)
-|+|.||+|.+. .+.|...+.++.. +.+ ..++++||+ |..+.|++....
T Consensus 272 ciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnr-------------pdtldpallrpgr 338 (435)
T KOG0729|consen 272 CIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR-------------PDTLDPALLRPGR 338 (435)
T ss_pred EEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCC-------------CCCcCHhhcCCcc
Confidence 599999999983 3677777777763 212 468889973 667777776654
Q ss_pred --hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhc--CCC-CHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 93 --LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIG--TRS-TLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 93 --~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a--~~g-dlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
..++|.-++-+--..|++.+++...+ +.+. .++|+..| +.| ++|.. ...|.-+|.+.-++..|..+.
T Consensus 339 ldrkvef~lpdlegrt~i~kihaksmsv--erdir~ellarlcpnstgaeirsv---cteagmfairarrk~atekdf 411 (435)
T KOG0729|consen 339 LDRKVEFGLPDLEGRTHIFKIHAKSMSV--ERDIRFELLARLCPNSTGAEIRSV---CTEAGMFAIRARRKVATEKDF 411 (435)
T ss_pred cccceeccCCcccccceeEEEecccccc--ccchhHHHHHhhCCCCcchHHHHH---HHHhhHHHHHHHhhhhhHHHH
Confidence 35677667767667777777655433 3332 44556664 223 56654 444544555433444554433
No 243
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.89 E-value=0.065 Score=40.37 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=30.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.+.|+|+|+|.|+.+.|..|...++.. ..+.+|+++.
T Consensus 70 ~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~ 108 (138)
T PF14532_consen 70 GGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSS 108 (138)
T ss_dssp TSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEEC
T ss_pred CCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 489999999999999999999999865 2378888884
No 244
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.87 E-value=0.05 Score=41.55 Aligned_cols=54 Identities=26% Similarity=0.413 Sum_probs=35.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-----------CEEEEEecCCcccccCCCCCC---CCCCCChhHhhhhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-----------PIVIFATNRGRCLVRGTDDII---SPHGIPLDLLDRLL 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-----------~~iIlatn~~~~~~~~t~~~~---~~~~l~~~l~SR~~ 93 (190)
..|+++||+++..+..|++|+.++++... |-+|+||- |+. .-+.+|.++++|+.
T Consensus 63 ~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATq----------Np~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 TNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQ----------NPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-----------TT--S------HHHHTTSS
T ss_pred hceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEec----------CccccCceecCCHHHhcccc
Confidence 36999999999999999999999997431 35666662 211 12356788888864
No 245
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=94.71 E-value=0.24 Score=36.96 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=51.8
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccC
Q psy18185 108 IIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLD 173 (190)
Q Consensus 108 iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~ 173 (190)
++.++.+..|+ .+++++...+.+.+ .|++..++..|..+|+..|++.|+.+||+-++....+
T Consensus 6 ~v~~iLk~~Gv~~~~~~v~~~Lle~~----~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 6 VIAAILKSMGITEYEPRVINQLLEFA----YRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 45555556676 69999999999994 5899999999999999999999999999998865544
No 246
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.71 E-value=0.071 Score=39.00 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=28.6
Q ss_pred eEEEEecCCCC-CHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 31 GVLFIDEVHML-DLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L-~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
.+|+|||+|+| +.+.++.|..+.+. ....+|+++
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~~-~~~~vvl~G 123 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLNE-SNIKVVLVG 123 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTCS-CBEEEEEEE
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHhC-CCCeEEEEE
Confidence 59999999999 99999999888884 346677777
No 247
>PF14516 AAA_35: AAA-like domain
Probab=94.70 E-value=0.27 Score=42.85 Aligned_cols=99 Identities=26% Similarity=0.291 Sum_probs=62.1
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCC------CEEEEEecCCcccccCCCCCCCCCCC-ChhHhhhhhhee
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIA------PIVIFATNRGRCLVRGTDDIISPHGI-PLDLLDRLLIIR 96 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~------~~iIlatn~~~~~~~~t~~~~~~~~l-~~~l~SR~~~i~ 96 (190)
+-||+|||+|.+.. +-+..|+...+.... ..+|++.. |+...+ ... .++| .-+..+.
T Consensus 128 ~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~--------t~~~~~-~~~~~SPF-NIg~~i~ 197 (331)
T PF14516_consen 128 PLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGS--------TEDYII-LDINQSPF-NIGQPIE 197 (331)
T ss_pred CEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecC--------cccccc-cCCCCCCc-cccccee
Confidence 45888999999853 455666666664332 24555553 221111 111 1122 3357889
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy18185 97 TTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLL 144 (190)
Q Consensus 97 ~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL 144 (190)
+++.|.+|+...++. .+...+++.++.|... .+|-+ +.++.+
T Consensus 198 L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~-tgGhP-~Lv~~~ 239 (331)
T PF14516_consen 198 LPDFTPEEVQELAQR----YGLEFSQEQLEQLMDW-TGGHP-YLVQKA 239 (331)
T ss_pred CCCCCHHHHHHHHHh----hhccCCHHHHHHHHHH-HCCCH-HHHHHH
Confidence 999999999887664 3567888999999999 46655 544444
No 248
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.68 E-value=0.045 Score=43.31 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=30.2
Q ss_pred eEEEEecCCCCCH-----------HHHHHHHHHhhccCC------------CEEEEEec
Q psy18185 31 GVLFIDEVHMLDL-----------ETFTYLHRALESAIA------------PIVIFATN 66 (190)
Q Consensus 31 ~Il~IDEi~~L~~-----------~~~~~L~~~~E~~~~------------~~iIlatn 66 (190)
+||++||+|..++ ..|+.|++++|++.- .+||+++|
T Consensus 70 gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn 128 (171)
T PF07724_consen 70 GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSN 128 (171)
T ss_dssp TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEES
T ss_pred hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecc
Confidence 6999999999999 999999999996431 35777775
No 249
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.61 E-value=0.18 Score=42.01 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhh-ccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 13 INKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALE-SAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 13 I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E-~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
..+.+.+++..+ +-++++|+++... .+..+...+- .+.+..+|++|. . . .+.......
T Consensus 90 ~~~~l~~~L~~~-----~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR--------~-----~-~v~~~~~~~ 148 (287)
T PF00931_consen 90 LQDQLRELLKDK-----RCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTR--------D-----R-SVAGSLGGT 148 (287)
T ss_dssp HHHHHHHHHCCT-----SEEEEEEEE-SHH--HH-------HCHHSS-EEEEEES--------C-----G-GGGTTHHSC
T ss_pred ccccchhhhccc-----cceeeeeeecccc--ccccccccccccccccccccccc--------c-----c-ccccccccc
Confidence 344555555443 3689999998764 3333333332 222356777773 1 1 122222222
Q ss_pred hhheeccCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18185 92 LLIIRTTPYNQKDMEAIIKLRANTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPA 147 (190)
Q Consensus 92 ~~~i~~~~ls~~ei~~iL~~~~~~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~ 147 (190)
+..+++++++.++..+.+...+.... ..-.++.+..|++. ++ ++..|+.++-..
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~-c~-glPLal~~~a~~ 205 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEK-CG-GLPLALKLIASY 205 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHH-TT-T-HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cc-cccccccccccc
Confidence 56899999999999999998875432 11224567788888 45 577888877544
No 250
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.40 E-value=1.3 Score=37.63 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=50.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHH----hhccCCCEEEEEecCCcc--cccCCCCCCCCCCCChhHhhhh--hheeccCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRA----LESAIAPIVIFATNRGRC--LVRGTDDIISPHGIPLDLLDRL--LIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~----~E~~~~~~iIlatn~~~~--~~~~t~~~~~~~~l~~~l~SR~--~~i~~~~ls 101 (190)
+-|+||||.|+++++....+++. ++. +..++|++.+.... -+...-+.........+++.+. ..|.+|+++
T Consensus 173 ~iViiIDdLDR~~~~~i~~~l~~ik~~~~~-~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~ 251 (325)
T PF07693_consen 173 RIVIIIDDLDRCSPEEIVELLEAIKLLLDF-PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPS 251 (325)
T ss_pred eEEEEEcchhcCCcHHHHHHHHHHHHhcCC-CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCC
Confidence 45888999999988644444444 444 34678888853200 0000000000012234677776 358899999
Q ss_pred HHHHHHHHHHHHHh
Q psy18185 102 QKDMEAIIKLRANT 115 (190)
Q Consensus 102 ~~ei~~iL~~~~~~ 115 (190)
..++...+....+.
T Consensus 252 ~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 252 PSDLERYLNELLES 265 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877543
No 251
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.39 E-value=0.057 Score=42.63 Aligned_cols=27 Identities=41% Similarity=0.519 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA 56 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~ 56 (190)
.|.||||||+.|+.+.|..|+++++++
T Consensus 94 ~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~ 120 (168)
T PF00158_consen 94 GGTLFLDEIEDLPPELQAKLLRVLEEG 120 (168)
T ss_dssp TSEEEEETGGGS-HHHHHHHHHHHHHS
T ss_pred ceEEeecchhhhHHHHHHHHHHHHhhc
Confidence 489999999999999999999999964
No 252
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.34 E-value=0.25 Score=45.20 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=50.0
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHhhccC-------------------C----CEEEEEecCCcccccCCCCCCCCCCCC
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRALESAI-------------------A----PIVIFATNRGRCLVRGTDDIISPHGIP 85 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~E~~~-------------------~----~~iIlatn~~~~~~~~t~~~~~~~~l~ 85 (190)
+.++||||+++.+.+ .+..+..++|... . ..||.+.| +.+ .+...+.
T Consensus 273 ~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMN--------t~D-rs~~~lD 343 (459)
T PRK11331 273 KYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMN--------TAD-RSLAVVD 343 (459)
T ss_pred CcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecC--------ccc-cchhhcc
Confidence 469999999999965 5778888887421 1 24555555 211 2334577
Q ss_pred hhHhhhhhheeccC-CCHHHHHHHHHH
Q psy18185 86 LDLLDRLLIIRTTP-YNQKDMEAIIKL 111 (190)
Q Consensus 86 ~~l~SR~~~i~~~~-ls~~ei~~iL~~ 111 (190)
.+++.|+..+++.| ++..++.+.+..
T Consensus 344 ~AlrRRF~fi~i~p~~~~~~~~~~l~~ 370 (459)
T PRK11331 344 YALRRRFSFIDIEPGFDTPQFRNFLLN 370 (459)
T ss_pred HHHHhhhheEEecCCCChHHHHHHHHh
Confidence 89999999999887 666666666543
No 253
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.04 E-value=0.25 Score=43.89 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=60.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRT 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~ 97 (190)
+||+-++|+.....+.++.|+.++++..- .+||.++|...... . .....+.+|++||..+.+
T Consensus 237 rGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~-----~-~~~k~~eaf~dR~~~i~v 310 (361)
T smart00763 237 RGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQR-----F-KSNKKNEALLDRIIKVKV 310 (361)
T ss_pred CceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhh-----h-hccccchhhhhceEEEeC
Confidence 48999999999999999999999996431 12444454210000 0 002446789999998888
Q ss_pred cCCCHHH-HHHHHHHHHHh---cCCCCCHHHHHHHHHh
Q psy18185 98 TPYNQKD-MEAIIKLRANT---EGHVLDDEALVTLSEI 131 (190)
Q Consensus 98 ~~ls~~e-i~~iL~~~~~~---~~~~i~~e~l~~i~~~ 131 (190)
+.+..-. =.+|.++.+.. .+..+.+.+++.++..
T Consensus 311 pY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 311 PYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 7665532 23444444432 2556777777776665
No 254
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=93.64 E-value=0.56 Score=42.42 Aligned_cols=94 Identities=19% Similarity=0.330 Sum_probs=61.1
Q ss_pred EEEEecCCCCCH--------HHHHHHHHHhhccCC-----CEEEEEecCCcccccCCCCCCCCCCC--ChhHhhhh----
Q psy18185 32 VLFIDEVHMLDL--------ETFTYLHRALESAIA-----PIVIFATNRGRCLVRGTDDIISPHGI--PLDLLDRL---- 92 (190)
Q Consensus 32 Il~IDEi~~L~~--------~~~~~L~~~~E~~~~-----~~iIlatn~~~~~~~~t~~~~~~~~l--~~~l~SR~---- 92 (190)
+|+|||+..|-+ ...+.|+.++.+... .-|+++++.. ++. | ++.++ -++|.+|.
T Consensus 242 lI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPe--f~e--D---~rrGv~sY~AL~~RL~~~~ 314 (416)
T PF10923_consen 242 LILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPE--FFE--D---GRRGVYSYEALAQRLAEEF 314 (416)
T ss_pred EEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHH--Hhh--C---ccccccccHHHHHHHhccc
Confidence 666999998821 467788888876322 3455555211 110 0 12333 25777773
Q ss_pred -----------hheeccCCCHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHhc
Q psy18185 93 -----------LIIRTTPYNQKDMEAIIKLRANT------EGHVLDDEALVTLSEIG 132 (190)
Q Consensus 93 -----------~~i~~~~ls~~ei~~iL~~~~~~------~~~~i~~e~l~~i~~~a 132 (190)
.+++++|++.+++..++.+...- ....++++.+..+++.+
T Consensus 315 ~~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 315 FADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred cccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 47899999999999888766431 23478999999988773
No 255
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.34 E-value=4.4 Score=34.24 Aligned_cols=117 Identities=26% Similarity=0.303 Sum_probs=74.3
Q ss_pred CeEEEEecCCCC-CHHHHHHHHHHhhccCC-----CEEEEEecCC---cccccCCC----CCCCCCCCC---hhHhhhh-
Q psy18185 30 PGVLFIDEVHML-DLETFTYLHRALESAIA-----PIVIFATNRG---RCLVRGTD----DIISPHGIP---LDLLDRL- 92 (190)
Q Consensus 30 ~~Il~IDEi~~L-~~~~~~~L~~~~E~~~~-----~~iIlatn~~---~~~~~~t~----~~~~~~~l~---~~l~SR~- 92 (190)
+-|||+||.-.= ....+..|-.++|.+-. +.+..++|+- .....+.. +...+.... .+|-+|+
T Consensus 107 kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG 186 (249)
T PF05673_consen 107 KFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG 186 (249)
T ss_pred CEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCC
Confidence 469999985432 23567777777775332 3344444432 00111110 000111111 2677886
Q ss_pred hheeccCCCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRANTEGHVLD-----DEALVTLSEIGTRSTLRYVVQLLTPA 147 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~~~~~~~i~-----~e~l~~i~~~a~~gdlR~ai~lL~~~ 147 (190)
+.+.|.+++.++--+|++..++..|+.++ .+|+++-..++ ..+-|.|-+..+..
T Consensus 187 L~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg-~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 187 LWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG-GRSGRTARQFIDDL 245 (249)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 78999999999999999999999999998 46677777773 56889888877654
No 256
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=93.33 E-value=0.18 Score=46.08 Aligned_cols=80 Identities=30% Similarity=0.352 Sum_probs=51.1
Q ss_pred HHcCccccCCeEEEEecCCCCCHHHHHHHHHHhh------ccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-h
Q psy18185 21 IDQGIAELVPGVLFIDEVHMLDLETFTYLHRALE------SAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-L 93 (190)
Q Consensus 21 ~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E------~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~ 93 (190)
+.-|...-++-|+|+||+|.|-.++-.+|+.-+| .++++=+.++| . +|..+|.++++.| .
T Consensus 247 PEvGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvT---------Q----~P~DiP~~VL~QLGn 313 (502)
T PF05872_consen 247 PEVGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVT---------Q----NPTDIPDDVLGQLGN 313 (502)
T ss_pred ccCCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEe---------C----CCCCCCHHHHHhhhh
Confidence 4455555556688899999995544444444444 22345577777 3 3889999999987 2
Q ss_pred he--eccCCCHHHHHHHHHHHHH
Q psy18185 94 II--RTTPYNQKDMEAIIKLRAN 114 (190)
Q Consensus 94 ~i--~~~~ls~~ei~~iL~~~~~ 114 (190)
.| .+..+|+.|.+. ++..++
T Consensus 314 rIQHaLRAfTP~DqKa-vk~aa~ 335 (502)
T PF05872_consen 314 RIQHALRAFTPKDQKA-VKAAAE 335 (502)
T ss_pred HHHHHHhcCCHhHHHH-HHHHHH
Confidence 23 677788887664 444444
No 257
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=93.13 E-value=0.54 Score=31.44 Aligned_cols=56 Identities=27% Similarity=0.207 Sum_probs=43.0
Q ss_pred HHHHHHhcCCC-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 109 IKLRANTEGHV-LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 109 L~~~~~~~~~~-i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
+++.++..|+. +++++.+.+++.. +- ++-++++.+..+++..+++.+|.+||..++
T Consensus 8 i~ria~~~Gi~ris~~a~~~l~~~~-e~---rl~~i~~~A~k~~~hakRktlt~~DI~~Al 64 (65)
T smart00803 8 IKDVAESLGIGNLSDEAAKLLAEDV-EY---RIKEIVQEALKFMRHSKRTTLTTSDIDSAL 64 (65)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhCCCeecHHHHHHHh
Confidence 44455566775 9999999998883 42 456677888888888889999999998765
No 258
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=92.88 E-value=0.73 Score=35.07 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=46.6
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccCh
Q psy18185 108 IIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDA 174 (190)
Q Consensus 108 iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~~ 174 (190)
++....+..|+ ++++.++..+.+++ .|+.-.+|+.|..+|...|++.|+.++|+-++....+.
T Consensus 17 ~i~~iL~~~Gv~~yeprVv~qLLEfa----yRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~~~ 80 (129)
T PF02291_consen 17 VIHLILKSMGVTEYEPRVVNQLLEFA----YRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRLDH 80 (129)
T ss_dssp HHHHHHHHTT---B-THHHHHHHHHH----HHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT---
T ss_pred HHHHHHHHcCCcccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHhh
Confidence 34444555677 78999999999995 69999999999999998899999999999998765443
No 259
>PF12846 AAA_10: AAA-like domain
Probab=92.77 E-value=0.27 Score=40.77 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=47.7
Q ss_pred cCCeEEEEecCCCCCHH--HHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCC-----hhHhhhhhheecc
Q psy18185 28 LVPGVLFIDEVHMLDLE--TFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIP-----LDLLDRLLIIRTT 98 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~--~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~-----~~l~SR~~~i~~~ 98 (190)
..+.++++||+|.+... ....+.+++.++.+ ..++++|. .|..++ +.+.+-|...-+-
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ-------------~~~~l~~~~~~~~i~~n~~~~i~~ 285 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQ-------------SPSDLPKSPIEDAILANCNTKIIF 285 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeC-------------CHHHHhccchHHHHHHhCCcEEEe
Confidence 35678999999999653 44455555554333 66888884 256666 7899999888777
Q ss_pred CCCHHHHHH
Q psy18185 99 PYNQKDMEA 107 (190)
Q Consensus 99 ~ls~~ei~~ 107 (190)
++++.+...
T Consensus 286 ~~~~~~~~~ 294 (304)
T PF12846_consen 286 RLEDSDDAE 294 (304)
T ss_pred cCChHHHHH
Confidence 888877776
No 260
>PF05729 NACHT: NACHT domain
Probab=91.63 E-value=1.3 Score=33.19 Aligned_cols=68 Identities=21% Similarity=0.412 Sum_probs=45.0
Q ss_pred eEEEEecCCCCCHHH--------HHHHHHHhhc--cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh---hhheec
Q psy18185 31 GVLFIDEVHMLDLET--------FTYLHRALES--AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR---LLIIRT 97 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~--------~~~L~~~~E~--~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR---~~~i~~ 97 (190)
-+++||-+|.+.... ...|..++.. ++...++++++ |...+ .+..+ ...+.+
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r--------------~~~~~-~~~~~~~~~~~~~l 147 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSR--------------PRAFP-DLRRRLKQAQILEL 147 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEc--------------CChHH-HHHHhcCCCcEEEE
Confidence 578899999997632 2356666666 44466777773 22221 12232 257899
Q ss_pred cCCCHHHHHHHHHHHH
Q psy18185 98 TPYNQKDMEAIIKLRA 113 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~ 113 (190)
++++++++.+.++...
T Consensus 148 ~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 148 EPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999997654
No 261
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=91.58 E-value=1.5 Score=29.43 Aligned_cols=57 Identities=28% Similarity=0.239 Sum_probs=37.8
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 108 IIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 108 iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
.++..|+..|+ .++++++..|+.-. +.-+|. +++.+........+.++|.+||..++
T Consensus 8 svk~iAes~Gi~~l~de~a~~La~dv-eyrlre---iiq~a~kfm~hskR~~Lt~~Di~~AL 65 (66)
T PF02969_consen 8 SVKDIAESLGISNLSDEAAKALAEDV-EYRLRE---IIQEALKFMRHSKRTKLTTDDINSAL 65 (66)
T ss_dssp HHHHHHHHTT---B-HHHHHHHHHHH-HHHHHH---HHHHHHHHHHHTT-SSB-HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHhCCCCCCHHHHHHHh
Confidence 45566777788 89999999999984 544454 45555555555667899999998876
No 262
>PF09077 Phage-MuB_C: Mu B transposition protein, C terminal ; InterPro: IPR009084 Bacteriophage Mu can integrate into the host bacterial genome and replicate via transposition. Mu requires the activity of four proteins for DNA transposition. Two of these proteins are the phage-encoded A and B transposition proteins, while the other two are host-specified accessory factors HU and IHF. These four proteins can form nucleoprotein complexes (transposomes), which enable strand transfer. The stable protein-DNA intermediate is subsequently disassembled prior to DNA replication by host proteins. The Mu B transposition protein is an ATP-dependent, DNA-binding protein required for target capture and immunity, as well as for activating transpososome function []. The C-terminal domain of the B transposition protein is believed to be involved in both DNA-binding and protein-protein contacts with the Mu A transposition protein. The structure of the C-terminal domain consists of four helices in an irregular array [].; GO: 0003677 DNA binding, 0006313 transposition, DNA-mediated; PDB: 1F6V_A.
Probab=91.54 E-value=0.16 Score=35.35 Aligned_cols=70 Identities=29% Similarity=0.317 Sum_probs=48.4
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGT-RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~-~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
...+...+.+|+..+++ ..|+ -+++++.++..++. .|.+|..-..|..|.-.|..+|.. ||.++|+.++.
T Consensus 6 r~~i~k~~~~Di~Ai~~----AWgI-~d~~~~~~l~~I~~k~GaLR~l~ktLrlA~m~A~g~g~~-i~~~~i~~A~~ 76 (78)
T PF09077_consen 6 RVRIKKPKKADIKAIAK----AWGI-TDKEERKLLQSIAEKPGALRQLTKTLRLAAMFAKGEGEA-ITADHIRAAWK 76 (78)
T ss_dssp TT--SS-SGGGTTHHHH----SSSS-SSSHHHHHHHTTSSS-S-HHHHHHHHGGGT-TT-TTS---SSHHHHHHHHT
T ss_pred ccccCCCCHHHHHHHHH----HhCC-CCHHHHHHHHHHcccccHHHHHHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 45667788888887764 4676 47788888888853 389999999999998888766664 99999998864
No 263
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=91.16 E-value=0.59 Score=43.36 Aligned_cols=128 Identities=21% Similarity=0.294 Sum_probs=81.3
Q ss_pred eEEEEecCCCCC-HHHHHHHHHHhhc-------cC-------------C----CEEEEEecCCcccccCCCCCCCCCCC-
Q psy18185 31 GVLFIDEVHMLD-LETFTYLHRALES-------AI-------------A----PIVIFATNRGRCLVRGTDDIISPHGI- 84 (190)
Q Consensus 31 ~Il~IDEi~~L~-~~~~~~L~~~~E~-------~~-------------~----~~iIlatn~~~~~~~~t~~~~~~~~l- 84 (190)
|+|+||=-+.|. +.++..|-+++.. +. + ..+|+++++ + ....+
T Consensus 334 GyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~--------~---~y~~L~ 402 (509)
T PF13654_consen 334 GYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDR--------E---LYYLLY 402 (509)
T ss_dssp SEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-T--------T---HHHHS-
T ss_pred eEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCH--------H---HHHHHH
Confidence 899999888886 5788999888852 10 1 147777742 1 12222
Q ss_pred --ChhHhhhhh-heecc---CCCHHHHH---HHHHHHHHhcCC-CCCHHHHHHHHHhcCC-------CCHHHHHHHHHHH
Q psy18185 85 --PLDLLDRLL-IIRTT---PYNQKDME---AIIKLRANTEGH-VLDDEALVTLSEIGTR-------STLRYVVQLLTPA 147 (190)
Q Consensus 85 --~~~l~SR~~-~i~~~---~ls~~ei~---~iL~~~~~~~~~-~i~~e~l~~i~~~a~~-------gdlR~ai~lL~~~ 147 (190)
.|+|.+-+- ...|. +.|++.+. ..+...|+++++ .++.+|+..|++++++ -.+.....+|..|
T Consensus 403 ~~D~dF~~lFkv~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA 482 (509)
T PF13654_consen 403 EYDPDFYKLFKVKAEFDSEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREA 482 (509)
T ss_dssp HHHHHHHHHHSEEEE--SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHH
T ss_pred HhCHHHHhCCCEEEEccccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHH
Confidence 367777652 22232 34555444 455555667776 8999999999998532 3567788899999
Q ss_pred HHHhhhcCCCcccHHHHHHHHH
Q psy18185 148 ALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 148 ~~~a~~~g~~~It~~~V~~~~~ 169 (190)
..+|+..|.+.|+.++|..++.
T Consensus 483 ~~~A~~~~~~~I~~~~V~~Ai~ 504 (509)
T PF13654_consen 483 NYWARKEGAKVITAEHVEQAIE 504 (509)
T ss_dssp HHHHHHCT-SSB-HHHHHHHHH
T ss_pred HHHHHHhCCCccCHHHHHHHHH
Confidence 9999988999999999999885
No 264
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=90.94 E-value=1.9 Score=29.17 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++...+.+.++... .+..+++++.+.+.+.+ + -++.+++..+..+|+..|+..|+..+|+-++.
T Consensus 2 ~~k~~l~~lv~~id--~~~~~~~da~~~l~~~~-e---~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~ 65 (72)
T cd07981 2 LTKRKLQELLKEID--PREQLDPDVEELLLEIA-D---DFVDDVVEDACRLAKHRKSDTLEVKDVQLHLE 65 (72)
T ss_pred CcHHHHHHHHHhhC--CCCCcCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34556667776654 34579999999999995 4 47888999999999999999999999987764
No 265
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=90.70 E-value=6.1 Score=34.20 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=72.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh---heeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL---IIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~---~i~~~~ls~~ei~ 106 (190)
.+.+++||+++|...++..|.+..+..+ ..+++..+.- ..++.. .++....-+.||.. .....-.+..++.
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~G-i~~vLvG~pr--L~~~l~---~~~~~~~rl~srv~v~~~~~~~~~d~d~~~ 239 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKTG-IGVVLVGMPR--LFKVLR---RPEDELSRLYSRVRVGKLLGEKFPDADELA 239 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhhC-ceEEEecChH--HHhccc---cchHHHHHHHHHhhhHhhhhhhhhhhHHHH
Confidence 4799999999999999999999999864 4566655310 111111 12222222334321 1111111113333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.+.... .+ ..+++++..+... ..|.+|..-.++--+...|..+|-..++.+-+.
T Consensus 240 ~~~~~~---l~-~~~~~~v~~~~~~-~~g~~~~L~~~l~~~~~~a~~~~~~~~~~~v~~ 293 (297)
T COG2842 240 EIAALV---LP-TEDELVLMQVIKE-TEGNIRRLDKILAGAVGTARSNGIKDIDKPVLQ 293 (297)
T ss_pred HHHHhh---Cc-cchHHHHHHHHHh-cchhHhHHHHHHhhhhhhhhhccccccchHHHH
Confidence 333222 22 2566777777776 589999988888888877777666666544333
No 266
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.50 E-value=11 Score=33.75 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=45.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
...+||||||.. ++-+.++..+.+.+.. .+++++. +. ......+...+..|...+.+.|+|-.|...
T Consensus 95 ~~yifLDEIq~v-~~W~~~lk~l~d~~~~-~v~itgs--------ss-~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 95 KSYIFLDEIQNV-PDWERALKYLYDRGNL-DVLITGS--------SS-SLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CceEEEecccCc-hhHHHHHHHHHccccc-eEEEECC--------ch-hhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 368999999999 4567777777777653 3555442 11 111223345788888899999999998865
No 267
>KOG0651|consensus
Probab=89.88 E-value=1.1 Score=39.38 Aligned_cols=89 Identities=27% Similarity=0.380 Sum_probs=57.0
Q ss_pred CCeEEEEecCCCCC-----------HHHHHHHHHHhhcc------CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 29 VPGVLFIDEVHMLD-----------LETFTYLHRALESA------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 29 ~~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
.+-++|+||+|... .+.|..|..++..- ..+-+|++||+ |..+.|+|+.-
T Consensus 225 ~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNr-------------pdtLdpaLlRp 291 (388)
T KOG0651|consen 225 IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNR-------------PDTLDPALLRP 291 (388)
T ss_pred CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCC-------------ccccchhhcCC
Confidence 35799999999983 24555555555421 12568999972 77787777665
Q ss_pred h---hheeccCCCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHh
Q psy18185 92 L---LIIRTTPYNQKDMEAIIKLRANT---EGHVLDDEALVTLSEI 131 (190)
Q Consensus 92 ~---~~i~~~~ls~~ei~~iL~~~~~~---~~~~i~~e~l~~i~~~ 131 (190)
. ..+..+-+++.--..|++..... .| +++++++-.+..-
T Consensus 292 GRldrk~~iPlpne~~r~~I~Kih~~~i~~~G-eid~eaivK~~d~ 336 (388)
T KOG0651|consen 292 GRLDRKVEIPLPNEQARLGILKIHVQPIDFHG-EIDDEAILKLVDG 336 (388)
T ss_pred ccccceeccCCcchhhceeeEeeccccccccc-cccHHHHHHHHhc
Confidence 4 34566666665555566655543 34 6788777777666
No 268
>PRK13695 putative NTPase; Provisional
Probab=89.76 E-value=0.78 Score=35.73 Aligned_cols=72 Identities=24% Similarity=0.245 Sum_probs=48.9
Q ss_pred CCeEEEEecCCCC---CHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh--hhheeccCCCHH
Q psy18185 29 VPGVLFIDEVHML---DLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR--LLIIRTTPYNQK 103 (190)
Q Consensus 29 ~~~Il~IDEi~~L---~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR--~~~i~~~~ls~~ 103 (190)
.+.++++||+..+ +...+..+..+++.+. .+|+++|. . ........+.+| +.++.+.+-+.+
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~--~~i~v~h~-------~----~~~~~~~~i~~~~~~~i~~~~~~~r~ 162 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDSEK--PVIATLHR-------R----SVHPFVQEIKSRPGGRVYELTPENRD 162 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhCCC--eEEEEECc-------h----hhHHHHHHHhccCCcEEEEEcchhhh
Confidence 3579999996544 4566788888886653 37777752 1 122233456555 578899999999
Q ss_pred HHHHHHHHHH
Q psy18185 104 DMEAIIKLRA 113 (190)
Q Consensus 104 ei~~iL~~~~ 113 (190)
++...+.++.
T Consensus 163 ~~~~~~~~~~ 172 (174)
T PRK13695 163 SLPFEILNRL 172 (174)
T ss_pred hHHHHHHHHH
Confidence 8888887654
No 269
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=89.75 E-value=3.9 Score=27.94 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 105 MEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 105 i~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++..+.++++.-|+ .+++.+++.+.+.. .+++..+...+..+++..|+...+..||..++.
T Consensus 8 l~~~Vaqil~~~Gf~~~~~sale~ltdi~----~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~ 69 (77)
T smart00576 8 LRIAVAQILESAGFDSFQESALETLTDIL----QSYIQELGRTAHSYAELAGRTEPNLGDVVLALE 69 (77)
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34445556666675 57899999999994 478888888888999889999999999998774
No 270
>KOG1051|consensus
Probab=89.28 E-value=2.2 Score=42.13 Aligned_cols=85 Identities=14% Similarity=0.244 Sum_probs=56.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC------------CEEEEEecCCcccc-cCCC-------------------
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA------------PIVIFATNRGRCLV-RGTD------------------- 76 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------~~iIlatn~~~~~~-~~t~------------------- 76 (190)
++.|+++|||+..+.+.++.|+.+++++.- ++||+++|.+...+ ++..
T Consensus 660 P~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k 739 (898)
T KOG1051|consen 660 PYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKK 739 (898)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhh
Confidence 458999999999999999999999997652 47888887653311 1110
Q ss_pred CC---CCC----CCCChhHhhhh-hheeccCCCHHHHHHHHHHHH
Q psy18185 77 DI---ISP----HGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRA 113 (190)
Q Consensus 77 ~~---~~~----~~l~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~ 113 (190)
.. ... +...++|..|+ .+.-|.|++.+++..+.....
T Consensus 740 ~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 740 VQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred hhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 00 001 23345677766 455788888777766665443
No 271
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=89.15 E-value=6.3 Score=34.03 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=37.3
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCCCHHHHH
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGH---VLDDEALVTLSEIGTRSTLRYVV 141 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~---~i~~e~l~~i~~~a~~gdlR~ai 141 (190)
.+++++||.+|+..++.+..+..-+ ..++.+.+.+... ++|++|...
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~-s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLS-SNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHh-cCCCHHHhc
Confidence 7899999999999999998765322 3566777777777 699998764
No 272
>KOG0744|consensus
Probab=88.70 E-value=1.9 Score=38.24 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=51.5
Q ss_pred EEEecCCCCCH---------------HHHHHHHHHhhccCC-C-EEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hh
Q psy18185 33 LFIDEVHMLDL---------------ETFTYLHRALESAIA-P-IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LI 94 (190)
Q Consensus 33 l~IDEi~~L~~---------------~~~~~L~~~~E~~~~-~-~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~ 94 (190)
+.||||+.|.. .+.|+++.-++.-+. | .+|++| + |. ...+..+|.+|+ .+
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~T---------S-Nl--~~siD~AfVDRADi~ 321 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILAT---------S-NL--TDSIDVAFVDRADIV 321 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEec---------c-ch--HHHHHHHhhhHhhhe
Confidence 34999999932 467888888876444 4 455555 2 32 345778999999 56
Q ss_pred eeccCCCHHHHHHHHHHHHHh
Q psy18185 95 IRTTPYNQKDMEAIIKLRANT 115 (190)
Q Consensus 95 i~~~~ls~~ei~~iL~~~~~~ 115 (190)
+.+-|++.+.+..+++--.++
T Consensus 322 ~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 322 FYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred eecCCccHHHHHHHHHHHHHH
Confidence 678999999999999866553
No 273
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=88.44 E-value=0.97 Score=31.24 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=34.9
Q ss_pred cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 116 EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 116 ~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
.|+.++++++..|++.+ .+++.++-.-+...|+..|++.|+.+||.=
T Consensus 22 ~~~~~s~~~i~al~ELv----~~q~~~~a~DLe~FAkHA~R~tI~~dDV~L 68 (76)
T PF15630_consen 22 KGVEVSPQFIAALTELV----YKQLENLAKDLEAFAKHAGRSTINMDDVKL 68 (76)
T ss_dssp TTSEE-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHTT-SEE-HHHHHH
T ss_pred cCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCeecHHHHHH
Confidence 58899999999999994 567766666666667777889999999973
No 274
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=88.27 E-value=3.4 Score=27.02 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
..-+..+++.. ..+..++.|+..++.+.+ + .....+...+...++..+++.|+.+||..++
T Consensus 5 ~a~vkri~k~~--~~~~~vs~ea~~~i~~a~-e---~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 5 LARVKRIMKSD--PDVMRVSKEAVEAIAKAA-E---EFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHHHHT--STTSEE-HHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred hHHHHHHhccC--CCccchhHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 33455555533 234469999999999884 2 4556666777788888999999999998764
No 275
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=87.01 E-value=3.6 Score=29.42 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
++..-+..+++..... .++.+|.+.+.+.. + .++..+.+.+..+|...|+..|+.+||.-++..
T Consensus 20 Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~-e---~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~ 83 (91)
T COG2036 20 LPKAPVRRILRKAGAE---RVSSSAIEELQEAL-E---EYLEEIAEDAVELAEHAKRKTVKAEDIKLALKR 83 (91)
T ss_pred cCchHHHHHHHHHhHH---HhhHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 3334456667666544 57899999998883 3 688999999999999999999999999988753
No 276
>KOG0736|consensus
Probab=86.87 E-value=25 Score=34.67 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=54.5
Q ss_pred CCeEEEEecCCCCC--------HHHHHHHHHHhh---cc-CC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-h
Q psy18185 29 VPGVLFIDEVHMLD--------LETFTYLHRALE---SA-IA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-L 93 (190)
Q Consensus 29 ~~~Il~IDEi~~L~--------~~~~~~L~~~~E---~~-~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~ 93 (190)
.+.|||+-+.|.+. ...+.++...++ .. +. +++|.+|+ +...+|+++++=+ .
T Consensus 490 ~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~-------------s~~~lp~~i~~~f~~ 556 (953)
T KOG0736|consen 490 SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTS-------------SIEDLPADIQSLFLH 556 (953)
T ss_pred CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecc-------------ccccCCHHHHHhhhh
Confidence 46788888888873 245666666665 11 11 34444442 3678999999987 5
Q ss_pred heeccCCCHHHHHHHHHHHHHhcC
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEG 117 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~ 117 (190)
.+.++-++++|-.++|+.......
T Consensus 557 ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 557 EIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred hccCCCCCHHHHHHHHHHHHhccc
Confidence 789999999999999999886653
No 277
>KOG2543|consensus
Probab=86.79 E-value=19 Score=32.59 Aligned_cols=112 Identities=17% Similarity=0.241 Sum_probs=64.5
Q ss_pred EEEEecCCCCC---HHHHHHHHHHhhccCCC--EEEEEecCCcccccCCCCCCCCCCCChhHhhhh-----hheeccCCC
Q psy18185 32 VLFIDEVHMLD---LETFTYLHRALESAIAP--IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-----LIIRTTPYN 101 (190)
Q Consensus 32 Il~IDEi~~L~---~~~~~~L~~~~E~~~~~--~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-----~~i~~~~ls 101 (190)
++++|.+|.+. ...++.|.++-|--..| .|+++... .+.-..++. ..+.|+.|+
T Consensus 118 ~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~----------------~e~~y~~n~g~~~i~~l~fP~Ys 181 (438)
T KOG2543|consen 118 FLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS----------------CEKQYLINTGTLEIVVLHFPQYS 181 (438)
T ss_pred EEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc----------------cHHHhhcccCCCCceEEecCCCC
Confidence 66699999994 45677777777754443 34443311 111223321 467999999
Q ss_pred HHHHHHHHHHHHHhcCCCCC----HHHHHHHHHh---cCCCCHHHHHHHHHHHH-HHhhhcCCCcccHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLD----DEALVTLSEI---GTRSTLRYVVQLLTPAA-LTAKTNGRTAISKQD 163 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~----~e~l~~i~~~---a~~gdlR~ai~lL~~~~-~~a~~~g~~~It~~~ 163 (190)
.+++..|+.+-- -| ... ..-+..+.+. +++ |++....+++.+. -+.+.--++.|+..+
T Consensus 182 ~~e~~~Il~~~~--p~-~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~wpky~epi~~~~i~~~d 247 (438)
T KOG2543|consen 182 VEETQVILSRDN--PG-KRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAWPKYCEPITKGKIDPTD 247 (438)
T ss_pred HHHHHHHHhcCC--cc-ccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhccccccCCCChhH
Confidence 999999997431 11 222 2333334333 234 8888777777666 344443444566666
No 278
>KOG0735|consensus
Probab=85.48 E-value=20 Score=35.15 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=61.3
Q ss_pred CeEEEEecCCCCCH-----------HHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh---
Q psy18185 30 PGVLFIDEVHMLDL-----------ETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--- 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--- 93 (190)
+-|+|.||.|.+.+ ...|-|+.-++...+ .++|+++ |. .|..+.|+++....
T Consensus 761 PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aa---------Ts---RpdliDpALLRpGRlD~ 828 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAA---------TS---RPDLIDPALLRPGRLDK 828 (952)
T ss_pred CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEe---------cC---CccccCHhhcCCCccce
Confidence 57999999999943 577888877775443 4555555 22 37788888876542
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGT---RSTLRYVVQLLTPA 147 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~---~gdlR~ai~lL~~~ 147 (190)
.+.-+.+++.+--+||+-....... =++--++.++..+. ..|+...+.-.+.+
T Consensus 829 ~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~ 884 (952)
T KOG0735|consen 829 LVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYNAQLA 884 (952)
T ss_pred eeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHHHHHH
Confidence 2333445566666677655443221 12223667777631 22555444433333
No 279
>KOG3334|consensus
Probab=85.18 E-value=6.9 Score=30.30 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=46.9
Q ss_pred HHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 112 RANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 112 ~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+.+..|+ ++++.++..+.++| .||.-.+|+.|..++...++..|+.++|+-++..
T Consensus 22 iL~s~GI~eyEprVi~qlLefa----~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~ 77 (148)
T KOG3334|consen 22 ILKSLGIQEYEPRVINQLLEFA----YRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQM 77 (148)
T ss_pred HHHHcCccccChHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 3444566 68999999999995 7999999999999998888899999999998854
No 280
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=84.99 E-value=23 Score=30.22 Aligned_cols=116 Identities=25% Similarity=0.299 Sum_probs=73.3
Q ss_pred CeEEEEecCCCC-CHHHHHHHHHHhhccCC-----CEEEEEecCC---cccccCCCCCCCCCCCC--------hhHhhhh
Q psy18185 30 PGVLFIDEVHML-DLETFTYLHRALESAIA-----PIVIFATNRG---RCLVRGTDDIISPHGIP--------LDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L-~~~~~~~L~~~~E~~~~-----~~iIlatn~~---~~~~~~t~~~~~~~~l~--------~~l~SR~ 92 (190)
+-|||.||.-.= +.+.+-+|-.++|.+-. ++|-.++|+- ...+.+.++ +-..+. ..+-+|+
T Consensus 140 kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~--~~~eih~~eaveEKlSlSDRF 217 (287)
T COG2607 140 KFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEG--STGEIHPSEAVEEKLSLSDRF 217 (287)
T ss_pred eEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCC--cccccChhHHHHHhhchhhhc
Confidence 468889987444 34677777778875322 2333344432 001111110 111222 1466776
Q ss_pred -hheeccCCCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 93 -LIIRTTPYNQKDMEAIIKLRANTEGHVLDD-----EALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 93 -~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~-----e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
+-+.|.|.+.++--.++...+++.|+.+++ +|+++-..++ +.+-|.|.+..+..+
T Consensus 218 GLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg-~RSGR~A~QF~~~~~ 278 (287)
T COG2607 218 GLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRG-GRSGRVAWQFIRDLA 278 (287)
T ss_pred ceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCccHhHHHHHHHHH
Confidence 678999999999999999999999999877 4555555663 557799988887654
No 281
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=84.93 E-value=9.7 Score=25.76 Aligned_cols=62 Identities=26% Similarity=0.236 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 104 DMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 104 ei~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
-++..+...+...|+ ..++.+++.+...+ .++..++...+..+++..|+...++.||..++.
T Consensus 7 ~l~~~va~il~~~GF~~~~~~al~~Ltdi~----~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 7 LLRRSVAQILKHAGFDSASPSALDTLTDIL----QRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 345555566667787 48899999999994 477777788888888888999999999998774
No 282
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=84.93 E-value=1.7 Score=43.71 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc---cCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES---AIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~---~~~~~iIlat 65 (190)
.++|+|||||..+...+.+|.++++. ...+++++++
T Consensus 594 ~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSA 632 (1110)
T TIGR02562 594 SSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSA 632 (1110)
T ss_pred CCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 58999999999999999999999983 2236677766
No 283
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=84.88 E-value=13 Score=34.36 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=25.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI 57 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~ 57 (190)
.|||||||.-.......++|..=+|++.
T Consensus 284 ~GVLFLDElpef~~~iLe~LR~PLE~g~ 311 (490)
T COG0606 284 NGVLFLDELPEFKRSILEALREPLENGK 311 (490)
T ss_pred CCEEEeeccchhhHHHHHHHhCccccCc
Confidence 3899999999999999999999999765
No 284
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=84.78 E-value=0.87 Score=34.99 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA 58 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~ 58 (190)
..+..++.+...+..++........+-+++|||+|.++...+.+|..+.+....
T Consensus 126 ~~~~~~~~l~~~l~~~l~~~~~~~~~~vlviDd~d~~~~~~~~~l~~l~~~~~~ 179 (185)
T PF13191_consen 126 DPDSLEDRLEELLREILRELAARRKPLVLVIDDLDWADPASLDLLRALARRLQN 179 (185)
T ss_dssp -HHHHH----HHHHHHHTTS-SE---EEEEEETTTHHHTTHHHHHHH-------
T ss_pred CHHHHHhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcHHHHHHHhccccccc
Confidence 344555555566666543222211236888999999988888888887776544
No 285
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=84.64 E-value=1.3 Score=33.59 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=17.0
Q ss_pred CeEEEEecCCCCCHHH-HHHHHH
Q psy18185 30 PGVLFIDEVHMLDLET-FTYLHR 51 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~-~~~L~~ 51 (190)
..++|+||+|+..... +..+..
T Consensus 147 ~~~vI~DEaH~~~~~~~~~~i~~ 169 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDSSYREIIE 169 (184)
T ss_dssp ESEEEEETGGCTHHHHHHHHHHH
T ss_pred CCEEEEehhhhcCCHHHHHHHHc
Confidence 4799999999997766 555544
No 286
>KOG0736|consensus
Probab=84.16 E-value=21 Score=35.18 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=50.7
Q ss_pred CeEEEEecCCCCCH-------------HHHHHHHHHhhc----cCCCEE-EEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 30 PGVLFIDEVHMLDL-------------ETFTYLHRALES----AIAPIV-IFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-------------~~~~~L~~~~E~----~~~~~i-Ilatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
+-|||.||+|.|.+ ...+-|+--++. +..++| |+|||+ |..+.|+++..
T Consensus 765 PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR-------------PDLLDpALLRP 831 (953)
T KOG0736|consen 765 PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR-------------PDLLDPALLRP 831 (953)
T ss_pred CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC-------------ccccChhhcCC
Confidence 57999999999954 233344444432 223455 456652 78888998876
Q ss_pred hh---heeccCCCHHH-HHHHHHHHHHhcCCCCCHHH-HHHHHHhc
Q psy18185 92 LL---IIRTTPYNQKD-MEAIIKLRANTEGHVLDDEA-LVTLSEIG 132 (190)
Q Consensus 92 ~~---~i~~~~ls~~e-i~~iL~~~~~~~~~~i~~e~-l~~i~~~a 132 (190)
.. .+.+.+..+++ -..+|+...++ +.+++++ +..||+.|
T Consensus 832 GRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~c 875 (953)
T KOG0736|consen 832 GRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKC 875 (953)
T ss_pred CccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhC
Confidence 53 45566665554 44455433333 2333332 56677774
No 287
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=84.03 E-value=4.5 Score=26.99 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 104 DMEAIIKLRANTEG--HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 104 ei~~iL~~~~~~~~--~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
-+..+++....+.+ ..++.+++.++.... + -...++++.|..++...++..|+..|+..+..
T Consensus 10 ~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~-E---~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r 73 (75)
T PF00125_consen 10 PFSRLLREIGEEILSKYRISSEALVALQSVL-E---YLLVEILEEAGNLARHAKRKTITPRDIQLAVR 73 (75)
T ss_dssp HHHHHHHHHHHTTSSSSEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHH
T ss_pred EEeeeeehhhcccccccccccccchhhhhhh-h---hhhhhhhhHHHHHHhhcCCcEecHHHHHHHHh
Confidence 45566666655433 579999999999883 4 25677888888888888889999999998764
No 288
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=83.85 E-value=1.7 Score=38.63 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=38.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCCC-------------hhHhhhhhhe
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIP-------------LDLLDRLLII 95 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l~-------------~~l~SR~~~i 95 (190)
.|||+||.|-=+..-.-.|.++++.- .++++|.++|. +|..+- ..|.++|.++
T Consensus 129 ~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~------------~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv 196 (362)
T PF03969_consen 129 RLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNR------------PPEDLYKNGLQRERFLPFIDLLKRRCDVV 196 (362)
T ss_pred CEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCC------------ChHHHcCCcccHHHHHHHHHHHHhceEEE
Confidence 69999999999887666676676642 23566666652 355551 2467778777
Q ss_pred eccCC
Q psy18185 96 RTTPY 100 (190)
Q Consensus 96 ~~~~l 100 (190)
.+..-
T Consensus 197 ~ld~~ 201 (362)
T PF03969_consen 197 ELDGG 201 (362)
T ss_pred EecCC
Confidence 76543
No 289
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=83.61 E-value=5.2 Score=31.19 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=20.6
Q ss_pred cCCeEEEEecCCCCCHHHHHH--HHHHhhccCCCEEEEEe
Q psy18185 28 LVPGVLFIDEVHMLDLETFTY--LHRALESAIAPIVIFAT 65 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~--L~~~~E~~~~~~iIlat 65 (190)
..+.++|+||+|..++....+ +++.+++.....+|+.|
T Consensus 94 ~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mT 133 (148)
T PF07652_consen 94 KNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMT 133 (148)
T ss_dssp TS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred cCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEe
Confidence 456899999999999864433 33333343334455555
No 290
>PRK09694 helicase Cas3; Provisional
Probab=83.40 E-value=1.7 Score=43.01 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhc---cCCCEEEEEe
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALES---AIAPIVIFAT 65 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~---~~~~~iIlat 65 (190)
..++|||||||..+......|.++++. ...+++++++
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSA 478 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSA 478 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 347999999999988666666666653 3346666666
No 291
>KOG0741|consensus
Probab=82.39 E-value=18 Score=34.31 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=61.5
Q ss_pred eEEEEecCCCCC----------HHHHHHHHHHhhccCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-----
Q psy18185 31 GVLFIDEVHMLD----------LETFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL----- 92 (190)
Q Consensus 31 ~Il~IDEi~~L~----------~~~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~----- 92 (190)
.++++|++++|- .....+|.-++-..++ -.+|++| |+ ..+++++|
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~T---------TS--------~~~vL~~m~i~~~ 662 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGT---------TS--------RREVLQEMGILDC 662 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEec---------cc--------HHHHHHHcCHHHh
Confidence 799999999982 2445555555555433 4677777 32 12455554
Q ss_pred --hheeccCCCH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Q psy18185 93 --LIIRTTPYNQ-KDMEAIIKLRANTEGHVLDDEALVTLSEIG----TRSTLRYVVQLLTPAA 148 (190)
Q Consensus 93 --~~i~~~~ls~-~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a----~~gdlR~ai~lL~~~~ 148 (190)
..+.++.++. +++..+|.+. ++ ++++....++..- ..-++.+.+.+++.+.
T Consensus 663 F~~~i~Vpnl~~~~~~~~vl~~~----n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 663 FSSTIHVPNLTTGEQLLEVLEEL----NI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred hhheeecCccCchHHHHHHHHHc----cC-CCcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 3678899988 7888887643 42 5566666666551 1235778888888775
No 292
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=82.19 E-value=1.5 Score=36.03 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI 57 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~ 57 (190)
.||||+||+..+++...++|+..+|++.
T Consensus 107 ~GVLflDE~~ef~~~vld~Lr~ple~g~ 134 (206)
T PF01078_consen 107 RGVLFLDELNEFDRSVLDALRQPLEDGE 134 (206)
T ss_dssp TSEEEECETTTS-HHHHHHHHHHHHHSB
T ss_pred CCEEEechhhhcCHHHHHHHHHHHHCCe
Confidence 5899999999999999999999999763
No 293
>PRK04296 thymidine kinase; Provisional
Probab=81.23 E-value=8.8 Score=30.47 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=25.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..+|+|||+|.++.+....|.+.+... +..+|+++.
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l~~~-g~~vi~tgl 114 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVLDDL-GIPVICYGL 114 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHHc-CCeEEEEec
Confidence 479999999999887666666665443 355666664
No 294
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=80.52 E-value=5.4 Score=38.59 Aligned_cols=86 Identities=8% Similarity=-0.030 Sum_probs=54.6
Q ss_pred CCeEEEEecCCCCCH----HHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCC-----hhHhhhhhheec
Q psy18185 29 VPGVLFIDEVHMLDL----ETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIP-----LDLLDRLLIIRT 97 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~----~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~-----~~l~SR~~~i~~ 97 (190)
.+++++|||+|.+.. .....+.+......+ ..++++|.. +..+. .++.+-|...-+
T Consensus 637 ~~~~~viDEaw~ll~~~~~~~~~~i~~~~r~~RK~g~~~~~~TQ~-------------~~D~~~~~~~~~il~n~~~~i~ 703 (797)
T TIGR02746 637 RRKICIIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQG-------------IEDFYSSPEARAAYANSDWKII 703 (797)
T ss_pred CceEEEEecHHHHhhcccHHHHHHHHHHHHHHhhcCceEEEEEec-------------HHHhccCHHHHHHHhcccceee
Confidence 368999999999965 344555555544433 568888841 33332 356677754444
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
-+.+++++.++++ ..++.++++..++|...
T Consensus 704 L~~~~~~~~~~~~----~~~~~ls~~e~~~l~~~ 733 (797)
T TIGR02746 704 LRQSAESIAKLKA----ENPFTFSPFEKRLIKSL 733 (797)
T ss_pred ecCCHHHHHHHHh----hCCCCCCHHHHHHHhcc
Confidence 4566666665432 23457889999988876
No 295
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=80.27 E-value=1.6 Score=30.83 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTY 48 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~ 48 (190)
..+++++||+|.+.......
T Consensus 103 ~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 103 KLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred cCCEEEEeCHHHHhhcchHH
Confidence 35799999999997654444
No 296
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=80.13 E-value=20 Score=30.06 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=44.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
...++++||+-.- .--...+..++-.+.. ..+|+++. .+..+|+++|+-+..+-+-+.+..++.
T Consensus 98 ~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q-------------~~~~lp~~iR~n~~y~i~~~~s~~dl~ 163 (241)
T PF04665_consen 98 PRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQ-------------SYFHLPPNIRSNIDYFIIFNNSKRDLE 163 (241)
T ss_pred CCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEee-------------ecccCCHHHhhcceEEEEecCcHHHHH
Confidence 3568889998641 1122334445544433 55677774 378899999998865554467888887
Q ss_pred HHHHHH
Q psy18185 107 AIIKLR 112 (190)
Q Consensus 107 ~iL~~~ 112 (190)
.+++..
T Consensus 164 ~i~~~~ 169 (241)
T PF04665_consen 164 NIYRNM 169 (241)
T ss_pred HHHHhc
Confidence 666543
No 297
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=79.98 E-value=4.1 Score=28.62 Aligned_cols=37 Identities=35% Similarity=0.332 Sum_probs=23.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHH---------hhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRA---------LESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~---------~E~~~~~~iIlatn 66 (190)
+.+++|||++.+........... ........+|+++|
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 48999999999987655554332 22222356777775
No 298
>PRK06921 hypothetical protein; Provisional
Probab=79.78 E-value=7.3 Score=32.90 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=20.6
Q ss_pred CeEEEEecCCC-------CCH----HHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHM-------LDL----ETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-------L~~----~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..+|+|||+|. ++. ..+..++.-++.. .| +|++||
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~-k~-tIitsn 223 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNH-KP-ILISSE 223 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCC-CC-EEEECC
Confidence 37999999965 333 2344444444433 24 567775
No 299
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=79.67 E-value=2.1 Score=33.65 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=38.5
Q ss_pred CeEEEEecCCCC---CHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh--hhheeccCCCHHH
Q psy18185 30 PGVLFIDEVHML---DLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR--LLIIRTTPYNQKD 104 (190)
Q Consensus 30 ~~Il~IDEi~~L---~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR--~~~i~~~~ls~~e 104 (190)
..+++|||+-.| ++.-+.++.++++.+ . .+|.+-++ . +...+...+++| +.++.+.+-+.++
T Consensus 96 ~~liviDEIG~mEl~~~~F~~~v~~~l~s~-~-~vi~vv~~-------~----~~~~~l~~i~~~~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 96 SDLIVIDEIGKMELKSPGFREAVEKLLDSN-K-PVIGVVHK-------R----SDNPFLEEIKRRPDVKIFEVTEENRDA 162 (168)
T ss_dssp CHEEEE---STTCCC-CHHHHHHHHHHCTT-S-EEEEE--S-------S------SCCHHHHHTTTTSEEEE--TTTCCC
T ss_pred CCEEEEeccchhhhcCHHHHHHHHHHHcCC-C-cEEEEEec-------C----CCcHHHHHHHhCCCcEEEEeChhHHhh
Confidence 379999999999 567888999999943 2 24444421 1 122355678888 7888888877766
Q ss_pred HHH
Q psy18185 105 MEA 107 (190)
Q Consensus 105 i~~ 107 (190)
+..
T Consensus 163 l~~ 165 (168)
T PF03266_consen 163 LPE 165 (168)
T ss_dssp HHH
T ss_pred Hhh
Confidence 643
No 300
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=79.25 E-value=2.2 Score=34.24 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=27.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..++||||+..++...+..|++..+.. ...+|+..+
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~~-~~klilvGD 129 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKKS-GAKLILVGD 129 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T--T-EEEEEE-
T ss_pred ccEEEEecccccCHHHHHHHHHHHHhc-CCEEEEECC
Confidence 479999999999999999999998883 356888883
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.14 E-value=41 Score=33.37 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=66.8
Q ss_pred eEEEEecCCCCC-HHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhhee----ccCCCHHH
Q psy18185 31 GVLFIDEVHMLD-LETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIR----TTPYNQKD 104 (190)
Q Consensus 31 ~Il~IDEi~~L~-~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~----~~~ls~~e 104 (190)
-.++|||-|..+ +.....+..+++..|. .++|++|. + . |+..+ ..+|=|-..++ -=+++.+|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR--------~-r--P~l~l-a~lRlr~~llEi~~~~Lrf~~eE 198 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR--------S-R--PQLGL-ARLRLRDELLEIGSEELRFDTEE 198 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec--------c-C--CCCcc-cceeehhhHHhcChHhhcCChHH
Confidence 588899999996 4567777777887655 67777774 2 1 33333 23443433222 22578888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPA 147 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~ 147 (190)
..+.+..+ .|..++...+..|.+. ++| .--|+++.-.+
T Consensus 199 ~~~fl~~~---~~l~Ld~~~~~~L~~~-teG-W~~al~L~aLa 236 (894)
T COG2909 199 AAAFLNDR---GSLPLDAADLKALYDR-TEG-WAAALQLIALA 236 (894)
T ss_pred HHHHHHHc---CCCCCChHHHHHHHhh-ccc-HHHHHHHHHHH
Confidence 88888755 4578999999999999 454 66676665443
No 302
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=78.92 E-value=3.8 Score=31.87 Aligned_cols=36 Identities=28% Similarity=0.226 Sum_probs=29.9
Q ss_pred eEEEEecCC-CCCHHHHHHHHHHhhccCC--CEEEEEec
Q psy18185 31 GVLFIDEVH-MLDLETFTYLHRALESAIA--PIVIFATN 66 (190)
Q Consensus 31 ~Il~IDEi~-~L~~~~~~~L~~~~E~~~~--~~iIlatn 66 (190)
++++|||.+ +|++..|..|.+.+..... ..+|++||
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 799999996 4689999999998876543 68999996
No 303
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=78.90 E-value=8.7 Score=33.74 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=45.7
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 109 IKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 109 L~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
++.+++.-|+ .+++++...++... +- .+-++++.|...++..+++++|.+||..++.+
T Consensus 5 i~~ia~~~Gi~~~~~~a~~~La~~~-e~---~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~ 63 (343)
T cd08050 5 IKLIAESLGIDSLSDEVAQLLAEDV-EY---RLREIIQEAAKFMRHSKRRKLTTSDVNHALRL 63 (343)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 4445566777 89999999999984 43 35566777777787888999999999999865
No 304
>PRK08116 hypothetical protein; Validated
Probab=78.34 E-value=2.3 Score=35.95 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=35.6
Q ss_pred eEEEEecCC--CCCHHHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCC----ChhHhhh----hhheecc
Q psy18185 31 GVLFIDEVH--MLDLETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGI----PLDLLDR----LLIIRTT 98 (190)
Q Consensus 31 ~Il~IDEi~--~L~~~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l----~~~l~SR----~~~i~~~ 98 (190)
.+|+|||++ ..+...+..|..+++.. ....+|++||. +|..+ ...+.|| |..+.|.
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~------------~~~eL~~~~~~ri~sRl~e~~~~v~~~ 247 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL------------SLEELKNQYGKRIYDRILEMCTPVENE 247 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC------------CHHHHHHHHhHHHHHHHHHcCEEEEee
Confidence 799999994 45666666666666632 11237777752 23333 3457777 5566666
Q ss_pred CCC
Q psy18185 99 PYN 101 (190)
Q Consensus 99 ~ls 101 (190)
..+
T Consensus 248 g~d 250 (268)
T PRK08116 248 GKS 250 (268)
T ss_pred CcC
Confidence 544
No 305
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=77.99 E-value=5.1 Score=34.00 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=44.4
Q ss_pred eEEEEecCCCCCH------HHHHHHHHHhhccC-----C--------CEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 31 GVLFIDEVHMLDL------ETFTYLHRALESAI-----A--------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 31 ~Il~IDEi~~L~~------~~~~~L~~~~E~~~-----~--------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
-|+||||++.-.+ .....|..+++.++ . ..++.|++ +....+.+++-|.+.
T Consensus 102 lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~----------p~~Gr~~is~R~~r~ 171 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMN----------PTGGRNPISPRFLRH 171 (272)
T ss_dssp EEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEES----------STTT--SHHHHHHTT
T ss_pred EEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecC----------CCCCCCCCChHHhhh
Confidence 3888999998854 35578888887532 1 24555553 100122356778888
Q ss_pred hhheeccCCCHHHHHHHHHHHHH
Q psy18185 92 LLIIRTTPYNQKDMEAIIKLRAN 114 (190)
Q Consensus 92 ~~~i~~~~ls~~ei~~iL~~~~~ 114 (190)
+.++.+++++++.+..|-.....
T Consensus 172 f~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 172 FNILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEEE----TCCHHHHHHHHHHH
T ss_pred eEEEEecCCChHHHHHHHHHHHh
Confidence 89999999999998888776654
No 306
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=77.49 E-value=22 Score=25.07 Aligned_cols=63 Identities=8% Similarity=0.193 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.++...+..+.+ ..|+ -++.++.+.+.+.. + -++.+++..+..+++..|+..||.+||.-++.
T Consensus 13 gi~k~~I~RLar----r~GvkRIS~d~y~e~~~~l-~---~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alk 76 (85)
T cd00076 13 GITKPAIRRLAR----RGGVKRISGGVYDEVRNVL-K---SYLEDVIRDAVTYTEHAKRKTVTAMDVVYALK 76 (85)
T ss_pred cCCHHHHHHHHH----HcCcchhhHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 355554544443 3344 47777777777762 2 35666777788888888999999999987764
No 307
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=77.04 E-value=11 Score=27.00 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 119 VLDDEALVTLSEIGT--RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 119 ~i~~e~l~~i~~~a~--~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.+++++...+-.... +=+.|-...+|..|..+|-..|...|+.++|.+++.
T Consensus 42 ~l~~~~~~~l~~~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 42 PLSSEAKKLLEQAAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred CCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 344544444444321 235677777777777777778899999999999986
No 308
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=76.16 E-value=39 Score=28.65 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=66.2
Q ss_pred ccchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC------------------------
Q psy18185 3 AYKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA------------------------ 58 (190)
Q Consensus 3 ~~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~------------------------ 58 (190)
.|...+.|+++...+.++--+++ +.++++.|.|.....-...++.++..+..
T Consensus 67 ~y~~~~f~~dLk~~~~~ag~~~~----~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~ 142 (268)
T PF12780_consen 67 GYSIKDFKEDLKKALQKAGIKGK----PTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEG 142 (268)
T ss_dssp TTHHHHHHHHHHHHHHHHHCS-S-----EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT
T ss_pred CcCHHHHHHHHHHHHHHHhccCC----CeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcC
Confidence 47778888888888777543433 36888999988865444444444432210
Q ss_pred -------------------CEEEEEecCCcccccCCCCCCCC-CCC----ChhHhhhhhheeccCCCHHHHHHHHHHHHH
Q psy18185 59 -------------------PIVIFATNRGRCLVRGTDDIISP-HGI----PLDLLDRLLIIRTTPYNQKDMEAIIKLRAN 114 (190)
Q Consensus 59 -------------------~~iIlatn~~~~~~~~t~~~~~~-~~l----~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~ 114 (190)
-++|++-. |..+ ... -|++.++|.+.-|.+-+.+.+..+-....+
T Consensus 143 ~~~~~~~~~~~F~~rvr~nLHivl~~s-----------p~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 143 ISDSRESLYEFFIERVRKNLHIVLCMS-----------PVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp --SSHHHHHHHHHHHHCCCEEEEEEES-----------TTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCC
T ss_pred CCCchHHHHHHHHHHHHhheeEEEEEC-----------CCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHH
Confidence 14666552 1111 111 267888899999999999988888776554
Q ss_pred hcCCCCCHHHHHHHHHh
Q psy18185 115 TEGHVLDDEALVTLSEI 131 (190)
Q Consensus 115 ~~~~~i~~e~l~~i~~~ 131 (190)
... .++++..+.++..
T Consensus 212 ~~~-~~~~~~~~~l~~~ 227 (268)
T PF12780_consen 212 DIE-LLSEELKKSLAEI 227 (268)
T ss_dssp HHH-TSS--HHHHHHHH
T ss_pred hhc-ccchhHHHHHHHH
Confidence 422 1455555555555
No 309
>PLN00035 histone H4; Provisional
Probab=76.12 E-value=24 Score=25.82 Aligned_cols=67 Identities=6% Similarity=0.101 Sum_probs=47.3
Q ss_pred eccCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 96 RTTPYNQKDMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
.+..++...+..++++ .|+ -|++++.+.+.+.. + -++-+++..+..+++..++..||.+||.-++.-
T Consensus 26 ~i~~ipk~~IrRLARr----~GvkRIS~~ay~elr~vl-e---~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 26 NIQGITKPAIRRLARR----GGVKRISGLIYEETRGVL-K---IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
T ss_pred hhccCCHHHHHHHHHH----cCcccchHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 3445666666655553 333 47888888887772 3 356667777888888889999999999888753
No 310
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=75.95 E-value=8.5 Score=25.91 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.+.+.++.. ..+..+++++.+.+.+.| + -..-+.+..+..+|+.+|...++..+|+-.++
T Consensus 4 ~l~~Lv~~i--Dp~~~ld~~vee~Ll~la-d---dFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 4 KLQELVKQI--DPNEKLDPDVEELLLELA-D---DFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHHHCC---SS----HHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHHHc--CCCCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 444455443 245679999999999996 3 25556778888899999999999999987664
No 311
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=75.93 E-value=3.7 Score=39.71 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
...+|+|||+++++...+..|++.+.. ...+|+.+.
T Consensus 416 ~~~llIvDEaSMvd~~~~~~Ll~~~~~--~~rlilvGD 451 (720)
T TIGR01448 416 DCDLLIVDESSMMDTWLALSLLAALPD--HARLLLVGD 451 (720)
T ss_pred cCCEEEEeccccCCHHHHHHHHHhCCC--CCEEEEECc
Confidence 457999999999999999999987754 356888884
No 312
>KOG1051|consensus
Probab=75.76 E-value=3.6 Score=40.76 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCH--------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCC
Q psy18185 7 DKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL--------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDI 78 (190)
Q Consensus 7 ~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~--------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~ 78 (190)
.++.+.+...+++.-..++ .-||||||+|-+.. ++.+.|-..+..+ ...+|++|+ .+.+
T Consensus 262 ge~E~rlk~l~k~v~~~~~----gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg-~l~~IGatT--------~e~Y 328 (898)
T KOG1051|consen 262 GEFEERLKELLKEVESGGG----GVILFLGELHWLVGSGSNYGAIDAANLLKPLLARG-GLWCIGATT--------LETY 328 (898)
T ss_pred hHHHHHHHHHHHHHhcCCC----cEEEEecceeeeecCCCcchHHHHHHhhHHHHhcC-CeEEEeccc--------HHHH
Confidence 3444455555554322221 25888999999943 3444444444443 477888883 2212
Q ss_pred CCCCCCChhHhhhhhheeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q psy18185 79 ISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIG-----TRSTLRYVVQLLTPAAL 149 (190)
Q Consensus 79 ~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a-----~~gdlR~ai~lL~~~~~ 149 (190)
.....-.|++-.|.+.+.++-++.++...+|..-.+. .|+.++++++...+... -++=...|+.+.+.+..
T Consensus 329 ~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a 408 (898)
T KOG1051|consen 329 RKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAA 408 (898)
T ss_pred HHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHH
Confidence 1111224789999988888888888766666544433 45677777766655552 11223567777776664
No 313
>PRK10536 hypothetical protein; Provisional
Probab=75.27 E-value=4.7 Score=34.31 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=27.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..+++||||+++++......++.-+.++ ..+|++++
T Consensus 176 ~~~~vIvDEaqn~~~~~~k~~ltR~g~~--sk~v~~GD 211 (262)
T PRK10536 176 ENAVVILDEAQNVTAAQMKMFLTRLGEN--VTVIVNGD 211 (262)
T ss_pred cCCEEEEechhcCCHHHHHHHHhhcCCC--CEEEEeCC
Confidence 4479999999999998888777666554 45777774
No 314
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=74.80 E-value=2.4 Score=32.00 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCCHH----HHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLE----TFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~----~~~~L~~~~E~~~~~~iIlat 65 (190)
.+++++||+|.+... ....+.+.+.....+.+++.|
T Consensus 120 ~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp ESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 489999999999762 233344444444334455444
No 315
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=74.64 E-value=12 Score=30.62 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=28.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc-cCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES-AIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~-~~~~~iIlat 65 (190)
..+++|||++.++++....|.++-+. + ..+|.++
T Consensus 83 ~~~v~IDEaQF~~~~~v~~l~~lad~lg--i~Vi~~G 117 (201)
T COG1435 83 VDCVLIDEAQFFDEELVYVLNELADRLG--IPVICYG 117 (201)
T ss_pred cCEEEEehhHhCCHHHHHHHHHHHhhcC--CEEEEec
Confidence 47999999999999999999999998 4 3366666
No 316
>KOG0477|consensus
Probab=73.85 E-value=53 Score=31.85 Aligned_cols=64 Identities=23% Similarity=0.198 Sum_probs=38.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC--------------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA--------------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--------------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
.+||-+|||.|.|+..--..+..+||...- ..+|.|+|-+.-+-+++-....--.+..+++||+
T Consensus 546 DkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRF 623 (854)
T KOG0477|consen 546 DKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRF 623 (854)
T ss_pred cCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhc
Confidence 357888999999988777788888886431 2577777643222222210000012345789985
No 317
>KOG0743|consensus
Probab=73.84 E-value=35 Score=31.36 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=49.6
Q ss_pred CeEEEEecCCCCC----H--------------HHHHHHHHHhhccCC-----CEEEEEecCCcccccCCCCCCCCCCCCh
Q psy18185 30 PGVLFIDEVHMLD----L--------------ETFTYLHRALESAIA-----PIVIFATNRGRCLVRGTDDIISPHGIPL 86 (190)
Q Consensus 30 ~~Il~IDEi~~L~----~--------------~~~~~L~~~~E~~~~-----~~iIlatn~~~~~~~~t~~~~~~~~l~~ 86 (190)
+.||+|.|||.-- . =.++-|+.+++.-.+ -++|++|| .+.++.|
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTN-------------h~EkLDP 353 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTN-------------HKEKLDP 353 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecC-------------ChhhcCH
Confidence 3699999999871 1 124568888875333 35666664 3789999
Q ss_pred hHhhhh---hheeccCCCHHHHHHHHHHHH
Q psy18185 87 DLLDRL---LIIRTTPYNQKDMEAIIKLRA 113 (190)
Q Consensus 87 ~l~SR~---~~i~~~~ls~~ei~~iL~~~~ 113 (190)
+|..+. ..+.+.-.+.++.+....+-.
T Consensus 354 ALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 354 ALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred hhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 999964 568888888888776666553
No 318
>COG1485 Predicted ATPase [General function prediction only]
Probab=73.33 E-value=4.7 Score=35.84 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=26.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhc--cCCCEEEEEec
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALES--AIAPIVIFATN 66 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~--~~~~~iIlatn 66 (190)
.|||+||.+-=+..-.-.|.++++. ..+++++.++|
T Consensus 132 ~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN 169 (367)
T COG1485 132 RVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSN 169 (367)
T ss_pred CEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCC
Confidence 7999999998888777777777775 22355666665
No 319
>KOG3928|consensus
Probab=72.84 E-value=74 Score=29.15 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCccccCCeEEE-EecCCCCCH-----------------HHHHHHHHHhhccCC-CEEEEEecCCccc
Q psy18185 11 KEINKVVNKYIDQGIAELVPGVLF-IDEVHMLDL-----------------ETFTYLHRALESAIA-PIVIFATNRGRCL 71 (190)
Q Consensus 11 ~~I~~~v~~~~~~~~~~~~~~Il~-IDEi~~L~~-----------------~~~~~L~~~~E~~~~-~~iIlatn~~~~~ 71 (190)
..+-+.++.....++. +|++ ||++..+.. ..-+.+.++++.... ..+|+++... .
T Consensus 300 g~llrelk~~s~~~~~----kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~--~ 373 (461)
T KOG3928|consen 300 GILLRELKRLSVQSKV----KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGV--T 373 (461)
T ss_pred HHHHHHHHHhhhhcCc----cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEeccc--c
Confidence 3444444444445554 5555 999998832 345666777776444 3566666411 1
Q ss_pred ccC------CCCCCCCCCCC---hhHhhhhhheeccCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHH
Q psy18185 72 VRG------TDDIISPHGIP---LDLLDRLLIIRTTPYNQKDMEAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLR 138 (190)
Q Consensus 72 ~~~------t~~~~~~~~l~---~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR 138 (190)
+.+ ++.+.|...++ .+.+..+.+|.+++||.+|...++.+.... +.+ -+++....+--. ++|+.+
T Consensus 374 ~~~a~~h~gv~~y~pr~llg~egfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv-~~Ee~~kql~fL-SngNP~ 451 (461)
T KOG3928|consen 374 TPSAFGHLGVAPYVPRKLLGEEGFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKV-PGEENIKQLYFL-SNGNPS 451 (461)
T ss_pred cchhccccccccCCchHhcCccchhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhc-Ccccchhhhhhh-cCCCHH
Confidence 111 11111111222 356666788999999999999999888653 221 235666667677 688884
Q ss_pred H
Q psy18185 139 Y 139 (190)
Q Consensus 139 ~ 139 (190)
.
T Consensus 452 l 452 (461)
T KOG3928|consen 452 L 452 (461)
T ss_pred H
Confidence 3
No 320
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=72.53 E-value=53 Score=27.20 Aligned_cols=85 Identities=13% Similarity=0.202 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhh-------ccCC--------------CEEEEEecCCcc
Q psy18185 12 EINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALE-------SAIA--------------PIVIFATNRGRC 70 (190)
Q Consensus 12 ~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E-------~~~~--------------~~iIlatn~~~~ 70 (190)
.+.+++......| .-+++||+|+|+.+..+.+...+. .... .-++++.|
T Consensus 73 ~l~ril~G~~~~G------aW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~n---- 142 (231)
T PF12774_consen 73 SLSRILKGLAQSG------AWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMN---- 142 (231)
T ss_dssp HHHHHHHHHHHHT-------EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-----
T ss_pred HHHHHHHHHhhcC------chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeec----
Confidence 4556666555443 588999999999877666654443 1111 12333332
Q ss_pred cccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHHHH
Q psy18185 71 LVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKL 111 (190)
Q Consensus 71 ~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~ 111 (190)
.++..-..+|..+++-++.+.+..++-+.+.+++-.
T Consensus 143 -----p~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~L~ 178 (231)
T PF12774_consen 143 -----PGYAGRSELPENLKALFRPVAMMVPDLSLIAEILLL 178 (231)
T ss_dssp -----B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHHHH
T ss_pred -----cccCCcccCCHhHHHHhheeEEeCCCHHHHHHHHHH
Confidence 122234568899999999999999988887777653
No 321
>KOG2228|consensus
Probab=71.21 E-value=12 Score=33.47 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=45.6
Q ss_pred eEEE-EecCCCCCH-HHHHHHHHHhhccC---CCE-EEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCCC
Q psy18185 31 GVLF-IDEVHMLDL-ETFTYLHRALESAI---API-VIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPYN 101 (190)
Q Consensus 31 ~Il~-IDEi~~L~~-~~~~~L~~~~E~~~---~~~-iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~ls 101 (190)
+|+| +||+|-... .-|..|+.+.+-.- .|+ +|+.|.+ .+ ....+-.-.+||+ +++-+++++
T Consensus 138 ~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr-------ld---~lE~LEKRVKSRFshr~I~m~~~~~ 207 (408)
T KOG2228|consen 138 KVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR-------LD---ILELLEKRVKSRFSHRVIFMLPSLP 207 (408)
T ss_pred eEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc-------cc---HHHHHHHHHHhhcccceeeccCCCC
Confidence 4555 789998854 56667777776432 254 5556632 10 1222335678887 466778888
Q ss_pred HHHHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRA 113 (190)
Q Consensus 102 ~~ei~~iL~~~~ 113 (190)
-.+..++.+.-.
T Consensus 208 l~~yv~l~r~ll 219 (408)
T KOG2228|consen 208 LGDYVDLYRKLL 219 (408)
T ss_pred hHHHHHHHHHHh
Confidence 888888887654
No 322
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=70.73 E-value=3.3 Score=31.18 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=12.1
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.+..
T Consensus 130 ~~~iIiDE~h~~~~ 143 (201)
T smart00487 130 VDLVILDEAHRLLD 143 (201)
T ss_pred CCEEEEECHHHHhc
Confidence 36899999999986
No 323
>PTZ00015 histone H4; Provisional
Probab=70.37 E-value=31 Score=25.18 Aligned_cols=66 Identities=5% Similarity=0.172 Sum_probs=44.7
Q ss_pred eccCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 96 RTTPYNQKDMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
..+.++...+..+++ ..|+ -|++++-+.+... .+ -++-+++..+..+++..++..||.+||.-++.
T Consensus 27 ~i~gI~k~~IrRLar----r~GvkRIS~d~y~e~r~v-le---~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 27 NIRGITKGAIRRLAR----RGGVKRISGDIYEEVRGV-LK---AFLENVVRDSTAYTEYARRKTVTAMDVVYALK 93 (102)
T ss_pred cccCCCHHHHHHHHH----HcCCccchHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 345566655555544 3344 4778777777666 22 35566777777788888899999999988774
No 324
>PRK06526 transposase; Provisional
Probab=69.74 E-value=6.3 Score=33.13 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=25.1
Q ss_pred CeEEEEecCCCC--CHHHHHHHHHHhhcc-CCCEEEEEec
Q psy18185 30 PGVLFIDEVHML--DLETFTYLHRALESA-IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L--~~~~~~~L~~~~E~~-~~~~iIlatn 66 (190)
..+|+|||+|.+ +...++.|+.+++.. ....+|++||
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn 199 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSN 199 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcC
Confidence 479999999988 466666777776531 1123777776
No 325
>COG3899 Predicted ATPase [General function prediction only]
Probab=68.85 E-value=42 Score=33.26 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=71.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC--C----CEEEEEecCCcccccCCCCCCCCCCCChhHhhh--hhheeccCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI--A----PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR--LLIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~--~----~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR--~~~i~~~~ls 101 (190)
+-|+|+||+|-.+......|-.++.... . ++....+. ...++...++. ...|.+.|++
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~--------------~~~~~~~~~~~~~i~~I~L~PL~ 220 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPL--------------RPTLGEILKSATNITTITLAPLS 220 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCc--------------cchhhHHhhcCCceeEEecCcCc
Confidence 4688999999999999999999998864 1 11222221 11223334444 3678999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
..+....+......- .....+..+.+.+. ..|++=.+-+.+....
T Consensus 221 ~~d~~~lV~~~l~~~-~~~~~p~~~~i~~k-t~GnPfFi~e~lk~l~ 265 (849)
T COG3899 221 RADTNQLVAATLGCT-KLLPAPLLELIFEK-TKGNPFFIEEFLKALY 265 (849)
T ss_pred hhhHHHHHHHHhCCc-ccccchHHHHHHHH-hcCCCccHHHHHHHHH
Confidence 999999998776442 35667788888888 5787766666665554
No 326
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=68.56 E-value=8.5 Score=26.55 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=39.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++| .+.-+.+....+..+...++.+.+|+.|+ ..+ +......+...+.-|-.+|++.+++.+.|
T Consensus 44 ~d~iiid-~~~~~~~~~~~~~~i~~~~~~~~ii~~t~--------~~~---~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 44 PDLIIID-LELPDGDGLELLEQIRQINPSIPIIVVTD--------EDD---SDEVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp ESEEEEE-SSSSSSBHHHHHHHHHHHTTTSEEEEEES--------STS---HHHHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred ceEEEEE-eeeccccccccccccccccccccEEEecC--------CCC---HHHHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 5788888 33333455566666655555555555552 110 11111223333456778999999998876
Q ss_pred H
Q psy18185 110 K 110 (190)
Q Consensus 110 ~ 110 (190)
+
T Consensus 112 ~ 112 (112)
T PF00072_consen 112 N 112 (112)
T ss_dssp H
T ss_pred C
Confidence 4
No 327
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=68.32 E-value=6.4 Score=35.16 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=26.4
Q ss_pred CeEEEEecCCCC----CHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHML----DLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L----~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
+.++||||||.+ +...+.+..+..-... +.+.+++
T Consensus 203 FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g-~~IylTA 241 (441)
T COG4098 203 FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEG-ATIYLTA 241 (441)
T ss_pred ccEEEEeccccccccCCHHHHHHHHHhhcccC-ceEEEec
Confidence 589999999998 5678888888776653 5555555
No 328
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=68.22 E-value=4.2 Score=35.53 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=22.0
Q ss_pred cCCeEEEEecCCCCCH--------HHHHHHHHHhhcc
Q psy18185 28 LVPGVLFIDEVHMLDL--------ETFTYLHRALESA 56 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~--------~~~~~L~~~~E~~ 56 (190)
..+.++|+||+|+|.. ...+.|..++..+
T Consensus 82 ~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~ 118 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRA 118 (352)
T ss_pred CcCCEEEEehhHhhhhccccccccccHHHHHHHHhcC
Confidence 3568999999999977 2346777777774
No 329
>PRK12377 putative replication protein; Provisional
Probab=67.20 E-value=16 Score=30.69 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=26.2
Q ss_pred CeEEEEecC--CCCCHHHHHHHHHHhhccC---CCEEEEEec
Q psy18185 30 PGVLFIDEV--HMLDLETFTYLHRALESAI---APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi--~~L~~~~~~~L~~~~E~~~---~~~iIlatn 66 (190)
..+|+|||+ +..+...+..|+.+++..- .| .|++||
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p-tiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS-VGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEcC
Confidence 479999999 5567778888888888532 25 455675
No 330
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=67.14 E-value=86 Score=32.02 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=57.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhc-cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh---hhheeccCCCHHHHH
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALES-AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR---LLIIRTTPYNQKDME 106 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~-~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR---~~~i~~~~ls~~ei~ 106 (190)
-+|+|||++.. +....|....+. +++..+|++|+. . .+... ..++.++.+++++-.
T Consensus 298 vLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd-------------~-----~vl~~~~~~~~~~v~~l~~~ea~ 357 (1153)
T PLN03210 298 VLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKD-------------K-----HFLRAHGIDHIYEVCLPSNELAL 357 (1153)
T ss_pred EEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCc-------------H-----HHHHhcCCCeEEEecCCCHHHHH
Confidence 47779999753 566667665553 223567777741 1 11211 157899999999998
Q ss_pred HHHHHHHHhcCCCCCH---HHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDD---EALVTLSEIGTRSTLRYVVQLLTPA 147 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~---e~l~~i~~~a~~gdlR~ai~lL~~~ 147 (190)
+++.+.|-.... .++ +....+++. ++ ++.-|+..+...
T Consensus 358 ~LF~~~Af~~~~-~~~~~~~l~~~iv~~-c~-GLPLAl~vlgs~ 398 (1153)
T PLN03210 358 EMFCRSAFKKNS-PPDGFMELASEVALR-AG-NLPLGLNVLGSY 398 (1153)
T ss_pred HHHHHHhcCCCC-CcHHHHHHHHHHHHH-hC-CCcHHHHHHHHH
Confidence 888887743321 122 344556666 34 567788777654
No 331
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=66.65 E-value=10 Score=36.77 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=31.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
+.++++||++.+..+++..++.++.....+.+++++
T Consensus 295 ~DLLIVDEAAfI~~~~l~aIlP~l~~~~~k~IiISS 330 (752)
T PHA03333 295 PDLVIVDEAAFVNPGALLSVLPLMAVKGTKQIHISS 330 (752)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHccCCCceEEEeC
Confidence 479999999999999999999999976567677666
No 332
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=66.38 E-value=62 Score=25.96 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=35.1
Q ss_pred eEEEEecCCCC---CHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhhee-ccCCCHH
Q psy18185 31 GVLFIDEVHML---DLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIR-TTPYNQK 103 (190)
Q Consensus 31 ~Il~IDEi~~L---~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~-~~~ls~~ 103 (190)
++++|||+.-| ++.--.++-.++..+. | +|.+-++ . +-+-+...++++.-++- +.|-+.+
T Consensus 102 DvIIIDEIGpMElks~~f~~~ve~vl~~~k-p-liatlHr-------r----sr~P~v~~ik~~~~v~v~lt~~NR~ 165 (179)
T COG1618 102 DVIIIDEIGPMELKSKKFREAVEEVLKSGK-P-LIATLHR-------R----SRHPLVQRIKKLGGVYVFLTPENRN 165 (179)
T ss_pred CEEEEecccchhhccHHHHHHHHHHhcCCC-c-EEEEEec-------c----cCChHHHHhhhcCCEEEEEccchhh
Confidence 79999999998 3444455555555543 4 4444431 1 22335567888876655 4444444
No 333
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=66.20 E-value=4.9 Score=31.97 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCH-H------HHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 30 PGVLFIDEVHMLDL-E------TFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-~------~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
..+++|||+|..-+ . ....+ ..+..... ..++++|. +|..+++.+|..+
T Consensus 80 ~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~g~diiliTQ-------------~~~~id~~ir~lv 137 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHYGWDIILITQ-------------SPSQIDKFIRDLV 137 (193)
T ss_dssp T-EEEETTGGGTSB---T-T----HHH-HGGGGCCCTT-EEEEEES--------------GGGB-HHHHCCE
T ss_pred CcEEEEECChhhcCCCccccccchHHH-HHHHHhCcCCcEEEEEeC-------------CHHHHhHHHHHHH
Confidence 47999999998832 1 12233 55554333 57888883 3778888898775
No 334
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=65.88 E-value=90 Score=27.11 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=70.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
++-||+|.|.+.++....+-|..++-.... |.+++.+-. |.-..--..+|....++...-.|.-.+..+..
T Consensus 199 ~~lVIi~eD~EsF~~~VL~dlI~ils~~~~~lP~vli~Gia-------Ts~~~~~~~Lp~~~~~~L~~~~F~~~~~~~~l 271 (330)
T PF07034_consen 199 PPLVIIFEDFESFDSQVLQDLILILSSYLDRLPFVLIFGIA-------TSVEAFHSRLPRSTLSLLRIKKFQLQSSSEIL 271 (330)
T ss_pred CCEEEEEcccccCCHHHHHHHHHHHHhccCCcCEEEEEecC-------CChHHHHhhCCHHHHhhcCceEEEeCChHHHH
Confidence 356888999999999888888888765433 533222210 21100123467788888776667666655544
Q ss_pred HHH-HHHHH--hcCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q psy18185 107 AII-KLRAN--TEGHVLDDEALVTLSEIG--TRSTLRYVVQLLTPAA 148 (190)
Q Consensus 107 ~iL-~~~~~--~~~~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~~~ 148 (190)
+.+ ....- ...+.+++.++..|..+. ...++...+..|..+.
T Consensus 272 ~~v~~~~l~~~~~~~~l~~~~~~~L~~~f~~~~~Sv~~fi~~lk~~~ 318 (330)
T PF07034_consen 272 ERVLEKVLLSPDFPFKLGPRVLQFLLDRFLDHDFSVDSFISGLKYAY 318 (330)
T ss_pred HHHHHHHhcCCCCCceECHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444 33322 246678899999888873 2456676776666654
No 335
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=65.69 E-value=13 Score=35.73 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=49.2
Q ss_pred CCeEEEEecCCCCC--HHHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHH
Q psy18185 29 VPGVLFIDEVHMLD--LETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKD 104 (190)
Q Consensus 29 ~~~Il~IDEi~~L~--~~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~e 104 (190)
.+.+++|||+|.+. +.....+...+....+ ..++++|... ++. .......++.+-|...-|=+.+..+
T Consensus 629 ~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~-------~d~-~~~~~~~~il~n~~~ki~l~~~~~~ 700 (785)
T TIGR00929 629 RPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSI-------NDA-LGSRIADSILEQCATKIFLPNPEAD 700 (785)
T ss_pred CCeEEEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-------HHH-hcCchHHHHHHhCCEEEEcCCCCCC
Confidence 46899999999983 4445555555544332 5678888421 000 0112234677777533333344444
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
..++.+ .. .++++.+++|...
T Consensus 701 ~~~~~~----~~--~ls~~e~~~i~~~ 721 (785)
T TIGR00929 701 REDYAE----GF--KLTEREFELLKST 721 (785)
T ss_pred HHHHHH----Hc--CCCHHHHHHHHcC
Confidence 443332 12 3688888888774
No 336
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=65.16 E-value=7.9 Score=33.38 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=21.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhh---ccCCCEEEEEe
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALE---SAIAPIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E---~~~~~~iIlat 65 (190)
.+++|||+|.+.......+..+++ ....+.+++++
T Consensus 126 ~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SA 163 (358)
T TIGR01587 126 SLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSA 163 (358)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 689999999998754444444443 22224455544
No 337
>PRK06835 DNA replication protein DnaC; Validated
Probab=64.44 E-value=6 Score=34.65 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=21.7
Q ss_pred CeEEEEecCCCC--CHHHHHHHHHHh----hccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHML--DLETFTYLHRAL----ESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L--~~~~~~~L~~~~----E~~~~~~iIlatn 66 (190)
..+|+|||++.. +...+..|..++ +... | +|++||
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k-~-tIiTSN 287 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQK-K-MIISTN 287 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCC-C-EEEECC
Confidence 379999999766 443444444444 4433 3 677776
No 338
>PHA00729 NTP-binding motif containing protein
Probab=64.02 E-value=4.2 Score=33.83 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLR 112 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~ 112 (190)
.+.+.++|||..+.|.+++++++...|+.+
T Consensus 110 ~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 110 KIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred HHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 467889999999999999999999999875
No 339
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=63.51 E-value=13 Score=36.04 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=27.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEE
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIF 63 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIl 63 (190)
+.++|+||++.+.+++++.++.++-...+..|.+
T Consensus 353 fDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~I 386 (738)
T PHA03368 353 FNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFV 386 (738)
T ss_pred ccEEEEechhhCCHHHHHHHHHHHhccCccEEEE
Confidence 5799999999999999999999998874333333
No 340
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=63.47 E-value=7.6 Score=31.76 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..++|+||++.+++.....++.=+.++ ..+|++++
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~g~~--skii~~GD 154 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRIGEG--SKIIITGD 154 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB-TT---EEEEEE-
T ss_pred ceEEEEecccCCCHHHHHHHHcccCCC--cEEEEecC
Confidence 479999999999997766665555443 44777774
No 341
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=63.33 E-value=9 Score=36.23 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
...+|||||+-+++...+..|++.+... ..+|+.++
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~~~--~rlIlvGD 294 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALPPN--TKLILLGD 294 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcCCC--CEEEEECC
Confidence 4579999999999999999998887543 55888884
No 342
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=62.70 E-value=72 Score=24.89 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=41.8
Q ss_pred eEEEEecCCCC-CHHHHHHHHHHhh-ccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCCCH-HHHH
Q psy18185 31 GVLFIDEVHML-DLETFTYLHRALE-SAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQ-KDME 106 (190)
Q Consensus 31 ~Il~IDEi~~L-~~~~~~~L~~~~E-~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ls~-~ei~ 106 (190)
-++++||=... +.+.+..++.-.+ .+.+.+.++++ .|+++++++++|+ ..+.|.++|- .++.
T Consensus 69 ~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IG--------------Ga~G~~~~v~~~a~~~lSLS~mTfpH~la 134 (157)
T PRK00103 69 RVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIG--------------GADGLSPAVKKRADQSLSLSKLTLPHQLV 134 (157)
T ss_pred EEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEc--------------CccccCHHHHHhcCceEEeccCCCcHHHH
Confidence 37779987655 6666666555444 43323333344 2789999999999 5788998885 3554
Q ss_pred HHH
Q psy18185 107 AII 109 (190)
Q Consensus 107 ~iL 109 (190)
.++
T Consensus 135 rlv 137 (157)
T PRK00103 135 RVL 137 (157)
T ss_pred HHH
Confidence 444
No 343
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=62.46 E-value=2.9 Score=37.39 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=28.5
Q ss_pred cCCeEEEEecCCCC-CHHHHHHHHHHhhccCC-CEEEEEec
Q psy18185 28 LVPGVLFIDEVHML-DLETFTYLHRALESAIA-PIVIFATN 66 (190)
Q Consensus 28 ~~~~Il~IDEi~~L-~~~~~~~L~~~~E~~~~-~~iIlatn 66 (190)
..+|+++|||||.. .+.-|..++.-++...+ ..||+.|+
T Consensus 294 ~tpgivLiDeIdlflhP~WQQqi~qkL~saFp~IQfIvstH 334 (440)
T COG3950 294 LTPGIVLIDEIDLFLHPKWQQQINQKLLSAFPEIQFIVSTH 334 (440)
T ss_pred CCCceEEeehhhhhcCHHHHHHHHHHHHhhchhhhhhhhcC
Confidence 35799999999976 67777778877776544 45666664
No 344
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=62.33 E-value=4 Score=35.93 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=25.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA 56 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~ 56 (190)
.|.+|+|||..|..+.|.+|++.+|+.
T Consensus 283 ggmlfldeigelgadeqamllkaieek 309 (531)
T COG4650 283 GGMLFLDEIGELGADEQAMLLKAIEEK 309 (531)
T ss_pred CceEehHhhhhcCccHHHHHHHHHHhh
Confidence 489999999999999999999999984
No 345
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=60.24 E-value=59 Score=32.16 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=45.3
Q ss_pred eEEEEecCCCCCHH-HHHHHHHHhhc-cCCCEEEEEecCCcccccCCCCCCCCCCCC---hhHhhhh-----hheeccCC
Q psy18185 31 GVLFIDEVHMLDLE-TFTYLHRALES-AIAPIVIFATNRGRCLVRGTDDIISPHGIP---LDLLDRL-----LIIRTTPY 100 (190)
Q Consensus 31 ~Il~IDEi~~L~~~-~~~~L~~~~E~-~~~~~iIlatn~~~~~~~~t~~~~~~~~l~---~~l~SR~-----~~i~~~~l 100 (190)
..+++||+|++... +..++.++.-. .+.+ ||.+- |+ +|.... ..+..-| ..+.+.|=
T Consensus 33 tgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~g-fIkaf---------Sd---sP~~~~~g~~~l~~vmk~L~i~~v~l~pr 99 (814)
T TIGR00596 33 TGILVLRADRIIESSQEAFILRLYRQKNKTG-FIKAF---------SD---NPEAFTMGFSPLETKMRNLFLRHVYLWPR 99 (814)
T ss_pred cEEEEeecccccccccHHHHHHHHHHhCCCc-ceEEe---------cC---CCcccccchHHHHHHHHHhCcCeEEEeCC
Confidence 57889999999653 44445555544 3335 44444 33 255443 2344444 34566666
Q ss_pred CHHHHHHHHHHH---HHhcCCCCCHHH
Q psy18185 101 NQKDMEAIIKLR---ANTEGHVLDDEA 124 (190)
Q Consensus 101 s~~ei~~iL~~~---~~~~~~~i~~e~ 124 (190)
.+.++..-|... .....+.++++.
T Consensus 100 f~~~V~~~l~~~~~~V~ei~V~l~~~m 126 (814)
T TIGR00596 100 FHVEVASSLEKHKAEVIELHVSLTDSM 126 (814)
T ss_pred CchHHHHHhccCCCeEEEEEeCCCHHH
Confidence 777788877642 112355666653
No 346
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=60.16 E-value=26 Score=27.31 Aligned_cols=64 Identities=8% Similarity=0.015 Sum_probs=40.3
Q ss_pred eEEEEecCCCC-CHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-heeccCCCH-HHHH
Q psy18185 31 GVLFIDEVHML-DLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRTTPYNQ-KDME 106 (190)
Q Consensus 31 ~Il~IDEi~~L-~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-~i~~~~ls~-~ei~ 106 (190)
-++++||=... +...+..++.-.+.... +.|++ + .|.+++++++.||. .+.|.++|- .++.
T Consensus 67 ~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~FvI-G--------------Ga~G~~~~v~~~a~~~lSLS~mTfpH~la 131 (153)
T TIGR00246 67 HVVTLDIPGKPWTTPQLADTLEKWKTDGRDVTLLI-G--------------GPEGLSPTCKAAAEQSWSLSKLTLPHPLV 131 (153)
T ss_pred eEEEEcCCCCcCCHHHHHHHHHHHhccCCeEEEEE-c--------------CCCcCCHHHHHhcCceEEeecCCCcHHHH
Confidence 47778886554 55555555544333323 33333 3 27899999999994 788888885 3554
Q ss_pred HHH
Q psy18185 107 AII 109 (190)
Q Consensus 107 ~iL 109 (190)
.++
T Consensus 132 rlv 134 (153)
T TIGR00246 132 RVI 134 (153)
T ss_pred HHH
Confidence 444
No 347
>KOG0870|consensus
Probab=59.61 E-value=88 Score=24.88 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.+++.....-++.++.+|..+|++.| . =+++.+...+..+|....+..++.++|-.++.
T Consensus 18 rlvke~l~E~~vsisKeA~~Ai~raA-t---VFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 18 RLVKEVLPESNVSISKEARLAIARAA-T---VFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHHHHhCccccccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 33333333335889999999998885 1 25566666667888888888999999999883
No 348
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=59.09 E-value=7.5 Score=33.18 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=16.2
Q ss_pred CCeEEEEecCCCCCHHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYL 49 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L 49 (190)
...+++|||+|.|...+.+.+
T Consensus 236 ~~~~lIiDEAHnL~d~a~~~~ 256 (289)
T smart00488 236 KDSIVIFDEAHNLDNVCISAL 256 (289)
T ss_pred cccEEEEeCccChHHHHHHHh
Confidence 357999999999976655544
No 349
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=59.09 E-value=7.5 Score=33.18 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=16.2
Q ss_pred CCeEEEEecCCCCCHHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYL 49 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L 49 (190)
...+++|||+|.|...+.+.+
T Consensus 236 ~~~~lIiDEAHnL~d~a~~~~ 256 (289)
T smart00489 236 KDSIVIFDEAHNLDNVCISAL 256 (289)
T ss_pred cccEEEEeCccChHHHHHHHh
Confidence 357999999999976655544
No 350
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=58.49 E-value=4.9 Score=31.26 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=13.8
Q ss_pred cCCeEEEEecCCCCCHHH
Q psy18185 28 LVPGVLFIDEVHMLDLET 45 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~ 45 (190)
....+||+||||.|...+
T Consensus 144 ~~~~ivI~DEAHNL~~~~ 161 (174)
T PF06733_consen 144 LKDNIVIFDEAHNLEDAA 161 (174)
T ss_dssp CCCEEEEETTGGGCGGGC
T ss_pred ccCcEEEEecccchHHHH
Confidence 345799999999996543
No 351
>COG0218 Predicted GTPase [General function prediction only]
Probab=57.83 E-value=1e+02 Score=25.17 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 7 DKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 7 ~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
.+.++++.+.+..|+..+.. +..-|+++|==|-+...-+ .++..+.....|.+|++|
T Consensus 87 k~~~e~w~~~i~~YL~~R~~-L~~vvlliD~r~~~~~~D~-em~~~l~~~~i~~~vv~t 143 (200)
T COG0218 87 KEVKEKWKKLIEEYLEKRAN-LKGVVLLIDARHPPKDLDR-EMIEFLLELGIPVIVVLT 143 (200)
T ss_pred HHHHHHHHHHHHHHHhhchh-heEEEEEEECCCCCcHHHH-HHHHHHHHcCCCeEEEEE
Confidence 47788899999998876544 4445777888888766433 444455555557788888
No 352
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=57.04 E-value=24 Score=32.21 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=27.6
Q ss_pred CeEEEEecCCCCCH-HHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDL-ETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-~~~~~L~~~~E~~~~~~iIlatn 66 (190)
+.++++||+|.+.. +..++|...+-..+.|.++.+|+
T Consensus 124 ~~~~i~DE~h~~~~~~~~~~l~~g~~~r~~pl~~~IST 161 (477)
T PF03354_consen 124 PSLAIFDELHAHKDDELYDALESGMGARPNPLIIIIST 161 (477)
T ss_pred CceEEEeCCCCCCCHHHHHHHHhhhccCCCceEEEEeC
Confidence 46999999999976 47777776666655577777773
No 353
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=56.92 E-value=47 Score=33.00 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=47.9
Q ss_pred CeEEEEecCCCCCH--HHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCC---hhHhhhhhheeccCCCH
Q psy18185 30 PGVLFIDEVHMLDL--ETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIP---LDLLDRLLIIRTTPYNQ 102 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~---~~l~SR~~~i~~~~ls~ 102 (190)
+.+++|||+|.+.. ....++.+......+ ..++++|.. +..++ .++.+-|...-+=+.+.
T Consensus 734 ~~~~viDEaw~l~~~~~~a~fi~~~~k~~RK~g~~~~~aTQs-------------i~D~~~sa~~il~ns~~~i~L~q~~ 800 (893)
T TIGR03744 734 PIVMVTDEGHIITTNPLLAPYVVKITKMWRKLGAWFWLATQN-------------LADFPDSAEKMLNMIEWWLCLNMPP 800 (893)
T ss_pred eEEEEeehHhhhhcCHHHHHHHHHHHHHHHhcCcEEEEEeCC-------------HHHhhhHHHHHHHhchhhhhhcCCH
Confidence 57899999999842 234444444433222 567888841 33333 34666664333333455
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
+++.++.+. . .+++...++|...
T Consensus 801 ~~~~~~~~~----~--~Ls~~q~~~i~s~ 823 (893)
T TIGR03744 801 DEVEQIARF----R--ELTEEQKAMLLSA 823 (893)
T ss_pred HHHHHHHHh----c--CCCHHHHHHHHhc
Confidence 666544322 2 4788888888776
No 354
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=56.44 E-value=18 Score=25.25 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=22.3
Q ss_pred cCCeEEEEecC-CCCCHHHHHHHHHHhh
Q psy18185 28 LVPGVLFIDEV-HMLDLETFTYLHRALE 54 (190)
Q Consensus 28 ~~~~Il~IDEi-~~L~~~~~~~L~~~~E 54 (190)
...++++|||+ ..|+.+....+..+++
T Consensus 62 ~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 62 DSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 35689999999 9999988888777765
No 355
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=55.49 E-value=15 Score=33.37 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccC
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAI 57 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~ 57 (190)
.+++||+||+|++..+.+..+...+..+.
T Consensus 146 ~~~liI~DE~Hh~~a~~~~~~~~~~~~~~ 174 (442)
T COG1061 146 EFGLIIFDEVHHLPAPSYRRILELLSAAY 174 (442)
T ss_pred ccCEEEEEccccCCcHHHHHHHHhhhccc
Confidence 36899999999998877777777766653
No 356
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=54.34 E-value=9.4 Score=36.96 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=25.8
Q ss_pred cCCeEEEEecCCCCCHH-HHHHHHHHhh---ccCCCEEEEEe
Q psy18185 28 LVPGVLFIDEVHMLDLE-TFTYLHRALE---SAIAPIVIFAT 65 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~-~~~~L~~~~E---~~~~~~iIlat 65 (190)
+...++|+||+|.+..+ ...++..+++ +.+.+++++++
T Consensus 337 l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SA 378 (733)
T COG1203 337 LLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSA 378 (733)
T ss_pred HHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEec
Confidence 34579999999999776 5555555555 44346666665
No 357
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=54.25 E-value=3.3 Score=28.27 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=33.8
Q ss_pred HhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCc-ccHHHHHHHHHh
Q psy18185 114 NTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTA-ISKQDILEVSTL 170 (190)
Q Consensus 114 ~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~-It~~~V~~~~~~ 170 (190)
+..+..|+++++..++++- +- .+..-+.++...++.+|... ++++++.+++.+
T Consensus 14 ~~~~tkIs~dal~l~~eyl-~i---FV~EAv~Ra~~~a~~e~~~~~le~e~LEki~pq 67 (72)
T PF09415_consen 14 KDDKTKISKDALKLSAEYL-RI---FVREAVARAAEQAEAEGDEGFLEVEHLEKILPQ 67 (72)
T ss_dssp SSTT-EE-CCCHHHHHHHH-HH---HHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCHC
T ss_pred cCCCCCcCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3455678888999988883 21 23334556666666788888 999999998754
No 358
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=53.58 E-value=14 Score=35.22 Aligned_cols=36 Identities=36% Similarity=0.444 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
...+++|||+-+++...+..|++.+... ..+|+.++
T Consensus 265 ~~dvlIvDEaSMvd~~lm~~ll~al~~~--~rlIlvGD 300 (615)
T PRK10875 265 HLDVLVVDEASMVDLPMMARLIDALPPH--ARVIFLGD 300 (615)
T ss_pred CCCeEEEChHhcccHHHHHHHHHhcccC--CEEEEecc
Confidence 4479999999999999999999987543 56888884
No 359
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=53.28 E-value=31 Score=34.85 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
...||||||+-+++...+..|++..+.. +..+|+.+.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~~-garvVLVGD 469 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAADA-GAKVVLVGD 469 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhhC-CCEEEEECC
Confidence 3469999999999999999888877654 467888883
No 360
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=52.90 E-value=36 Score=26.50 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=33.2
Q ss_pred eEEEEecCCC-CCHHHHHHHH-HHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCCCHH-HHH
Q psy18185 31 GVLFIDEVHM-LDLETFTYLH-RALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQK-DME 106 (190)
Q Consensus 31 ~Il~IDEi~~-L~~~~~~~L~-~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ls~~-ei~ 106 (190)
-++.+|+--. ++.+.+...+ +....+.+-+.++++ .|.+++++++.|| ..+.|.++|-- ++.
T Consensus 69 ~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IG--------------G~~G~~~~~~~~a~~~lSLS~mTfpH~la 134 (155)
T PF02590_consen 69 YVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIG--------------GADGLSEEVRKRADEKLSLSKMTFPHQLA 134 (155)
T ss_dssp EEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE---------------BTTB--HHHHHH-SEEEES-SS---HHHH
T ss_pred EEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEe--------------cCCCCCHHHHhhcCceEEEecCCCcHHHH
Confidence 5788996554 4555555444 444554433333334 2778999999999 67899999863 554
Q ss_pred HHH
Q psy18185 107 AII 109 (190)
Q Consensus 107 ~iL 109 (190)
.++
T Consensus 135 rlv 137 (155)
T PF02590_consen 135 RLV 137 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 361
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=52.27 E-value=70 Score=25.02 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCCH---HHHHHHHHHhhccCC-CEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDL---ETFTYLHRALESAIA-PIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~---~~~~~L~~~~E~~~~-~~iIlatn 66 (190)
.+++|+|||+-..-. -....+..+++..+. ..+|++++
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr 136 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGR 136 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECC
Confidence 459999999987722 122345556665333 67888884
No 362
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=52.18 E-value=34 Score=33.34 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
...+|||||+-+++...+..|++..+.. +..+|+.+
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~~~-~~kliLVG 474 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAEEA-GAKVVLVG 474 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHHhc-CCEEEEEC
Confidence 4579999999999998888888866543 35688877
No 363
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=51.98 E-value=17 Score=34.41 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhh
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALE 54 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E 54 (190)
++++|||+|+++......+.....
T Consensus 359 ~lvVIDEaH~fg~~qr~~l~~~~~ 382 (630)
T TIGR00643 359 ALVIIDEQHRFGVEQRKKLREKGQ 382 (630)
T ss_pred ceEEEechhhccHHHHHHHHHhcc
Confidence 899999999998877666665544
No 364
>PHA00350 putative assembly protein
Probab=51.92 E-value=19 Score=32.53 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=10.5
Q ss_pred CeEEEEecCCCC
Q psy18185 30 PGVLFIDEVHML 41 (190)
Q Consensus 30 ~~Il~IDEi~~L 41 (190)
..+|+|||+|.+
T Consensus 82 gaLIViDEaq~~ 93 (399)
T PHA00350 82 GALYVIDEAQMI 93 (399)
T ss_pred CCEEEEECchhh
Confidence 369999999988
No 365
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=50.95 E-value=20 Score=29.61 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=27.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
+..|+|||++-+++.++..|..+...+.. +++++
T Consensus 257 ~~~i~IDE~QD~s~~Q~~il~~l~~~~~~--~~~vG 290 (315)
T PF00580_consen 257 YDHILIDEFQDTSPLQLRILKKLFKNPEN--LFIVG 290 (315)
T ss_dssp SSEEEESSGGG-BHHHHHHHHHHHTTTTT--EEEEE
T ss_pred CCeEEeEccccCCHHHHHHHHHHHHhhce--eEEeC
Confidence 58999999999999999988888877644 66666
No 366
>PHA01513 mnt Mnt
Probab=49.95 E-value=75 Score=22.27 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
++++.+.|+.+|+.+|..+..++...|...
T Consensus 13 P~eLk~rL~~aA~~nGRSmNaeIv~~Le~a 42 (82)
T PHA01513 13 PYELKEKLKQRAKANGRSLNAELVQIVQDA 42 (82)
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 357899999999999999999988887776
No 367
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=49.30 E-value=10 Score=31.23 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=30.5
Q ss_pred CeEEEEecCCCCCH---HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCC
Q psy18185 30 PGVLFIDEVHMLDL---ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~~---~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls 101 (190)
.+++|+||+|.+.. ....++.. +. ..-.+++++ | |...-+.++.+-+..+.-++++
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~-l~--~~~~~lLSg---------T----P~~n~~~dl~~~l~~L~~~~~~ 193 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRK-LR--ARYRWLLSG---------T----PIQNSLEDLYSLLRFLNPDPFS 193 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHC-CC--ECEEEEE-S---------S-----SSSGSHHHHHHHHHHCTTTCS
T ss_pred ceeEEEecccccccccccccccccc-cc--cceEEeecc---------c----cccccccccccchheeeccccc
Confidence 58999999999932 33334433 33 123355544 5 2344445666665555555555
No 368
>PHA02558 uvsW UvsW helicase; Provisional
Probab=49.26 E-value=18 Score=33.28 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=17.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRAL 53 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~ 53 (190)
.+++++||+|++....+..+++.+
T Consensus 223 ~~~iIvDEaH~~~~~~~~~il~~~ 246 (501)
T PHA02558 223 FGMVIVDECHLFTGKSLTSIITKL 246 (501)
T ss_pred cCEEEEEchhcccchhHHHHHHhh
Confidence 479999999999766555554443
No 369
>PF13175 AAA_15: AAA ATPase domain
Probab=48.61 E-value=31 Score=29.87 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=28.6
Q ss_pred EEEEecCC-CCCHHHHHHHHHHhhccCC---CEEEEEec
Q psy18185 32 VLFIDEVH-MLDLETFTYLHRALESAIA---PIVIFATN 66 (190)
Q Consensus 32 Il~IDEi~-~L~~~~~~~L~~~~E~~~~---~~iIlatn 66 (190)
|++|||.+ +|++.+|..|.+.+.+-.. ..+|++||
T Consensus 372 illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTH 410 (415)
T PF13175_consen 372 ILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTH 410 (415)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 99999998 4688999999988876333 67999996
No 370
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=47.10 E-value=20 Score=32.42 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=24.0
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
++...++|||++.|++...-.++.-.-++ ..+|+..|
T Consensus 350 l~~~FiIIDEaQNLTpheikTiltR~G~G--sKIVl~gd 386 (436)
T COG1875 350 LPDSFIIIDEAQNLTPHELKTILTRAGEG--SKIVLTGD 386 (436)
T ss_pred cccceEEEehhhccCHHHHHHHHHhccCC--CEEEEcCC
Confidence 45578999999999986544443322222 44777774
No 371
>smart00417 H4 Histone H4.
Probab=46.98 E-value=92 Score=21.32 Aligned_cols=59 Identities=7% Similarity=0.194 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.++...+..+++ ..|+ -++.++-+.+... .+ -++.+++..+..+++..|+..||.+||.
T Consensus 13 gI~k~~IrRLaR----r~GvkRIS~~~y~elr~v-le---~~l~~I~rdav~~a~ha~RKTV~~~DV~ 72 (74)
T smart00417 13 GITKPAIRRLAR----RGGVKRISGLIYDETRNV-LK---SFLENVVRDAVTYTEHARRKTVTAMDVV 72 (74)
T ss_pred CCCHHHHHHHHH----HcCcchhhHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhcCCCcccHHHhe
Confidence 344444444443 3444 4677776666666 22 3556677777777877888899998874
No 372
>PHA02562 46 endonuclease subunit; Provisional
Probab=46.86 E-value=37 Score=31.25 Aligned_cols=38 Identities=29% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCeEEEEecC-C-CCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEV-H-MLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi-~-~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
.++++++||. + .|+......+.+++..-.+..+|++|+
T Consensus 496 ~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish 535 (562)
T PHA02562 496 DTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISH 535 (562)
T ss_pred CcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEEC
Confidence 4689999998 4 599988888888887753456888885
No 373
>PRK11054 helD DNA helicase IV; Provisional
Probab=46.81 E-value=69 Score=30.95 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
.++.|+|||++.+++.....|..+.+..+...+++++
T Consensus 430 ~~~~IlVDE~QD~s~~q~~ll~~l~~~~~~~~l~~VG 466 (684)
T PRK11054 430 PWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVG 466 (684)
T ss_pred cccEEEEEccccCCHHHHHHHHHHhccCCCCeEEEEE
Confidence 4689999999999988777777777654444555556
No 374
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=46.75 E-value=29 Score=27.45 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=22.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
..+++|||+|.++.+. ..+.+.+.+. +..+++++
T Consensus 77 ~dvI~IDEaQFf~~~i-~~l~~~~~~~-g~~Vi~~G 110 (176)
T PF00265_consen 77 YDVIGIDEAQFFDEQI-VQLVEILANK-GIPVICAG 110 (176)
T ss_dssp CSEEEESSGGGSTTTH-HHHHHHHHHT-T-EEEEEE
T ss_pred CCEEEEechHhhHHHH-HHHHHHHHhC-CCeEEEEe
Confidence 5799999999999444 4455565554 34456665
No 375
>PRK08181 transposase; Validated
Probab=46.61 E-value=26 Score=29.74 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=22.2
Q ss_pred CeEEEEecCCCCC--HHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLD--LETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~--~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
..+|+|||++.+. ...+..|..+++.. ..+ +|++||
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s-~IiTSN 207 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRS-ILITAN 207 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCC-EEEEcC
Confidence 4799999999884 34444455555421 123 777776
No 376
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=46.30 E-value=1.2e+02 Score=24.14 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCeEEEEecCC------CCCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 29 VPGVLFIDEVH------MLDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~------~L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
.+++|+|||+- .++.+ .+..+++..+ ...+|++.+
T Consensus 97 ~~DlvVLDEi~~A~~~gli~~~---~v~~lL~~rp~~~evVlTGR 138 (173)
T TIGR00708 97 ELDLVLLDELTYALKYGYLDVE---EVVEALQERPGHQHVIITGR 138 (173)
T ss_pred CCCEEEehhhHHHHHCCCcCHH---HHHHHHHhCCCCCEEEEECC
Confidence 35999999998 44444 3445555533 367888873
No 377
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=46.21 E-value=31 Score=35.26 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..||+|||+.+++...+..|++..+.. +..+|+.+.
T Consensus 469 ~~vlVIDEAsMv~~~~m~~Ll~~~~~~-garvVLVGD 504 (1102)
T PRK13826 469 KTVFVLDEAGMVASRQMALFVEAVTRA-GAKLVLVGD 504 (1102)
T ss_pred CcEEEEECcccCCHHHHHHHHHHHHhc-CCEEEEECC
Confidence 369999999999999999999988864 356888773
No 378
>PRK09183 transposase/IS protein; Provisional
Probab=46.06 E-value=27 Score=29.24 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=23.8
Q ss_pred CeEEEEecCCCC--CHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 30 PGVLFIDEVHML--DLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L--~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
..+++|||++.. +.+.++.|..++... ..+ +|++||
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn 204 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSN 204 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecC
Confidence 479999999985 456655666666431 123 677776
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=45.71 E-value=97 Score=25.08 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCCCH---HHHHHHHHHhhc-cCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDL---ETFTYLHRALES-AIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~---~~~~~L~~~~E~-~~~~~iIlatn 66 (190)
.+.+|+|||+-..-. =....+..+++. |....+|++.+
T Consensus 115 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR 156 (191)
T PRK05986 115 SYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGR 156 (191)
T ss_pred CCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECC
Confidence 358999999976632 112234455554 33368888884
No 380
>COG4086 Predicted secreted protein [Function unknown]
Probab=45.39 E-value=1.8e+02 Score=25.19 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=40.3
Q ss_pred eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHH
Q psy18185 96 RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG-----TRSTLRYVVQLLTPAA 148 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a-----~~gdlR~ai~lL~~~~ 148 (190)
+=+..++++++++....++..|+.+++..+..+.... .+-|..+..+-|..+.
T Consensus 206 ~~~~~~~~dirkvv~dv~~~ynvnltd~qvn~i~~~~~~~~~~n~d~~kv~~~L~qa~ 263 (299)
T COG4086 206 KQKVDDPADIRKVVDDVANNYNVNLTDTQVNQIVNLFLAMSNLNIDWTKVQGQLKQAK 263 (299)
T ss_pred hCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhccCccHHHhhhHHHHHH
Confidence 3344799999999999999999999999999888773 2335566666665544
No 381
>KOG1808|consensus
Probab=44.92 E-value=36 Score=36.59 Aligned_cols=72 Identities=18% Similarity=0.369 Sum_probs=52.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCC-------------CEEEEEecCCcccccCCCCCCCCCCC------ChhHhhh
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIA-------------PIVIFATNRGRCLVRGTDDIISPHGI------PLDLLDR 91 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~-------------~~iIlatn~~~~~~~~t~~~~~~~~l------~~~l~SR 91 (190)
..+++||++....+.+.+|++++++... |-+.+.. |.+ ++... ...|++|
T Consensus 509 ~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfa---------tqn--~~~~y~grk~lsRa~~~r 577 (1856)
T KOG1808|consen 509 DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFA---------TQN--PPGTYGGRKILSRALRNR 577 (1856)
T ss_pred CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhh---------hcc--Cccccchhhhhhhccccc
Confidence 4788999999999999999999997432 1222222 222 23222 3567888
Q ss_pred hhheeccCCCHHHHHHHHHHHH
Q psy18185 92 LLIIRTTPYNQKDMEAIIKLRA 113 (190)
Q Consensus 92 ~~~i~~~~ls~~ei~~iL~~~~ 113 (190)
...++|.-+.++++..++..++
T Consensus 578 f~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 578 FIELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred chhhhhhhcCchhhhhhhcccc
Confidence 8899999999999999998776
No 382
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=44.85 E-value=36 Score=34.26 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=12.1
Q ss_pred CCeEEEEecCCCCC
Q psy18185 29 VPGVLFIDEVHMLD 42 (190)
Q Consensus 29 ~~~Il~IDEi~~L~ 42 (190)
..+++|+||+|++.
T Consensus 272 ~wdlvIvDEAH~lk 285 (956)
T PRK04914 272 EWDLLVVDEAHHLV 285 (956)
T ss_pred CCCEEEEechhhhc
Confidence 35899999999994
No 383
>PTZ00424 helicase 45; Provisional
Probab=44.83 E-value=21 Score=31.16 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=11.7
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.+..
T Consensus 171 i~lvViDEah~~~~ 184 (401)
T PTZ00424 171 LKLFILDEADEMLS 184 (401)
T ss_pred ccEEEEecHHHHHh
Confidence 37999999999854
No 384
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=44.83 E-value=97 Score=30.53 Aligned_cols=98 Identities=16% Similarity=0.353 Sum_probs=58.7
Q ss_pred eEEEEecCCCCCHH-------HHHHHHHHhh-----ccCCCEEEEEecCC--------------cccccCCCCCCCCCCC
Q psy18185 31 GVLFIDEVHMLDLE-------TFTYLHRALE-----SAIAPIVIFATNRG--------------RCLVRGTDDIISPHGI 84 (190)
Q Consensus 31 ~Il~IDEi~~L~~~-------~~~~L~~~~E-----~~~~~~iIlatn~~--------------~~~~~~t~~~~~~~~l 84 (190)
-||+|||+.-|.+- ++.+++-.+. ++..|.+|..+.-+ .+.+...+|+.+ ..|
T Consensus 206 NIIVIDEAG~L~rhiLtaVVf~yWf~Na~~~TplYr~g~vPcIVCVGSPTQTdAleS~f~H~~q~~~Vr~~~NILs-~LI 284 (828)
T PHA03311 206 NIIVIDEAGLLGRHILTAVVFCYWFYNALYDTPLYRQGAVPCIVCVGSPTQTDALESTFEHSTQRCSVRESENVLT-ALI 284 (828)
T ss_pred cEEEEeccchHHHhhHHHHHHHHHHHHHhhCChHHhCCCCcEEEEeCCCcchHhhhhhcchHhhhccccccchHHH-HHh
Confidence 49999999999763 3333333333 23337666655221 011111111100 000
Q ss_pred -ChhHhhhh-------hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 85 -PLDLLDRL-------LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 85 -~~~l~SR~-------~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
.+++++.| ..|.=++.++-|.-+.|+- -+.|+.+++|.++++=+.
T Consensus 285 ~n~~l~~Y~~i~~NWaiFINNKRCtd~eFG~lLK~--lEyGLplteeh~~yvDrF 337 (828)
T PHA03311 285 CNPTLREYVDLSNNWAIFINNKRCTDPEFGHLLKT--LEYGLPLTEEHMEYVDRF 337 (828)
T ss_pred cCHHHHHHcCcccceEEEEeccccCChhHHHHHHH--HHcCCCCCHHHHHHHHhh
Confidence 24555555 4567789999999998874 367999999999999887
No 385
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=44.22 E-value=57 Score=26.76 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCC----HHH-HHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLD----LET-FTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~----~~~-~~~L~~~~E~~~~~~iIlatn 66 (190)
+.++++||.-.=+ ..+ ...+.+.+-+...+.+|++|+
T Consensus 111 ~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH 152 (222)
T cd03287 111 RSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTH 152 (222)
T ss_pred CeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcc
Confidence 4799999975432 222 233333333333477888996
No 386
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.52 E-value=41 Score=30.54 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCC-CEEEEEe
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIA-PIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~-~~iIlat 65 (190)
.++++|||+|.+.. .....|..+.+..+. |.+.+++
T Consensus 128 i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTA 170 (470)
T TIGR00614 128 ITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTA 170 (470)
T ss_pred cCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEec
Confidence 37999999999853 333444444444333 5555544
No 387
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=42.69 E-value=41 Score=20.22 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=18.8
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHH
Q psy18185 121 DDEALVTLSEIGTRSTLRYVVQLL 144 (190)
Q Consensus 121 ~~e~l~~i~~~a~~gdlR~ai~lL 144 (190)
...+++.+.+. |+||+=.||..+
T Consensus 16 kr~~Le~iL~~-C~GDvv~AIE~~ 38 (39)
T PF03474_consen 16 KRSVLELILQR-CNGDVVQAIEQF 38 (39)
T ss_pred ChHHHHHHHHH-cCCcHHHHHHHh
Confidence 45789999999 699998888653
No 388
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=41.83 E-value=85 Score=26.28 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.4
Q ss_pred eEEEEecCCCCC
Q psy18185 31 GVLFIDEVHMLD 42 (190)
Q Consensus 31 ~Il~IDEi~~L~ 42 (190)
-++|+||+|++.
T Consensus 105 vll~iDei~r~a 116 (249)
T cd01128 105 VVILLDSITRLA 116 (249)
T ss_pred EEEEEECHHHhh
Confidence 688899999883
No 389
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=41.33 E-value=42 Score=32.20 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
.+.++|+||+|.+.++++..++..+-.... .+|+++
T Consensus 299 ~fnll~VDEA~FI~~~a~~tilgfm~q~~~-KiIfIS 334 (668)
T PHA03372 299 NFHLLLVDEAHFIKKDAFNTILGFLAQNTT-KIIFIS 334 (668)
T ss_pred CCCEEEEehhhccCHHHHHHhhhhhcccCc-eEEEEe
Confidence 457999999999999999999999987543 344433
No 390
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=40.73 E-value=1.3e+02 Score=21.49 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=19.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
+|++|.|- +.......+.+.+++...|.++..-
T Consensus 46 gII~Ite~--~~~~i~e~i~~~~~~~~~P~ii~IP 78 (100)
T PRK02228 46 GILVMHDD--DLEKLPRRLRRTLEESVEPTVVTLG 78 (100)
T ss_pred EEEEEehh--HhHhhHHHHHHHHhcCCCCEEEEEC
Confidence 77777663 3334456666666665556666654
No 391
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=40.60 E-value=47 Score=31.07 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=21.8
Q ss_pred eEEEEecCCCCCH------HHHHHHHHHhhccCC-CEEEEEe
Q psy18185 31 GVLFIDEVHMLDL------ETFTYLHRALESAIA-PIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~------~~~~~L~~~~E~~~~-~~iIlat 65 (190)
++++|||+|.++. .....|..+.+..+. |++.+++
T Consensus 129 ~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTA 170 (591)
T TIGR01389 129 ALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTA 170 (591)
T ss_pred CEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 7899999999853 334455555555333 6455544
No 392
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=40.37 E-value=1.2e+02 Score=24.10 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCCCH---HHHHHHHHHhhc-cCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDL---ETFTYLHRALES-AIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~---~~~~~L~~~~E~-~~~~~iIlatn 66 (190)
.+.+||+||+-..-. =...-+..+++. |....+|++.+
T Consensus 96 ~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR 137 (172)
T PF02572_consen 96 EYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGR 137 (172)
T ss_dssp T-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-S
T ss_pred CCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECC
Confidence 458999999954411 012234455554 44478899884
No 393
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=40.37 E-value=64 Score=19.00 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 119 VLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 119 ~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++.+.+..+... ++||+-.|++.|-
T Consensus 14 ~~~~~~I~~~L~~-~~~~ve~ai~~LL 39 (42)
T PF02845_consen 14 DLDREVIEAVLQA-NNGDVEAAIDALL 39 (42)
T ss_dssp SS-HHHHHHHHHH-TTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 6788889998888 6899988887764
No 394
>KOG4849|consensus
Probab=39.64 E-value=62 Score=28.96 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=39.6
Q ss_pred eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy18185 96 RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~ 152 (190)
...++++.|.++|+.+ +-.|+..++.....-|+-||...|+..|-.|-.+-+
T Consensus 353 ~~~plSeAEFEdiM~R-----NraiSSSAIsrAvsdASaGDy~~AiETllTAI~lIK 404 (498)
T KOG4849|consen 353 QMFPLSEAEFEDIMTR-----NRAISSSAISRAVSDASAGDYKGAIETLLTAIQLIK 404 (498)
T ss_pred CCccchHHHHHHHHhh-----cchhhHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 4457999999999974 336777777766666688999999999887765443
No 395
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=39.29 E-value=44 Score=26.50 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=25.6
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
+.++++||.- .|+......+...+.+- .+..+|++|+
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 185 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 5899999987 55776666666666532 2356888885
No 396
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=39.20 E-value=1e+02 Score=30.33 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=34.3
Q ss_pred hhHhhhh-------hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 86 LDLLDRL-------LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 86 ~~l~SR~-------~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
+++++.| ..|.=++.++-|.-+.|+.. +.|+.++++-++++=+.
T Consensus 277 ~~l~~Y~~i~~NWaiFINNKRCtd~eFG~lLK~l--EyGLplteeh~~yvDrF 327 (818)
T PF02689_consen 277 KTLREYCDISNNWAIFINNKRCTDPEFGHLLKTL--EYGLPLTEEHMRYVDRF 327 (818)
T ss_pred HHHHHHcCcccceEEEEeccccCChhHHHHHHHh--hcCCCCCHHHHHHhhhc
Confidence 4555555 45677899999999988743 67999999999998777
No 397
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=38.59 E-value=71 Score=25.36 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=24.3
Q ss_pred CeEEEEecCCCC-CHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 30 PGVLFIDEVHML-DLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L-~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
.+++++||++.- +..-...+.+++.+-. ...+|++|+
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th 197 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTH 197 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 479999999864 6666666666666543 256888884
No 398
>PRK10869 recombination and repair protein; Provisional
Probab=38.56 E-value=3.3e+02 Score=25.53 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=24.1
Q ss_pred CeEEEEecCCCC-CHHHHHHHHHHhhcc-CCCEEEEEec
Q psy18185 30 PGVLFIDEVHML-DLETFTYLHRALESA-IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L-~~~~~~~L~~~~E~~-~~~~iIlatn 66 (190)
++++++||++.- +......+.+.+..- ....+|++|+
T Consensus 453 ~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH 491 (553)
T PRK10869 453 TPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTH 491 (553)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 579999999976 454444455554432 2356788885
No 399
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=38.38 E-value=1.5e+02 Score=28.96 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=48.2
Q ss_pred CCeEEEEecCCCCCH--HHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhh-eeccCCCHH
Q psy18185 29 VPGVLFIDEVHMLDL--ETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI-IRTTPYNQK 103 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~--~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~-i~~~~ls~~ 103 (190)
.+.++++||++.+-. .....+...+... ....++++|+.. ++. .-+.+-.++...|.. |-++.....
T Consensus 642 ~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~-------~d~-~~s~~~~~i~~~~~t~I~lpn~~a~ 713 (800)
T PRK13898 642 TPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSV-------EDA-SKSAISDTLVQQTATQIFLPNLKAT 713 (800)
T ss_pred CCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-------HHH-HhChhHHHHHHhCCeEEEcCChhhH
Confidence 468999999999843 3333333333321 125678888521 000 011234678888854 666543322
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
+.. . +++.+++..+++|...
T Consensus 714 ---~~y---~--~~~gLt~~e~~~i~~~ 733 (800)
T PRK13898 714 ---DIY---R--SVFMLSEREYILIKHT 733 (800)
T ss_pred ---HHH---H--HHcCCCHHHHHHHhcC
Confidence 212 1 2456889999988875
No 400
>PHA02774 E1; Provisional
Probab=38.18 E-value=57 Score=31.16 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=44.4
Q ss_pred eEEEEecCCCCC-HHHHHHHHHHhhccC--------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhhe
Q psy18185 31 GVLFIDEVHMLD-LETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLII 95 (190)
Q Consensus 31 ~Il~IDEi~~L~-~~~~~~L~~~~E~~~--------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i 95 (190)
+++++||+-.-. .-....|..+++..+ .|-+|++|| .+ + ....--..|.||...|
T Consensus 481 ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN--------~d-~-~~~~~~~yL~sRi~~f 550 (613)
T PHA02774 481 KIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSN--------ID-V-KAEDRYKYLHSRITVF 550 (613)
T ss_pred CEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecC--------CC-c-ccchhhHHhhhhEEEE
Confidence 799999992221 223336777777652 144777776 21 1 0011124689998877
Q ss_pred ecc-------------CCCHHHHHHHHHHHHHhcCC
Q psy18185 96 RTT-------------PYNQKDMEAIIKLRANTEGH 118 (190)
Q Consensus 96 ~~~-------------~ls~~ei~~iL~~~~~~~~~ 118 (190)
.|+ .+++..-+...++--...++
T Consensus 551 ~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL 586 (613)
T PHA02774 551 EFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDL 586 (613)
T ss_pred ECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCC
Confidence 765 45666666666555544443
No 401
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=38.05 E-value=1e+02 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=11.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhh
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALE 54 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E 54 (190)
.+|++.+.|+|+....+.+...++
T Consensus 64 d~lvV~~ldRl~R~~~d~~~~~l~ 87 (134)
T cd03769 64 ERVVITYKDRLARFGFELLEELFK 87 (134)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHH
Confidence 355555555555544444443333
No 402
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=37.89 E-value=38 Score=24.67 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCCCH-----------HHHHHHHHHhhccC--CCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDL-----------ETFTYLHRALESAI--APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~~--~~~iIlatn 66 (190)
.+.+++|||++.+.. .....+..+.+... ...+|++++
T Consensus 85 ~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~ 135 (165)
T cd01120 85 GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQ 135 (165)
T ss_pred CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 358999999997632 22344555554432 355666665
No 403
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=37.82 E-value=27 Score=33.65 Aligned_cols=18 Identities=22% Similarity=0.074 Sum_probs=14.1
Q ss_pred CeEEEEecCCCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFT 47 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~ 47 (190)
+.++||||+|+|...+.+
T Consensus 247 ~~~lViDEAH~L~d~A~~ 264 (697)
T PRK11747 247 NLLYVLDEGHHLPDVARD 264 (697)
T ss_pred CCEEEEECccchHHHHHH
Confidence 578999999999754443
No 404
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=37.39 E-value=94 Score=18.97 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=16.6
Q ss_pred HHHHHHH-HHhhhcCCCcccHHHHHHH
Q psy18185 142 QLLTPAA-LTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 142 ~lL~~~~-~~a~~~g~~~It~~~V~~~ 167 (190)
..+.... .+|...|...||.+.+..+
T Consensus 18 ~~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 18 KKLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp HHHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 3343333 5677889999999998765
No 405
>PRK02362 ski2-like helicase; Provisional
Probab=36.98 E-value=50 Score=31.90 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCH----HHHH-HHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDL----ETFT-YLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~----~~~~-~L~~~~E~~~~~~iIlat 65 (190)
-++++|||+|.+.. .... .+.++...++.+.+|+.|
T Consensus 138 v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lS 178 (737)
T PRK02362 138 ITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALS 178 (737)
T ss_pred cCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEc
Confidence 38999999999953 2222 333443333344455544
No 406
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=36.92 E-value=74 Score=18.75 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 119 VLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 119 ~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++++.+..+... ++|++-.|++.|-
T Consensus 15 ~l~~~~I~~~L~~-~~g~ve~~i~~LL 40 (43)
T smart00546 15 NLDEEVIKAVLEA-NNGNVEATINNLL 40 (43)
T ss_pred CCCHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 5778888888887 6899988887663
No 407
>PRK07952 DNA replication protein DnaC; Validated
Probab=36.74 E-value=89 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=23.5
Q ss_pred CeEEEEecCCCCC--HHHHHHHHHHhhcc---CCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLD--LETFTYLHRALESA---IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~--~~~~~~L~~~~E~~---~~~~iIlatn 66 (190)
..+|+|||++... .-....|+.+++.. ..| .|++||
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~-tiitSN 203 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRP-TGMLTN 203 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCC-EEEeCC
Confidence 4799999998874 33455677777642 124 555665
No 408
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=36.72 E-value=92 Score=24.75 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=26.9
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
++++++||... |+......+...+++-. ...+|++|+
T Consensus 136 ~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH 174 (197)
T cd03278 136 SPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITH 174 (197)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 47999999974 57777777777776532 256888885
No 409
>KOG3902|consensus
Probab=36.69 E-value=1e+02 Score=26.98 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccChHHH---HHHhH
Q psy18185 120 LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSS---ARILT 182 (190)
Q Consensus 120 i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~~~~~---~~~~~ 182 (190)
-.++...++-.. .+| .++++|.++...+...|.+.||++++- +-++-|...+ +.|++
T Consensus 43 P~pett~Lved~-V~g---qvie~l~qa~eia~lrgsr~Itpedli--flir~Drakv~rL~tyl~ 102 (352)
T KOG3902|consen 43 PLPETTNLVEDN-VRG---QVIESLVQANEIADLRGSRSITPEDLI--FLIRHDRAKVNRLVTYLS 102 (352)
T ss_pred CcHHHHHHHHHH-HHH---HHHHHHHHHhhhhhhcCccccChHHHH--HHhhccHHHHHHHHHHHH
Confidence 346777777777 455 789999999999999999999998874 5566676543 44544
No 410
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=36.53 E-value=93 Score=23.91 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=26.9
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
.++++++||.- .|+......+.+.+.+-. ...+|++|+
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 155 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 35899999986 567777777777665432 356888885
No 411
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.47 E-value=50 Score=32.23 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=17.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRAL 53 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~ 53 (190)
.+++|+||+|++....+..++..+
T Consensus 376 ~gLII~DEvH~lpA~~fr~il~~l 399 (732)
T TIGR00603 376 WGLILLDEVHVVPAAMFRRVLTIV 399 (732)
T ss_pred CCEEEEEccccccHHHHHHHHHhc
Confidence 589999999999766655444444
No 412
>smart00428 H3 Histone H3.
Probab=36.37 E-value=1.1e+02 Score=22.47 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=39.2
Q ss_pred cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 116 EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 116 ~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
+++-+.++++.++-.. ++ -+++++++.+...|...++..|+..|++-+.
T Consensus 50 ~~~R~~~~Al~aLQea-sE---~ylv~lfeda~~~a~HAkRvTl~~kDi~La~ 98 (105)
T smart00428 50 VDLRFQSSAIMALQEA-AE---AYLVGLFEDTNLLAIHAKRVTIMPKDIQLAR 98 (105)
T ss_pred CCceeeHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHhCCccCcHhhHHHHH
Confidence 3678999999999888 35 4888999988888877777788888887554
No 413
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.17 E-value=70 Score=23.96 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=26.6
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhccC--CCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESAI--APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~~--~~~iIlatn 66 (190)
+.++++||.. .|+......+.+.+..-. ...++++|+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 5899999998 667777777777766422 246788785
No 414
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=36.05 E-value=1.4e+02 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.075 Sum_probs=22.7
Q ss_pred CeEEEEecCCCCCH---HHHHHHHHHhhcc-CCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDL---ETFTYLHRALESA-IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~---~~~~~L~~~~E~~-~~~~iIlatn 66 (190)
+.++++||+-..-. =-...+..+++.. ....+|++.+
T Consensus 116 ~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR 156 (178)
T PRK07414 116 YSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGP 156 (178)
T ss_pred CCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECC
Confidence 58999999976522 0112344555543 3368899884
No 415
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=35.47 E-value=62 Score=24.06 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.-+..+|+... ...-++..+.-+++.. -+. .+-++|+.+...|...++.+||.+++..++.
T Consensus 24 ~ri~R~Lk~~~--~a~RVs~~A~VyLaAv-LEY---L~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 24 GRIHRYLKKGR--YAERVGAGAPVYLAAV-LEY---LTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred HHHHHHHHcCc--cccccccchHHHHHHH-HHH---HHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 45666776422 2235778888887777 232 4667888888888888889999999988774
No 416
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=35.29 E-value=35 Score=26.56 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=11.1
Q ss_pred eEEEEecCCCCCH
Q psy18185 31 GVLFIDEVHMLDL 43 (190)
Q Consensus 31 ~Il~IDEi~~L~~ 43 (190)
..+++||+|.+..
T Consensus 145 ~~lIvDE~h~~~~ 157 (203)
T cd00268 145 KYLVLDEADRMLD 157 (203)
T ss_pred CEEEEeChHHhhc
Confidence 6899999999854
No 417
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=35.29 E-value=1.5e+02 Score=23.76 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=56.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.+.|+++| +..=..+....+..+.+..+. +++++++. . .+..+-..++--+.-|-.+..+.+++..
T Consensus 46 ~pdvvl~D-l~mP~~~G~e~~~~l~~~~p~~~vvvlt~~--------~----~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ 112 (211)
T COG2197 46 KPDVVLLD-LSMPGMDGLEALKQLRARGPDIKVVVLTAH--------D----DPAYVIRALRAGADGYLLKDASPEELVE 112 (211)
T ss_pred CCCEEEEc-CCCCCCChHHHHHHHHHHCCCCcEEEEecc--------C----CHHHHHHHHHcCCCEEEeCCCCHHHHHH
Confidence 45788888 333233566666666666655 55666553 2 1323333444445678888999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
.++..+.. +..++++....+...
T Consensus 113 ai~~v~~G-~~~~~~~~~~~~~~~ 135 (211)
T COG2197 113 AIRAVAAG-GTYLPPDIARKLAGL 135 (211)
T ss_pred HHHHHHCC-CeEeCHHHHHHHHhh
Confidence 99866543 346888888777776
No 418
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=35.23 E-value=41 Score=32.28 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=16.2
Q ss_pred CeEEEEecCCCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLH 50 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~ 50 (190)
-++++|||+|++.......+.
T Consensus 384 l~lvVIDE~Hrfg~~qr~~l~ 404 (681)
T PRK10917 384 LGLVIIDEQHRFGVEQRLALR 404 (681)
T ss_pred cceEEEechhhhhHHHHHHHH
Confidence 379999999999776655544
No 419
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=35.14 E-value=54 Score=25.53 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.++++|+||+-.++... .|..+. .+ ...+|+++. +..+||...|
T Consensus 192 ~~d~vIvDEAsq~~e~~--~l~~l~-~~-~~~~vlvGD--------------~~QLpP~v~s 235 (236)
T PF13086_consen 192 KFDVVIVDEASQITEPE--ALIPLS-RA-PKRIVLVGD--------------PKQLPPVVKS 235 (236)
T ss_dssp --SEEEETTGGGS-HHH--HHHHHT-TT-BSEEEEEE---------------TTS-----S-
T ss_pred cCCEEEEeCCCCcchHH--HHHHHH-Hh-CCEEEEECC--------------hhhcCCeeCC
Confidence 36899999999987533 222221 11 156888882 6678876655
No 420
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=34.94 E-value=3.1e+02 Score=23.94 Aligned_cols=138 Identities=15% Similarity=0.171 Sum_probs=75.7
Q ss_pred CeEEEEecCCCCC---HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-----heeccCCC
Q psy18185 30 PGVLFIDEVHMLD---LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-----IIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~---~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-----~i~~~~ls 101 (190)
+-+|+|..+|.-. ..+|..|..+-.-+ . +-++|| .|++..|-.++....+++- .-+|.||+
T Consensus 138 ~l~lvIHnIDg~~LR~~~~Q~~La~LA~~p-~-I~lIAS---------iDhinapLLWd~~~~~~fnf~~hd~tT~~pY~ 206 (326)
T PF04084_consen 138 PLYLVIHNIDGPSLRNEKAQSLLAQLASIP-N-IHLIAS---------IDHINAPLLWDSSKLSRFNFLWHDVTTFAPYT 206 (326)
T ss_pred ceEEEEECCCChhhcChHHHHHHHHHHcCC-C-eEEEEe---------ccCCCcccccChhhHhhCCEEEEeCCCCCCHH
Confidence 4577788888664 45666666664443 3 345555 5566667666666667752 33688888
Q ss_pred HHHHHH-HHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH------hhhcCCCcccHHHHHHHH--Hhc
Q psy18185 102 QKDMEA-IIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALT------AKTNGRTAISKQDILEVS--TLF 171 (190)
Q Consensus 102 ~~ei~~-iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~------a~~~g~~~It~~~V~~~~--~~f 171 (190)
.|-... .+..-..+.+- ..+.+.+..|.+- -.-+.|....+|-..... ....+...|...++...+ ..+
T Consensus 207 ~E~~~~~~l~~~~g~s~~~~~~~~~~~~VL~S-Lt~nar~lf~lL~~~QL~~~~~~~~~~~~~~gv~~~~Ly~~~~e~Fi 285 (326)
T PF04084_consen 207 EETSFEDSLHSLLGKSGSRVGGLSGAKHVLKS-LTPNARNLFKLLAEHQLEEAAGADKDGSEYQGVEFRDLYNKCREEFI 285 (326)
T ss_pred HHhccccchhhhhcccccccccHHHHHHHHHH-CCHHHHHHHHHHHHHHHhhccccccCCCCCCCccHHHHHHHHHHHHh
Confidence 874222 12111112221 2667777777777 466778877777443322 001122356677766544 333
Q ss_pred cChHHHHH
Q psy18185 172 LDAKSSAR 179 (190)
Q Consensus 172 ~~~~~~~~ 179 (190)
++...+.|
T Consensus 286 ~sse~~lr 293 (326)
T PF04084_consen 286 VSSEMALR 293 (326)
T ss_pred hCCHHHHH
Confidence 44443343
No 421
>KOG1142|consensus
Probab=34.88 E-value=55 Score=27.83 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
++.-.+.+.++.+...+ .+++||.++|+++| .+ +.=.+...++.+|+.++...|.+-||+=++
T Consensus 155 l~k~kl~dLvqqId~~~--~LD~dVedlLleiA-Dd---FV~sii~~sC~LAKHRKsdtlEvrDIqLhL 217 (258)
T KOG1142|consen 155 LSKRKLDDLVQQIDGTT--KLDDDVEDLLLEIA-DD---FVSSIIHRSCKLAKHRKSDTVEVRDIQLHL 217 (258)
T ss_pred ccccchhHHHHhhcCcc--cccHHHHHHHHHHH-HH---HHHHHHHHHHHHHHhcccCccchhheeeee
Confidence 44445555566554333 68999999999995 42 445566778888988888888888876544
No 422
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=34.50 E-value=72 Score=25.15 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.+.++++||.- .|+......+.+++.+- .+..+|++|+
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 187 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 35899999987 67887777777777642 1356888885
No 423
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=34.26 E-value=1.2e+02 Score=24.21 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCC----cccHHHHHHHH
Q psy18185 103 KDMEAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT----AISKQDILEVS 168 (190)
Q Consensus 103 ~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~----~It~~~V~~~~ 168 (190)
+++.+.|+...-. .|-.+++..+..-... |+..+|.|+..|...+.+....+++ .++.+++.+++
T Consensus 14 e~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgV-SRtpVREAL~~L~~eGLV~~~~~~g~~v~~~~~~~~~ei~ 86 (221)
T PRK11414 14 LQVENDLKHQLSIGALKPGARLITKNLAEQLGM-SITPVREALLRLVSVNALSVAPAQAFTVPEVSKRQLDEIN 86 (221)
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCC-CchhHHHHHHHHHHCCCEEecCCCceeecCCCHHHHHHHH
Confidence 4566666655543 3556776554444444 7889999999998877554333332 35666555544
No 424
>PRK13766 Hef nuclease; Provisional
Probab=34.21 E-value=1.2e+02 Score=29.17 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHh-hccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRAL-ESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~-E~~~~~~iIlat 65 (190)
.+++++||+|++... ....+.+.. +....|.+++.|
T Consensus 132 ~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 132 VSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred CcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 479999999999643 334444433 333346566655
No 425
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=33.90 E-value=1.9e+02 Score=21.96 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCH-HHHHHHHHHhhccC------CCEEEEEec
Q psy18185 6 SDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL-ETFTYLHRALESAI------APIVIFATN 66 (190)
Q Consensus 6 ~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~-~~~~~L~~~~E~~~------~~~iIlatn 66 (190)
..++- .+.+.+..++.++. .++++||-+++|.- ..+..+.+.+..=. ..++|++++
T Consensus 57 Pt~L~-~l~~~i~~fl~~~~----~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~~~~lIl~~~ 119 (136)
T PF05763_consen 57 PTNLH-KLLDTIVRFLKENG----NGVVIIDGLEYLILENGFESVLKFLASLKDYALLNNGTLILVVD 119 (136)
T ss_pred chhhH-HHHHHHHHHHHhCC----CcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeeccCCEEEEEEC
Confidence 34442 55666777776633 37999999999953 34444444444211 145677663
No 426
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.90 E-value=78 Score=33.05 Aligned_cols=92 Identities=20% Similarity=0.133 Sum_probs=59.1
Q ss_pred CCeEEEEecCCCCC----HHHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCCC
Q psy18185 29 VPGVLFIDEVHMLD----LETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYN 101 (190)
Q Consensus 29 ~~~Il~IDEi~~L~----~~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ls 101 (190)
++-||+|||...|. ++....|.++...+.. .++|++|.+ + +...++..+++-+ ..|.|.=-+
T Consensus 1140 P~IVVIIDE~AdLm~~~~kevE~lI~rLAqkGRAaGIHLILATQR----------P-svDVItg~IKAN~ptRIAfrVsS 1208 (1355)
T PRK10263 1140 PYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQR----------P-SVDVITGLIKANIPTRIAFTVSS 1208 (1355)
T ss_pred CeEEEEEcChHHHHhhhhHHHHHHHHHHHHHhhhcCeEEEEEecC----------c-ccccchHHHHhhccceEEEEcCC
Confidence 44688999997773 4566677777776644 688888852 1 1123555577766 467776667
Q ss_pred HHHHHHHHHHHHHh---------------------cCCCCCHHHHHHHHHh
Q psy18185 102 QKDMEAIIKLRANT---------------------EGHVLDDEALVTLSEI 131 (190)
Q Consensus 102 ~~ei~~iL~~~~~~---------------------~~~~i~~e~l~~i~~~ 131 (190)
..+-..||..-..+ .|.-++++.++.++.+
T Consensus 1209 ~~DSrtILd~~GAE~LlG~GDmL~~~~g~~~p~RvqgafvsD~Ei~~vv~~ 1259 (1355)
T PRK10263 1209 KIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQD 1259 (1355)
T ss_pred HHHHHHhcCCcchhhccCCccEEEecCCCCceeEEEeccCCHHHHHHHHHH
Confidence 77777777654221 1234677777777776
No 427
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.63 E-value=27 Score=33.56 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=11.7
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
..|||+||||.|..
T Consensus 221 ~~ivI~DEAHNL~d 234 (705)
T TIGR00604 221 DSIVIFDEAHNLDN 234 (705)
T ss_pred cCEEEEECccchHH
Confidence 36999999999943
No 428
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=33.60 E-value=36 Score=30.77 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=16.0
Q ss_pred eEEEEecCCCCCHH-HHHHHHHHhhc
Q psy18185 31 GVLFIDEVHMLDLE-TFTYLHRALES 55 (190)
Q Consensus 31 ~Il~IDEi~~L~~~-~~~~L~~~~E~ 55 (190)
++|+|||+|.+... ....+.+++..
T Consensus 151 ~~lViDEah~ll~~~~~~~i~~il~~ 176 (456)
T PRK10590 151 EILVLDEADRMLDMGFIHDIRRVLAK 176 (456)
T ss_pred eEEEeecHHHHhccccHHHHHHHHHh
Confidence 78999999998542 23344444443
No 429
>PHA00012 I assembly protein
Probab=33.38 E-value=75 Score=28.32 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCCCH----------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 29 VPGVLFIDEVHMLDL----------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~----------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
..+|++|||+|..-+ +....|....-. +..++++|. +|..+...+|.-
T Consensus 81 ~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~--G~DvilITQ-------------~ps~VDs~IR~l 138 (361)
T PHA00012 81 KNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKL--GWDIIFIIQ-------------DISIMDKQAREA 138 (361)
T ss_pred CCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccC--CceEEEEcC-------------CHHHHhHHHHHh
Confidence 347999999999832 122223222222 256888883 377787777644
No 430
>KOG2549|consensus
Probab=33.10 E-value=1.7e+02 Score=27.74 Aligned_cols=55 Identities=24% Similarity=0.217 Sum_probs=38.2
Q ss_pred HHHhcCCC-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 112 RANTEGHV-LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 112 ~~~~~~~~-i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
.|+..|+. +.+|++..|+.- .+.- .-++.+.++..-....+.+.|++||..++.+
T Consensus 20 vAEslGi~nl~deaa~~La~d-v~yr---ikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~ 75 (576)
T KOG2549|consen 20 VAESLGITNLNDEAALLLAED-VEYR---IKEIVQDAAKFMVHSKRTKLTVDDVDYALRS 75 (576)
T ss_pred HHHHhCccccCHHHHHHHHHH-HHHH---HHHHHHHHHHHhhcCCCCcCcHHHHHHHHhh
Confidence 34556775 999999999887 3432 2344555555444566789999999998864
No 431
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=33.07 E-value=39 Score=31.22 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=11.1
Q ss_pred eEEEEecCCCCCH
Q psy18185 31 GVLFIDEVHMLDL 43 (190)
Q Consensus 31 ~Il~IDEi~~L~~ 43 (190)
+.|+|||+|.|..
T Consensus 272 ~~lViDEad~ml~ 284 (518)
T PLN00206 272 SVLVLDEVDCMLE 284 (518)
T ss_pred eEEEeecHHHHhh
Confidence 6899999999854
No 432
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=32.90 E-value=1.1e+02 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=27.1
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhc--cCCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALES--AIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~--~~~~~iIlatn 66 (190)
.+.++++||.- .|+......+..++.. ..+..+|++|+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 181 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 35899999997 6677777777777652 12356788885
No 433
>PRK01172 ski2-like helicase; Provisional
Probab=32.63 E-value=67 Score=30.59 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=11.4
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.+++++||+|.+.
T Consensus 136 v~lvViDEaH~l~ 148 (674)
T PRK01172 136 VGLIVADEIHIIG 148 (674)
T ss_pred cCEEEEecchhcc
Confidence 3799999999995
No 434
>KOG2383|consensus
Probab=32.63 E-value=75 Score=29.11 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=27.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccC--CCEEEEEecC
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAI--APIVIFATNR 67 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~--~~~iIlatn~ 67 (190)
-+||+||.+--+-...-.|.++++.=. +++++.++|+
T Consensus 195 ~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR 233 (467)
T KOG2383|consen 195 ILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNR 233 (467)
T ss_pred eeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCC
Confidence 589999999988877788888888522 3555556654
No 435
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=32.62 E-value=68 Score=30.30 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCC-CEEEEEe
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIA-PIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~-~~iIlat 65 (190)
.++++|||+|.+.. .....|..+.+..+. |.+.+++
T Consensus 140 l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTA 182 (607)
T PRK11057 140 PALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA 182 (607)
T ss_pred CCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEec
Confidence 47899999999853 223344444444333 5555554
No 436
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=32.60 E-value=1e+02 Score=24.36 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCC----cccHHHHHHHH
Q psy18185 103 KDMEAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT----AISKQDILEVS 168 (190)
Q Consensus 103 ~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~----~It~~~V~~~~ 168 (190)
+++.+.|+...-. .|-.+++..+..-... |+..+|.|+..|..-+.+....|++ .++.+++.+++
T Consensus 14 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgV-SRtpVReAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~ei~ 86 (212)
T TIGR03338 14 TLVQDEIERAILSGELPPGAKLNESDIAARLGV-SRGPVREAFRALEEAGLVRNEKNRGVFVREISLAEADEIY 86 (212)
T ss_pred HHHHHHHHHHHHcCCCCCCCEecHHHHHHHhCC-ChHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHHHHH
Confidence 4566666666543 3556666555555555 7889999999998877654444442 35666666554
No 437
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=32.52 E-value=2.1e+02 Score=28.09 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCH--HH---HHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCC
Q psy18185 8 KLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDL--ET---FTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 8 ~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~--~~---~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
+++.-+...+.+.+... ....+.+++|||++.+-. .. ....++.+... ...++++|... ++. ..+
T Consensus 607 ~~~~~vl~yl~~ri~~~-~~gr~~ii~iDEaw~~l~~~~~~~~i~~~~kt~RK~-ng~~~~~TQs~-------~D~-~~s 676 (789)
T PRK13853 607 EVCAPAAAYLLHRIGAM-VDGRRFVMSCDEFRAYLLNPKFAAVVDKFLLTVRKN-NGMLILATQQP-------EHV-LES 676 (789)
T ss_pred hhHHHHHHHHHHHHHHh-cCCCcEEEEEechhHHhCCHHHHHHHHHHHHHHHHc-CeEEEEecCCH-------HHH-HcC
Confidence 34444444454443332 123467889999988732 22 23333333322 25677888421 000 001
Q ss_pred CCChhHhhhhh-heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy18185 83 GIPLDLLDRLL-IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSE 130 (190)
Q Consensus 83 ~l~~~l~SR~~-~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~ 130 (190)
.+-.++..-|. .|-++.. ..+..... +++.+++..++.|..
T Consensus 677 ~~~~~i~~n~~t~I~Lpn~-~a~~~~~~------~~fgLs~~e~~~i~~ 718 (789)
T PRK13853 677 PLGASLVAQCMTKIFYPSP-TADRSAYI------DGLKCTEKEFQAIRE 718 (789)
T ss_pred chHHHHHHhCCeEEEcCCc-ccchHHHH------HhcCCCHHHHHHHHh
Confidence 12356777785 4455443 33333221 235678888888863
No 438
>PRK14084 two-component response regulator; Provisional
Probab=32.50 E-value=1.5e+02 Score=23.53 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=41.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++|+|-- .-+.+....+..+.+..+.+.+|++|. . +......+...+.-|-.+|++.+++.+.+
T Consensus 47 ~dlv~lDi~-m~~~~G~~~~~~i~~~~~~~~iI~~t~--------~-----~~~~~~~~~~~~~~yl~KP~~~~~l~~~l 112 (246)
T PRK14084 47 YDIIFLDIN-LMDESGIELAAKIQKMKEPPAIIFATA--------H-----DQFAVKAFELNATDYILKPFEQKRIEQAV 112 (246)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCCCEEEEEec--------C-----hHHHHHHHhcCCcEEEECCCCHHHHHHHH
Confidence 578888742 222344555555554444455666662 1 11122334444566778899999999999
Q ss_pred HHHHH
Q psy18185 110 KLRAN 114 (190)
Q Consensus 110 ~~~~~ 114 (190)
.....
T Consensus 113 ~~~~~ 117 (246)
T PRK14084 113 NKVRA 117 (246)
T ss_pred HHHHH
Confidence 86543
No 439
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=32.44 E-value=1.6e+02 Score=31.76 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
...|+||||+-+++...+..|++..+.. ...+|+.+.
T Consensus 1062 ~~~llIVDEaSMv~~~~m~~Ll~~~~~~-garvVLVGD 1098 (1747)
T PRK13709 1062 SNTLFLLDESSMVGNTDMARAYALIAAG-GGRAVSSGD 1098 (1747)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhcC-CCEEEEecc
Confidence 3579999999999999999999998864 356788774
No 440
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=32.32 E-value=61 Score=28.35 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=12.3
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
...+++||+|.++.
T Consensus 146 ~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 146 FSTVIFDEFHLYDA 159 (357)
T ss_pred CCEEEEecccccCc
Confidence 47999999999985
No 441
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=32.25 E-value=1.9e+02 Score=23.75 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCCH-----HHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDL-----ETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..+++|||+-+=+. ....++++.+-+...+.++++|+
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH 164 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATH 164 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEec
Confidence 46899999998853 33444444444422466788886
No 442
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=32.15 E-value=97 Score=23.61 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=26.3
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.+.++++||.- .|+......+..++.+- .+.++|++|+
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 140 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 35899999987 46777666666666532 1356888885
No 443
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=32.05 E-value=69 Score=27.94 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=28.9
Q ss_pred CCeEEEEecCCC-CCHHHHHHHHHHhhccCC---CEEEEEec
Q psy18185 29 VPGVLFIDEVHM-LDLETFTYLHRALESAIA---PIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~-L~~~~~~~L~~~~E~~~~---~~iIlatn 66 (190)
+++|+|+||.-- |+-.++..+++++.+... .+++++|+
T Consensus 174 ~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH 215 (325)
T COG4586 174 PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215 (325)
T ss_pred CCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEec
Confidence 468999999853 466788888888865443 68888886
No 444
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=31.83 E-value=1.2e+02 Score=24.89 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=27.0
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhcc-CCCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESA-IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~-~~~~iIlatn 66 (190)
++++++||.- .|+......+.+.+.+- .+..+|++|+
T Consensus 189 ~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH 227 (251)
T cd03273 189 APMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSL 227 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 4899999998 66777666776666542 2367888886
No 445
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=31.38 E-value=79 Score=26.39 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.+.++++||.- .|+......+...+.+- .+..+|++|+
T Consensus 161 ~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 161 NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201 (264)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35899999987 67777666666666542 1357888885
No 446
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=31.38 E-value=1.3e+02 Score=23.02 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=28.5
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
.+.++++||.- .|+......+..++.+. ...+|++|+
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsh 146 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL-GITVISVGH 146 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh-CCEEEEEeC
Confidence 35899999987 46788888888888765 356888885
No 447
>KOG0994|consensus
Probab=31.28 E-value=1.1e+02 Score=31.77 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=44.6
Q ss_pred hhhheeccCCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RLLIIRTTPYNQKDMEAIIKLRANT-EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~~~i~~~~ls~~ei~~iL~~~~~~-~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+.+-..+ |++.++|.+.-..+.+. ..+ .-++.|+.+ ..||++.|-+++..|.....+...-+.+.+.|.+++.
T Consensus 1500 ~vL~l~l-p~tpeqi~~L~~~I~e~v~sL----~nVd~IL~~-T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~ 1573 (1758)
T KOG0994|consen 1500 EVLALEL-PLTPEQIQQLTGEIQERVASL----PNVDAILSR-TKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALE 1573 (1758)
T ss_pred HHHhccC-CCCHHHHHHHHHHHHHHHHhc----ccHHHHHHh-hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444 67777776655444322 111 236778888 5999999999998887543333333456777777664
No 448
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.06 E-value=1.3e+02 Score=22.87 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=26.8
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
.+.++++||.- .|+......+.+++.+-. ...+|++|+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh 153 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAH 153 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 35899999986 567777777777665432 256888885
No 449
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=30.96 E-value=89 Score=24.58 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=26.5
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
+.++++||.- .|+......+.+++.+- .+..+|++|+
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh 193 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTH 193 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 5899999987 56777777777776642 1356888885
No 450
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=30.89 E-value=1.1e+02 Score=24.54 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCC----cccHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT----AISKQDILEVST 169 (190)
Q Consensus 102 ~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~----~It~~~V~~~~~ 169 (190)
.+++.+.|+...-. .|-.+++..+..-... |+.-+|.|+..|...+.+....+++ .++.+++.+++.
T Consensus 9 ~~~vy~~i~~~I~~g~l~pG~~L~e~eLae~lgV-SRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~ei~~ 83 (224)
T PRK11534 9 ALDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYAL-GVGPLREALSQLVAERLVTVVNQKGYRVASMSEQELLDIFD 83 (224)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHCC-ChHHHHHHHHHHHHCCCEEEeCCCceEeCCCCHHHHHHHHH
Confidence 34566666655443 3556666544333344 6778899999998777554333332 456666666553
No 451
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.79 E-value=84 Score=24.75 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccC--CCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAI--APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~--~~~iIlatn 66 (190)
.++++++||.- .|+......+.+.+.+-. ...+|++|+
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH 186 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 35899999987 567777777777776531 356888885
No 452
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=30.75 E-value=91 Score=28.39 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCccccCCeEEEEecCCCCCH
Q psy18185 12 EINKVVNKYIDQGIAELVPGVLFIDEVHMLDL 43 (190)
Q Consensus 12 ~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~ 43 (190)
.+.+....+...|+ .-||+|||+|++++
T Consensus 242 ~v~e~Ae~~~~~Gk----dVVLlIDEitR~ar 269 (415)
T TIGR00767 242 MVIEKAKRLVEHKK----DVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHHHHcCC----CeEEEEEChhHHHH
Confidence 34444455444443 25888999999966
No 453
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=30.51 E-value=2.4e+02 Score=23.56 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=31.4
Q ss_pred eeccCCCHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Q psy18185 95 IRTTPYNQKDMEAIIKLRANTE--------GHVLDDEALVTLSEI---GTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 95 i~~~~ls~~ei~~iL~~~~~~~--------~~~i~~e~l~~i~~~---a~~gdlR~ai~lL~~~~ 148 (190)
|.|++|+.+|+.+||....... ...+-..-+..+... .+..|+.....++....
T Consensus 1 I~Fp~Ys~~e~~~IL~~~~~~~~~~~~~~~~~~ly~~f~~~i~~~~~~~~~rdl~eL~~i~~~lw 65 (271)
T PF14630_consen 1 IYFPPYSKDELLEILSLDQPSELPDLPDDIDRELYNQFVNLILDSFYSYTGRDLNELRHIAAKLW 65 (271)
T ss_pred CcCCCCCHHHHHHHHhhCCCcccccccchHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 5799999999999998764221 001112223333332 13467777666666555
No 454
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=30.51 E-value=2.2e+02 Score=21.25 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++++++.-+..+. | ++.+.+...+.- ++||+..|+-.|.
T Consensus 74 ~i~~edI~lv~~q~----g--vs~~~A~~AL~~-~~gDl~~AI~~L~ 113 (115)
T PRK06369 74 EIPEEDIELVAEQT----G--VSEEEARKALEE-ANGDLAEAILKLS 113 (115)
T ss_pred CCCHHHHHHHHHHH----C--cCHHHHHHHHHH-cCCcHHHHHHHHh
Confidence 57888887655432 4 344444444444 3999999987664
No 455
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=30.47 E-value=99 Score=25.16 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=21.2
Q ss_pred CeEEEEecC----CCCCHH-HHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEV----HMLDLE-TFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi----~~L~~~-~~~~L~~~~E~~~~~~iIlatn 66 (190)
+.++++||. ..++.. ....+.+.+.+..++.++++|+
T Consensus 110 ~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH 151 (222)
T cd03285 110 NSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATH 151 (222)
T ss_pred CeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 589999999 334442 2233334443222466888885
No 456
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=30.40 E-value=1e+02 Score=25.68 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=30.0
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
+..-++-+++|+.+++...+++.|+.++++.++.|...
T Consensus 166 va~~~~~t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l 203 (225)
T PF06207_consen 166 VAKQKPKTDEEIRNIVNNVLNNYNINLSDEQIQQIVNL 203 (225)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44455558889999999888888888888888777666
No 457
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=30.35 E-value=4e+02 Score=24.85 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=23.7
Q ss_pred CeEEEEecCCCC-CHHHHHHHHHHhhcc-CCCEEEEEec
Q psy18185 30 PGVLFIDEVHML-DLETFTYLHRALESA-IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L-~~~~~~~L~~~~E~~-~~~~iIlatn 66 (190)
++++++||++.- +......+.+.+..- ....+|++|+
T Consensus 463 ~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH 501 (563)
T TIGR00634 463 VTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTH 501 (563)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 489999999864 555444444444432 2356888886
No 458
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=30.33 E-value=1.7e+02 Score=22.23 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=38.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|-- .-..+....+..+.+..+. |+++++.. . ........+..-+.-|-.+|.+.+++...
T Consensus 45 ~d~illd~~-~~~~~g~~~~~~l~~~~~~~pii~ls~~--------~----~~~~~~~~~~~ga~~~l~kp~~~~~l~~~ 111 (222)
T PRK10643 45 YSLVVLDLG-LPDEDGLHLLRRWRQKKYTLPVLILTAR--------D----TLEDRVAGLDVGADDYLVKPFALEELHAR 111 (222)
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHhcCCCCcEEEEECC--------C----CHHHHHHHHhcCCCeEEeCCCCHHHHHHH
Confidence 478888732 2222344555555544333 55555542 1 11111223333345577889999999888
Q ss_pred HHHHHH
Q psy18185 109 IKLRAN 114 (190)
Q Consensus 109 L~~~~~ 114 (190)
+.....
T Consensus 112 i~~~~~ 117 (222)
T PRK10643 112 IRALIR 117 (222)
T ss_pred HHHHHh
Confidence 876553
No 459
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=30.19 E-value=64 Score=30.21 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=24.1
Q ss_pred eEEEEecCCCCCHH-HHHHHHH-HhhccCCCEEEEEec
Q psy18185 31 GVLFIDEVHMLDLE-TFTYLHR-ALESAIAPIVIFATN 66 (190)
Q Consensus 31 ~Il~IDEi~~L~~~-~~~~L~~-~~E~~~~~~iIlatn 66 (190)
.++++||+|+...+ +.-.+.+ .++....|.+++.|-
T Consensus 133 ~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTA 170 (542)
T COG1111 133 SLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTA 170 (542)
T ss_pred eEEEechhhhccCcchHHHHHHHHHHhccCceEEEEec
Confidence 57789999999764 3334444 555555588887763
No 460
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=30.00 E-value=1.2e+02 Score=23.97 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=27.4
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccCC-CEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAIA-PIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~~-~~iIlatn 66 (190)
.+.++++||.- .|+......+.+.+.+-.. ..+|++|+
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH 197 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITH 197 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 35899999984 4577777777777765322 56888885
No 461
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=29.92 E-value=1.2e+02 Score=23.13 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=22.0
Q ss_pred CeEEEEecCCCC-CHH----HHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHML-DLE----TFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L-~~~----~~~~L~~~~E~~~~~~iIlatn 66 (190)
+.++++||...= +.. ....+.+...+ ++.+|++|+
T Consensus 100 ~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~~~vii~TH 139 (162)
T cd03227 100 RPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVITH 139 (162)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEcC
Confidence 589999998765 443 33344444444 356788885
No 462
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=29.87 E-value=1.5e+02 Score=22.04 Aligned_cols=36 Identities=36% Similarity=0.563 Sum_probs=27.5
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
+.++++||.- .|+......+...+.+- ...++++|+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th 125 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSH 125 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEEC
Confidence 5899999986 67887777787777764 356777785
No 463
>PTZ00293 thymidine kinase; Provisional
Probab=29.04 E-value=1.3e+02 Score=24.78 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..+|+|||+|.++ +.......+... +..+|.++-
T Consensus 78 ~dvI~IDEaQFf~-~i~~~~~~l~~~--g~~VivaGL 111 (211)
T PTZ00293 78 YDVIAIDEGQFFP-DLVEFSEAAANL--GKIVIVAAL 111 (211)
T ss_pred CCEEEEEchHhhH-hHHHHHHHHHHC--CCeEEEEec
Confidence 4799999999995 444444433333 233666664
No 464
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=29.04 E-value=49 Score=22.20 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=12.8
Q ss_pred CCCCCHHHHHHHHHhc
Q psy18185 117 GHVLDDEALVTLSEIG 132 (190)
Q Consensus 117 ~~~i~~e~l~~i~~~a 132 (190)
.+.+++++.++|++.|
T Consensus 27 ~l~~~~~~~~~l~~~~ 42 (81)
T PF10431_consen 27 ELEFDDAVVDYLAEKG 42 (81)
T ss_dssp EEEE-HHHHHHHHHHH
T ss_pred eEEecHHHHHHHHHhC
Confidence 4578999999999985
No 465
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=28.90 E-value=1.4e+02 Score=24.33 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=22.7
Q ss_pred CeEEEEecCCCCC-H----HHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLD-L----ETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~-~----~~~~~L~~~~E~~~~~~iIlatn 66 (190)
+.+++|||.-.=+ + ....++.+.+.+..++.+|++|+
T Consensus 110 ~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH 151 (218)
T cd03286 110 DSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTH 151 (218)
T ss_pred CeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 4799999986632 1 33444344444432467888886
No 466
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=28.88 E-value=1.2e+02 Score=23.26 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=26.6
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccC--CCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAI--APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~--~~~iIlatn 66 (190)
.+.++++||.- .|+......+.+.+..-. +..+|++|+
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 35899999986 567776666666665421 356888885
No 467
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=28.78 E-value=1e+02 Score=24.52 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=25.9
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.+.++++||.- .|+......+..++.+- .+..+|++|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 35899999984 45777666666666532 1256888885
No 468
>KOG0952|consensus
Probab=28.60 E-value=62 Score=33.03 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=23.3
Q ss_pred eEEEEecCCCCCH-------HHHHHHHHHhhccCC-CEEEEEe
Q psy18185 31 GVLFIDEVHMLDL-------ETFTYLHRALESAIA-PIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~-------~~~~~L~~~~E~~~~-~~iIlat 65 (190)
++++|||||.|.. ....-.++..|.+-+ ..|++.+
T Consensus 240 ~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLS 282 (1230)
T KOG0952|consen 240 RLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLS 282 (1230)
T ss_pred eeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEee
Confidence 7999999999953 234445566665444 5666655
No 469
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.53 E-value=2.1e+02 Score=24.26 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCC-CHHHHHHHHHHhhccC--CCEEEEEec
Q psy18185 29 VPGVLFIDEVHML-DLETFTYLHRALESAI--APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L-~~~~~~~L~~~~E~~~--~~~iIlatn 66 (190)
.|++.++||.|.= +-++...+.+.++.-. ..-++++|+
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITH 202 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITH 202 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3689999999985 5555555544444322 234777786
No 470
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=28.43 E-value=71 Score=30.55 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=27.4
Q ss_pred CCeEEEEecCCCCCH-HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 29 VPGVLFIDEVHMLDL-ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
.+.++||||+-.... +++-.|.+ . ..+|+++. +..+||.+.|.
T Consensus 361 ~Fd~vIIDEAsQ~~ep~~lipl~~----~--~~~vLvGD--------------~~QLpP~v~s~ 404 (637)
T TIGR00376 361 EFDVAVIDEASQAMEPSCLIPLLK----A--RKLILAGD--------------HKQLPPTILSH 404 (637)
T ss_pred CCCEEEEECccccchHHHHHHHhh----C--CeEEEecC--------------hhhcCCccccc
Confidence 568999999955544 44333332 2 35888882 56677776653
No 471
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=28.36 E-value=77 Score=30.84 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=10.9
Q ss_pred eEEEEecCCCCC
Q psy18185 31 GVLFIDEVHMLD 42 (190)
Q Consensus 31 ~Il~IDEi~~L~ 42 (190)
+.++|||+|.+.
T Consensus 159 ~~vViDEah~~~ 170 (742)
T TIGR03817 159 RYVVIDECHSYR 170 (742)
T ss_pred CEEEEeChhhcc
Confidence 799999999984
No 472
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=28.29 E-value=44 Score=32.07 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=14.9
Q ss_pred CCeEEEEecCCCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTY 48 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~ 48 (190)
.+.++||||+|.|...+.+.
T Consensus 206 ~~~~lIiDEAH~L~d~A~~~ 225 (636)
T TIGR03117 206 QPDILIVDEAHLFEQNISRV 225 (636)
T ss_pred CCCEEEEeCCcchHHHHHHH
Confidence 35899999999996544443
No 473
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=28.02 E-value=2.3e+02 Score=22.77 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCC----CcccHHHHHHHHHh
Q psy18185 102 QKDMEAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGR----TAISKQDILEVSTL 170 (190)
Q Consensus 102 ~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~----~~It~~~V~~~~~~ 170 (190)
.+++.+.|+...-. .|-.++++.+...... |+.-+|.|+..|.....+....++ ..+|.+.+.+++..
T Consensus 18 ~~~vy~~Lr~~Il~g~l~pG~~l~e~~La~~~gv-SrtPVReAL~rL~~eGlv~~~p~rG~~V~~~~~~~~~ei~~~ 93 (230)
T COG1802 18 ADQVYEELREAILSGELAPGERLSEEELAEELGV-SRTPVREALRRLEAEGLVEIEPNRGAFVAPLSLAEAREIFEV 93 (230)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCccHHHHHHHhCC-CCccHHHHHHHHHHCCCeEecCCCCCeeCCCCHHHHHHHHHH
Confidence 34555666655432 4668889888888888 799999999999887765444333 35788888876643
No 474
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=28.00 E-value=1.3e+02 Score=23.43 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=25.1
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
+.++++||... |+......+.+.+.+- .+..+|++|+
T Consensus 117 p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 117 SPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 58999999985 5666666665665532 1256888885
No 475
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=27.99 E-value=1e+02 Score=24.66 Aligned_cols=38 Identities=18% Similarity=0.030 Sum_probs=24.4
Q ss_pred CCeEEEEec-CCCCCHHHHHHHHHHhh-ccCCCEEEEEec
Q psy18185 29 VPGVLFIDE-VHMLDLETFTYLHRALE-SAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDE-i~~L~~~~~~~L~~~~E-~~~~~~iIlatn 66 (190)
.+.++++|| .-.++......+...+. ......+|++|+
T Consensus 122 ~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH 161 (213)
T PRK15177 122 PCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTH 161 (213)
T ss_pred CCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEEC
Confidence 358999999 47888766666665443 211223777785
No 476
>KOG0385|consensus
Probab=27.86 E-value=52 Score=32.54 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=22.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCCC-EEEEEe
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIAP-IVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~~-~iIlat 65 (190)
..++|||+|++- ..-+.|.+.+..-..+ .+++++
T Consensus 291 ~ylvIDEaHRiK-N~~s~L~~~lr~f~~~nrLLlTG 325 (971)
T KOG0385|consen 291 RYLVIDEAHRIK-NEKSKLSKILREFKTDNRLLLTG 325 (971)
T ss_pred eEEEechhhhhc-chhhHHHHHHHHhcccceeEeeC
Confidence 799999999993 3345666777765443 344444
No 477
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=27.80 E-value=1.3e+02 Score=24.05 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=25.2
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhccC--CCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESAI--APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~~--~~~iIlatn 66 (190)
+.++++||.- .|+......+.+++++-. ..++|++|+
T Consensus 152 ~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH 191 (213)
T cd03279 152 LEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISH 191 (213)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 5799999997 456666666666665432 356888885
No 478
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=27.71 E-value=1.1e+02 Score=23.99 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=27.1
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.++++++||.- .|+......+.+.+.+- .+.++|++|+
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH 194 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 35899999986 56777777777776642 1366888885
No 479
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=27.61 E-value=2.4e+02 Score=21.06 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++++++.-+..+. | ++.+.+...+.- ++||+..|+-.|.
T Consensus 76 ~i~~eDI~lV~eq~----g--vs~e~A~~AL~~-~~gDl~~AI~~L~ 115 (116)
T TIGR00264 76 EITEDDIELVMKQC----N--VSKEEARRALEE-CGGDLAEAIMKLE 115 (116)
T ss_pred CCCHHHHHHHHHHh----C--cCHHHHHHHHHH-cCCCHHHHHHHhh
Confidence 48888887655433 4 344434444444 4999999886653
No 480
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=27.58 E-value=40 Score=33.18 Aligned_cols=20 Identities=30% Similarity=0.094 Sum_probs=14.8
Q ss_pred CCeEEEEecCCCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTY 48 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~ 48 (190)
.+.+++|||+|+|...+.+.
T Consensus 440 ~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 440 SFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred CCCEEEEECcchHHHHHHHH
Confidence 34799999999996544443
No 481
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=27.57 E-value=1.4e+02 Score=24.10 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=26.4
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhcc---CCCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESA---IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~---~~~~iIlatn 66 (190)
++++++||.- .|+......+.+.+.+- .+..+|++|+
T Consensus 164 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH 204 (243)
T TIGR02315 164 PDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLH 204 (243)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 5899999987 55777777777776642 1356888885
No 482
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.47 E-value=1.5e+02 Score=23.76 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=26.3
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
.+.++++||.- .|+......+.+.+.+-. ...+|++|+
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 195 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAH 195 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 35899999985 457776777777766532 356888885
No 483
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=27.46 E-value=1.5e+02 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhcc---CCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESA---IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~---~~~~iIlatn 66 (190)
.+.|+++||.- .|+......+.+.+..- .+..+|++|+
T Consensus 159 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 200 (221)
T TIGR02211 159 QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200 (221)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35899999986 66777777777776532 1356888885
No 484
>COG0433 HerA helicase [Replication, recombination, and repair]
Probab=27.34 E-value=1.3e+02 Score=26.91 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=50.1
Q ss_pred EEEEecCCCCCHH-----HHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-heeccCCCHH
Q psy18185 32 VLFIDEVHMLDLE-----TFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRTTPYNQK 103 (190)
Q Consensus 32 Il~IDEi~~L~~~-----~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-~i~~~~ls~~ 103 (190)
++++||+|.+.+. ....+.++..++.+ ..++++|. .|+.+.....+.|. .+-+...++.
T Consensus 394 ~~iieea~~~~p~~~~~~~~~~~~~iar~gRk~~v~l~~~tQ-------------rps~l~~~v~~~~~tkii~r~~~~~ 460 (520)
T COG0433 394 LIVIEEAHNFAPSSRKAPVKDIIERIAREGRKFGVGLVLATQ-------------RPSDLDDLVLSQANTKIILRLVEPT 460 (520)
T ss_pred EEEEhhhhhhCCCccchhHHHHHHHHHHhhcccceeEEEEEe-------------ChhhcCHHHHHhhcceEEEecCChH
Confidence 7889999999664 45666666666554 56777774 37888888888773 4455555554
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
+...+.... + .++++..+.+...
T Consensus 461 d~~~~~~~~---~--~~~~~l~~~l~~l 483 (520)
T COG0433 461 DQKYISRAS---E--GLSEDLLERLPSL 483 (520)
T ss_pred HHHHhhhhh---h--hcCHHHHhhCCCC
Confidence 444443321 1 2345554555544
No 485
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=27.29 E-value=69 Score=22.66 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 120 LDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 120 i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
-.+|.+..+-+.. ..+.+.++..|...|...|+++|+++++.-++
T Consensus 20 P~~eTv~lvE~iv----~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~l 64 (93)
T PF02269_consen 20 PLPETVDLVEDIV----REYIIELCQEAMEVAQRRGSKKIKVEDLLFLL 64 (93)
T ss_dssp --HHHHHHHHHHH----HHHHHHHHHHHHC-------------------
T ss_pred CcHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccCcCcHHHHHHHH
Confidence 3456666666662 35788888888888888888899999887444
No 486
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=27.07 E-value=1.1e+02 Score=29.38 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=30.7
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhcc-CCCEEEEEecC
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESA-IAPIVIFATNR 67 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~-~~~~iIlatn~ 67 (190)
|+++||||+= .|+++.+..++.++++. +..++|-.+++
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 6899999984 56889999999999984 34678888863
No 487
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=27.03 E-value=1.9e+02 Score=26.16 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=38.8
Q ss_pred hheeccCCCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRANT---EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~~~---~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
.-+..+.+...-+++++...++. .+..|+.+++++|.+. +. .+.=++.+-+..+|...|++.|...+
T Consensus 345 hgi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqa-sd---wfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 345 HGIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQA-SD---WFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp -------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHH-HH---HHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred CCCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 46788889999899988888763 3457999999999988 33 45556666666667667888887654
No 488
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=27.01 E-value=53 Score=32.53 Aligned_cols=72 Identities=24% Similarity=0.160 Sum_probs=46.6
Q ss_pred ccCCeEEEEecCCCCC----HHHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccC
Q psy18185 27 ELVPGVLFIDEVHMLD----LETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTP 99 (190)
Q Consensus 27 ~~~~~Il~IDEi~~L~----~~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ 99 (190)
.+++-+++|||...|. ++..+.+.++...+.. .++|++|.+ |...+.+.++..+ ..+.|.-
T Consensus 637 ~lP~iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlilatqR------------ps~dVit~ikanipsrIaf~v 704 (858)
T COG1674 637 ELPYIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQR------------PSVDVITGIKANIPTRIALRL 704 (858)
T ss_pred CCCeEEEEEcchHHHhhhhhHHHHHHHHHHHHhhhhcceEEEEecCC------------CCcchhHHHHhCCcceEEEEE
Confidence 3567789999999884 3567778888776554 788998853 2333554466665 3455555
Q ss_pred CCHHHHHHHHH
Q psy18185 100 YNQKDMEAIIK 110 (190)
Q Consensus 100 ls~~ei~~iL~ 110 (190)
-+..|-.-++.
T Consensus 705 ~s~~dsr~il~ 715 (858)
T COG1674 705 SSKIDSRLILG 715 (858)
T ss_pred cCccceeeecc
Confidence 55555555554
No 489
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=26.70 E-value=71 Score=19.94 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
+++.+.|+..|+..|-.+..+.+..|.+.
T Consensus 13 ~~l~~~lk~~A~~~gRS~NsEIv~~L~~~ 41 (50)
T PF03869_consen 13 EELKEKLKERAEENGRSMNSEIVQRLEEA 41 (50)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 47888999999888888888877666543
No 490
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.55 E-value=1.6e+02 Score=23.45 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=26.3
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
.++++++||.- .|+......+...+..-. ...+|++|+
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 196 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 35899999987 567766666666665432 356888885
No 491
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.55 E-value=1.4e+02 Score=24.27 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
.++++++||.- .|+......+.+++..-. ...+|++|+
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh 204 (251)
T PRK14249 165 EPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTH 204 (251)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35899999987 567777776766665432 256788785
No 492
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=26.52 E-value=1e+02 Score=29.87 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=22.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCCC-EEEEEe
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIAP-IVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~~-~iIlat 65 (190)
++++|||=|+++-.+-..|..--+. .| .+++++
T Consensus 386 gLVIiDEQHRFGV~QR~~L~~KG~~--~Ph~LvMTA 419 (677)
T COG1200 386 GLVIIDEQHRFGVHQRLALREKGEQ--NPHVLVMTA 419 (677)
T ss_pred eEEEEeccccccHHHHHHHHHhCCC--CCcEEEEeC
Confidence 7999999999998777666544332 24 355555
No 493
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.32 E-value=1.3e+02 Score=24.51 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=26.6
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
++++++||.- .|+......+.+.+++-. ...+|++|+
T Consensus 166 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH 204 (251)
T PRK14251 166 PKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTH 204 (251)
T ss_pred CCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 5899999985 557777777777776532 256888885
No 494
>PF15610 PRTase_3: PRTase ComF-like
Probab=26.23 E-value=2.3e+02 Score=24.33 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=50.5
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
-+||+||| .++..-...+++.+..... ..++-+.. +-..+.|.+-+|.-.+..+...+ +..
T Consensus 140 ~lIflDDI-kITGshE~~V~~~~~~~~~~~~~~yly~ae-------------ln~~i~p~IEn~lN~~~v~s~~D--l~~ 203 (274)
T PF15610_consen 140 HLIFLDDI-KITGSHEDKVRKILKEYGLENDFIYLYYAE-------------LNKDIDPNIENRLNYVAVPSIKD--LAE 203 (274)
T ss_pred EEEEeccE-EecCcHHHHHHHHHHHcCccccEEEEEEec-------------ccccCCcchhhhhhhhccCcHHH--HHH
Confidence 58899999 5666667777777765433 23333331 01345677888876666654433 444
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
.+...+..+..-.+.+|...
T Consensus 204 ----ii~~~~F~~n~R~vKyiL~~ 223 (274)
T PF15610_consen 204 ----IINSPNFQMNTRIVKYILGA 223 (274)
T ss_pred ----HhcCCCcchhHHHHHHHHcC
Confidence 44456777777788888766
No 495
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=26.23 E-value=1.3e+02 Score=24.57 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=26.4
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhcc---CCCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESA---IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~---~~~~iIlatn 66 (190)
++++++||.- .|+......+.+++.+- .+..+|++|+
T Consensus 165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 205 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH 205 (252)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 5899999987 56777777776666542 1356888885
No 496
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=25.97 E-value=1.1e+02 Score=23.95 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=25.7
Q ss_pred CeEEEEecCC-CCCHHHHHHHHHHhhccC--CCEEEEEec
Q psy18185 30 PGVLFIDEVH-MLDLETFTYLHRALESAI--APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~-~L~~~~~~~L~~~~E~~~--~~~iIlatn 66 (190)
++++++||.- .|+......+.+.+.+-. +..+|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH 192 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTH 192 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 5899999985 457777767766665421 356888885
No 497
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=25.91 E-value=47 Score=33.18 Aligned_cols=19 Identities=21% Similarity=0.238 Sum_probs=14.7
Q ss_pred CCeEEEEecCCCCCHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFT 47 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~ 47 (190)
.+.+++|||+|+|...+.+
T Consensus 455 ~~~~lViDEAH~l~d~A~~ 473 (928)
T PRK08074 455 SYEHIIIDEAHHFEEAASR 473 (928)
T ss_pred CCCeEEEECCchHHHHHHH
Confidence 4589999999999755433
No 498
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=25.80 E-value=1.2e+02 Score=23.87 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=26.1
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.++++++||.- .|+......+.+.+.+- .+.++|++|+
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH 190 (213)
T cd03235 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35899999984 45777666666666542 2356888885
No 499
>COG3910 Predicted ATPase [General function prediction only]
Probab=25.77 E-value=1.3e+02 Score=24.99 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=23.6
Q ss_pred CeEEEEecCCCC-CHHHHHHHHHHhh----ccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHML-DLETFTYLHRALE----SAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L-~~~~~~~L~~~~E----~~~~~~iIlatn 66 (190)
.|++++||-..- ++.-|-.|+..+- .+ ..+|++|+
T Consensus 147 ~GiYiLDEPEa~LSp~RQlella~l~~la~sG--aQ~IiATH 186 (233)
T COG3910 147 QGIYILDEPEAALSPSRQLELLAILRDLADSG--AQIIIATH 186 (233)
T ss_pred CceEEecCccccCCHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 489999999875 5544444444433 33 66999996
No 500
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=25.61 E-value=1.7e+02 Score=23.03 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=26.8
Q ss_pred CCeEEEEecCCC-CCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 29 VPGVLFIDEVHM-LDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~-L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.+.++++||.-. |+......+.+.+.+- .+..+|++|+
T Consensus 155 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH 195 (214)
T TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATH 195 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 358999999854 5777777777777652 2356888885
Done!