Query psy18185
Match_columns 190
No_of_seqs 109 out of 1149
Neff 7.1
Searched_HMMs 29240
Date Sat Aug 17 01:01:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c9o_A RUVB-like 1; hexameric 100.0 6.9E-29 2.4E-33 221.4 16.0 183 7-189 273-455 (456)
2 3uk6_A RUVB-like 2; hexameric 99.9 1.1E-23 3.6E-28 180.7 19.2 183 6-190 166-349 (368)
3 1sxj_C Activator 1 40 kDa subu 99.8 5.1E-18 1.8E-22 145.0 12.4 127 29-169 110-237 (340)
4 1jr3_D DNA polymerase III, del 99.7 5.8E-17 2E-21 138.4 13.8 131 29-170 76-208 (343)
5 1sxj_D Activator 1 41 kDa subu 99.7 9.6E-17 3.3E-21 136.0 14.3 128 29-170 133-262 (353)
6 1a5t_A Delta prime, HOLB; zinc 99.7 4.9E-17 1.7E-21 139.2 12.5 121 4-148 88-209 (334)
7 3u61_B DNA polymerase accessor 99.7 5.1E-17 1.7E-21 137.3 11.9 136 14-169 90-235 (324)
8 3pvs_A Replication-associated 99.7 1E-16 3.4E-21 143.1 14.0 128 30-170 107-243 (447)
9 1sxj_E Activator 1 40 kDa subu 99.7 1.8E-16 6.3E-21 134.9 13.6 109 29-151 134-244 (354)
10 1sxj_B Activator 1 37 kDa subu 99.7 4.9E-16 1.7E-20 129.8 15.0 121 30-169 108-229 (323)
11 1iqp_A RFCS; clamp loader, ext 99.7 4.5E-16 1.5E-20 130.2 14.4 122 29-169 110-232 (327)
12 2chq_A Replication factor C sm 99.7 2.7E-16 9.4E-21 131.1 12.0 122 29-169 102-224 (319)
13 1jr3_A DNA polymerase III subu 99.7 9.3E-16 3.2E-20 130.9 15.3 124 29-170 119-243 (373)
14 2chg_A Replication factor C sm 99.7 5.2E-15 1.8E-19 115.9 16.2 122 29-169 102-224 (226)
15 1njg_A DNA polymerase III subu 99.6 1.9E-15 6.5E-20 119.4 12.8 122 30-169 127-249 (250)
16 3pfi_A Holliday junction ATP-d 99.6 2.9E-14 9.9E-19 120.9 15.3 127 30-170 107-253 (338)
17 2gno_A DNA polymerase III, gam 99.6 7.1E-15 2.4E-19 125.1 10.2 112 5-146 63-175 (305)
18 1in4_A RUVB, holliday junction 99.6 9.7E-14 3.3E-18 118.7 16.0 128 30-171 103-250 (334)
19 2v1u_A Cell division control p 99.5 7.3E-14 2.5E-18 118.9 14.0 149 30-189 131-296 (387)
20 3te6_A Regulatory protein SIR3 99.5 7.5E-15 2.6E-19 125.9 7.2 131 30-171 133-315 (318)
21 3bos_A Putative DNA replicatio 99.5 7.7E-14 2.6E-18 111.3 12.2 129 30-169 105-241 (242)
22 1hqc_A RUVB; extended AAA-ATPa 99.5 1.7E-13 5.8E-18 115.0 14.8 127 30-170 91-237 (324)
23 1fnn_A CDC6P, cell division co 99.5 7.3E-13 2.5E-17 113.1 18.8 150 30-189 126-294 (389)
24 2qby_B CDC6 homolog 3, cell di 99.5 2.7E-13 9.3E-18 116.0 12.6 146 31-189 135-290 (384)
25 1g8p_A Magnesium-chelatase 38 99.5 6.5E-13 2.2E-17 112.4 13.4 129 30-171 145-322 (350)
26 2z4s_A Chromosomal replication 99.4 1.1E-12 3.8E-17 116.4 12.7 132 30-172 195-333 (440)
27 3syl_A Protein CBBX; photosynt 99.4 4.1E-13 1.4E-17 112.1 8.2 128 30-165 131-280 (309)
28 1sxj_A Activator 1 95 kDa subu 99.4 7.9E-13 2.7E-17 119.4 10.1 122 29-169 148-272 (516)
29 2qby_A CDC6 homolog 1, cell di 99.4 2.5E-12 8.6E-17 109.1 12.1 131 30-171 129-272 (386)
30 1ofh_A ATP-dependent HSL prote 99.4 2.4E-12 8.2E-17 106.8 10.2 132 30-170 117-298 (310)
31 2r44_A Uncharacterized protein 99.4 2.5E-11 8.5E-16 102.7 16.2 131 31-171 111-297 (331)
32 1l8q_A Chromosomal replication 99.3 1.1E-11 3.7E-16 104.8 12.4 132 30-173 99-242 (324)
33 3vfd_A Spastin; ATPase, microt 99.2 5E-10 1.7E-14 97.2 14.2 129 30-172 208-366 (389)
34 4fcw_A Chaperone protein CLPB; 99.1 8.9E-11 3E-15 97.8 7.3 120 30-149 120-276 (311)
35 2bjv_A PSP operon transcriptio 99.1 7.1E-10 2.4E-14 90.9 10.5 126 30-164 101-250 (265)
36 3k1j_A LON protease, ATP-depen 99.1 1.3E-09 4.3E-14 100.2 13.1 130 30-170 202-374 (604)
37 3b9p_A CG5977-PA, isoform A; A 99.1 4.2E-09 1.4E-13 87.4 15.2 128 30-171 114-272 (297)
38 2qp9_X Vacuolar protein sortin 99.1 1.8E-08 6.3E-13 86.7 19.4 109 30-152 144-269 (355)
39 3m6a_A ATP-dependent protease 99.0 3.3E-10 1.1E-14 103.0 8.3 127 30-169 176-339 (543)
40 1um8_A ATP-dependent CLP prote 99.0 4.5E-10 1.5E-14 96.8 8.4 139 30-168 138-362 (376)
41 3h4m_A Proteasome-activating n 99.0 8.5E-09 2.9E-13 84.9 14.4 129 30-172 111-259 (285)
42 3eie_A Vacuolar protein sortin 99.0 6.5E-09 2.2E-13 88.0 14.0 108 30-151 111-235 (322)
43 2qz4_A Paraplegin; AAA+, SPG7, 99.0 3.7E-09 1.3E-13 85.7 11.9 126 30-169 99-247 (262)
44 3f9v_A Minichromosome maintena 99.0 1.3E-09 4.5E-14 100.2 9.9 145 30-174 392-590 (595)
45 1ojl_A Transcriptional regulat 98.9 6.4E-09 2.2E-13 87.8 11.8 126 30-164 97-245 (304)
46 3d8b_A Fidgetin-like protein 1 98.9 1.8E-08 6.2E-13 86.6 14.8 128 30-171 177-334 (357)
47 1r6b_X CLPA protein; AAA+, N-t 98.9 2.3E-09 8E-14 100.3 9.4 120 30-149 558-713 (758)
48 1xwi_A SKD1 protein; VPS4B, AA 98.9 9.7E-08 3.3E-12 81.1 17.8 108 30-151 106-230 (322)
49 3pxi_A Negative regulator of g 98.9 6E-09 2E-13 97.8 10.4 107 30-148 580-721 (758)
50 1w5s_A Origin recognition comp 98.8 1.5E-08 5.1E-13 87.0 9.8 130 30-170 139-292 (412)
51 1lv7_A FTSH; alpha/beta domain 98.8 3.1E-08 1.1E-12 80.6 10.9 125 30-170 105-251 (257)
52 2zan_A Vacuolar protein sortin 98.8 4.2E-08 1.4E-12 86.9 12.0 109 30-152 228-353 (444)
53 1qvr_A CLPB protein; coiled co 98.8 1E-08 3.5E-13 97.5 8.5 120 30-149 661-817 (854)
54 1r6b_X CLPA protein; AAA+, N-t 98.8 3.9E-08 1.3E-12 92.0 12.2 133 30-171 279-433 (758)
55 1d2n_A N-ethylmaleimide-sensit 98.7 1.4E-08 4.9E-13 83.4 7.1 103 30-151 125-249 (272)
56 3nbx_X ATPase RAVA; AAA+ ATPas 98.7 6.9E-08 2.4E-12 87.2 11.6 126 30-165 110-280 (500)
57 4b4t_J 26S protease regulatory 98.7 7.3E-07 2.5E-11 78.6 17.6 126 30-170 242-388 (405)
58 3dzd_A Transcriptional regulat 98.7 5.1E-08 1.8E-12 84.5 8.4 116 30-151 223-361 (368)
59 1ixz_A ATP-dependent metallopr 98.6 1.7E-07 5.7E-12 76.1 10.2 125 29-168 108-253 (254)
60 2ce7_A Cell division protein F 98.6 2E-07 6.8E-12 83.7 11.4 126 30-171 109-256 (476)
61 3f8t_A Predicted ATPase involv 98.6 1.2E-06 4.2E-11 78.7 16.3 144 30-175 301-487 (506)
62 4b4t_L 26S protease subunit RP 98.6 2.6E-06 8.7E-11 75.8 18.2 127 30-170 275-421 (437)
63 1iy2_A ATP-dependent metallopr 98.6 3.6E-07 1.2E-11 75.4 11.2 124 30-168 133-277 (278)
64 1g41_A Heat shock protein HSLU 98.6 3.6E-07 1.2E-11 81.4 11.8 134 31-173 252-435 (444)
65 4b4t_I 26S protease regulatory 98.6 1.8E-06 6E-11 76.7 15.7 125 30-169 276-421 (437)
66 2r62_A Cell division protease 98.6 6.2E-09 2.1E-13 85.1 -0.2 125 30-169 104-251 (268)
67 3pxg_A Negative regulator of g 98.6 3.1E-07 1.1E-11 81.8 10.4 110 30-152 268-386 (468)
68 4b4t_H 26S protease regulatory 98.5 3.5E-06 1.2E-10 75.4 16.7 125 30-169 303-448 (467)
69 1qvr_A CLPB protein; coiled co 98.5 8.5E-08 2.9E-12 91.2 6.5 113 30-152 264-393 (854)
70 4b4t_M 26S protease regulatory 98.5 2.4E-06 8.3E-11 75.9 15.3 127 30-171 275-422 (434)
71 3hu3_A Transitional endoplasmi 98.5 1.2E-06 4.3E-11 78.7 12.3 126 30-170 298-458 (489)
72 3cf0_A Transitional endoplasmi 98.4 2.1E-06 7.2E-11 71.8 11.8 128 30-171 109-281 (301)
73 4b4t_K 26S protease regulatory 98.4 7.8E-06 2.7E-10 72.4 15.6 126 30-170 266-413 (428)
74 1ny5_A Transcriptional regulat 98.4 9E-07 3.1E-11 77.0 9.3 128 30-166 232-382 (387)
75 3hws_A ATP-dependent CLP prote 98.4 3.2E-07 1.1E-11 78.5 6.2 85 84-168 239-346 (363)
76 2dhr_A FTSH; AAA+ protein, hex 98.4 6.8E-07 2.3E-11 80.7 8.5 127 29-170 123-270 (499)
77 1jbk_A CLPB protein; beta barr 98.2 1.2E-06 4.1E-11 66.2 5.2 71 30-109 116-194 (195)
78 3pxi_A Negative regulator of g 98.2 2.9E-06 1E-10 79.5 8.8 110 30-152 268-386 (758)
79 2qen_A Walker-type ATPase; unk 98.0 0.00013 4.5E-09 60.5 13.1 109 30-144 129-245 (350)
80 3t15_A Ribulose bisphosphate c 97.8 0.00088 3E-08 55.7 16.1 93 29-138 99-221 (293)
81 2p65_A Hypothetical protein PF 97.7 3.5E-05 1.2E-09 58.1 4.7 63 30-101 116-187 (187)
82 2fna_A Conserved hypothetical 97.4 0.00048 1.6E-08 57.1 7.9 109 30-145 138-251 (357)
83 3co5_A Putative two-component 97.4 0.00021 7.3E-09 53.1 5.0 59 30-100 76-142 (143)
84 3n70_A Transport activator; si 97.2 0.00055 1.9E-08 50.8 5.6 64 31-100 78-144 (145)
85 3cf2_A TER ATPase, transitiona 97.1 0.0015 5.2E-08 62.0 8.8 108 29-151 297-422 (806)
86 2x8a_A Nuclear valosin-contain 97.0 0.021 7.2E-07 46.9 14.4 131 29-171 103-264 (274)
87 3cf2_A TER ATPase, transitiona 96.7 0.002 7E-08 61.1 6.1 105 30-151 571-698 (806)
88 1u0j_A DNA replication protein 96.7 0.0024 8.3E-08 53.1 5.8 88 31-122 149-259 (267)
89 1ypw_A Transitional endoplasmi 96.6 2.2E-05 7.6E-10 74.4 -8.1 110 30-153 571-700 (806)
90 1taf_A TFIID TBP associated fa 96.4 0.024 8.3E-07 37.5 8.2 61 108-172 6-67 (68)
91 1ypw_A Transitional endoplasmi 96.3 0.043 1.5E-06 51.9 12.6 106 10-135 283-405 (806)
92 2kjq_A DNAA-related protein; s 96.0 0.0071 2.4E-07 45.3 4.7 51 30-93 84-140 (149)
93 4akg_A Glutathione S-transfera 95.3 0.028 9.4E-07 59.6 7.2 72 31-115 1338-1433(2695)
94 2orw_A Thymidine kinase; TMTK, 94.8 0.018 6.1E-07 44.6 3.2 62 30-100 77-139 (184)
95 4dra_A Centromere protein S; D 94.4 0.16 5.5E-06 36.7 7.1 60 106-169 34-93 (113)
96 1ye8_A Protein THEP1, hypothet 94.3 0.041 1.4E-06 42.3 4.2 70 30-111 100-174 (178)
97 3b0b_B CENP-S, centromere prot 94.0 0.25 8.5E-06 35.4 7.5 60 107-170 27-86 (107)
98 3v9r_A MHF1, uncharacterized p 93.9 0.17 6E-06 35.1 6.3 49 116-168 29-77 (90)
99 1taf_B TFIID TBP associated fa 93.7 0.23 8E-06 32.8 6.4 57 109-169 12-69 (70)
100 3kw6_A 26S protease regulatory 93.6 0.26 8.8E-06 32.5 6.7 74 98-172 1-74 (78)
101 3ec2_A DNA replication protein 93.4 0.18 6.3E-06 37.8 6.4 37 30-66 101-141 (180)
102 4ag6_A VIRB4 ATPase, type IV s 92.6 0.52 1.8E-05 40.1 8.7 86 30-135 263-362 (392)
103 3vh5_A CENP-S; histone fold, c 92.5 0.44 1.5E-05 35.6 7.0 55 110-168 30-84 (140)
104 2krk_A 26S protease regulatory 91.7 0.38 1.3E-05 32.6 5.6 72 98-170 9-80 (86)
105 1ku5_A HPHA, archaeal histon; 91.7 0.97 3.3E-05 29.4 7.3 63 100-169 7-69 (70)
106 2r2a_A Uncharacterized protein 90.3 0.082 2.8E-06 41.6 1.1 57 30-99 88-152 (199)
107 1tue_A Replication protein E1; 90.1 0.26 8.8E-06 39.5 3.9 59 30-98 104-177 (212)
108 2yfw_B Histone H4, H4; cell cy 89.8 0.87 3E-05 32.1 6.1 63 100-170 30-93 (103)
109 1tzy_D Histone H4-VI; histone- 89.6 0.9 3.1E-05 32.0 6.1 63 100-170 30-93 (103)
110 1f6v_A DNA transposition prote 89.6 0.21 7E-06 34.8 2.5 70 94-169 7-77 (91)
111 1id3_B Histone H4; nucleosome 89.3 0.99 3.4E-05 31.8 6.1 66 97-170 26-92 (102)
112 4dra_E Centromere protein X; D 89.3 0.74 2.5E-05 31.5 5.2 70 81-170 10-79 (84)
113 2iut_A DNA translocase FTSK; n 89.2 1 3.6E-05 41.1 7.7 70 29-111 343-421 (574)
114 3b0b_C CENP-X, centromere prot 89.1 0.97 3.3E-05 30.7 5.6 70 81-170 6-75 (81)
115 2hue_C Histone H4; mini beta s 88.7 0.92 3.2E-05 30.7 5.4 55 111-169 18-73 (84)
116 3aji_B S6C, proteasome (prosom 88.3 1.8 6.2E-05 28.5 6.7 71 100-171 1-71 (83)
117 4akg_A Glutathione S-transfera 87.3 14 0.00047 39.6 15.4 108 31-150 699-839 (2695)
118 3b0c_T CENP-T, centromere prot 87.3 2.4 8.2E-05 30.3 7.1 63 100-169 8-70 (111)
119 3vlf_B 26S protease regulatory 86.5 1.8 6.3E-05 29.1 5.9 69 101-170 2-70 (88)
120 2b8t_A Thymidine kinase; deoxy 85.1 1.3 4.4E-05 35.3 5.2 36 30-67 90-125 (223)
121 3vkg_A Dynein heavy chain, cyt 85.0 1.6 5.4E-05 47.3 7.1 75 31-113 1376-1469(3245)
122 1b67_A Protein (histone HMFA); 84.5 3.9 0.00013 26.1 6.5 61 103-170 6-66 (68)
123 2a5y_B CED-4; apoptosis; HET: 82.7 2.2 7.4E-05 38.0 6.2 92 31-145 245-337 (549)
124 1h3o_B Transcription initiatio 82.5 8.4 0.00029 25.6 7.6 64 100-169 6-69 (76)
125 3b0c_W CENP-W, centromere prot 81.4 5.6 0.00019 26.1 6.4 67 100-172 5-71 (76)
126 3n53_A Response regulator rece 79.8 7 0.00024 26.9 7.0 73 30-115 47-122 (140)
127 3cu5_A Two component transcrip 78.9 12 0.0004 26.0 8.0 72 30-113 50-121 (141)
128 3b6e_A Interferon-induced heli 78.9 1.9 6.4E-05 32.5 3.9 14 30-43 163-176 (216)
129 1xx6_A Thymidine kinase; NESG, 76.8 3.1 0.00011 32.2 4.6 36 30-67 82-117 (191)
130 2j9r_A Thymidine kinase; TK1, 76.5 2.6 8.9E-05 33.5 4.1 37 30-68 102-138 (214)
131 2fz4_A DNA repair protein RAD2 76.2 1.5 5E-05 34.8 2.6 24 30-53 193-216 (237)
132 1f1e_A Histone fold protein; a 75.8 9.1 0.00031 28.9 6.8 63 100-169 83-145 (154)
133 3llm_A ATP-dependent RNA helic 75.4 2.3 7.8E-05 33.2 3.6 36 30-65 177-215 (235)
134 1mvo_A PHOP response regulator 75.4 12 0.00043 25.3 7.2 73 30-115 48-121 (136)
135 3e1s_A Exodeoxyribonuclease V, 75.2 2 6.8E-05 38.9 3.5 36 29-66 279-314 (574)
136 3h5i_A Response regulator/sens 74.2 18 0.00063 24.8 8.0 74 29-114 50-123 (140)
137 3sfz_A APAF-1, apoptotic pepti 74.1 18 0.00063 34.4 10.1 92 31-147 238-330 (1249)
138 2qv0_A Protein MRKE; structura 73.8 12 0.00042 25.6 6.9 71 30-114 56-126 (143)
139 3upu_A ATP-dependent DNA helic 73.7 3.6 0.00012 35.7 4.7 36 29-66 128-163 (459)
140 1dbw_A Transcriptional regulat 73.6 6.4 0.00022 26.6 5.2 73 29-114 47-120 (126)
141 2v6i_A RNA helicase; membrane, 72.5 5.9 0.0002 34.1 5.8 14 30-43 94-107 (431)
142 1yio_A Response regulatory pro 72.0 19 0.00065 26.6 8.0 73 29-114 48-121 (208)
143 3kto_A Response regulator rece 71.6 6.6 0.00023 27.0 5.0 73 30-115 51-126 (136)
144 1n1j_A NF-YB; histone-like PAI 71.2 20 0.00069 24.2 7.2 62 103-169 12-73 (93)
145 1rif_A DAR protein, DNA helica 70.8 2.2 7.5E-05 34.2 2.5 34 30-65 226-259 (282)
146 1jfi_B DR1 protein, transcript 70.1 35 0.0012 26.3 9.7 71 100-176 16-88 (179)
147 2qxy_A Response regulator; reg 70.1 14 0.00047 25.3 6.4 74 29-115 48-121 (142)
148 3f6c_A Positive transcription 69.8 12 0.0004 25.4 5.9 75 30-116 47-121 (134)
149 1w4r_A Thymidine kinase; type 69.6 4.9 0.00017 31.5 4.1 36 31-69 93-128 (195)
150 2i3b_A HCR-ntpase, human cance 69.3 9.8 0.00034 29.0 5.9 70 29-111 105-182 (189)
151 1w36_D RECD, exodeoxyribonucle 69.0 3.3 0.00011 37.6 3.4 36 29-66 262-297 (608)
152 1t6n_A Probable ATP-dependent 68.9 3.4 0.00012 31.5 3.1 36 30-65 159-197 (220)
153 1ys7_A Transcriptional regulat 68.7 24 0.00082 26.5 8.1 74 29-115 51-125 (233)
154 1z6t_A APAF-1, apoptotic prote 67.8 16 0.00055 32.1 7.7 46 98-146 284-329 (591)
155 3cg4_A Response regulator rece 66.9 27 0.00092 23.7 8.5 72 30-114 52-126 (142)
156 3klo_A Transcriptional regulat 66.2 26 0.00087 26.4 7.7 86 29-128 54-141 (225)
157 2ius_A DNA translocase FTSK; n 65.0 7.5 0.00026 34.8 4.9 70 30-111 298-375 (512)
158 3jte_A Response regulator rece 64.9 13 0.00045 25.5 5.4 75 29-115 49-123 (143)
159 3vkg_A Dynein heavy chain, cyt 64.8 1.4E+02 0.0046 33.0 14.8 108 31-150 658-799 (3245)
160 3e2i_A Thymidine kinase; Zn-bi 64.7 9.6 0.00033 30.4 5.0 35 30-66 102-136 (219)
161 1jbe_A Chemotaxis protein CHEY 64.7 12 0.00039 25.2 5.0 74 30-116 50-126 (128)
162 1tmy_A CHEY protein, TMY; chem 63.8 7.4 0.00025 25.9 3.7 70 30-112 48-118 (120)
163 3gl9_A Response regulator; bet 63.3 9.4 0.00032 25.8 4.3 72 29-113 46-120 (122)
164 1f1e_A Histone fold protein; a 62.1 24 0.00081 26.5 6.5 63 101-169 6-68 (154)
165 3h1t_A Type I site-specific re 61.9 5 0.00017 35.7 3.2 36 30-65 303-338 (590)
166 3heb_A Response regulator rece 61.9 10 0.00035 26.5 4.4 74 29-115 59-135 (152)
167 3nhm_A Response regulator; pro 61.7 28 0.00095 23.3 6.6 73 30-116 48-123 (133)
168 1zh2_A KDP operon transcriptio 61.5 8.8 0.0003 25.4 3.8 72 30-114 46-117 (121)
169 1k68_A Phytochrome response re 60.7 10 0.00035 25.6 4.1 73 29-114 55-130 (140)
170 1g5t_A COB(I)alamin adenosyltr 60.2 27 0.00092 27.1 6.8 35 29-66 120-161 (196)
171 1wp9_A ATP-dependent RNA helic 58.0 9.1 0.00031 31.8 4.0 37 29-65 125-163 (494)
172 2jss_A Chimera of histone H2B. 57.5 49 0.0017 25.5 7.9 65 105-175 9-73 (192)
173 1qkk_A DCTD, C4-dicarboxylate 57.4 15 0.00052 25.7 4.6 73 29-114 47-120 (155)
174 1k66_A Phytochrome response re 57.4 14 0.00046 25.3 4.3 73 29-114 62-137 (149)
175 1s8n_A Putative antiterminator 57.1 13 0.00043 27.7 4.3 72 30-114 59-130 (205)
176 1srr_A SPO0F, sporulation resp 57.1 19 0.00064 24.0 4.9 72 30-113 48-119 (124)
177 3cnb_A DNA-binding response re 56.7 24 0.00082 23.9 5.5 74 30-115 55-130 (143)
178 3gt7_A Sensor protein; structu 56.6 20 0.00069 25.1 5.2 75 29-116 51-128 (154)
179 3i42_A Response regulator rece 56.5 40 0.0014 22.3 8.0 70 30-113 48-120 (127)
180 2dzn_B 26S protease regulatory 55.3 5.9 0.0002 26.0 1.9 48 125-172 22-69 (82)
181 3r0j_A Possible two component 55.2 16 0.00055 28.2 4.8 73 30-115 68-141 (250)
182 4g92_C HAPE; transcription fac 55.0 29 0.001 24.7 5.7 65 99-169 41-105 (119)
183 3q9s_A DNA-binding response re 54.9 21 0.0007 27.8 5.4 73 30-115 82-154 (249)
184 2gxq_A Heat resistant RNA depe 54.6 3.1 0.00011 31.1 0.5 36 30-65 145-182 (207)
185 1qde_A EIF4A, translation init 54.5 3.2 0.00011 31.6 0.5 14 30-43 156-169 (224)
186 2qsj_A DNA-binding response re 54.5 14 0.00049 25.7 4.1 76 29-116 50-125 (154)
187 2zay_A Response regulator rece 54.3 22 0.00077 24.4 5.1 73 30-115 53-128 (147)
188 2whx_A Serine protease/ntpase/ 54.2 15 0.0005 33.5 4.9 15 30-44 278-292 (618)
189 3kht_A Response regulator; PSI 53.2 17 0.00059 24.9 4.3 73 30-115 52-128 (144)
190 2w58_A DNAI, primosome compone 52.6 5.8 0.0002 29.7 1.7 36 31-66 117-157 (202)
191 2oca_A DAR protein, ATP-depend 52.2 6.6 0.00022 34.0 2.2 23 30-52 226-248 (510)
192 3snk_A Response regulator CHEY 52.1 4.7 0.00016 27.8 1.0 70 30-112 60-130 (135)
193 2jlq_A Serine protease subunit 52.1 14 0.00048 31.8 4.3 15 30-44 111-125 (451)
194 1vec_A ATP-dependent RNA helic 52.1 6.6 0.00023 29.3 2.0 36 30-65 147-184 (206)
195 1o6d_A Hypothetical UPF0247 pr 50.8 17 0.00057 27.6 4.0 63 32-109 68-134 (163)
196 3t6k_A Response regulator rece 50.4 20 0.00069 24.5 4.3 74 30-116 49-125 (136)
197 3cg0_A Response regulator rece 50.4 25 0.00085 23.7 4.7 74 30-115 55-128 (140)
198 1wgl_A TOLL-interacting protei 50.2 19 0.00064 22.6 3.6 28 119-147 22-49 (59)
199 2qgz_A Helicase loader, putati 49.8 5.3 0.00018 32.9 1.1 38 30-67 215-257 (308)
200 2gwr_A DNA-binding response re 49.8 48 0.0017 25.1 6.8 73 30-115 50-122 (238)
201 3iuy_A Probable ATP-dependent 49.7 5.2 0.00018 30.6 1.0 14 30-43 168-181 (228)
202 2orv_A Thymidine kinase; TP4A 49.7 25 0.00086 28.2 5.1 38 30-70 91-128 (234)
203 1ns5_A Hypothetical protein YB 49.2 18 0.0006 27.2 3.9 64 31-109 68-135 (155)
204 3o8b_A HCV NS3 protease/helica 49.2 19 0.00066 33.2 4.9 26 30-55 319-344 (666)
205 2wv9_A Flavivirin protease NS2 49.0 22 0.00076 32.7 5.3 35 30-65 333-370 (673)
206 3to5_A CHEY homolog; alpha(5)b 48.9 17 0.00058 26.1 3.7 71 30-113 58-131 (134)
207 2byk_B Chrac-14; nucleosome sl 48.9 72 0.0025 22.9 9.0 58 117-178 26-85 (128)
208 3dkp_A Probable ATP-dependent 48.6 6.1 0.00021 30.6 1.3 25 30-54 176-204 (245)
209 1yks_A Genome polyprotein [con 48.3 21 0.00072 30.6 4.9 14 30-43 100-113 (440)
210 1otr_A Protein CUE2; protein-p 48.2 19 0.00066 21.7 3.3 27 119-146 17-43 (49)
211 3cz5_A Two-component response 48.2 22 0.00074 24.7 4.2 88 30-131 52-140 (153)
212 1n1j_B NF-YC; histone-like PAI 48.0 28 0.00097 23.7 4.6 47 119-169 37-83 (97)
213 2pl3_A Probable ATP-dependent 47.6 5.7 0.00019 30.6 1.0 36 30-65 172-209 (236)
214 2qzj_A Two-component response 47.6 19 0.00065 24.7 3.7 72 30-114 49-120 (136)
215 1wrb_A DJVLGB; RNA helicase, D 47.1 6.9 0.00024 30.5 1.4 13 30-42 175-187 (253)
216 2o0j_A Terminase, DNA packagin 47.0 32 0.0011 29.4 5.7 35 31-65 275-311 (385)
217 1xti_A Probable ATP-dependent 46.8 8.7 0.0003 31.5 2.0 36 30-65 153-191 (391)
218 2rdm_A Response regulator rece 46.7 60 0.002 21.4 8.2 68 30-115 51-123 (132)
219 2fwr_A DNA repair protein RAD2 46.3 8.7 0.0003 32.8 2.0 24 30-53 193-216 (472)
220 3eul_A Possible nitrate/nitrit 46.1 30 0.001 24.0 4.7 86 30-128 62-147 (152)
221 3ilh_A Two component response 45.8 35 0.0012 23.1 4.9 74 29-114 60-138 (146)
222 1mb3_A Cell division response 45.7 46 0.0016 21.7 5.4 71 30-113 46-119 (124)
223 2dhy_A CUE domain-containing p 45.4 38 0.0013 21.7 4.6 48 96-148 12-59 (67)
224 2rjn_A Response regulator rece 45.1 31 0.0011 23.9 4.6 72 30-114 52-125 (154)
225 2z83_A Helicase/nucleoside tri 44.9 26 0.00088 30.2 4.9 14 30-43 113-126 (459)
226 3a10_A Response regulator; pho 44.7 46 0.0016 21.5 5.2 68 30-112 46-114 (116)
227 1q0u_A Bstdead; DEAD protein, 44.3 6.8 0.00023 29.8 0.9 36 30-65 151-188 (219)
228 2nqb_D Histone H2B; nucleosome 43.9 88 0.003 22.6 7.1 66 104-175 38-103 (123)
229 1tzy_B Histone H2B; histone-fo 43.5 91 0.0031 22.6 7.1 66 104-175 41-106 (126)
230 2oxc_A Probable ATP-dependent 43.1 6.9 0.00023 30.1 0.8 12 30-41 167-178 (230)
231 2j48_A Two-component sensor ki 43.0 62 0.0021 20.5 6.3 66 30-111 46-114 (119)
232 1to0_A Hypothetical UPF0247 pr 43.0 31 0.0011 26.1 4.5 64 32-109 73-140 (167)
233 3bor_A Human initiation factor 42.4 6.1 0.00021 30.6 0.4 13 30-42 174-186 (237)
234 1kgs_A DRRD, DNA binding respo 42.3 20 0.0007 26.7 3.4 73 30-115 47-120 (225)
235 4fak_A Ribosomal RNA large sub 41.7 39 0.0013 25.5 4.9 65 31-109 76-144 (163)
236 1s2m_A Putative ATP-dependent 40.9 22 0.00075 29.2 3.7 26 30-55 164-190 (400)
237 4dad_A Putative pilus assembly 40.9 72 0.0025 21.6 6.0 75 29-115 67-141 (146)
238 3f6p_A Transcriptional regulat 40.7 49 0.0017 21.8 5.0 72 29-113 46-117 (120)
239 3ly5_A ATP-dependent RNA helic 40.4 7.6 0.00026 30.8 0.7 14 30-43 202-215 (262)
240 3pey_A ATP-dependent RNA helic 39.7 13 0.00043 30.3 1.9 14 30-43 146-159 (395)
241 1dz3_A Stage 0 sporulation pro 39.6 21 0.00073 23.9 2.9 73 30-115 49-123 (130)
242 1a04_A Nitrate/nitrite respons 39.5 50 0.0017 24.4 5.3 74 30-116 52-126 (215)
243 3fe2_A Probable ATP-dependent 39.4 8.9 0.0003 29.7 0.9 14 30-43 177-190 (242)
244 1hv8_A Putative ATP-dependent 39.3 10 0.00035 30.6 1.3 36 30-65 148-185 (367)
245 3fmo_B ATP-dependent RNA helic 39.2 11 0.00036 30.7 1.4 14 30-43 236-249 (300)
246 2qvg_A Two component response 39.2 44 0.0015 22.5 4.6 73 29-113 59-133 (143)
247 1p2f_A Response regulator; DRR 39.2 46 0.0016 24.7 5.0 74 29-115 43-117 (220)
248 2pl1_A Transcriptional regulat 39.2 50 0.0017 21.4 4.7 72 30-114 45-117 (121)
249 4e7p_A Response regulator; DNA 39.0 46 0.0016 22.9 4.7 82 30-124 67-148 (150)
250 3nqu_A Histone H3-like centrom 38.0 94 0.0032 22.9 6.3 61 106-170 68-132 (140)
251 4a2p_A RIG-I, retinoic acid in 37.7 28 0.00097 29.8 4.0 14 30-43 131-144 (556)
252 2jba_A Phosphate regulon trans 37.4 16 0.00055 24.3 1.9 73 29-114 46-121 (127)
253 3vkw_A Replicase large subunit 37.4 46 0.0016 29.2 5.3 34 30-66 235-268 (446)
254 2r8r_A Sensor protein; KDPD, P 37.1 1.3E+02 0.0045 23.8 7.5 99 30-137 85-197 (228)
255 2f8n_G Core histone macro-H2A. 37.0 35 0.0012 24.4 3.7 63 101-169 24-86 (120)
256 1f2t_B RAD50 ABC-ATPase; DNA d 36.8 63 0.0022 23.4 5.3 37 30-66 82-121 (148)
257 2a9o_A Response regulator; ess 36.8 52 0.0018 21.2 4.5 71 30-113 46-116 (120)
258 2ykg_A Probable ATP-dependent 36.8 31 0.0011 30.9 4.2 14 30-43 137-150 (696)
259 1f66_C Histone H2A.Z; nucleoso 36.3 46 0.0016 24.1 4.3 63 102-169 30-92 (128)
260 3r45_A Histone H3-like centrom 36.3 75 0.0025 23.9 5.5 62 104-169 82-147 (156)
261 2oqr_A Sensory transduction pr 36.3 27 0.00092 26.2 3.3 73 30-115 49-121 (230)
262 3eqz_A Response regulator; str 36.1 52 0.0018 21.8 4.5 71 30-114 47-124 (135)
263 2w0m_A SSO2452; RECA, SSPF, un 35.9 73 0.0025 23.5 5.7 36 30-66 122-166 (235)
264 2nqb_C Histone H2A; nucleosome 35.8 37 0.0013 24.4 3.7 63 101-169 25-87 (123)
265 3h1g_A Chemotaxis protein CHEY 35.6 46 0.0016 22.2 4.1 71 30-113 52-125 (129)
266 3euj_A Chromosome partition pr 35.4 47 0.0016 29.4 5.0 37 28-65 413-449 (483)
267 2yfv_A Histone H3-like centrom 34.9 1.1E+02 0.0036 21.2 5.8 61 105-169 33-98 (100)
268 1xhf_A DYE resistance, aerobic 34.9 51 0.0018 21.5 4.3 71 30-113 48-118 (123)
269 1tzy_A Histone H2A-IV; histone 34.8 39 0.0013 24.5 3.7 63 101-169 27-89 (129)
270 2i4r_A V-type ATP synthase sub 34.2 47 0.0016 22.9 3.9 48 12-65 40-87 (102)
271 1zgz_A Torcad operon transcrip 33.8 53 0.0018 21.4 4.2 72 30-114 47-118 (122)
272 3sqw_A ATP-dependent RNA helic 33.6 22 0.00077 31.4 2.7 25 30-54 176-204 (579)
273 2j0s_A ATP-dependent RNA helic 33.5 19 0.00065 29.8 2.1 36 30-65 180-217 (410)
274 2p6r_A Afuhel308 helicase; pro 33.1 32 0.0011 31.3 3.7 13 30-42 139-151 (702)
275 1wj7_A Hypothetical protein (R 32.9 83 0.0028 22.0 5.0 41 103-146 37-77 (104)
276 2v1x_A ATP-dependent DNA helic 32.8 29 0.00099 31.2 3.3 12 31-42 167-178 (591)
277 3i5x_A ATP-dependent RNA helic 32.7 24 0.00081 30.8 2.7 24 30-53 227-254 (563)
278 3hdv_A Response regulator; PSI 32.6 67 0.0023 21.4 4.6 74 30-115 53-127 (136)
279 3fht_A ATP-dependent RNA helic 32.4 16 0.00056 30.0 1.5 12 30-41 169-180 (412)
280 1oyw_A RECQ helicase, ATP-depe 32.3 16 0.00056 32.2 1.6 36 30-65 140-182 (523)
281 3kta_B Chromosome segregation 32.2 79 0.0027 23.6 5.3 37 30-66 87-125 (173)
282 2dr3_A UPF0273 protein PH0284; 32.1 1.6E+02 0.0053 21.9 7.2 36 30-66 129-171 (247)
283 3ber_A Probable ATP-dependent 32.0 14 0.00047 29.0 0.9 14 30-43 187-200 (249)
284 3tbk_A RIG-I helicase domain; 31.6 34 0.0012 29.2 3.4 14 30-43 128-141 (555)
285 3hdg_A Uncharacterized protein 31.4 61 0.0021 21.6 4.3 74 30-115 52-125 (137)
286 3eiq_A Eukaryotic initiation f 31.0 15 0.00051 30.3 1.0 36 30-65 184-221 (414)
287 1dc7_A NTRC, nitrogen regulati 30.9 36 0.0012 22.2 2.9 72 30-114 48-120 (124)
288 2db3_A ATP-dependent RNA helic 30.9 25 0.00087 29.8 2.5 13 30-42 204-216 (434)
289 3m6m_D Sensory/regulatory prot 30.8 70 0.0024 21.9 4.5 21 93-113 114-134 (143)
290 2keb_A DNA polymerase subunit 30.3 54 0.0018 22.9 3.6 66 98-168 24-89 (101)
291 2gkg_A Response regulator homo 30.1 42 0.0014 21.9 3.1 71 30-113 50-123 (127)
292 3b2n_A Uncharacterized protein 30.1 73 0.0025 21.3 4.5 72 30-114 50-122 (133)
293 1e69_A Chromosome segregation 30.0 79 0.0027 25.6 5.3 37 30-66 242-280 (322)
294 2f8n_K Histone H2A type 1; nuc 29.9 42 0.0014 25.1 3.2 62 102-169 47-108 (149)
295 1fuu_A Yeast initiation factor 29.7 16 0.00053 29.9 0.9 13 30-42 163-175 (394)
296 3ih6_A Putative zinc protease; 29.4 1E+02 0.0035 22.3 5.5 18 158-175 167-184 (197)
297 1qo0_D AMIR; binding protein, 29.4 77 0.0026 22.9 4.8 22 92-113 102-123 (196)
298 2va8_A SSO2462, SKI2-type heli 29.4 20 0.00068 32.6 1.6 13 30-42 146-158 (715)
299 3fho_A ATP-dependent RNA helic 29.1 18 0.00061 31.6 1.2 14 30-43 260-273 (508)
300 3kcn_A Adenylate cyclase homol 28.9 56 0.0019 22.5 3.7 74 30-115 49-123 (151)
301 2hue_B Histone H3; mini beta s 28.8 1.3E+02 0.0043 19.8 6.9 61 106-170 10-72 (77)
302 2z0m_A 337AA long hypothetical 28.4 14 0.00048 29.4 0.4 14 30-43 130-143 (337)
303 3lte_A Response regulator; str 28.1 89 0.0031 20.5 4.6 73 30-115 51-125 (132)
304 2bsq_E FITA, trafficking prote 28.0 44 0.0015 22.0 2.7 33 98-131 6-38 (77)
305 2qr3_A Two-component system re 27.8 55 0.0019 21.9 3.5 74 30-115 48-126 (140)
306 4a15_A XPD helicase, ATP-depen 27.8 16 0.00055 33.1 0.7 14 30-43 205-218 (620)
307 4aby_A DNA repair protein RECN 27.6 77 0.0026 26.3 5.0 36 31-66 317-354 (415)
308 3auy_A DNA double-strand break 27.3 1E+02 0.0035 25.5 5.7 37 30-66 306-344 (371)
309 3fmp_B ATP-dependent RNA helic 27.2 20 0.00069 30.6 1.2 13 30-42 236-248 (479)
310 2b4a_A BH3024; flavodoxin-like 27.0 77 0.0026 21.2 4.2 71 29-116 60-132 (138)
311 3hv2_A Response regulator/HD d 27.0 94 0.0032 21.3 4.7 73 30-114 59-132 (153)
312 1vt4_I APAF-1 related killer D 26.5 2.1E+02 0.007 28.5 8.1 85 31-147 246-336 (1221)
313 3qkt_A DNA double-strand break 26.5 95 0.0033 25.3 5.3 38 29-66 272-312 (339)
314 1i3c_A Response regulator RCP1 26.0 91 0.0031 21.3 4.5 73 29-114 61-136 (149)
315 2eyq_A TRCF, transcription-rep 26.0 59 0.002 31.8 4.3 23 30-52 726-748 (1151)
316 3nqj_A Histone H3-like centrom 25.7 1.5E+02 0.0051 19.7 7.3 60 106-169 10-73 (82)
317 1z63_A Helicase of the SNF2/RA 25.7 23 0.00079 30.4 1.3 13 30-42 150-162 (500)
318 1e9r_A Conjugal transfer prote 25.5 37 0.0013 28.7 2.6 36 29-65 279-315 (437)
319 3l9o_A ATP-dependent RNA helic 25.3 55 0.0019 31.9 4.0 13 31-43 292-304 (1108)
320 3lua_A Response regulator rece 25.3 75 0.0026 21.3 3.8 74 29-115 50-127 (140)
321 1baz_A ARC repressor; transcri 25.1 57 0.002 19.6 2.7 29 103-131 16-44 (53)
322 4a2q_A RIG-I, retinoic acid in 25.1 53 0.0018 30.3 3.7 14 30-43 372-385 (797)
323 3dzd_A Transcriptional regulat 24.8 51 0.0017 27.6 3.3 73 30-115 45-118 (368)
324 3eod_A Protein HNR; response r 24.6 57 0.002 21.6 3.0 72 30-114 52-125 (130)
325 3crn_A Response regulator rece 24.6 1.2E+02 0.0041 20.1 4.8 73 30-114 48-120 (132)
326 3t8y_A CHEB, chemotaxis respon 24.5 1.2E+02 0.004 21.3 4.9 35 30-65 72-106 (164)
327 1jfi_A Transcription regulator 24.1 51 0.0018 22.5 2.6 47 119-169 29-75 (98)
328 2ly8_A Budding yeast chaperone 24.0 1.1E+02 0.0039 21.8 4.5 30 140-169 81-110 (121)
329 2byk_A Chrac-16; nucleosome sl 24.0 1.4E+02 0.0047 21.8 5.1 48 118-169 36-84 (140)
330 2pjz_A Hypothetical protein ST 23.9 1.3E+02 0.0046 23.8 5.5 36 30-66 147-183 (263)
331 3sxy_A Transcriptional regulat 23.9 79 0.0027 23.9 4.0 66 104-170 16-89 (218)
332 2d00_A V-type ATP synthase sub 23.6 1.8E+02 0.0063 20.0 5.9 33 31-65 48-80 (109)
333 3a1y_A 50S ribosomal protein P 23.5 1.3E+02 0.0046 18.4 5.3 39 99-141 16-54 (58)
334 2xau_A PRE-mRNA-splicing facto 23.4 81 0.0028 29.3 4.6 36 29-64 208-247 (773)
335 2vhj_A Ntpase P4, P4; non- hyd 23.3 1.8E+02 0.0062 24.3 6.4 11 32-42 185-195 (331)
336 3hzh_A Chemotaxis response reg 23.3 56 0.0019 22.7 2.9 70 30-112 84-154 (157)
337 2xgj_A ATP-dependent RNA helic 23.2 76 0.0026 30.6 4.5 13 30-42 193-205 (1010)
338 3cfy_A Putative LUXO repressor 23.1 1.4E+02 0.0047 20.0 4.9 72 30-113 49-120 (137)
339 1ny5_A Transcriptional regulat 22.8 80 0.0027 26.5 4.1 72 30-114 45-117 (387)
340 3cpe_A Terminase, DNA packagin 22.7 1E+02 0.0035 27.4 5.1 35 31-65 275-311 (592)
341 2nq2_C Hypothetical ABC transp 22.5 1E+02 0.0035 24.2 4.6 37 30-66 147-187 (253)
342 3crv_A XPD/RAD3 related DNA he 22.5 15 0.0005 32.6 -0.6 15 29-43 173-187 (551)
343 1id3_C Histone H2A.1; nucleoso 22.3 1.1E+02 0.0038 22.1 4.3 62 102-169 28-89 (131)
344 1tzy_C Histone H3; histone-fol 21.6 2.4E+02 0.0081 20.5 7.0 63 104-170 67-131 (136)
345 2i4i_A ATP-dependent RNA helic 21.6 22 0.00074 29.4 0.3 14 30-43 176-189 (417)
346 4a2w_A RIG-I, retinoic acid in 21.2 81 0.0028 29.9 4.2 14 30-43 372-385 (936)
347 2zj8_A DNA helicase, putative 20.8 82 0.0028 28.6 4.0 13 30-42 139-151 (720)
348 3ihu_A Transcriptional regulat 20.8 86 0.0029 23.8 3.7 66 103-169 19-92 (222)
349 1nla_A Transcriptional repress 20.7 60 0.0021 20.6 2.2 29 103-131 16-44 (64)
350 2vl7_A XPD; helicase, unknown 20.4 25 0.00085 31.1 0.4 14 29-42 175-188 (540)
351 1jbw_A Folylpolyglutamate synt 20.3 63 0.0021 27.5 3.0 33 31-65 308-342 (428)
352 2cvh_A DNA repair and recombin 20.3 1.6E+02 0.0054 21.5 5.0 12 30-41 106-117 (220)
353 2pcj_A ABC transporter, lipopr 20.2 1.3E+02 0.0045 23.0 4.7 37 30-66 159-198 (224)
No 1
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.96 E-value=6.9e-29 Score=221.40 Aligned_cols=183 Identities=70% Similarity=1.098 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCCh
Q psy18185 7 DKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPL 86 (190)
Q Consensus 7 ~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~ 86 (190)
..+|+++++.+.+|..++...+.++|+||||+|.|+.+++++|++++|+++.+++|++||.....+.++++..+|+.+|+
T Consensus 273 ~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~ 352 (456)
T 2c9o_A 273 DKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPL 352 (456)
T ss_dssp ----CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCH
T ss_pred HHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCCh
Confidence 35678899999999999998888899999999999999999999999999888888888654444444432335889999
Q ss_pred hHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 87 DLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 87 ~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
+++|||+.+.|+||+.+++.++|+.+++.+++.++++++.+++..+.+|++|.|+++|+.+..+|..+|+..||.++|++
T Consensus 353 ~i~sR~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~ 432 (456)
T 2c9o_A 353 DLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEE 432 (456)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred hHHhhcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999932899999999999999889888999999999999
Q ss_pred HHHhccChHHHHHHhHHhhhhhc
Q psy18185 167 VSTLFLDAKSSARILTENKDKFM 189 (190)
Q Consensus 167 ~~~~f~~~~~~~~~~~~~~~~~~ 189 (190)
++++|+|.+++++++..++..||
T Consensus 433 ~~~~~~d~~~~~~~~~~~~~~~~ 455 (456)
T 2c9o_A 433 ISELFYDAKSSAKILADQQDKYM 455 (456)
T ss_dssp HHHHSCCHHHHHHHHHC------
T ss_pred HHHHhcChHHHHHHHHHHHHhcc
Confidence 99999999999999999999987
No 2
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.92 E-value=1.1e-23 Score=180.74 Aligned_cols=183 Identities=46% Similarity=0.808 Sum_probs=150.7
Q ss_pred hhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCC
Q psy18185 6 SDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIP 85 (190)
Q Consensus 6 ~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~ 85 (190)
..++|+.+.+....+...++....++||||||+|.|+.+.++.|++++|++..+.++++++.....+.++ +..++..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t-~~~~~~~l~ 244 (368)
T 3uk6_A 166 KSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP 244 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTS-SCEEETTCC
T ss_pred HHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCCeeeeecccceeeeecc-CCCCcccCC
Confidence 5678888888887777776654456899999999999999999999999987788888886543333333 222477899
Q ss_pred hhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 86 LDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTR-STLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 86 ~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~-gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
++++|||..+.|+||+.+++.++|+.++..+++.++++++++|++. +. |++|.++++|+.+...|...+...||.++|
T Consensus 245 ~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~-~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v 323 (368)
T 3uk6_A 245 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRI-GLETSLRYAIQLITAASLVCRKRKGTEVQVDDI 323 (368)
T ss_dssp HHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999 46 999999999999998888888899999999
Q ss_pred HHHHHhccChHHHHHHhHHhhhhhcC
Q psy18185 165 LEVSTLFLDAKSSARILTENKDKFMR 190 (190)
Q Consensus 165 ~~~~~~f~~~~~~~~~~~~~~~~~~~ 190 (190)
++++..|.+..++.+.+..+++.||+
T Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~~~ 349 (368)
T 3uk6_A 324 KRVYSLFLDESRSTQYMKEYQDAFLF 349 (368)
T ss_dssp HHHHHHSBCHHHHHHHHC--------
T ss_pred HHHHHHhcCHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999985
No 3
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=5.1e-18 Score=144.99 Aligned_cols=127 Identities=21% Similarity=0.211 Sum_probs=111.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|++|||+|.|+.+++++|++++|+++. +.+|++|| .+..++++++|||+.+.|+|++.+++.+
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n-------------~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLAN-------------YAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEES-------------CGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEec-------------CccccchhHHhhceeEeccCCCHHHHHH
Confidence 368999999999999999999999999866 67888885 2668899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+|..+++.+++.+++++++.++.. ++||+|.|+++|+.+...+...|...||.++|.++++
T Consensus 177 ~l~~~~~~~~~~i~~~~~~~i~~~-s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 177 RIANVLVHEKLKLSPNAEKALIEL-SNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHHHHTTTCCBCHHHHHHHHHH-HTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 999999989999999999999999 6999999999998876554433445799999887664
No 4
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.72 E-value=5.8e-17 Score=138.43 Aligned_cols=131 Identities=14% Similarity=0.022 Sum_probs=111.0
Q ss_pred CCeEEEEecCCC-CCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 29 VPGVLFIDEVHM-LDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 29 ~~~Il~IDEi~~-L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
.++|++|||+|. ++++++++|++++|+|+. .++|++++. .+.......++++++|||+++.|.|++.+++.
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~-------~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK-------LSKAQENAAWFTALANRSVQVTCQTPEQAQLP 148 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC-------CCTTTTTSHHHHHHTTTCEEEEECCCCTTHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC-------CChhhHhhHHHHHHHhCceEEEeeCCCHHHHH
Confidence 358999999999 999999999999999876 567777731 11000135678899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
++|..+++++|+.++++++++++.. ++||+|.|.+.|+.+..++ +.+.||.++|..++..
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~-~~gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYC-YEGNLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHS-STTCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-hchHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 9999999999999999999999999 6999999999999998764 3447999999887754
No 5
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=9.6e-17 Score=136.05 Aligned_cols=128 Identities=18% Similarity=0.209 Sum_probs=112.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|+||||+|.++...++.|++++|+++. ..+|++|| .+..++++++|||..+.|+|++.+++..
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~-------------~~~~l~~~l~sR~~~i~~~~~~~~~~~~ 199 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICN-------------YVTRIIDPLASQCSKFRFKALDASNAID 199 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEES-------------CGGGSCHHHHHHSEEEECCCCCHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeC-------------chhhCcchhhccCceEEeCCCCHHHHHH
Confidence 357999999999999999999999999765 56777774 2567889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCC-cccHHHHHHHHHh
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT-AISKQDILEVSTL 170 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~-~It~~~V~~~~~~ 170 (190)
+|..++..+|+.++++++++|++. +.||+|.++++|+.+..++.+.+.. .||.++|++++..
T Consensus 200 ~l~~~~~~~~~~i~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 200 RLRFISEQENVKCDDGVLERILDI-SAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262 (353)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHH-TSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCC
Confidence 999999999999999999999999 6999999999999988776554433 7999999988754
No 6
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.71 E-value=4.9e-17 Score=139.20 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=99.1
Q ss_pred cchhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCC
Q psy18185 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPH 82 (190)
Q Consensus 4 ~~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~ 82 (190)
.+.+++| +++.. .........++|++|||+|.|+.+++++|++++|+|+. +.+|++|+ .+.
T Consensus 88 ~~i~~ir----~l~~~-~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~-------------~~~ 149 (334)
T 1a5t_A 88 LGVDAVR----EVTEK-LNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR-------------EPE 149 (334)
T ss_dssp BCHHHHH----HHHHH-TTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES-------------CGG
T ss_pred CCHHHHH----HHHHH-HhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeC-------------ChH
Confidence 3445666 33332 33333334579999999999999999999999999876 67888884 267
Q ss_pred CCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 83 GIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 83 ~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
.++++++|||+.+.|+|++++++.++|..++ .+++++++.++.. ++||+|.|+++++...
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~-s~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRL-SAGSPGAALALFQGDN 209 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHH-TTTCHHHHHHTTSSHH
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHH-cCCCHHHHHHHhccch
Confidence 8999999999999999999999999998764 6899999999999 6999999999997654
No 7
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.71 E-value=5.1e-17 Score=137.33 Aligned_cols=136 Identities=17% Similarity=0.169 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCccccCCeEEEEecCCCCC-HHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 14 NKVVNKYIDQGIAELVPGVLFIDEVHMLD-LETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 14 ~~~v~~~~~~~~~~~~~~Il~IDEi~~L~-~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
.+.+..+.........++|+||||+|.++ ++.++.|++++|+++. ..+|++|| ++..++++++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n-------------~~~~l~~~l~sR 156 (324)
T 3u61_B 90 RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN-------------NIDGIIKPLQSR 156 (324)
T ss_dssp HTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES-------------SGGGSCTTHHHH
T ss_pred HHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC-------------CccccCHHHHhh
Confidence 34444444433322346899999999999 9999999999998654 67888885 255788999999
Q ss_pred hhheeccCCCHHH-------HHHHHHHHHHhcCCCCCH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHH
Q psy18185 92 LLIIRTTPYNQKD-------MEAIIKLRANTEGHVLDD-EALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQD 163 (190)
Q Consensus 92 ~~~i~~~~ls~~e-------i~~iL~~~~~~~~~~i~~-e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~ 163 (190)
|.++.|++++.++ +...+...+..+|+.+++ ++++++++. ++||+|.|++.|+.++ +.+.||.++
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~gd~R~a~~~L~~~~------~~~~i~~~~ 229 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKK-NFPDFRKTIGELDSYS------SKGVLDAGI 229 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHH-TCSCTTHHHHHHHHHG------GGTCBCC--
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh-CCCCHHHHHHHHHHHh------ccCCCCHHH
Confidence 9999999999887 444566667778999998 999999999 7999999999999886 123588888
Q ss_pred HHHHHH
Q psy18185 164 ILEVST 169 (190)
Q Consensus 164 V~~~~~ 169 (190)
|+.+..
T Consensus 230 v~~~~~ 235 (324)
T 3u61_B 230 LSLVTN 235 (324)
T ss_dssp ------
T ss_pred HHHHhC
Confidence 877654
No 8
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.71 E-value=1e-16 Score=143.06 Aligned_cols=128 Identities=21% Similarity=0.296 Sum_probs=107.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
++||||||+|.+++..|+.|++.+|++ .+++|++| |+| +.+.++++++|||.++.|++++.+++..+|
T Consensus 107 ~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~at---------t~n--~~~~l~~aL~sR~~v~~l~~l~~edi~~il 174 (447)
T 3pvs_A 107 RTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGAT---------TEN--PSFELNSALLSRARVYLLKSLSTEDIEQVL 174 (447)
T ss_dssp CEEEEEETTTCC------CCHHHHHTT-SCEEEEEE---------SSC--GGGSSCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred CcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecC---------CCC--cccccCHHHhCceeEEeeCCcCHHHHHHHH
Confidence 589999999999999999999999995 47788888 444 356889999999999999999999999999
Q ss_pred HHHHHh-------cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhc--CCCcccHHHHHHHHHh
Q psy18185 110 KLRANT-------EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTN--GRTAISKQDILEVSTL 170 (190)
Q Consensus 110 ~~~~~~-------~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~--g~~~It~~~V~~~~~~ 170 (190)
...+.. .++.+++++++.|++. +.||+|.++++|+.+...+... |...||.++|.+++..
T Consensus 175 ~~~l~~~~~~~~~~~~~i~~~al~~L~~~-~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 175 TQAMEDKTRGYGGQDIVLPDETRRAIAEL-VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHCTTTSSTTSSEECCHHHHHHHHHH-HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 999876 6678999999999999 6999999999999999877533 5568999999998854
No 9
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.8e-16 Score=134.92 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=99.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|++|||+|.|+.++++.|++++|+++. ..+|++|| .+..++++++|||+.++|+|++.+++.+
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~-------------~~~~l~~~l~sR~~~~~~~~~~~~~~~~ 200 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD-------------SMSPIIAPIKSQCLLIRCPAPSDSEIST 200 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEES-------------CSCSSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeC-------------CHHHHHHHHHhhceEEecCCcCHHHHHH
Confidence 468999999999999999999999999755 67888885 2567899999999999999999999999
Q ss_pred HHHHHHHhcCCCCC-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy18185 108 IIKLRANTEGHVLD-DEALVTLSEIGTRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 108 iL~~~~~~~~~~i~-~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a 151 (190)
+|..+++++|+.++ +++++.|++. ++||+|.|+++|+.+...+
T Consensus 201 ~l~~~~~~~~~~~~~~~~l~~i~~~-~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 201 ILSDVVTNERIQLETKDILKRIAQA-SNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHHHTCEECCSHHHHHHHHH-HTTCHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhC
Confidence 99999999999999 9999999999 6999999999999887654
No 10
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=4.9e-16 Score=129.78 Aligned_cols=121 Identities=14% Similarity=0.188 Sum_probs=106.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
++|++|||+|.++.+.++.|++++|+++. +.+|++|| .+..++++++|||..+.|+|++.+++.++
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~-------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 174 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACN-------------QSNKIIEPLQSQCAILRYSKLSDEDVLKR 174 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEES-------------CGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeC-------------ChhhchhHHHhhceEEeecCCCHHHHHHH
Confidence 68999999999999999999999999765 56777774 25678899999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 109 IKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 109 L~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|..++..+|+.+++++++.+++. ++||+|.|++.|+.+.... +.||.++|..+++
T Consensus 175 l~~~~~~~~~~~~~~~~~~l~~~-~~G~~r~a~~~l~~~~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 175 LLQIIKLEDVKYTNDGLEAIIFT-AEGDMRQAINNLQSTVAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHTCCBCHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH-----SSBCHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC-----CCcCHHHHHHHHC
Confidence 99999989999999999999999 5999999999999876321 3689998887764
No 11
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=4.5e-16 Score=130.22 Aligned_cols=122 Identities=23% Similarity=0.344 Sum_probs=105.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|++|||+|.++.+.++.|++++|+++. +.+|++|| .+..++++++|||..+.|+|++.+++.+
T Consensus 110 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~-------------~~~~l~~~l~sr~~~~~~~~l~~~~~~~ 176 (327)
T 1iqp_A 110 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCN-------------YSSKIIEPIQSRCAIFRFRPLRDEDIAK 176 (327)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEES-------------CGGGSCHHHHHTEEEEECCCCCHHHHHH
T ss_pred CCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC-------------CccccCHHHHhhCcEEEecCCCHHHHHH
Confidence 468999999999999999999999999755 56777774 2557889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+|..++..+|+.++++++++++.. ++||+|.++++++.+... ...||.++|..+.+
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 177 RLRYIAENEGLELTEEGLQAILYI-AEGDMRRAINILQAAAAL-----DKKITDENVFMVAS 232 (327)
T ss_dssp HHHHHHHTTTCEECHHHHHHHHHH-HTTCHHHHHHHHHHHHTT-----CSEECHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 999999999999999999999999 699999999999987642 23588777776553
No 12
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.68 E-value=2.7e-16 Score=131.08 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=107.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|++|||+|.++.+.++.|++++|+++. +.+|++|| .+..++++++|||..+.|+|++.+++.+
T Consensus 102 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~-------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~ 168 (319)
T 2chq_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCN-------------YVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (319)
T ss_dssp CCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEES-------------CGGGSCHHHHTTCEEEECCCCCHHHHHH
T ss_pred CceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC-------------ChhhcchHHHhhCeEEEecCCCHHHHHH
Confidence 368999999999999999999999999765 56777774 2567889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+|..+++++|+.+++++++.++.. ++||+|.+++.|+.+... ...||.++|..+.+
T Consensus 169 ~l~~~~~~~~~~i~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 169 RLLEICEKEGVKITEDGLEALIYI-SGGDFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp HHHHHHHTTCCCBCHHHHHHHHHT-TTTCHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 999999999999999999999999 699999999999987642 24699888887664
No 13
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.67 E-value=9.3e-16 Score=130.88 Aligned_cols=124 Identities=24% Similarity=0.322 Sum_probs=108.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.++|++|||+|.|+.+.++.|++++|+++. +.+|++|+ .+..++++++|||..+.|+|++.+++.+
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~-------------~~~~l~~~l~sr~~~i~~~~l~~~~~~~ 185 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT-------------DPQKLPVTILSRCLQFHLKALDVEQIRH 185 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES-------------CGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC-------------ChHhCcHHHHhheeEeeCCCCCHHHHHH
Confidence 458999999999999999999999999765 56777774 2457889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+|..+++.+|+.+++++++.++.. ++|++|.+.++++.+...+ ...||.++|..+++.
T Consensus 186 ~l~~~~~~~~~~~~~~a~~~l~~~-~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 186 QLEHILNEEHIAHEPRALQLLARA-AEGSLRDALSLTDQAIASG----DGQVSTQAVSAMLGT 243 (373)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHH-SSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHhCC
Confidence 999999999999999999999999 6999999999999886543 347999999877643
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.65 E-value=5.2e-15 Score=115.87 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=107.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.+.+|+|||+|.++.+.++.|+++++.+.. ..+|++|| .+..+.+++++||..+.|+|++.+++.+
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~-------------~~~~~~~~l~~r~~~i~~~~~~~~~~~~ 168 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCN-------------YVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEES-------------CGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeC-------------ChhhcCHHHHHhCceeecCCCCHHHHHH
Confidence 358999999999999999999999998654 56777774 2456789999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 108 iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++..++...|+.+++++++.+++. +.|++|.+++.|+.+...+ +.||.++|+++++
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~l~~~-~~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 169 RLLEICEKEGVKITEDGLEALIYI-SGGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHH-HTTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 999999888999999999999999 6999999999999887654 4799999998875
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.64 E-value=1.9e-15 Score=119.42 Aligned_cols=122 Identities=25% Similarity=0.353 Sum_probs=106.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.+|+|||+|.++.+.++.|++.+++++. +.+|++|+ .+..+++++++||..+.|+|++.+++.++
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~-------------~~~~~~~~l~~r~~~i~l~~l~~~e~~~~ 193 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT-------------DPQKLPVTILSRCLQFHLKALDVEQIRHQ 193 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES-------------CGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC-------------ChHhCCHHHHHHhhhccCCCCCHHHHHHH
Confidence 57999999999999999999999998654 56777774 14567889999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 109 IKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 109 L~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+..++...+..+++++++.+++. +.|++|.+.++++.+... +.+.||.++|+++++
T Consensus 194 l~~~~~~~~~~~~~~~~~~l~~~-~~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 194 LEHILNEEHIAHEPRALQLLARA-AEGSLRDALSLTDQAIAS----GDGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHH-HTTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHSC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhc----cCceecHHHHHHHhC
Confidence 99999989999999999999999 599999999999988643 334899999998764
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.59 E-value=2.9e-14 Score=120.85 Aligned_cols=127 Identities=24% Similarity=0.263 Sum_probs=111.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-------------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-------------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-------------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.++|||||+|.+..+.++.|++.+++.. ...+|++|| .+..+++++++
T Consensus 107 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn-------------~~~~l~~~L~~ 173 (338)
T 3pfi_A 107 GDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT-------------RAGMLSNPLRD 173 (338)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES-------------CGGGSCHHHHT
T ss_pred CCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC-------------CccccCHHHHh
Confidence 5899999999999999999999999753 135777775 14458899999
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|| ..+.|++++.+++..++...+...++.+++++++.++.. +.|++|.+.++++.+..++...+...|+.+++..++.
T Consensus 174 R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~-~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 174 RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKR-SRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALN 252 (338)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHT-TTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 99 889999999999999999999999999999999999998 7999999999999998777777778899999988875
Q ss_pred h
Q psy18185 170 L 170 (190)
Q Consensus 170 ~ 170 (190)
.
T Consensus 253 ~ 253 (338)
T 3pfi_A 253 S 253 (338)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=7.1e-15 Score=125.11 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=89.6
Q ss_pred chhHHHHHHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCC
Q psy18185 5 KSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHG 83 (190)
Q Consensus 5 ~~~~~R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~ 83 (190)
+-+++| +++.. .........++|+||||+|.|+.+++|+|++++|+|+. ++||++|+ .|..
T Consensus 63 ~id~ir----~li~~-~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~-------------~~~k 124 (305)
T 2gno_A 63 GIDDIR----TIKDF-LNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR-------------RWHY 124 (305)
T ss_dssp CHHHHH----HHHHH-HTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES-------------CGGG
T ss_pred CHHHHH----HHHHH-HhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC-------------ChHh
Confidence 345566 33333 33333334579999999999999999999999999876 68888884 2678
Q ss_pred CChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy18185 84 IPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 146 (190)
Q Consensus 84 l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~ 146 (190)
++++++|| +++|+|++++++.++|..++ + ++++++ .. +.||+|.|+++++.
T Consensus 125 l~~tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~-~~g~~~~al~~l~~ 175 (305)
T 2gno_A 125 LLPTIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PL-LERDFKTALEAYKL 175 (305)
T ss_dssp SCHHHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHHC----GG-GGTCHHHHHHHHHH
T ss_pred ChHHHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HH-HCCCHHHHHHHHHH
Confidence 99999999 99999999999999999887 3 677776 44 58999999999864
No 18
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.56 E-value=9.7e-14 Score=118.66 Aligned_cols=128 Identities=23% Similarity=0.247 Sum_probs=110.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-------------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-------------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-------------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.+|+||||+|.+.+..++.|+..+|... ...++.+|+ .+..++++++|
T Consensus 103 ~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~-------------~~~~Ls~~l~s 169 (334)
T 1in4_A 103 GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT-------------RSGLLSSPLRS 169 (334)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES-------------CGGGSCHHHHT
T ss_pred CCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC-------------CcccCCHHHHH
Confidence 4799999999999989999988887542 124556563 26788999999
Q ss_pred hhh-heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RLL-IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~~-~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
||. .+.|.+++.+++.++|++.++..++.++++++.+|+.. ++||+|.|+++|+.+..+|...|...||.++|++++.
T Consensus 170 R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~-~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 170 RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKR-SRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 995 67999999999999999999889999999999999999 6999999999999998888877888999999999986
Q ss_pred hc
Q psy18185 170 LF 171 (190)
Q Consensus 170 ~f 171 (190)
..
T Consensus 249 ~~ 250 (334)
T 1in4_A 249 VL 250 (334)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.54 E-value=7.3e-14 Score=118.88 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=115.8
Q ss_pred CeEEEEecCCCCCHH--HHHHHHHHhhcc------CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hheeccC
Q psy18185 30 PGVLFIDEVHMLDLE--TFTYLHRALESA------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTP 99 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~--~~~~L~~~~E~~------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i~~~~ 99 (190)
+.||||||+|.+... .+..|..+++.. ....+|++|| . .+ ....+.+.++||| ..+.|+|
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~--------~-~~-~~~~l~~~l~~r~~~~~i~l~~ 200 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN--------S-LG-FVENLEPRVKSSLGEVELVFPP 200 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS--------C-ST-TSSSSCHHHHTTTTSEECCBCC
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC--------C-Cc-hHhhhCHHHHhcCCCeEEeeCC
Confidence 369999999999776 677777766532 2357888885 2 11 1256788999999 6799999
Q ss_pred CCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc-C
Q psy18185 100 YNQKDMEAIIKLRANT--EGHVLDDEALVTLSEIGTR---STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL-D 173 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~--~~~~i~~e~l~~i~~~a~~---gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~-~ 173 (190)
|+.+++.+++..++.. .+..+++++++.+++.+ . |++|.++++++.+...+...+...||.+++..++.... +
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALA-AREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHH-HSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 9999999999999875 56789999999999994 6 99999999999999888877888999999999885432 2
Q ss_pred h-HHHHHHhHHhhhhhc
Q psy18185 174 A-KSSARILTENKDKFM 189 (190)
Q Consensus 174 ~-~~~~~~~~~~~~~~~ 189 (190)
. ..+++.++..++.|+
T Consensus 280 ~~~~~~~~l~~~~~~~l 296 (387)
T 2v1u_A 280 RVSEVVRTLPLHAKLVL 296 (387)
T ss_dssp HHHHHHHSSCHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHH
Confidence 1 234566666666654
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.5e-15 Score=125.90 Aligned_cols=131 Identities=10% Similarity=0.067 Sum_probs=98.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc---C-CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hheeccCCCHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA---I-APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTPYNQK 103 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~---~-~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i~~~~ls~~ 103 (190)
..|++|||+|+|. .|+.|+.+++.+ . ...+|+++|. ++. +...+++.++||| ..+.|+||+.+
T Consensus 133 ~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~-------~d~--~~~~L~~~v~SR~~~~~i~F~pYt~~ 201 (318)
T 3te6_A 133 KTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGH-------NVT--IREQINIMPSLKAHFTEIKLNKVDKN 201 (318)
T ss_dssp EEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCS-------SCC--CHHHHHTCHHHHTTEEEEECCCCCHH
T ss_pred ceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecC-------ccc--chhhcchhhhccCCceEEEeCCCCHH
Confidence 4699999999998 678888887632 1 2467777762 221 1223456789998 57999999999
Q ss_pred HHHHHHHHHHHhc--C---------------------------------CCCCHHHHHHHHHhc--CCCCHHHHHHHHHH
Q psy18185 104 DMEAIIKLRANTE--G---------------------------------HVLDDEALVTLSEIG--TRSTLRYVVQLLTP 146 (190)
Q Consensus 104 ei~~iL~~~~~~~--~---------------------------------~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~ 146 (190)
|+.+||+.|++.. + +.+++++++++++.+ ++||+|.|+++|..
T Consensus 202 el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~ 281 (318)
T 3te6_A 202 ELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEA 281 (318)
T ss_dssp HHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHH
Confidence 9999999998752 2 147999999999952 48999999999999
Q ss_pred HHHHhhh---------cCCCcccHHHHHHHHHhc
Q psy18185 147 AALTAKT---------NGRTAISKQDILEVSTLF 171 (190)
Q Consensus 147 ~~~~a~~---------~g~~~It~~~V~~~~~~f 171 (190)
|...|++ .|...||.+.+.+++..+
T Consensus 282 A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 282 AVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp HHHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 9988865 233457877777776544
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.53 E-value=7.7e-14 Score=111.25 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=104.2
Q ss_pred CeEEEEecCCCCCHHH--HHHHHHHhhccC---CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCCC
Q psy18185 30 PGVLFIDEVHMLDLET--FTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~--~~~L~~~~E~~~---~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~ls 101 (190)
+++|+|||+|.+.... +..|+.+++... .+.+|++|+ . .+.....+.+++++|| ..+.|++++
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~--------~-~~~~~~~~~~~l~~r~~~~~~i~l~~~~ 175 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSAS--------A-SPMEAGFVLPDLVSRMHWGLTYQLQPMM 175 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEES--------S-CTTTTTCCCHHHHHHHHHSEEEECCCCC
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcC--------C-CHHHHHHhhhhhhhHhhcCceEEeCCCC
Confidence 4799999999997644 777777766432 234777774 2 1111124458999999 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.++..+++..+++..|+.+++++++++++. +.||+|.+.+.|+.+...+...+ ..||.++|++++.
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNR-MARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 999999999999989999999999999999 69999999999999998876545 4699999998875
No 22
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.53 E-value=1.7e-13 Score=114.99 Aligned_cols=127 Identities=25% Similarity=0.323 Sum_probs=110.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-------------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-------------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-------------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
.++|||||+|.++.+.++.|++++++.. ...+|++|| .+..+.+++++
T Consensus 91 ~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~-------------~~~~~~~~l~~ 157 (324)
T 1hqc_A 91 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT-------------RPGLITAPLLS 157 (324)
T ss_dssp TCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES-------------CCSSCSCSTTT
T ss_pred CCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC-------------CcccCCHHHHh
Confidence 5899999999999999999999999752 246777775 24567788999
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|| .++.|++++.+|+..++...+...++.+++++++.++.. +.|++|.+.++++.+...+...+...|+.+++..+..
T Consensus 158 R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 158 RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRR-SRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 236 (324)
T ss_dssp TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH-SCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99 689999999999999999999888999999999999999 6999999999999988777666677899999988775
Q ss_pred h
Q psy18185 170 L 170 (190)
Q Consensus 170 ~ 170 (190)
.
T Consensus 237 ~ 237 (324)
T 1hqc_A 237 A 237 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=7.3e-13 Score=113.11 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=118.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc-----CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--heeccCCCH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA-----IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--IIRTTPYNQ 102 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~-----~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--~i~~~~ls~ 102 (190)
+.||+|||+|.++.+.++.|.++++.. ....+|++||. .+ .+..+.+.++|||. .+.|+|++.
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~--------~~--~~~~l~~~~~~r~~~~~i~~~pl~~ 195 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN--------DA--VLNNLDPSTRGIMGKYVIRFSPYTK 195 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS--------TH--HHHTSCHHHHHHHTTCEEECCCCBH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC--------ch--HHHHhCHHhhhcCCCceEEeCCCCH
Confidence 469999999999999999999999863 24567777751 00 12457788999986 599999999
Q ss_pred HHHHHHHHHHHHh--cCCCCCHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 103 KDMEAIIKLRANT--EGHVLDDEALVTLSEIGT--------RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 103 ~ei~~iL~~~~~~--~~~~i~~e~l~~i~~~a~--------~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
+++.+++..++.. ....+++++++.+++.+. .|++|+++++++.+...+..++...||.++|..+.....
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 196 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 9999999999875 234799999999999932 799999999999999888877888999999998875432
Q ss_pred -C-hHHHHHHhHHhhhhhc
Q psy18185 173 -D-AKSSARILTENKDKFM 189 (190)
Q Consensus 173 -~-~~~~~~~~~~~~~~~~ 189 (190)
+ ....++.++.+++.++
T Consensus 276 ~~~~~~~l~~l~~~~~~~L 294 (389)
T 1fnn_A 276 FGISEEVLIGLPLHEKLFL 294 (389)
T ss_dssp CCCCHHHHHHSCHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHH
Confidence 2 2344666776666654
No 24
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=2.7e-13 Score=115.95 Aligned_cols=146 Identities=21% Similarity=0.197 Sum_probs=110.9
Q ss_pred eEEEEecCCCCCHH-HHHH-HHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh-hhheeccCCCHHHHHH
Q psy18185 31 GVLFIDEVHMLDLE-TFTY-LHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR-LLIIRTTPYNQKDMEA 107 (190)
Q Consensus 31 ~Il~IDEi~~L~~~-~~~~-L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR-~~~i~~~~ls~~ei~~ 107 (190)
.||||||+|.+... .++. +..+++......+|++|| . .+ ....+.+.++|| |..+.|+||+.+++.+
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~--------~-~~-~~~~l~~~l~sr~~~~i~l~~l~~~~~~~ 204 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISN--------D-IN-VRDYMEPRVLSSLGPSVIFKPYDAEQLKF 204 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECS--------S-TT-TTTTSCHHHHHTCCCEEEECCCCHHHHHH
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEEC--------C-Cc-hHhhhCHHHHhcCCCeEEECCCCHHHHHH
Confidence 39999999999754 2555 555555543466777775 1 11 125678899999 4789999999999999
Q ss_pred HHHHHHHh--cCCCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc-C-hHHHHHH
Q psy18185 108 IIKLRANT--EGHVLDDEALVTLSEIGTR---STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL-D-AKSSARI 180 (190)
Q Consensus 108 iL~~~~~~--~~~~i~~e~l~~i~~~a~~---gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~-~-~~~~~~~ 180 (190)
++..++.. .+..+++++++.+++.+ . ||+|.|+++|+.+...|. +...||.++|..++.... + ...+++.
T Consensus 205 il~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~~~~~~~~~ 281 (384)
T 2qby_B 205 ILSKYAEYGLIKGTYDDEILSYIAAIS-AKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQERLIEAVKA 281 (384)
T ss_dssp HHHHHHHHTSCTTSCCSHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhcccCCcCHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcchHHHHHHc
Confidence 99999875 45689999999999994 6 999999999999998876 667899999999885432 1 2234566
Q ss_pred hHHhhhhhc
Q psy18185 181 LTENKDKFM 189 (190)
Q Consensus 181 ~~~~~~~~~ 189 (190)
++..++.+|
T Consensus 282 l~~~~~~~l 290 (384)
T 2qby_B 282 LPFHYKLAL 290 (384)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 666666654
No 25
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.46 E-value=6.5e-13 Score=112.39 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=101.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC--------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhh-
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI- 94 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~--------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~- 94 (190)
.+++||||+|.++.+.++.|++++|++. ...+|+++| + ....+++++++||..
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n-----------~-~~~~l~~~L~~R~~~~ 212 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGN-----------P-EEGDLRPQLLDRFGLS 212 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEEC-----------S-CSCCCCHHHHTTCSEE
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeC-----------C-CCCCCCHHHHhhcceE
Confidence 5899999999999999999999999742 234555554 1 134788999999965
Q ss_pred eeccCCC-HHHHHHHHHHH-----------------------------HHhcCCCCCHHHHHHHHHhcCCC----CHHHH
Q psy18185 95 IRTTPYN-QKDMEAIIKLR-----------------------------ANTEGHVLDDEALVTLSEIGTRS----TLRYV 140 (190)
Q Consensus 95 i~~~~ls-~~ei~~iL~~~-----------------------------~~~~~~~i~~e~l~~i~~~a~~g----dlR~a 140 (190)
+.+++++ .++..+++..+ ....++.++++++++|++++ .+ ++|.+
T Consensus 213 ~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~-~~~~~~~~R~~ 291 (350)
T 1g8p_A 213 VEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC-IALGSDGLRGE 291 (350)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHH-HHSSSCSHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HHhCCCCccHH
Confidence 8999995 44444666542 23356789999999999994 43 79999
Q ss_pred HHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 141 VQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 141 i~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
+++++.+...|...|+..||.++|.+++...
T Consensus 292 ~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 292 LTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 9999999988887888889999999988754
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.43 E-value=1.1e-12 Score=116.42 Aligned_cols=132 Identities=17% Similarity=0.254 Sum_probs=106.7
Q ss_pred CeEEEEecCCCCCH--HHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCCCH
Q psy18185 30 PGVLFIDEVHMLDL--ETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPYNQ 102 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~ls~ 102 (190)
++||||||+|.+.. ..+..|+.+++.. .+..+|++|+. .+.....+.+.++||| .++.+++++.
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~---------~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR---------EPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS---------CGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC---------CHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 57999999999975 6777777776542 12456666641 1111223778999999 6899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
++..++|...+...|+.++++++++|+.. +.||+|.+.++|+.+..+|...|. .||.+++++++.-..
T Consensus 266 e~r~~iL~~~~~~~~~~i~~e~l~~la~~-~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 266 ETRKSIARKMLEIEHGELPEEVLNFVAEN-VDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHHHTCCCCTTHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 99999999999989999999999999999 699999999999999988876554 699999999886544
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.41 E-value=4.1e-13 Score=112.09 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=98.6
Q ss_pred CeEEEEecCCCC---------CHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheecc
Q psy18185 30 PGVLFIDEVHML---------DLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTT 98 (190)
Q Consensus 30 ~~Il~IDEi~~L---------~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~ 98 (190)
.+||||||+|.| +.+.++.|++.++++.. ..+|++|| .+.......+.|+++||| ..+.|+
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~--------~~~~~~~~~~~~~l~~R~~~~i~~~ 202 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY--------ADRMENFFQSNPGFRSRIAHHIEFP 202 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC--------HHHHHHHHHHSTTHHHHEEEEEEEC
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC--------hHHHHHHHhhCHHHHHhCCeEEEcC
Confidence 479999999988 78999999999998765 56777774 110001112357899999 899999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHhhh----cCCCcccHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI-------GTRSTLRYVVQLLTPAALTAKT----NGRTAISKQDIL 165 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~-------a~~gdlR~ai~lL~~~~~~a~~----~g~~~It~~~V~ 165 (190)
+++.+++..++...+.+.++.+++++++.++.+ ...|++|.+.++++.+...+.. .+...++.+++.
T Consensus 203 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 203 DYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 999999999999999999999999999999997 3458999999999988853221 133456665554
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=7.9e-13 Score=119.36 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=98.9
Q ss_pred CCeEEEEecCCCCCHH---HHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLE---TFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~---~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
.+.||||||+|.|..+ ..+.|+++++....| +|+++|. +. +. ..+++++||..+.|++++.+++
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~-iIli~~~-------~~----~~-~l~~l~~r~~~i~f~~~~~~~~ 214 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP-LILICNE-------RN----LP-KMRPFDRVCLDIQFRRPDANSI 214 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSC-EEEEESC-------TT----SS-TTGGGTTTSEEEECCCCCHHHH
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhcCCC-EEEEEcC-------CC----Cc-cchhhHhceEEEEeCCCCHHHH
Confidence 3579999999999764 448899999986555 5555541 21 22 3356999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 106 EAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 106 ~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.++|..++..+|+.++++++..|++. +.||+|.++++|+.++. +...||.++|++++.
T Consensus 215 ~~~L~~i~~~~~~~i~~~~l~~la~~-s~GdiR~~i~~L~~~~~-----~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 215 KSRLMTIAIREKFKLDPNVIDRLIQT-TRGDIRQVINLLSTIST-----TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHHHHHTCCCCTTHHHHHHHH-TTTCHHHHHHHHTHHHH-----HSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHh-----cCCCCchHHHHHHHH
Confidence 99999999999999999999999999 69999999999987753 334688888887764
No 29
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=2.5e-12 Score=109.12 Aligned_cols=131 Identities=19% Similarity=0.175 Sum_probs=103.7
Q ss_pred CeEEEEecCCCCC----HHHHHHHHHHhhc--cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hheeccCCC
Q psy18185 30 PGVLFIDEVHMLD----LETFTYLHRALES--AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~----~~~~~~L~~~~E~--~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i~~~~ls 101 (190)
+.||+|||+|.+. .+.+..|.+.++. .....+|++|+. .+ ....+.+.++||| ..+.|+|++
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~--------~~--~~~~~~~~~~~r~~~~~i~l~~l~ 198 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND--------VK--FVDLLDPRVKSSLSEEEIIFPPYN 198 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC--------GG--GGGGCTTHHHHTTTTEEEEECCCC
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC--------CC--hHhhhCHHHhccCCCeeEEeCCCC
Confidence 5799999999995 4677777777764 223567777751 10 1245677899999 679999999
Q ss_pred HHHHHHHHHHHHHh--cCCCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 102 QKDMEAIIKLRANT--EGHVLDDEALVTLSEIGTR---STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 102 ~~ei~~iL~~~~~~--~~~~i~~e~l~~i~~~a~~---gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
.+++.+++..++.. .+..++++++++++.. +. |++|.++++++.+...+...+...||.+++..++...
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 199 AEELEDILTKRAQMAFKPGVLPDNVIKLCAAL-AAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99999999998764 2357999999999999 46 9999999999999988887788899999999887543
No 30
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.37 E-value=2.4e-12 Score=106.81 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=99.2
Q ss_pred CeEEEEecCCCCCHHH------------HHHHHHHhhcc-----------CCCEEEEEecCCcccccCCCCCCCCCCCCh
Q psy18185 30 PGVLFIDEVHMLDLET------------FTYLHRALESA-----------IAPIVIFATNRGRCLVRGTDDIISPHGIPL 86 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~------------~~~L~~~~E~~-----------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~ 86 (190)
++||||||+|.+..+. ++.|++++|.. ....+|++++. +...+..+++
T Consensus 117 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~l~~ 187 (310)
T 1ofh_A 117 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF---------QVARPSDLIP 187 (310)
T ss_dssp HCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECC---------SSSCGGGSCH
T ss_pred CCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCc---------ccCCcccCCH
Confidence 3799999999997654 89999999974 13566666531 1113667889
Q ss_pred hHhhhhh-heeccCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHhcC-------CCCHHHHHHHHH
Q psy18185 87 DLLDRLL-IIRTTPYNQKDMEAIIKL-----------RANTEG--HVLDDEALVTLSEIGT-------RSTLRYVVQLLT 145 (190)
Q Consensus 87 ~l~SR~~-~i~~~~ls~~ei~~iL~~-----------~~~~~~--~~i~~e~l~~i~~~a~-------~gdlR~ai~lL~ 145 (190)
+++|||. .+.|++++.+++.++++. .+...+ +.++++++++|++.+. .||+|.+.++++
T Consensus 188 ~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~ 267 (310)
T 1ofh_A 188 ELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVME 267 (310)
T ss_dssp HHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHH
T ss_pred HHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHH
Confidence 9999995 699999999999999983 223344 4799999999999942 699999999999
Q ss_pred HHHHH-----hhhcCCC-cccHHHHHHHHHh
Q psy18185 146 PAALT-----AKTNGRT-AISKQDILEVSTL 170 (190)
Q Consensus 146 ~~~~~-----a~~~g~~-~It~~~V~~~~~~ 170 (190)
.+... +...|.. .||.++|++++.-
T Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 268 RLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 87632 2222332 4999999998753
No 31
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.36 E-value=2.5e-11 Score=102.67 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=104.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhcc-----------CCCEEEEEecCCcccccCCCCCCC---CCCCChhHhhhhh-he
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESA-----------IAPIVIFATNRGRCLVRGTDDIIS---PHGIPLDLLDRLL-II 95 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~-----------~~~~iIlatn~~~~~~~~t~~~~~---~~~l~~~l~SR~~-~i 95 (190)
+|+||||+|.++...++.|+..+|+. +.+.++++|+ |+.. .+.++++++|||. .+
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~----------np~~~~~~~~l~~~l~~Rf~~~i 180 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQ----------NPVEQEGTYPLPEAQVDRFMMKI 180 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEE----------CTTCCSCCCCCCHHHHTTSSEEE
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEec----------CCCcccCcccCCHHHHhheeEEE
Confidence 69999999999999999999999964 1223344442 2111 1238899999997 49
Q ss_pred eccCCCHHHHHHHHHHHHHh----------------------cCCCCCHHHHHHHHHhc----CCC--------------
Q psy18185 96 RTTPYNQKDMEAIIKLRANT----------------------EGHVLDDEALVTLSEIG----TRS-------------- 135 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~----------------------~~~~i~~e~l~~i~~~a----~~g-------------- 135 (190)
.+++++.++..++|+.++.. .++.+++++++++++.+ ..+
T Consensus 181 ~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~ 260 (331)
T 2r44_A 181 HLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYG 260 (331)
T ss_dssp ECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEEC
T ss_pred EcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccC
Confidence 99999999999999988754 27789999999998863 122
Q ss_pred -CHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 136 -TLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 136 -dlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
++|.++.++..+...|...|+..||.++|.+++..+
T Consensus 261 ~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 261 ASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 799999999999888888899999999999988654
No 32
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.33 E-value=1.1e-11 Score=104.76 Aligned_cols=132 Identities=18% Similarity=0.222 Sum_probs=100.3
Q ss_pred CeEEEEecCCCCCH--HHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh---hheeccCCCH
Q psy18185 30 PGVLFIDEVHMLDL--ETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL---LIIRTTPYNQ 102 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~---~~i~~~~ls~ 102 (190)
.++|||||+|.+.. ..+..++.+++.. .+..+|++++ .++.....+.++++||| .++.|+| +.
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~---------~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~ 168 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD---------RHPQKLDGVSDRLVSRFEGGILVEIEL-DN 168 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES---------SCGGGCTTSCHHHHHHHHTSEEEECCC-CH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec---------CChHHHHHhhhHhhhcccCceEEEeCC-CH
Confidence 47999999999975 5666666665431 1244666663 11111125789999999 7899999 99
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----hcCCCcc-cHHHHHHHHHhccC
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK----TNGRTAI-SKQDILEVSTLFLD 173 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~----~~g~~~I-t~~~V~~~~~~f~~ 173 (190)
++...++...+...++.++++++++|++. + ||+|.+.+.|+.+..... ..+...| |.++|.+++..+++
T Consensus 169 ~e~~~il~~~~~~~~~~l~~~~l~~l~~~-~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 169 KTRFKIIKEKLKEFNLELRKEVIDYLLEN-T-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHH-C-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHh-C-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999 6 999999999998876510 0123468 99999998866554
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.16 E-value=5e-10 Score=97.21 Aligned_cols=129 Identities=22% Similarity=0.237 Sum_probs=99.0
Q ss_pred CeEEEEecCCCC-----------CHHHHHHHHHHhhccCC-----CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh
Q psy18185 30 PGVLFIDEVHML-----------DLETFTYLHRALESAIA-----PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL 93 (190)
Q Consensus 30 ~~Il~IDEi~~L-----------~~~~~~~L~~~~E~~~~-----~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~ 93 (190)
++||||||+|.| ....++.|+..++.... +.+|++|| .+..+++++++||.
T Consensus 208 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn-------------~~~~l~~~l~~R~~ 274 (389)
T 3vfd_A 208 PSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN-------------RPQELDEAVLRRFI 274 (389)
T ss_dssp SEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEES-------------CGGGCCHHHHTTCC
T ss_pred CeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecC-------------CchhcCHHHHcCcc
Confidence 489999999988 44677788888874321 45566664 36788999999995
Q ss_pred -heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHhhhc------------CCCcc
Q psy18185 94 -IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLL-TPAALTAKTN------------GRTAI 159 (190)
Q Consensus 94 -~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL-~~~~~~a~~~------------g~~~I 159 (190)
.+.|++++.++...++...+...+..++++.+..|+.. +.|..+.+++.| ..+...+.++ +...|
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~-~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i 353 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARM-TDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNI 353 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHH-TTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCC
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCc
Confidence 78999999999999999999998999999999999999 588776666444 4444444433 33579
Q ss_pred cHHHHHHHHHhcc
Q psy18185 160 SKQDILEVSTLFL 172 (190)
Q Consensus 160 t~~~V~~~~~~f~ 172 (190)
+.+++..++....
T Consensus 354 ~~~d~~~al~~~~ 366 (389)
T 3vfd_A 354 RLSDFTESLKKIK 366 (389)
T ss_dssp CHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHcC
Confidence 9999998886543
No 34
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.12 E-value=8.9e-11 Score=97.77 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=89.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccc---cCCCC-CCC---------CCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLV---RGTDD-IIS---------PHGI 84 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~---~~t~~-~~~---------~~~l 84 (190)
.+|+||||+|.++.+.++.|++++|++. .+.+|++||.....+ .+... +.. ...+
T Consensus 120 ~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (311)
T 4fcw_A 120 YSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 199 (311)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHS
T ss_pred CeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999764 245788886310000 00000 000 2246
Q ss_pred ChhHhhhh-hheeccCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q psy18185 85 PLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEIGT--RSTLRYVVQLLTPAAL 149 (190)
Q Consensus 85 ~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~---------~~~~i~~e~l~~i~~~a~--~gdlR~ai~lL~~~~~ 149 (190)
+++|++|| .++.|.|++.+++..++...+.+ ..+.++++++++|++++. .|++|..-+.++.+..
T Consensus 200 ~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 200 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred CHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 78999999 78899999999999999886543 245799999999999865 5899998888887654
No 35
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.07 E-value=7.1e-10 Score=90.86 Aligned_cols=126 Identities=19% Similarity=0.241 Sum_probs=91.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc------------CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--he
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA------------IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--II 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~------------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--~i 95 (190)
.++|||||+|.++.+.|..|++++++. ..+.+|++||..... ......+.+++.+|+. .+
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~------~~~~~~~~~~L~~Rl~~~~i 174 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPA------MVNEGTFRADLLDALAFDVV 174 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHH------HHHHTSSCHHHHHHHCSEEE
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHH------HHHcCCccHHHHHhhcCcEE
Confidence 479999999999999999999999964 235788888620000 0001246789999984 57
Q ss_pred eccCCCH--HHHHHHHH----HHHHhcCC----CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 96 RTTPYNQ--KDMEAIIK----LRANTEGH----VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~----~~~~~~~~----~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
.++|+++ +++..++. ..+...+. .+++++++++..+.+.|++|...++++.+...+. ...||.+++
T Consensus 175 ~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 175 QLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp ECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred eCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 8999987 67766544 33444554 6899999999988668999999999999886653 235665544
No 36
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.07 E-value=1.3e-09 Score=100.17 Aligned_cols=130 Identities=21% Similarity=0.286 Sum_probs=101.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC----------------------CCEEEEEecCCcccccCCCCCCCCCCCChh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI----------------------APIVIFATNRGRCLVRGTDDIISPHGIPLD 87 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~----------------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~ 87 (190)
.++|||||+|.|++..|+.|++++|+.. .+.+|++||. + ....++++
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~---------~--~~~~l~~~ 270 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNL---------D--TVDKMHPA 270 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECH---------H--HHHHSCHH
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCH---------H--HHhhcCHH
Confidence 3699999999999999999999999431 1458888852 1 12468899
Q ss_pred Hhhhhh----heecc---CCCHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHhcC--CC-------CHHHHHHHHHH
Q psy18185 88 LLDRLL----IIRTT---PYNQKDMEAIIKLRANTE-----GHVLDDEALVTLSEIGT--RS-------TLRYVVQLLTP 146 (190)
Q Consensus 88 l~SR~~----~i~~~---~ls~~ei~~iL~~~~~~~-----~~~i~~e~l~~i~~~a~--~g-------dlR~ai~lL~~ 146 (190)
|++||. .+.|+ +.+.+.+..++...+... ...++++++..|++.+. .| ++|.+.+++..
T Consensus 271 l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~ 350 (604)
T 3k1j_A 271 LRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRA 350 (604)
T ss_dssp HHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHH
T ss_pred HHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHH
Confidence 999995 34443 446667777777665432 25799999999999742 44 59999999999
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 147 AALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 147 ~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+..+|...++..||.++|.+++..
T Consensus 351 A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 351 AGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhcCcccccHHHHHHHHHh
Confidence 998898889999999999999854
No 37
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.07 E-value=4.2e-09 Score=87.35 Aligned_cols=128 Identities=26% Similarity=0.265 Sum_probs=98.4
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhccCC------CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALESAIA------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~~~------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
++||||||+|.+. ...++.|+..++..+. +.+|++|| .|..+++++++||
T Consensus 114 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn-------------~~~~l~~~l~~R~ 180 (297)
T 3b9p_A 114 PSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN-------------RPQELDEAALRRF 180 (297)
T ss_dssp SEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEES-------------CGGGBCHHHHHHC
T ss_pred CcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecC-------------ChhhCCHHHHhhC
Confidence 5899999999883 4567778888886432 34556664 2667899999999
Q ss_pred -hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHhhhcC------------CCc
Q psy18185 93 -LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVV-QLLTPAALTAKTNG------------RTA 158 (190)
Q Consensus 93 -~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai-~lL~~~~~~a~~~g------------~~~ 158 (190)
..+.++.++.++...++...+...+..++++.++.++.. +.|..+..+ +++..+...+.++. ...
T Consensus 181 ~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~-~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~ 259 (297)
T 3b9p_A 181 TKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKI-TDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRA 259 (297)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHH-TTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCC
T ss_pred CeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCC
Confidence 578999999999999999999888888999999999999 577666555 56666665555432 247
Q ss_pred ccHHHHHHHHHhc
Q psy18185 159 ISKQDILEVSTLF 171 (190)
Q Consensus 159 It~~~V~~~~~~f 171 (190)
||.+++..++...
T Consensus 260 i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 260 ITEQDFHSSLKRI 272 (297)
T ss_dssp CCHHHHHHHTTSC
T ss_pred cCHHHHHHHHHHc
Confidence 9999999887654
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.06 E-value=1.8e-08 Score=86.67 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=85.2
Q ss_pred CeEEEEecCCCCCH-----------HHHHHHHHHhhcc----CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-h
Q psy18185 30 PGVLFIDEVHMLDL-----------ETFTYLHRALESA----IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-L 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~----~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~ 93 (190)
+.||||||+|.|.. ..++.|+..++.. ..+.+|++|| .|..+++++++|| .
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn-------------~~~~ld~al~rRf~~ 210 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN-------------IPWQLDSAIRRRFER 210 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEES-------------CGGGSCHHHHHTCCE
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecC-------------CcccCCHHHHcccCE
Confidence 58999999999963 3577788877632 2245566664 3678899999999 6
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhh
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAK 152 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~ 152 (190)
.+.+++++.++..++++..+...+..+++..++.|+.. +.| ..+..-+++..|...|.
T Consensus 211 ~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~-t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 211 RIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAM-TEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999888777899999999999 466 66666667776665443
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.05 E-value=3.3e-10 Score=103.03 Aligned_cols=127 Identities=18% Similarity=0.265 Sum_probs=92.3
Q ss_pred CeEEEEecCCCCCHH----HHHHHHHHhhccC----------------CCEEEEEecCCcccccCCCCCCCCCCCChhHh
Q psy18185 30 PGVLFIDEVHMLDLE----TFTYLHRALESAI----------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLL 89 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~----~~~~L~~~~E~~~----------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~ 89 (190)
.+|+||||+|.+..+ .++.|+++++... .+.+|++|| ++..++++|+
T Consensus 176 ~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN-------------~~~~l~~aL~ 242 (543)
T 3m6a_A 176 NPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN-------------NLATIPGPLR 242 (543)
T ss_dssp SEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS-------------STTTSCHHHH
T ss_pred CCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC-------------ccccCCHHHH
Confidence 469999999999876 5699999997431 245666664 3678999999
Q ss_pred hhhhheeccCCCHHHHHHHHHHHHH-----h-----cCCCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhh-----
Q psy18185 90 DRLLIIRTTPYNQKDMEAIIKLRAN-----T-----EGHVLDDEALVTLSEI-GTRSTLRYVVQLLTPAALTAKT----- 153 (190)
Q Consensus 90 SR~~~i~~~~ls~~ei~~iL~~~~~-----~-----~~~~i~~e~l~~i~~~-a~~gdlR~ai~lL~~~~~~a~~----- 153 (190)
+||.++.|++|+.++...+++.... . .++.++++++..++.. ...|++|..-+.++.+...+..
T Consensus 243 ~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~ 322 (543)
T 3m6a_A 243 DRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAE 322 (543)
T ss_dssp HHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987652 2 2557899999998874 3347888877777665543321
Q ss_pred -cCCCcccHHHHHHHHH
Q psy18185 154 -NGRTAISKQDILEVST 169 (190)
Q Consensus 154 -~g~~~It~~~V~~~~~ 169 (190)
.+...||.+++.++++
T Consensus 323 ~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 323 ERKRITVTEKNLQDFIG 339 (543)
T ss_dssp CCSCCEECTTTTHHHHC
T ss_pred CCcceecCHHHHHHHhC
Confidence 1344699999988874
No 40
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.04 E-value=4.5e-10 Score=96.81 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=93.4
Q ss_pred CeEEEEecCCCCCHH--------------HHHHHHHHhhcc----------------------CCCEEEEEecCCc--c-
Q psy18185 30 PGVLFIDEVHMLDLE--------------TFTYLHRALESA----------------------IAPIVIFATNRGR--C- 70 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~--------------~~~~L~~~~E~~----------------------~~~~iIlatn~~~--~- 70 (190)
.+|+||||+|.+... .++.|++++|.+ ..+.+|++||... .
T Consensus 138 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~ 217 (376)
T 1um8_A 138 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEI 217 (376)
T ss_dssp TSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHH
T ss_pred CeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHH
Confidence 589999999999887 999999999964 1135666664100 0
Q ss_pred ---cc----cCCCCCCC------------------CCCCChhHhhhh-hheeccCCCHHHHHHHHHH-----------HH
Q psy18185 71 ---LV----RGTDDIIS------------------PHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKL-----------RA 113 (190)
Q Consensus 71 ---~~----~~t~~~~~------------------~~~l~~~l~SR~-~~i~~~~ls~~ei~~iL~~-----------~~ 113 (190)
+. -|...... ...+.|+|++|| .++.|+|++.+++..++.. ..
T Consensus 218 l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~ 297 (376)
T 1um8_A 218 IKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLF 297 (376)
T ss_dssp TTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHH
Confidence 00 01000000 124678999999 7899999999999999962 11
Q ss_pred H--hcCCCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhh-----c-CCCcccHHHHHHHH
Q psy18185 114 N--TEGHVLDDEALVTLSEIGT--RSTLRYVVQLLTPAALTAKT-----N-GRTAISKQDILEVS 168 (190)
Q Consensus 114 ~--~~~~~i~~e~l~~i~~~a~--~gdlR~ai~lL~~~~~~a~~-----~-g~~~It~~~V~~~~ 168 (190)
. ..++.++++++++|++.+. .|++|.+.+.++.+...+.. . +...||.++|....
T Consensus 298 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 298 KMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred hhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 1 2356799999999999953 38999999999888753211 1 12258988887654
No 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.00 E-value=8.5e-09 Score=84.91 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=96.8
Q ss_pred CeEEEEecCCCC-----------CHHHHHHHHHHhhc-----cCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHML-----------DLETFTYLHRALES-----AIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L-----------~~~~~~~L~~~~E~-----~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+ +.+.+..|..+++. ... +.+|++|| .+..+++++++
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn-------------~~~~l~~~l~~~~ 177 (285)
T 3h4m_A 111 PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN-------------RPDILDPAILRPG 177 (285)
T ss_dssp SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS-------------CGGGBCHHHHSTT
T ss_pred CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC-------------CchhcCHHHcCCC
Confidence 479999999998 45666777776653 112 34555553 36778899998
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
|+ ..+.|++++.++..++++..+...++. ++..+..++..+.+...|..-+++..|...|..++...||.+++.+++.
T Consensus 178 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 178 RFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp SEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 77 578999999999999999888766543 2334777888843337778888888888888888888999999999986
Q ss_pred hcc
Q psy18185 170 LFL 172 (190)
Q Consensus 170 ~f~ 172 (190)
-+.
T Consensus 257 ~~~ 259 (285)
T 3h4m_A 257 KIM 259 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.00 E-value=6.5e-09 Score=88.00 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=83.8
Q ss_pred CeEEEEecCCCCCH-----------HHHHHHHHHhhcc---CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-h
Q psy18185 30 PGVLFIDEVHMLDL-----------ETFTYLHRALESA---IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-L 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~---~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~ 93 (190)
++||||||+|.|.. ..++.|+..++.. .. +.+|++|| .|..+++++++|| .
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn-------------~~~~ld~al~~Rf~~ 177 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN-------------IPWQLDSAIRRRFER 177 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES-------------CGGGSCHHHHHHCCE
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecC-------------ChhhCCHHHHcccCe
Confidence 58999999999853 4567788887743 22 45555664 3678999999999 5
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTA 151 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a 151 (190)
.+.+++++.++..++++..+...+..++++.+..|++.+ .| +.+..-+++..|...+
T Consensus 178 ~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t-~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 178 RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMT-EGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTT-TTCCHHHHHHHHHHHTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999998888888999999999994 55 6666666666665444
No 43
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.00 E-value=3.7e-09 Score=85.68 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=83.0
Q ss_pred CeEEEEecCCCCC------------HHHHHHHHHHhh---c--c-CCCEEEEEecCCcccccCCCCCCCCCCCChhHhh-
Q psy18185 30 PGVLFIDEVHMLD------------LETFTYLHRALE---S--A-IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~------------~~~~~~L~~~~E---~--~-~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S- 90 (190)
+.||||||+|.+. .+.+..++.+++ . + ..+.+|++|| .+..+++++++
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn-------------~~~~ld~~l~~~ 165 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTN-------------RADILDGALMRP 165 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEES-------------CGGGGGSGGGST
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCC-------------ChhhcCHHHhcC
Confidence 5899999999993 333444444444 3 1 1245555564 25567788888
Q ss_pred -hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCCC-CHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 91 -RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 91 -R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
|+ ..+.|++++.++..++++..+...++..+++. ...++.. +.| ..+..-+++..+...|..++...||.+++..
T Consensus 166 ~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~ 244 (262)
T 2qz4_A 166 GRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAEL-TPGFSGADIANICNEAALHAAREGHTSVHTLNFEY 244 (262)
T ss_dssp TSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHT-CTTCCHHHHHHHHHHHHTC--------CCBCCHHH
T ss_pred CcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 88 67899999999999999999988888877764 5788888 455 5567778888888777777778899888888
Q ss_pred HHH
Q psy18185 167 VST 169 (190)
Q Consensus 167 ~~~ 169 (190)
++.
T Consensus 245 a~~ 247 (262)
T 2qz4_A 245 AVE 247 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 44
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.99 E-value=1.3e-09 Score=100.17 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=100.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC--------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LI 94 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~--------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~ 94 (190)
.+|+||||+|.++++.++.|+.++|++. ...+|.|||...-...++........++++++||| .+
T Consensus 392 ~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~ 471 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLI 471 (595)
T ss_dssp SSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCC
T ss_pred CCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEE
Confidence 3899999999999999999999999643 13477777632000000000000016889999999 67
Q ss_pred eeccCCCHHHHHHHHHHHHHhc-------------------------CCCCCHHHHHHHHHh--------------cCCC
Q psy18185 95 IRTTPYNQKDMEAIIKLRANTE-------------------------GHVLDDEALVTLSEI--------------GTRS 135 (190)
Q Consensus 95 i~~~~ls~~ei~~iL~~~~~~~-------------------------~~~i~~e~l~~i~~~--------------a~~g 135 (190)
+.+.++.+++-..+++...... ...+++++.++|.+. ...+
T Consensus 472 ~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~ 551 (595)
T 3f9v_A 472 FILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILI 551 (595)
T ss_dssp EEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCS
T ss_pred EEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence 7777777766333333222211 226778888888887 2367
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccCh
Q psy18185 136 TLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDA 174 (190)
Q Consensus 136 dlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~~ 174 (190)
++|.+..++..+..+|...++..||.++|.+++.++...
T Consensus 552 s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 552 TPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp STTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 999999999999888988899999999999999876543
No 45
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.95 E-value=6.4e-09 Score=87.84 Aligned_cols=126 Identities=20% Similarity=0.202 Sum_probs=91.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--he
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--II 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--~i 95 (190)
.++|||||+|.|+.+.|..|++++++.. .+.+|++||.... .......+.+++.+|+. .+
T Consensus 97 ~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~------~~v~~g~fr~~L~~Rl~~~~i 170 (304)
T 1ojl_A 97 GGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA------EEVSAGRFRQDLYYRLNVVAI 170 (304)
T ss_dssp TSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH------HHHHHTSSCHHHHHHHSSEEE
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH------HHHHhCCcHHHHHhhcCeeEE
Confidence 3799999999999999999999999753 2578888862100 00001245678999974 46
Q ss_pred eccCCC--HHHHHHHHHHHHH----hc---CCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHH
Q psy18185 96 RTTPYN--QKDMEAIIKLRAN----TE---GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDI 164 (190)
Q Consensus 96 ~~~~ls--~~ei~~iL~~~~~----~~---~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V 164 (190)
.++|+. .+|+..++....+ .. ...+++++++.+..+.+.|++|...++++.+...+. ...|+.+++
T Consensus 171 ~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l 245 (304)
T 1ojl_A 171 EMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLT---GEYISEREL 245 (304)
T ss_dssp ECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGS
T ss_pred eccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhh
Confidence 799998 5777766664433 22 357999999999999668999999999999987653 234554444
No 46
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.95 E-value=1.8e-08 Score=86.63 Aligned_cols=128 Identities=22% Similarity=0.193 Sum_probs=95.8
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhccC-----CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALESAI-----APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~~-----~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~ 93 (190)
++||||||+|.|. ...++.|+..++... ...+|++|| .+..+++++++||.
T Consensus 177 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn-------------~~~~l~~~l~~Rf~ 243 (357)
T 3d8b_A 177 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN-------------RPQEIDEAARRRLV 243 (357)
T ss_dssp SEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES-------------CGGGBCHHHHTTCC
T ss_pred CeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC-------------ChhhCCHHHHhhCc
Confidence 5899999998883 246677788877421 245566664 26678899999995
Q ss_pred -heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhhc------------CCCcc
Q psy18185 94 -IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAKTN------------GRTAI 159 (190)
Q Consensus 94 -~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~------------g~~~I 159 (190)
.+.++.++.++..+++...++..++.++++.++.|++. +.| +.+..-.++..+...+.++ ....|
T Consensus 244 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~-t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i 322 (357)
T 3d8b_A 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQ-SDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPI 322 (357)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHH-TTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCB
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCc
Confidence 78999999999999999999888888999999999999 466 5565556666665444331 23579
Q ss_pred cHHHHHHHHHhc
Q psy18185 160 SKQDILEVSTLF 171 (190)
Q Consensus 160 t~~~V~~~~~~f 171 (190)
+.+++..++.-+
T Consensus 323 ~~~d~~~al~~~ 334 (357)
T 3d8b_A 323 AYIDFENAFRTV 334 (357)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 999999888543
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.93 E-value=2.3e-09 Score=100.31 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=87.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCC-CCCCCC-----------CCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGT-DDIISP-----------HGIP 85 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t-~~~~~~-----------~~l~ 85 (190)
++||||||+|.++++.++.|++++|++. .+.+|++||.....+... -+.... ..++
T Consensus 558 ~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 637 (758)
T 1r6b_X 558 HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSC
T ss_pred CcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcC
Confidence 5899999999999999999999999752 245888886321000000 000000 1467
Q ss_pred hhHhhhh-hheeccCCCHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q psy18185 86 LDLLDRL-LIIRTTPYNQKDMEAIIKLRANT-------E--GHVLDDEALVTLSEIGT--RSTLRYVVQLLTPAAL 149 (190)
Q Consensus 86 ~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~-------~--~~~i~~e~l~~i~~~a~--~gdlR~ai~lL~~~~~ 149 (190)
|+|++|| .++.|+|++.+++..++...+++ . .+.++++++++|++.+. ++++|.+.++++.+..
T Consensus 638 ~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 8999999 78999999999999999988753 1 35789999999999853 4458888888877653
No 48
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.91 E-value=9.7e-08 Score=81.09 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=82.9
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhcc----CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-h
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALESA----IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-L 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~----~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~ 93 (190)
+.||||||+|.+. ....+.|+..++.. ..+.+|++|| .|..+++++++|| .
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn-------------~~~~ld~al~rRf~~ 172 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN-------------IPWVLDSAIRRRFEK 172 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEES-------------CTTTSCHHHHHTCCE
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecC-------------CcccCCHHHHhhcCe
Confidence 5799999999992 24566777777642 2245566664 3778999999999 6
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTA 151 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a 151 (190)
.+.+++++.++..++++..+...+..+++..+..|++.+ .| +.+..-.++..|...|
T Consensus 173 ~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t-~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 173 RIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKT-DGYSGADISIIVRDALMQP 230 (322)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTC-TTCCHHHHHHHHHHHHTHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999988877778999999999994 55 5666666666665443
No 49
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.89 E-value=6e-09 Score=97.77 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=84.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCC-----------CCh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHG-----------IPL 86 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~-----------l~~ 86 (190)
++||||||+|.++++.++.|++++|++. .+.+|++||. ++.. ++|
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~------------~~~~~~~~~~~~~~~f~p 647 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV------------GASEKDKVMGELKRAFRP 647 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS------------STTCCHHHHHHHHHHSCH
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC------------ChhhHHHHHHHHHhhCCH
Confidence 4799999999999999999999999843 2478888862 1221 789
Q ss_pred hHhhhh-hheeccCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q psy18185 87 DLLDRL-LIIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEIG--TRSTLRYVVQLLTPAA 148 (190)
Q Consensus 87 ~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~---------~~~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~~~ 148 (190)
+|++|| .++.|+|++.+++.+++...+.. .++.++++++++|++.+ ..|++|..-+.++.+.
T Consensus 648 ~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 648 EFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp HHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred HHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 999999 89999999999999999887654 25679999999998853 4577887777776554
No 50
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.82 E-value=1.5e-08 Score=86.97 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=94.3
Q ss_pred CeEEEEecCCCCC------HHHHHHHHHHhhccC-----C-CEEEEEecCCcccccCCCCCCCCCCCC---hhHhhhh-h
Q psy18185 30 PGVLFIDEVHMLD------LETFTYLHRALESAI-----A-PIVIFATNRGRCLVRGTDDIISPHGIP---LDLLDRL-L 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~------~~~~~~L~~~~E~~~-----~-~~iIlatn~~~~~~~~t~~~~~~~~l~---~~l~SR~-~ 93 (190)
+.||+|||+|.+. .+.+..|.+.++..+ . ..+|++|+ ..+ ....+. +.+.+|+ .
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~--------~~~--~~~~l~~~~~~~~~~~~~ 208 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVAS--------DVR--ALSYMREKIPQVESQIGF 208 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEE--------ETH--HHHHHHHHCHHHHTTCSE
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEec--------ccc--HHHHHhhhcchhhhhcCC
Confidence 3589999999985 367777777776532 3 45666663 100 000122 3455554 3
Q ss_pred heeccCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhhhcCCCcccHHHHH
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTE--GHVLDDEALVTLSEIGTR------STLRYVVQLLTPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~--~~~i~~e~l~~i~~~a~~------gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~ 165 (190)
.+.|+|++.+++.+++..++... +..++++++..++.. +. |++|.+++++..+...+...+...++.+++.
T Consensus 209 ~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 209 KLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV-YGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH-HCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH-HHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 39999999999999999887642 235899999999999 57 9999999999988877777777789999988
Q ss_pred HHHHh
Q psy18185 166 EVSTL 170 (190)
Q Consensus 166 ~~~~~ 170 (190)
.++..
T Consensus 288 ~~~~~ 292 (412)
T 1w5s_A 288 KAVSE 292 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.81 E-value=3.1e-08 Score=80.64 Aligned_cols=125 Identities=22% Similarity=0.262 Sum_probs=94.1
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhcc---CCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALESA---IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~---~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.++||||+|.+.. ..++.++..++.. ....+|.+|| .|..+++.+++
T Consensus 105 ~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn-------------~~~~l~~~l~r~~ 171 (257)
T 1lv7_A 105 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN-------------RPDVLDPALLRPG 171 (257)
T ss_dssp SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEES-------------CTTTSCGGGGSTT
T ss_pred CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeC-------------CchhCCHHHcCCC
Confidence 47999999987742 3456666666642 2245566664 36778888887
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCCC-CHHHHHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~ 167 (190)
|+ ..+.+++++.++..++++..++..+ +++++ +..++.. +.| +.|...+++..|...|...+...||.+++.++
T Consensus 172 rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~-~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a 248 (257)
T 1lv7_A 172 RFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARG-TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKA 248 (257)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 65 5688999999999999988776543 44443 6677777 688 99999999999998888888889999999998
Q ss_pred HHh
Q psy18185 168 STL 170 (190)
Q Consensus 168 ~~~ 170 (190)
+..
T Consensus 249 ~~~ 251 (257)
T 1lv7_A 249 KDK 251 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 853
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.79 E-value=4.2e-08 Score=86.94 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=86.0
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHHhhcc----CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-h
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRALESA----IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-L 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~----~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~ 93 (190)
++||||||+|.|. ...++.|+..++.. ..+.+|++|| .|..+++++++|| .
T Consensus 228 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn-------------~~~~ld~al~rRf~~ 294 (444)
T 2zan_A 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN-------------IPWVLDSAIRRRFEK 294 (444)
T ss_dssp SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES-------------CGGGSCHHHHTTCCE
T ss_pred CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCC-------------CccccCHHHHhhcce
Confidence 5899999999992 35777888888752 2256777775 3678999999999 5
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhh
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAK 152 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~ 152 (190)
.+.+++++.++...+++..+...+..+++..+..|+.. +.| +.+..-+++..|...+.
T Consensus 295 ~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~-t~G~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 295 RIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRK-TDGYSGADISIIVRDALMQPV 353 (444)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHH-TTTCCHHHHHHHHHHHHTHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999998887777899999999999 466 66666667777665443
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.79 E-value=1e-08 Score=97.50 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=89.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccC-CCCCC------------CCCCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRG-TDDII------------SPHGI 84 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~-t~~~~------------~~~~l 84 (190)
++||||||+|.++.+.++.|++++|++. .+++|++||.....+.+ +.+.. ....+
T Consensus 661 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f 740 (854)
T 1qvr_A 661 YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 740 (854)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred CeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhC
Confidence 4899999999999999999999999763 24588888632100000 00000 02346
Q ss_pred ChhHhhhh-hheeccCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q psy18185 85 PLDLLDRL-LIIRTTPYNQKDMEAIIKLRANT---------EGHVLDDEALVTLSEIGT--RSTLRYVVQLLTPAAL 149 (190)
Q Consensus 85 ~~~l~SR~-~~i~~~~ls~~ei~~iL~~~~~~---------~~~~i~~e~l~~i~~~a~--~gdlR~ai~lL~~~~~ 149 (190)
.|+|++|| .++.|.|++.+++..++...++. ..+.++++++++|++++. .|++|..-++++.+..
T Consensus 741 ~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp CHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred CHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 78999999 78899999999999999877652 135799999999999865 5899998888887653
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.79 E-value=3.9e-08 Score=92.00 Aligned_cols=133 Identities=19% Similarity=0.208 Sum_probs=100.0
Q ss_pred CeEEEEecCCCC---------CHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCC
Q psy18185 30 PGVLFIDEVHML---------DLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L---------~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~l 100 (190)
.+||||||+|.| ..+.++.|..+++.+ ...+|++|+ .+.......+++++++||..+.|+++
T Consensus 279 ~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~-~~~~I~at~--------~~~~~~~~~~d~aL~~Rf~~i~v~~p 349 (758)
T 1r6b_X 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTT--------YQEFSNIFEKDRALARRFQKIDITEP 349 (758)
T ss_dssp CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC-CCEEEEEEC--------HHHHHCCCCCTTSSGGGEEEEECCCC
T ss_pred CeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC-CeEEEEEeC--------chHHhhhhhcCHHHHhCceEEEcCCC
Confidence 489999999999 356778888888875 467788884 11111133456789999999999999
Q ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhh----cCCCcccHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANT----EGHVLDDEALVTLSEIG-----TRSTLRYVVQLLTPAALTAKT----NGRTAISKQDILEV 167 (190)
Q Consensus 101 s~~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a-----~~gdlR~ai~lL~~~~~~a~~----~g~~~It~~~V~~~ 167 (190)
+.++..++|+..+.. .++.++++++..++..+ ....+..++++++.+...+.. .+...|+.+++..+
T Consensus 350 ~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~ 429 (758)
T 1r6b_X 350 SIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESV 429 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHH
Confidence 999999999987754 68889999999999883 123456899999888755433 24557999999988
Q ss_pred HHhc
Q psy18185 168 STLF 171 (190)
Q Consensus 168 ~~~f 171 (190)
+..+
T Consensus 430 ~~~~ 433 (758)
T 1r6b_X 430 VARI 433 (758)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7543
No 55
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.75 E-value=1.4e-08 Score=83.42 Aligned_cols=103 Identities=14% Similarity=0.196 Sum_probs=75.8
Q ss_pred CeEEEEecCCCC----------CHHHHHHHHHHhhcc---CCCE-EEEEecCCcccccCCCCCCCCCCCCh-hHhhh-hh
Q psy18185 30 PGVLFIDEVHML----------DLETFTYLHRALESA---IAPI-VIFATNRGRCLVRGTDDIISPHGIPL-DLLDR-LL 93 (190)
Q Consensus 30 ~~Il~IDEi~~L----------~~~~~~~L~~~~E~~---~~~~-iIlatn~~~~~~~~t~~~~~~~~l~~-~l~SR-~~ 93 (190)
+++|||||+|.| ....++.|...++.. ...+ +|.+|| .+..+++ .+++| |.
T Consensus 125 ~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn-------------~~~~l~~~~l~~rf~~ 191 (272)
T 1d2n_A 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS-------------RKDVLQEMEMLNAFST 191 (272)
T ss_dssp EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES-------------CHHHHHHTTCTTTSSE
T ss_pred CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecC-------------Chhhcchhhhhcccce
Confidence 489999999997 567788888888752 2233 444553 1333444 57888 57
Q ss_pred heeccCCCH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHh
Q psy18185 94 IIRTTPYNQ-KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-----TLRYVVQLLTPAALTA 151 (190)
Q Consensus 94 ~i~~~~ls~-~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-----dlR~ai~lL~~~~~~a 151 (190)
.+.++++++ +++..++... + .++++++..+++. +.| ++|.++++++.+...+
T Consensus 192 ~i~~p~l~~r~~i~~i~~~~----~-~~~~~~~~~l~~~-~~g~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 192 TIHVPNIATGEQLLEALELL----G-NFKDKERTTIAQQ-VKGKKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp EEECCCEEEHHHHHHHHHHH----T-CSCHHHHHHHHHH-HTTSEEEECHHHHHHHHHHHTTSC
T ss_pred EEcCCCccHHHHHHHHHHhc----C-CCCHHHHHHHHHH-hcCCCccccHHHHHHHHHHHhhhc
Confidence 899999998 7777777542 2 5789999999999 466 9999999999986543
No 56
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.73 E-value=6.9e-08 Score=87.17 Aligned_cols=126 Identities=15% Similarity=0.216 Sum_probs=95.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC-----------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-heec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI-----------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRT 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~-----------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-~i~~ 97 (190)
.+|+||||++.+++..++.|+.++|+.. .+.+|++||. ........+++++|+. .+.+
T Consensus 110 ~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~----------lpe~~~~~~aLldRF~~~i~v 179 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNE----------LPEADSSLEALYDRMLIRLWL 179 (500)
T ss_dssp CSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESS----------CCCTTCTTHHHHTTCCEEEEC
T ss_pred ceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcccc----------CCCccccHHHHHHHHHHHHHH
Confidence 4689999999999999999999998532 1345777751 1012234568999974 4788
Q ss_pred cCCCH-HHHHHHHHHHH-----------------------HhcCCCCCHHHHHHHHHhc---------CCCCHHHHHHHH
Q psy18185 98 TPYNQ-KDMEAIIKLRA-----------------------NTEGHVLDDEALVTLSEIG---------TRSTLRYVVQLL 144 (190)
Q Consensus 98 ~~ls~-~ei~~iL~~~~-----------------------~~~~~~i~~e~l~~i~~~a---------~~gdlR~ai~lL 144 (190)
+++++ ++...++..+. ...++.+++++++++++.. ...+.|.++.++
T Consensus 180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~ll 259 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAI 259 (500)
T ss_dssp CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHH
Confidence 88887 56677776543 1237789999999999873 134889999999
Q ss_pred HHHHHHhhhcCCCcccHHHHH
Q psy18185 145 TPAALTAKTNGRTAISKQDIL 165 (190)
Q Consensus 145 ~~~~~~a~~~g~~~It~~~V~ 165 (190)
..+...|...|+..||.++|.
T Consensus 260 r~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 260 RLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHhhcCCccccchHHH
Confidence 988888888999999999998
No 57
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=7.3e-07 Score=78.56 Aligned_cols=126 Identities=20% Similarity=0.211 Sum_probs=93.0
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhccC--C-CEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALESAI--A-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~--~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+.. ...+.|+..++.-. . +.+|+||| .|..++|+++.
T Consensus 242 P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN-------------rpd~LDpAllRpG 308 (405)
T 4b4t_J 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN-------------RLDILDPALLRPG 308 (405)
T ss_dssp SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES-------------CSSSSCHHHHSTT
T ss_pred CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC-------------ChhhCCHhHcCCC
Confidence 57999999999942 23455666665322 2 45666775 38889999987
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
|+ ..|.|+.++.++..++++..+++.++ +++ -++.|++.+.+-+-...-+++..|+..|.++++..||.+++..++
T Consensus 309 RfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al 386 (405)
T 4b4t_J 309 RIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAV 386 (405)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred cCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 66 67999999999999999988766543 222 278888884333666667778888888888888899999998887
Q ss_pred Hh
Q psy18185 169 TL 170 (190)
Q Consensus 169 ~~ 170 (190)
.-
T Consensus 387 ~~ 388 (405)
T 4b4t_J 387 GK 388 (405)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 58
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.67 E-value=5.1e-08 Score=84.50 Aligned_cols=116 Identities=28% Similarity=0.271 Sum_probs=87.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhh--e
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI--I 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~--i 95 (190)
.|.|||||||.|+.+.|..|++++|++. .+.+|.+||..... ......+.++|..|+.+ +
T Consensus 223 ~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~------~v~~g~fr~dL~~rl~~~~i 296 (368)
T 3dzd_A 223 QGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEE------EIKKGNFREDLYYRLSVFQI 296 (368)
T ss_dssp TSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHH------HHHTTSSCHHHHHHHTSEEE
T ss_pred CCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHH------HHHcCCccHHHHHHhCCeEE
Confidence 3799999999999999999999999742 14588888631000 00123456789999865 5
Q ss_pred eccCCCH--HHHHHHHHHHHH----hcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy18185 96 RTTPYNQ--KDMEAIIKLRAN----TEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~~----~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a 151 (190)
.++|+.+ +|+..++..-.+ ..+ ..+++++++.+..+.+.|++|...|.++.+...+
T Consensus 297 ~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 297 YLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp ECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred eCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 6999998 787766555443 233 4599999999999977999999999999998654
No 59
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.64 E-value=1.7e-07 Score=76.14 Aligned_cols=125 Identities=28% Similarity=0.370 Sum_probs=89.8
Q ss_pred CCeEEEEecCCCCCH--------------HHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 29 VPGVLFIDEVHMLDL--------------ETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
.+.++++||+|.+.. ..++.++..++.... +.+++++ ++ .|..+++++++|+
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~---------t~---~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA---------TN---RPDILDPALLRPG 175 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEE---------ES---CGGGSCGGGGSTT
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEc---------cC---CchhCCHHHcCCC
Confidence 357999999987731 234455555554322 4455555 32 3677889999854
Q ss_pred ---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCCCC-HHHHHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy18185 93 ---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRST-LRYVVQLLTPAALTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 93 ---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a~~gd-lR~ai~lL~~~~~~a~~~g~~~It~~~V~~~ 167 (190)
..+.+++++.++..++++..++ +..+++++ +..++.. +.|. .|...+++..+...|...+...||.+++.++
T Consensus 176 rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~-~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a 252 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 4689999999999999987764 34555554 7888888 5664 4888889998888887777788999999886
Q ss_pred H
Q psy18185 168 S 168 (190)
Q Consensus 168 ~ 168 (190)
+
T Consensus 253 ~ 253 (254)
T 1ixz_A 253 A 253 (254)
T ss_dssp T
T ss_pred h
Confidence 4
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.63 E-value=2e-07 Score=83.70 Aligned_cols=126 Identities=25% Similarity=0.351 Sum_probs=93.7
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhc---cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~---~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+.. ..++.|+..++. ..++++|++|| .|..+++.+++
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn-------------~~~~Ld~allR~g 175 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN-------------RPDILDPALLRPG 175 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES-------------CGGGSCGGGGSTT
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC-------------ChhhhchhhcccC
Confidence 58999999999843 356677777763 22245666664 25667788776
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCCCCH-HHHHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRSTL-RYVVQLLTPAALTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a~~gdl-R~ai~lL~~~~~~a~~~g~~~It~~~V~~~ 167 (190)
|+ ..+.+++++.++..++++..++..+ +.+++ +..++.. +.|.. |..-+++..+...|.+.+...||.+++.++
T Consensus 176 RFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~-t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~a 252 (476)
T 2ce7_A 176 RFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKR-TPGFVGADLENLVNEAALLAAREGRDKITMKDFEEA 252 (476)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 66 3789999999999999988876543 33443 7778888 57755 788889999988887778889999999998
Q ss_pred HHhc
Q psy18185 168 STLF 171 (190)
Q Consensus 168 ~~~f 171 (190)
+.-.
T Consensus 253 l~~v 256 (476)
T 2ce7_A 253 IDRV 256 (476)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8543
No 61
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.63 E-value=1.2e-06 Score=78.69 Aligned_cols=144 Identities=17% Similarity=0.068 Sum_probs=99.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC----------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheec-
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI----------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRT- 97 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~----------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~- 97 (190)
.|++||||++.+.+..|.+|+.+||+.. ...+|.++|... .-.....+ .-..+|++++||+ +++-+
T Consensus 301 gGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFDLi~i~~ 378 (506)
T 3f8t_A 301 GGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFDLIAFLG 378 (506)
T ss_dssp TSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCSEEEETT
T ss_pred CCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc-ccCCCCCc-cccCCChHHhhheeeEEEec
Confidence 4899999999999999999999999742 245666665311 00000000 0126889999998 43322
Q ss_pred -------------cCCCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHhc-----------------CCCCHHHHHHHHHH
Q psy18185 98 -------------TPYNQKDMEAIIKLRA-NTEGHVLDDEALVTLSEIG-----------------TRSTLRYVVQLLTP 146 (190)
Q Consensus 98 -------------~~ls~~ei~~iL~~~~-~~~~~~i~~e~l~~i~~~a-----------------~~gdlR~ai~lL~~ 146 (190)
+.++.+++...+...- ..-.+.+++++.++|.+.. ..-++|....++..
T Consensus 379 d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl 458 (506)
T 3f8t_A 379 VDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERL 458 (506)
T ss_dssp C--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH
T ss_pred CCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHH
Confidence 2355566666666443 2336789999999888651 12377988888888
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHhccChH
Q psy18185 147 AALTAKTNGRTAISKQDILEVSTLFLDAK 175 (190)
Q Consensus 147 ~~~~a~~~g~~~It~~~V~~~~~~f~~~~ 175 (190)
+..+|.-.++..++.+||++++.++....
T Consensus 459 A~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 459 AKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 88899999999999999999998875544
No 62
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.6e-06 Score=75.76 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=93.3
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhccCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
+.||||||+|.+.. ...+.|+..++.... +.+|+||| .|..++|++++|.
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN-------------rp~~LDpAllRpG 341 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN-------------RPDTLDPALLRPG 341 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES-------------STTSSCTTTTSTT
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC-------------CchhhCHHHhCCC
Confidence 57999999999831 235566666664322 57777886 2788999998774
Q ss_pred ---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 93 ---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 93 ---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
..|.|+.++.++..++++..+.+..+. ++--+..|++.+.+-+....-+++..|+..|.+++...||.+++..++.
T Consensus 342 RfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~ 420 (437)
T 4b4t_L 342 RLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVR 420 (437)
T ss_dssp SEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 478999999999999999888765432 1112678888842336666667788888888888888999999988875
Q ss_pred h
Q psy18185 170 L 170 (190)
Q Consensus 170 ~ 170 (190)
-
T Consensus 421 ~ 421 (437)
T 4b4t_L 421 K 421 (437)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.60 E-value=3.6e-07 Score=75.38 Aligned_cols=124 Identities=27% Similarity=0.359 Sum_probs=87.5
Q ss_pred CeEEEEecCCCCC-----------HHHHHHHHHH---hhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-
Q psy18185 30 PGVLFIDEVHMLD-----------LETFTYLHRA---LESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL- 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~~~~~L~~~---~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~- 92 (190)
+.++++||+|.+. .+....+..+ ++.+.. +.+++++ ++ .|..+++++++|+
T Consensus 133 ~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~---------t~---~p~~ld~~l~r~~r 200 (278)
T 1iy2_A 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA---------TN---RPDILDPALLRPGR 200 (278)
T ss_dssp SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEE---------ES---CTTSSCHHHHSTTS
T ss_pred CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEe---------cC---CchhCCHhHcCCCc
Confidence 5799999998762 1223333333 333222 3455544 22 3677899998854
Q ss_pred --hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCCCCH-HHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 93 --LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRSTL-RYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 93 --~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a~~gdl-R~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
..+.|++++.++..++|+..++. ..+++++ +..++.. +.|.. |..-+++..+...|...+...||.+++.+++
T Consensus 201 f~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~-~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 201 FDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 46899999999999999877643 4555554 7888888 57755 7777888888888877777889999998874
No 64
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.59 E-value=3.6e-07 Score=81.42 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=91.4
Q ss_pred eEEEEecCCCCCH------------HHHHHHHHHhhcc-----------CCCEEEEEecCCcccccCCCCCCCCCCCChh
Q psy18185 31 GVLFIDEVHMLDL------------ETFTYLHRALESA-----------IAPIVIFATNRGRCLVRGTDDIISPHGIPLD 87 (190)
Q Consensus 31 ~Il~IDEi~~L~~------------~~~~~L~~~~E~~-----------~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~ 87 (190)
+++++||+|.+.. ..|++|++++|.. ....||.++.. - .. .|..+.|+
T Consensus 252 ~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf---~---~~---~~~dlipe 322 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF---Q---VA---RPSDLIPE 322 (444)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECC---S---SC---CGGGSCHH
T ss_pred CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccc---c---cC---ChhhcchH
Confidence 7999999999953 3789999999952 12456655521 0 11 24446688
Q ss_pred Hhhhhhh-eeccCCCHHHHHHHHH---------HH--HHhc--CCCCCHHHHHHHHHhc-------CCCCHHHHHHHHHH
Q psy18185 88 LLDRLLI-IRTTPYNQKDMEAIIK---------LR--ANTE--GHVLDDEALVTLSEIG-------TRSTLRYVVQLLTP 146 (190)
Q Consensus 88 l~SR~~~-i~~~~ls~~ei~~iL~---------~~--~~~~--~~~i~~e~l~~i~~~a-------~~gdlR~ai~lL~~ 146 (190)
|++|+-+ +.|++||.+|+..|+. +. ...+ .+.++++++..|++.| .++++|..-+.++.
T Consensus 323 l~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~ 402 (444)
T 1g41_A 323 LQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMER 402 (444)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHH
T ss_pred HhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHH
Confidence 9999966 8999999999999994 11 1123 4469999999999963 25778887777776
Q ss_pred HHHH----hhh-cCC-CcccHHHHHHHHHhccC
Q psy18185 147 AALT----AKT-NGR-TAISKQDILEVSTLFLD 173 (190)
Q Consensus 147 ~~~~----a~~-~g~-~~It~~~V~~~~~~f~~ 173 (190)
+..- ... .+. -.||.+.|.+.++-...
T Consensus 403 ~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 403 LMDKISFSASDMNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp HHHHHHHHGGGCTTCEEEECHHHHHHHHTTTTT
T ss_pred HHHHHHhhccccCCCeEEEeHHHHHHhcCcccc
Confidence 5532 111 111 24899999887754433
No 65
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.8e-06 Score=76.68 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=91.2
Q ss_pred CeEEEEecCCCCCH-----------H---HHHHHHHHhhccC---CCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDL-----------E---TFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----------~---~~~~L~~~~E~~~---~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+.. . .++.|+..++... .+.+|+||| .|..++++++.
T Consensus 276 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN-------------rpd~LDpALlRpG 342 (437)
T 4b4t_I 276 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN-------------KIETLDPALIRPG 342 (437)
T ss_dssp SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES-------------CSTTCCTTSSCTT
T ss_pred CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC-------------ChhhcCHHHhcCC
Confidence 57999999999832 2 3444555554322 245666775 37889999987
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
|+ ..|.|+.++.++..++++..+++.. ++++ -++.|++.+.+-+-...-+++..|+..|.++++..||.+++..++
T Consensus 343 RfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 343 RIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp TEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred ceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 66 5689999999999999998886644 3333 277888884333666667778888888888888899999998887
Q ss_pred H
Q psy18185 169 T 169 (190)
Q Consensus 169 ~ 169 (190)
.
T Consensus 421 ~ 421 (437)
T 4b4t_I 421 E 421 (437)
T ss_dssp H
T ss_pred H
Confidence 5
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.57 E-value=6.2e-09 Score=85.11 Aligned_cols=125 Identities=22% Similarity=0.300 Sum_probs=89.6
Q ss_pred CeEEEEecCCCCCHH---------------HHHHHHHHhhccCC----CEEEEEecCCcccccCCCCCCCCCCCChhHhh
Q psy18185 30 PGVLFIDEVHMLDLE---------------TFTYLHRALESAIA----PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~---------------~~~~L~~~~E~~~~----~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S 90 (190)
++||||||+|.|... .++.|+..++.... ..+|++|| .+..+++++++
T Consensus 104 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn-------------~~~~ld~~l~r 170 (268)
T 2r62_A 104 PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN-------------RPEILDPALMR 170 (268)
T ss_dssp SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBS-------------CCTTSCGGGGS
T ss_pred CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecC-------------CchhcCHhHcC
Confidence 479999999999643 35567777765322 34555553 36678888888
Q ss_pred --hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 91 --RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 91 --R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
|+ ..+.|++++.++..++|+..++..++. ++..+..++.. +.| ..|...+++..+...|...+...||.+++.+
T Consensus 171 ~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~-~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~ 248 (268)
T 2r62_A 171 PGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKL-TAGLAGADLANIINEAALLAGRNNQKEVRQQHLKE 248 (268)
T ss_dssp SSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSS-SCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHT
T ss_pred CCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 54 578999999999999998887654332 22236667777 354 5678888899988888777778899999987
Q ss_pred HHH
Q psy18185 167 VST 169 (190)
Q Consensus 167 ~~~ 169 (190)
++.
T Consensus 249 a~~ 251 (268)
T 2r62_A 249 AVE 251 (268)
T ss_dssp SCT
T ss_pred HHH
Confidence 764
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.55 E-value=3.1e-07 Score=81.85 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=78.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
++||||| .+.++++.|+++++.+ ...+|++|| .+.+.....+++++++||..+.|++++.++...+|
T Consensus 268 ~~iLfiD----~~~~a~~~L~~~L~~g-~v~vI~at~--------~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL 334 (468)
T 3pxg_A 268 NIILFID----AAIDASNILKPSLARG-ELQCIGATT--------LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQIL 334 (468)
T ss_dssp CCEEEEC----C--------CCCTTSS-SCEEEEECC--------TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHH
T ss_pred CeEEEEe----CchhHHHHHHHhhcCC-CEEEEecCC--------HHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHH
Confidence 4799999 5668999999999975 467888885 11000002478899999999999999999999999
Q ss_pred HHHHHh----cCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhh
Q psy18185 110 KLRANT----EGHVLDDEALVTLSEIG-----TRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 110 ~~~~~~----~~~~i~~e~l~~i~~~a-----~~gdlR~ai~lL~~~~~~a~ 152 (190)
+..+.. .++.++++++.+++.++ .+.-.++|+++|+.+...+.
T Consensus 335 ~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~ 386 (468)
T 3pxg_A 335 QGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVR 386 (468)
T ss_dssp HHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHH
Confidence 987765 78899999999999983 12236789999998875443
No 68
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=3.5e-06 Score=75.37 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=90.2
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhccCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+.. ..++.|+..++.... +.+|+||| .|..++++++.
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN-------------rpd~LDpALlRpG 369 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN-------------RPNTLDPALLRPG 369 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS-------------CTTSBCHHHHSTT
T ss_pred CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC-------------CcccCChhhhccc
Confidence 57999999999832 234445555553222 35566665 38889999987
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
|+ ..|.|+.++.++..++++..+++..+ +++ -++.|++.+.+-+....-+++..|+..|.++++..||.+++..++
T Consensus 370 RFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al 447 (467)
T 4b4t_H 370 RIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAV 447 (467)
T ss_dssp TCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred cccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 77 57899999999999999988866433 222 267788884333566666778888888888888899999988877
Q ss_pred H
Q psy18185 169 T 169 (190)
Q Consensus 169 ~ 169 (190)
.
T Consensus 448 ~ 448 (467)
T 4b4t_H 448 D 448 (467)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.53 E-value=8.5e-08 Score=91.21 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=78.1
Q ss_pred CeEEEEecCCCCC--------HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCC
Q psy18185 30 PGVLFIDEVHMLD--------LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~--------~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls 101 (190)
+.||||||+|.|. .++++.|..+++.+ ...+|++|| .+... ...+.+++++||..+.|++++
T Consensus 264 ~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~-~i~~I~at~--------~~~~~-~~~~d~aL~rRf~~i~l~~p~ 333 (854)
T 1qvr_A 264 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG-ELRLIGATT--------LDEYR-EIEKDPALERRFQPVYVDEPT 333 (854)
T ss_dssp SEEEEECCC-------------------HHHHHTT-CCCEEEEEC--------HHHHH-HHTTCTTTCSCCCCEEECCCC
T ss_pred CeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC-CeEEEEecC--------chHHh-hhccCHHHHhCCceEEeCCCC
Confidence 4799999999996 56788899999875 356777774 11000 024578899999999999999
Q ss_pred HHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhh
Q psy18185 102 QKDMEAIIKLRAN----TEGHVLDDEALVTLSEIG-----TRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 102 ~~ei~~iL~~~~~----~~~~~i~~e~l~~i~~~a-----~~gdlR~ai~lL~~~~~~a~ 152 (190)
.++...+|+..+. ..++.++++++..++..+ .+.-.+.|+.+++.+...+.
T Consensus 334 ~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 334 VEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHH
Confidence 9999999986655 358899999999999983 12337899999998875443
No 70
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=2.4e-06 Score=75.85 Aligned_cols=127 Identities=22% Similarity=0.266 Sum_probs=92.7
Q ss_pred CeEEEEecCCCCC-----------HH---HHHHHHHHhhccCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLD-----------LE---TFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~-----------~~---~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+. .. .++.|+..++...+ +.+|+||| .|..++|++++
T Consensus 275 P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN-------------rp~~LD~AllRpG 341 (434)
T 4b4t_M 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN-------------RVDVLDPALLRSG 341 (434)
T ss_dssp SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS-------------SCCCCCTTTCSTT
T ss_pred CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC-------------CchhcCHhHhcCC
Confidence 5799999999882 12 34556666654322 46666775 28889999977
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
|+ ..|.|+.++.++..++++..+++..+ ++++ ++.|++.+.+-+....-+++..|+..|.+++...||.++..+++
T Consensus 342 RfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al 419 (434)
T 4b4t_M 342 RLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGI 419 (434)
T ss_dssp SEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred ceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 66 57899999999999999988876543 2222 67788884233666666778888888888889999999998888
Q ss_pred Hhc
Q psy18185 169 TLF 171 (190)
Q Consensus 169 ~~f 171 (190)
.-.
T Consensus 420 ~~v 422 (434)
T 4b4t_M 420 SEV 422 (434)
T ss_dssp HSC
T ss_pred HHH
Confidence 643
No 71
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.48 E-value=1.2e-06 Score=78.66 Aligned_cols=126 Identities=20% Similarity=0.205 Sum_probs=89.4
Q ss_pred CeEEEEecCCCCCH-----------HHHHHHHHHhhccCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh-
Q psy18185 30 PGVLFIDEVHMLDL-----------ETFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL- 92 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~- 92 (190)
+++|||||+|.|.. ..++.|++.++.... +.+|.+|| .|..+++++++ |+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn-------------~~~~Ld~al~r~gRf~ 364 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN-------------RPNSIDPALRRFGRFD 364 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEES-------------CGGGBCGGGGSTTSSC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecC-------------CccccCHHHhCCCcCc
Confidence 47999999987743 688999999985322 45666664 25678899999 44
Q ss_pred hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhhcCCC--------------
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS-TLRYVVQLLTPAALTAKTNGRT-------------- 157 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g-dlR~ai~lL~~~~~~a~~~g~~-------------- 157 (190)
..+.|++++.++..++|+.+++..++.. +..+..++..+ .| ..+..-.++..+...+.+++..
T Consensus 365 ~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~t-~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~ 442 (489)
T 3hu3_A 365 REVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (489)
T ss_dssp EEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHc-cCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhc
Confidence 3689999999999999998887655432 22467778874 54 5666666677777777654432
Q ss_pred ---cccHHHHHHHHHh
Q psy18185 158 ---AISKQDILEVSTL 170 (190)
Q Consensus 158 ---~It~~~V~~~~~~ 170 (190)
.||.+++..++..
T Consensus 443 ~~~~vt~edf~~Al~~ 458 (489)
T 3hu3_A 443 NSLAVTMDDFRWALSQ 458 (489)
T ss_dssp HHCCBCHHHHHHHHTS
T ss_pred ccCcCCHHHHHHHHHh
Confidence 3777777777653
No 72
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.43 E-value=2.1e-06 Score=71.83 Aligned_cols=128 Identities=21% Similarity=0.215 Sum_probs=84.6
Q ss_pred CeEEEEecCCCCCHH--------------HHHHHHHHhhccC---CCEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDLE--------------TFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~--------------~~~~L~~~~E~~~---~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.|+||||+|.|... .++.|++.++.-. .+.+|++|| .|..+++++++
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn-------------~~~~ld~al~r~g 175 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN-------------RPDIIDPAILRPG 175 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES-------------CGGGSCGGGGSTT
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC-------------CccccChHHhcCC
Confidence 589999999988543 4677888887421 245666665 26678888888
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhc---------------
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTN--------------- 154 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~--------------- 154 (190)
|+ ..+.+++++.++..++++..+++.++. .+-.++.++..+.+-+.+..-++++.|...|..+
T Consensus 176 Rf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~ 254 (301)
T 3cf0_A 176 RLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTN 254 (301)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 77 578999999999999999888766542 1222456666632223445555555555433211
Q ss_pred ----------CCCcccHHHHHHHHHhc
Q psy18185 155 ----------GRTAISKQDILEVSTLF 171 (190)
Q Consensus 155 ----------g~~~It~~~V~~~~~~f 171 (190)
....|+.+++..++...
T Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 255 PSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp -----------CCCBCHHHHHHHHTTC
T ss_pred cccccccccccCCccCHHHHHHHHHHc
Confidence 01358888888888654
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=7.8e-06 Score=72.44 Aligned_cols=126 Identities=23% Similarity=0.244 Sum_probs=90.8
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhccC--C-CEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALESAI--A-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~--~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.|+||||+|.+.. ...+.|+..++.-. . +.+|+||| .|..++|+++.
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN-------------~~~~LD~AllRpG 332 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN-------------RADTLDPALLRPG 332 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES-------------CSSSCCHHHHSSS
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC-------------ChhhcChhhhcCC
Confidence 57999999997721 24566666666422 2 45666665 37889999987
Q ss_pred hh-hheecc-CCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy18185 91 RL-LIIRTT-PYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 91 R~-~~i~~~-~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~ 167 (190)
|+ ..|.|+ +++.++...+++..+.+.++ +++ -++.|+..+.+-+....-+++..|+..|.++++..||.+++.++
T Consensus 333 Rfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A 410 (428)
T 4b4t_K 333 RLDRKIEFPSLRDRRERRLIFGTIASKMSL--APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEA 410 (428)
T ss_dssp SEEEEEECCSSCCHHHHHHHHHHHHHSSCB--CTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 55 468896 67888889999888766543 333 27888888433366666777888888888888889999999988
Q ss_pred HHh
Q psy18185 168 STL 170 (190)
Q Consensus 168 ~~~ 170 (190)
+..
T Consensus 411 ~~~ 413 (428)
T 4b4t_K 411 YAT 413 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 74
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.41 E-value=9e-07 Score=77.02 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=92.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh--he
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL--II 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~--~i 95 (190)
.|+|||||++.|+.+.|..|++++|++. .+.+|.+||...... .....+.+++..|.. .+
T Consensus 232 ~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~------~~~g~fr~dl~~rl~~~~i 305 (387)
T 1ny5_A 232 GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKEL------VKEGKFREDLYYRLGVIEI 305 (387)
T ss_dssp TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHH------HHTTSSCHHHHHHHTTEEE
T ss_pred CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHH------HHcCCccHHHHHhhcCCee
Confidence 4799999999999999999999999632 246888886311000 012345577888864 46
Q ss_pred eccCCCH--HHHHHHHHHHH----HhcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHH
Q psy18185 96 RTTPYNQ--KDMEAIIKLRA----NTEG---HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166 (190)
Q Consensus 96 ~~~~ls~--~ei~~iL~~~~----~~~~---~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~ 166 (190)
.++|+.+ +|+..+...-. .+.+ ..+++++++.+..+.+.|++|..-|.++.+...+. ...|+.+++..
T Consensus 306 ~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~---~~~i~~~~l~~ 382 (387)
T 1ny5_A 306 EIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE---GKFIDRGELSC 382 (387)
T ss_dssp ECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC---SSEECHHHHHH
T ss_pred cCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC---CCcCcHHHCcH
Confidence 7888876 67765555433 3333 24899999999999889999999999999987653 24788887753
No 75
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.40 E-value=3.2e-07 Score=78.53 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=59.2
Q ss_pred CChhHhhhhhh-eeccCCCHHHHHHHHHH----HH-------H--hcCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q psy18185 84 IPLDLLDRLLI-IRTTPYNQKDMEAIIKL----RA-------N--TEGHVLDDEALVTLSEIG--TRSTLRYVVQLLTPA 147 (190)
Q Consensus 84 l~~~l~SR~~~-i~~~~ls~~ei~~iL~~----~~-------~--~~~~~i~~e~l~~i~~~a--~~gdlR~ai~lL~~~ 147 (190)
+.|+|.+|+-. +.|.|++.+++.+++.. .. . ...+.++++++++|++.+ .++++|..-+.++.+
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 67899999954 56999999999999875 21 1 123468999999999753 467788888888777
Q ss_pred HHHh--hhcCC-C----cccHHHHHHHH
Q psy18185 148 ALTA--KTNGR-T----AISKQDILEVS 168 (190)
Q Consensus 148 ~~~a--~~~g~-~----~It~~~V~~~~ 168 (190)
..-+ +.... . .||.+.|++..
T Consensus 319 ~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 319 LLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred HHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 6432 22121 1 47777776544
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.40 E-value=6.8e-07 Score=80.69 Aligned_cols=127 Identities=28% Similarity=0.378 Sum_probs=91.6
Q ss_pred CCeEEEEecCCCCCH--------------HHHHHHHHHhhccC--CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh
Q psy18185 29 VPGVLFIDEVHMLDL--------------ETFTYLHRALESAI--APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~--~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~ 92 (190)
.+.++||||+|.+.. ..++.|+..++... ...+++++ |+ .|..+++++++++
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa---------tn---~p~~LD~aLlr~g 190 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA---------TN---RPDILDPALLRPG 190 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC---------CS---CGGGSCTTTSSTT
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe---------cC---ChhhcCccccccc
Confidence 357999999998842 23445555555322 23444444 32 2566888898865
Q ss_pred ---hheeccCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCCCCH-HHHHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy18185 93 ---LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTRSTL-RYVVQLLTPAALTAKTNGRTAISKQDILEV 167 (190)
Q Consensus 93 ---~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~-l~~i~~~a~~gdl-R~ai~lL~~~~~~a~~~g~~~It~~~V~~~ 167 (190)
..+.+++++.++..++|+..++ ++.+++++ +..++.. +.|.. |..-+++..++..|.+.+...||.+++.++
T Consensus 191 Rfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~-t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~a 267 (499)
T 2dhr_A 191 RFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 267 (499)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTT-SCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHH
T ss_pred ccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Confidence 4789999999999999987654 44566555 7888888 57765 888899999988887777788999999998
Q ss_pred HHh
Q psy18185 168 STL 170 (190)
Q Consensus 168 ~~~ 170 (190)
+.-
T Consensus 268 l~~ 270 (499)
T 2dhr_A 268 ADR 270 (499)
T ss_dssp HHH
T ss_pred HHH
Confidence 853
No 77
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.23 E-value=1.2e-06 Score=66.21 Aligned_cols=71 Identities=24% Similarity=0.211 Sum_probs=52.2
Q ss_pred CeEEEEecCCCCC--------HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCC
Q psy18185 30 PGVLFIDEVHMLD--------LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~--------~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls 101 (190)
+.||+|||+|.+. .+.++.|..+++.+ ...+|++|+ .........+++++++||..+.|++++
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~i~~~~--------~~~~~~~~~~~~~l~~r~~~i~~~~p~ 186 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATT--------LDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHHTT-SCCEEEEEC--------HHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC-CeEEEEeCC--------HHHHHHHHhcCHHHHHHhceeecCCCC
Confidence 4699999999995 34488888888775 356777774 100000025789999999999999999
Q ss_pred HHHHHHHH
Q psy18185 102 QKDMEAII 109 (190)
Q Consensus 102 ~~ei~~iL 109 (190)
.++..++|
T Consensus 187 ~~~~~~il 194 (195)
T 1jbk_A 187 VEDTIAIL 194 (195)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99988765
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.23 E-value=2.9e-06 Score=79.47 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=78.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
++||||| .+.++++.|++.++.+ ...+|++|| .+.+.....+++++++||..+.|++++.++..++|
T Consensus 268 ~~iLfiD----~~~~~~~~L~~~l~~~-~v~~I~at~--------~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il 334 (758)
T 3pxi_A 268 NIILFID----AAIDASNILKPSLARG-ELQCIGATT--------LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQIL 334 (758)
T ss_dssp CCEEEEC----C--------CCCTTSS-SCEEEEECC--------TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHH
T ss_pred CEEEEEc----CchhHHHHHHHHHhcC-CEEEEeCCC--------hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHH
Confidence 4799999 5567899999999975 467888885 11000002578899999999999999999999999
Q ss_pred HHHHHh----cCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhh
Q psy18185 110 KLRANT----EGHVLDDEALVTLSEIG-----TRSTLRYVVQLLTPAALTAK 152 (190)
Q Consensus 110 ~~~~~~----~~~~i~~e~l~~i~~~a-----~~gdlR~ai~lL~~~~~~a~ 152 (190)
+..+.. .++.++++++.+++..+ .+.-.+.|+.+++.+...+.
T Consensus 335 ~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 335 QGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp HHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHH
Confidence 977654 68899999999999873 12345889999998875443
No 79
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.97 E-value=0.00013 Score=60.53 Aligned_cols=109 Identities=11% Similarity=0.136 Sum_probs=72.7
Q ss_pred CeEEEEecCCCCCH-------HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCCC
Q psy18185 30 PGVLFIDEVHMLDL-------ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-------~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ls 101 (190)
+-+|+|||+|.+.. +....|..+.+..+...+|+++..... +... ........++..|. ..+.+.|++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~-l~~~---l~~~~~~~~l~~~~~~~i~l~pl~ 204 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGL-LHDF---LKITDYESPLYGRIAGEVLVKPFD 204 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHH-HHHH---HCTTCTTSTTTTCCCEEEECCCCC
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHH-HHHH---HhhcCCCCccccCccceeeCCCCC
Confidence 36899999999864 667777777776544566776631000 0000 00001112244454 489999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLL 144 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL 144 (190)
.+|..+.+.......|..++++.+..+... ++|.+.. ++.+
T Consensus 205 ~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~-tgG~P~~-l~~~ 245 (350)
T 2qen_A 205 KDTSVEFLKRGFREVNLDVPENEIEEAVEL-LDGIPGW-LVVF 245 (350)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHH-HTTCHHH-HHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hCCCHHH-HHHH
Confidence 999999999887777888999999999999 5888864 4444
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.85 E-value=0.00088 Score=55.70 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=59.6
Q ss_pred CCeEEEEecCCCCCH-------------HHHHHHHHHhhcc--------------CCCEEEEEecCCcccccCCCCCCCC
Q psy18185 29 VPGVLFIDEVHMLDL-------------ETFTYLHRALESA--------------IAPIVIFATNRGRCLVRGTDDIISP 81 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-------------~~~~~L~~~~E~~--------------~~~~iIlatn~~~~~~~~t~~~~~~ 81 (190)
.+.||||||+|.+.. ..++.|+.+++.. ..+.+|++|| .+
T Consensus 99 ~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN-------------~~ 165 (293)
T 3t15_A 99 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGN-------------DF 165 (293)
T ss_dssp SCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECS-------------SC
T ss_pred CCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecC-------------Cc
Confidence 358999999998854 3568899998622 1256777775 26
Q ss_pred CCCChhHhh--hhhh-eeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHH
Q psy18185 82 HGIPLDLLD--RLLI-IRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLR 138 (190)
Q Consensus 82 ~~l~~~l~S--R~~~-i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR 138 (190)
..+++++++ |+.. +. .++.++..++++......+ ++.+.+..++...+..++.
T Consensus 166 ~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 166 STLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred ccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 778888885 5533 43 3499999999998876665 4566666666553455664
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.70 E-value=3.5e-05 Score=58.08 Aligned_cols=63 Identities=24% Similarity=0.160 Sum_probs=45.8
Q ss_pred CeEEEEecCCCCC---------HHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCC
Q psy18185 30 PGVLFIDEVHMLD---------LETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~---------~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~l 100 (190)
+.+|||||+|.+. .+.++.|...++.+ ...+|+++| .........+++++++||..+.++++
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~ii~~~~--------~~~~~~~~~~~~~l~~R~~~i~i~~p 186 (187)
T 2p65_A 116 QVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG-ELRCIGATT--------VSEYRQFIEKDKALERRFQQILVEQP 186 (187)
T ss_dssp SEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT-CSCEEEEEC--------HHHHHHHTTTCHHHHHHEEEEECCSC
T ss_pred ceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC-CeeEEEecC--------HHHHHHHHhccHHHHHhcCcccCCCC
Confidence 4699999999997 57788888888875 456777774 10000012578999999998998887
Q ss_pred C
Q psy18185 101 N 101 (190)
Q Consensus 101 s 101 (190)
+
T Consensus 187 ~ 187 (187)
T 2p65_A 187 S 187 (187)
T ss_dssp C
T ss_pred C
Confidence 5
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.38 E-value=0.00048 Score=57.12 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=67.9
Q ss_pred CeEEEEecCCCCCH----HHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCCCHHH
Q psy18185 30 PGVLFIDEVHMLDL----ETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQKD 104 (190)
Q Consensus 30 ~~Il~IDEi~~L~~----~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ls~~e 104 (190)
+-+|+|||+|.++. +....|..+.+......+|+++.... .+... ........++..|. ..+.+.|++.+|
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~-~l~~~---l~~~~~~~~l~~r~~~~i~l~~l~~~e 213 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMG-LLYDY---LRVEDPESPLFGRAFSTVELKPFSREE 213 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHH-HHHHH---TTTTCTTSTTTTCCCEEEEECCCCHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchH-HHHHH---HhccCCCCccccCccceeecCCCCHHH
Confidence 46899999999853 45666766776644456777763100 00000 00001112355564 689999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
..+++.......|...++. ..+... ++|.+...-.+..
T Consensus 214 ~~~~l~~~~~~~~~~~~~~--~~i~~~-t~G~P~~l~~~~~ 251 (357)
T 2fna_A 214 AIEFLRRGFQEADIDFKDY--EVVYEK-IGGIPGWLTYFGF 251 (357)
T ss_dssp HHHHHHHHHHHHTCCCCCH--HHHHHH-HCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcH--HHHHHH-hCCCHHHHHHHHH
Confidence 9999998776556666554 777788 5888876444433
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.36 E-value=0.00021 Score=53.06 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=44.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC--CCEEEEEecCCcccccCCCCCCCCCC----CChhHhhhh--hheeccCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI--APIVIFATNRGRCLVRGTDDIISPHG----IPLDLLDRL--LIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~--~~~iIlatn~~~~~~~~t~~~~~~~~----l~~~l~SR~--~~i~~~~l 100 (190)
.+++||||+|.++.+.|..|++++++.. .+.+|++||. + +.. +.+++..|+ ..+.++|+
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~---------~---~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY---------A---AGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE---------C---TTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC---------C---HHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 3799999999999999999999999853 3678888862 1 222 445677775 34677776
No 84
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.19 E-value=0.00055 Score=50.81 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=45.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh--hheeccCC
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTPY 100 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~--~~i~~~~l 100 (190)
++|||||+|.|+.+.|..|+++++.... ..+|++||...... .....+.+++..|+ ..+.++|+
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~------~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVEL------AASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHH------HHHSCCCHHHHHHHHHHEEECCCC
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHH------HHcCCCCHHHHHHhcCCEEeCCCC
Confidence 7999999999999999999999976543 67888886210000 00224567888885 45777776
No 85
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.09 E-value=0.0015 Score=61.99 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCeEEEEecCCCCCH-----------HHHHHHHHHhhccC---CCEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh
Q psy18185 29 VPGVLFIDEVHMLDL-----------ETFTYLHRALESAI---APIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~~---~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~ 92 (190)
.+.||||||+|.|.+ ...+.|+..++.-. .+.+|.+|| .|..+++.+++ |+
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN-------------~~d~LD~ALrR~GRF 363 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN-------------RPNSIDPALRRFGRF 363 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS-------------STTTSCTTTTSTTSS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC-------------ChhhcCHHHhCCccc
Confidence 368999999999942 34556666665422 244555664 37889999998 66
Q ss_pred -hheeccCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy18185 93 -LIIRTTPYNQKDMEAIIKLRANTEGHVLDDE-ALVTLSEIGTRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 93 -~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e-~l~~i~~~a~~gdlR~ai~lL~~~~~~a 151 (190)
..+.++.++.++-.++|+...++.. +.++ -+..|+..+.+......-.++..|+..|
T Consensus 364 d~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A 422 (806)
T 3cf2_A 364 DREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCSEAALQA 422 (806)
T ss_dssp CEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred ceEEecCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999987665432 2222 3677888843335555555666665444
No 86
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.04 E-value=0.021 Score=46.93 Aligned_cols=131 Identities=24% Similarity=0.212 Sum_probs=77.5
Q ss_pred CCeEEEEecCCCCCH-----------HHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhh--hh-
Q psy18185 29 VPGVLFIDEVHMLDL-----------ETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD--RL- 92 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-----------~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S--R~- 92 (190)
.+.++|+||+|.+.. ...+.++..+..+.. ..+++++ ++ .|..++++++. |+
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~---------tn---~p~~LD~al~r~gRfd 170 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAA---------TN---RPDIIDPAILRPGRLD 170 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEE---------ES---CGGGSCHHHHSTTSSC
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEee---------cC---ChhhCCHhhcCcccCC
Confidence 357999999998732 233444555543222 3444444 22 36778888887 66
Q ss_pred hheeccCCCHHHHHHHHHHHHHhc-CCCCCH-HHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhhc-----------CCC
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRANTE-GHVLDD-EALVTLSEIG--TRSTLRYVVQLLTPAALTAKTN-----------GRT 157 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~~~~-~~~i~~-e~l~~i~~~a--~~gdlR~ai~lL~~~~~~a~~~-----------g~~ 157 (190)
..+.++.++.++..++++...+.. ...+++ --+..++..+ .+-+....-+++..|+..|.++ +..
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 250 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGEL 250 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------C
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence 568899999999999998876532 222222 2255666531 1223444455566665444321 233
Q ss_pred cccHHHHHHHHHhc
Q psy18185 158 AISKQDILEVSTLF 171 (190)
Q Consensus 158 ~It~~~V~~~~~~f 171 (190)
.||.++...++..+
T Consensus 251 ~i~~~df~~al~~~ 264 (274)
T 2x8a_A 251 KVSHKHFEEAFKKV 264 (274)
T ss_dssp CBCHHHHHHHHTTC
T ss_pred eecHHHHHHHHHHh
Confidence 68888888887643
No 87
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.69 E-value=0.002 Score=61.11 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=55.4
Q ss_pred CeEEEEecCCCCCH--------------HHHHHHHHHhhccCC--CEEEE-EecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLDL--------------ETFTYLHRALESAIA--PIVIF-ATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--------------~~~~~L~~~~E~~~~--~~iIl-atn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.||||||+|.+.. ...+.|+..++.-.. .++|+ +|| .|..++++++.
T Consensus 571 P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN-------------~p~~lD~AllRpg 637 (806)
T 3cf2_A 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN-------------RPDIIDPAILRPG 637 (806)
T ss_dssp SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-C-------------CSSSSCHHHHSTT
T ss_pred CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCC-------------CchhCCHhHcCCC
Confidence 58999999999942 245677777774322 34544 554 37889999987
Q ss_pred hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHh
Q psy18185 91 RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG---TRSTLRYVVQLLTPAALTA 151 (190)
Q Consensus 91 R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a---~~gdlR~ai~lL~~~~~~a 151 (190)
|+ ..+.++.++.++..++++...++..+.- +--++.|++.+ +..|+..+ +..|+..|
T Consensus 638 Rfd~~i~v~lPd~~~R~~il~~~l~~~~~~~-~~dl~~la~~t~g~SGadi~~l---~~~A~~~a 698 (806)
T 3cf2_A 638 RLDQLIYIPLPDEKSRVAILKANLRKSPVAK-DVDLEFLAKMTNGFSGADLTEI---CQRACKLA 698 (806)
T ss_dssp TSCCEEEC-----CHHHHTTTTTSSCC--CC-C----------------CHHHH---HHHHHHHH
T ss_pred cceEEEEECCcCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHhCCCCCHHHHHHH---HHHHHHHH
Confidence 77 5788999999999999887665543321 12256666663 23366543 44444433
No 88
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.67 E-value=0.0024 Score=53.07 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=54.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhh--------ccC------CCEEEEEecCCccc-ccCCCCCCCCCCCChhHhhhhhhe
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALE--------SAI------APIVIFATNRGRCL-VRGTDDIISPHGIPLDLLDRLLII 95 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E--------~~~------~~~iIlatn~~~~~-~~~t~~~~~~~~l~~~l~SR~~~i 95 (190)
+.|+++|-..+..++++.+.++++ ... .+.+|++||-.-.. +.|.. +.....+.|+|||.+|
T Consensus 149 k~i~l~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~---~s~~~~~~L~sR~~~f 225 (267)
T 1u0j_A 149 KMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNS---TTFEHQQPLQDRMFKF 225 (267)
T ss_dssp CSEEEECSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTE---EECTTHHHHHTTEEEE
T ss_pred cEEEEeccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCc---cchhhhHHHhhhEEEE
Confidence 444445555565677788888888 211 24577777621000 00100 0123446799999999
Q ss_pred ecc--------CCCHHHHHHHHHHHHHhcCCCCCH
Q psy18185 96 RTT--------PYNQKDMEAIIKLRANTEGHVLDD 122 (190)
Q Consensus 96 ~~~--------~ls~~ei~~iL~~~~~~~~~~i~~ 122 (190)
+|+ ++++++....+... +.+++++++
T Consensus 226 ~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 226 ELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp ECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred ECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 999 99999999999844 677766654
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.59 E-value=2.2e-05 Score=74.39 Aligned_cols=110 Identities=23% Similarity=0.224 Sum_probs=65.7
Q ss_pred CeEEEEecCCCCC--------------HHHHHHHHHHhhccCC---CEEEEEecCCcccccCCCCCCCCCCCChhHhh--
Q psy18185 30 PGVLFIDEVHMLD--------------LETFTYLHRALESAIA---PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD-- 90 (190)
Q Consensus 30 ~~Il~IDEi~~L~--------------~~~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~S-- 90 (190)
+.|+||||+|.+. ...++.|+..++.... +.+|++|| .|..+++++++
T Consensus 571 p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN-------------~~~~ld~allrpg 637 (806)
T 1ypw_A 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN-------------RPDIIDPAILRPG 637 (806)
T ss_dssp SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCB-------------SCGGGSCTTSSGG
T ss_pred CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecC-------------CcccCCHHHhCcc
Confidence 4799999999873 2355677777764322 44555564 36778889988
Q ss_pred hhh-heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhh
Q psy18185 91 RLL-IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKT 153 (190)
Q Consensus 91 R~~-~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~ 153 (190)
||. .+.|++++.++...+++..+++..+. .+..+..+++.+..-+-+..-+++..|...|.+
T Consensus 638 Rf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 638 RLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp GTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHS
T ss_pred ccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 884 78999999999999998776543321 111233444442111223444455555554443
No 90
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.41 E-value=0.024 Score=37.46 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=51.9
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 108 IIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 108 iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
++.+..+..|+ .+++.+...+.+++ -|++..+|..|..+|+..|++.|+.++|+-++..-.
T Consensus 6 ~i~~iLk~~G~~~~~~~v~~~L~e~~----~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 6 VIMSILKELNVQEYEPRVVNQLLEFT----FRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHTTCCCBCTHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCcccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 44555566777 79999999999995 599999999999999999999999999998886543
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.32 E-value=0.043 Score=51.89 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHcCccccCCeEEEEecCCCCC-----------HHHHHHHHHHhhccCC---CEEEEEecCCcccccCC
Q psy18185 10 RKEINKVVNKYIDQGIAELVPGVLFIDEVHMLD-----------LETFTYLHRALESAIA---PIVIFATNRGRCLVRGT 75 (190)
Q Consensus 10 R~~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~-----------~~~~~~L~~~~E~~~~---~~iIlatn~~~~~~~~t 75 (190)
...+..+.+..... .+.++||||+|.+. ...++.|+..++.... +.+|++||
T Consensus 283 ~~~l~~vf~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn--------- 348 (806)
T 1ypw_A 283 ESNLRKAFEEAEKN-----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN--------- 348 (806)
T ss_dssp HHHHHHHHHHHHHH-----CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS---------
T ss_pred HHHHHHHHHHHHhc-----CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC---------
Confidence 33455555543322 25799999998884 2466778888775332 45666664
Q ss_pred CCCCCCCCCChhHhh--hh-hheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC
Q psy18185 76 DDIISPHGIPLDLLD--RL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS 135 (190)
Q Consensus 76 ~~~~~~~~l~~~l~S--R~-~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g 135 (190)
++..+++.+++ |+ ..+.+..++.++..++++..+....+. ++..+..++..+ .|
T Consensus 349 ----~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t-~g 405 (806)
T 1ypw_A 349 ----RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANET-HG 405 (806)
T ss_dssp ----CTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSC-SS
T ss_pred ----CchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhh-cC
Confidence 36678888877 66 567899999999999998776554332 222356666663 44
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.05 E-value=0.0071 Score=45.31 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=33.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhh----ccCCCEEEEEecCCcccccCCCCCCCCCCCC--hhHhhhhh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALE----SAIAPIVIFATNRGRCLVRGTDDIISPHGIP--LDLLDRLL 93 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E----~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~--~~l~SR~~ 93 (190)
+++|+|||++.++...+..|..+++ .+ .+.+|++||. +|..+. ++++||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g-~~~iiits~~------------~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSG-KGFLLLGSEY------------TPQQLVIREDLRTRMA 140 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHT-CCEEEEEESS------------CTTTSSCCHHHHHHGG
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcC-CcEEEEECCC------------CHHHccccHHHHHHHh
Confidence 4799999999998655666666554 32 2446777752 233332 89999984
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.33 E-value=0.028 Score=59.58 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=56.2
Q ss_pred eEEEEecCCCCCH------HHHHHHHHHhhccC-------------CCEEEEEecCCcccccCCCCCCCC-----CCCCh
Q psy18185 31 GVLFIDEVHMLDL------ETFTYLHRALESAI-------------APIVIFATNRGRCLVRGTDDIISP-----HGIPL 86 (190)
Q Consensus 31 ~Il~IDEi~~L~~------~~~~~L~~~~E~~~-------------~~~iIlatn~~~~~~~~t~~~~~~-----~~l~~ 86 (190)
.|+||||+|.-.. .....|+..+|.+. ...+|.|+| || +.+++
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~N-------------pp~~gGR~~l~~ 1404 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACN-------------PPTDPGRIPMSE 1404 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEEC-------------CTTSTTCCCCCH
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecC-------------CCccCCCccCCh
Confidence 5999999887643 47788888888532 135666774 23 46899
Q ss_pred hHhhhhhheeccCCCHHHHHHHHHHHHHh
Q psy18185 87 DLLDRLLIIRTTPYNQKDMEAIIKLRANT 115 (190)
Q Consensus 87 ~l~SR~~~i~~~~ls~~ei~~iL~~~~~~ 115 (190)
.|++||.++.++.++++++..|+..+...
T Consensus 1405 rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1405 RFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred hhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999877653
No 94
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.82 E-value=0.018 Score=44.60 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=40.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPY 100 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~l 100 (190)
..+|+|||+|.++++....|.++.+.+ ..+++++.. ++-..+|+..++.+++++ .+.+++.+
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~--~~Vi~~Gl~-------~~f~~~~f~~~~~ll~~ad~v~~l~~i 139 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRG--IDVFCAGLD-------LTHKQNPFETTALLLSLADTVIKKKAV 139 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTT--CEEEEEEES-------BCTTSCBCHHHHHHHHHCSEEEECCBC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCC--CCEEEEeec-------cccccCCccchHHHHHHhhheEEeeee
Confidence 469999999999888888888888873 335554431 211113555567788887 34455544
No 95
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=94.37 E-value=0.16 Score=36.75 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 106 EAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 106 ~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
..+++..+...|+.++++++..|++.. .+++.++..-+..+|+-.|++.|+.+||.-+..
T Consensus 34 ~rIvke~gaer~~~vS~~ai~aL~El~----~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 34 GCLCEEVALDKEMQFSKQTIAAISELT----FRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 444554555578999999999999993 688889998888889889999999999986653
No 96
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.33 E-value=0.041 Score=42.33 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=49.7
Q ss_pred CeEEEEecCC---CCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh--hhheeccCCCHHH
Q psy18185 30 PGVLFIDEVH---MLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR--LLIIRTTPYNQKD 104 (190)
Q Consensus 30 ~~Il~IDEi~---~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR--~~~i~~~~ls~~e 104 (190)
+.++++||++ .++...+..+.+++++. ++.+|++++. + ....+...+.+| |.++.+.+.+.++
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~~i~~~H~-------~----h~~~~~~~i~~r~~~~i~~~~~~~r~~ 167 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIPI-------R----DVHPLVKEIRRLPGAVLIELTPENRDV 167 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECCS-------S----CCSHHHHHHHTCTTCEEEECCTTTTTT
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCeEEEEEcc-------C----CCchHHHHHHhcCCcEEEEecCcCHHH
Confidence 5899999964 45678899999999884 4556777741 1 122234567888 8899999988877
Q ss_pred HHHHHHH
Q psy18185 105 MEAIIKL 111 (190)
Q Consensus 105 i~~iL~~ 111 (190)
+...|..
T Consensus 168 ~~~~l~~ 174 (178)
T 1ye8_A 168 ILEDILS 174 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 97
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=94.00 E-value=0.25 Score=35.39 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 107 AIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
.+++..+...|..++++++..|.+.. .+++.++..-+..+|+..|++.|+.+||+-++.-
T Consensus 27 rI~~~~g~~~~~~vs~~~i~aL~E~~----~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 27 CLCQDVAEDKGVLFSKQTVAAISEIT----FRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHTCEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHhhhcCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 33444444457789999999999993 6899999999999999899999999999977643
No 98
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.17 Score=35.10 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=43.1
Q ss_pred cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 116 EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 116 ~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
.|+.++++++..|++.. .+++.++..-+..+|+..|++.|+.++|.-+.
T Consensus 29 ~g~~vs~~~i~aL~e~~----~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~ 77 (90)
T 3v9r_A 29 EDIKYTPRFINSLLELA----YLQLGEMGSDLQAFARHAGRGVVNKSDLMLYL 77 (90)
T ss_dssp SCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHT
T ss_pred cCceeCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 46899999999999993 68888899888888988999999999998654
No 99
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=93.69 E-value=0.23 Score=32.83 Aligned_cols=57 Identities=25% Similarity=0.194 Sum_probs=44.6
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 109 IKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 109 L~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++..++.-|+ .+++++...|+... +. ++-++++.+..+++..|++.+|.+||..++.
T Consensus 12 v~~iaes~Gi~~lsddaa~~LA~dv-Ey---r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 12 MKVIAESIGVGSLSDDAAKELAEDV-SI---KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHTTCCCBCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3444556677 79999999999984 43 3566778888888888999999999998764
No 100
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=93.64 E-value=0.26 Score=32.47 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=54.2
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
+.++.++-.+||+...++..+. ++--++.|++.+.+-+-...-+++..|+..|.+++...||.+++..++.-+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3578888899999887654321 2224788888853336667777888888888888888999999999886543
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.40 E-value=0.18 Score=37.79 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=27.3
Q ss_pred CeEEEEecCC--CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 30 PGVLFIDEVH--MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~--~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
+.+|+|||++ .++...+..|..+++.. .+..+|++||
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5899999999 56777777777777643 2356788886
No 102
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.59 E-value=0.52 Score=40.09 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=56.4
Q ss_pred CeEEEEecCCCCC----HHHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCC--------hhHhhhhhhe
Q psy18185 30 PGVLFIDEVHMLD----LETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIP--------LDLLDRLLII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~----~~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~--------~~l~SR~~~i 95 (190)
+.+++|||+|.+. +.....+.+.+.+..+ ..++++|.. |..+. .++.+.|...
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~-------------~~d~~~~~~~~~~~~il~n~~~~ 329 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQN-------------VIDFLAPEVQRYGQALLDNPTYK 329 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESC-------------GGGGGSTTTHHHHHHHHHSCSEE
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCC-------------HHHhhChhhHHHHHHHHHhhhhh
Confidence 6799999999995 3455566666655443 678888842 33332 3688888665
Q ss_pred eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC
Q psy18185 96 RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS 135 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~g 135 (190)
-+-+.++.++..+.+ ..+ ++++.++.|... ..|
T Consensus 330 i~l~~~~~~~~~~~~----~~~--ls~~e~~~l~~~-~~G 362 (392)
T 4ag6_A 330 LLLAQGEKDLEAITT----LMN--LSEAEHDLLVNA-KRG 362 (392)
T ss_dssp EECSCCHHHHHHHHH----HTT--CCHHHHHHHHTC-CTT
T ss_pred heeCCChhhHHHHHH----HhC--CCHHHHHhccCC-CCc
Confidence 555667776554332 233 789888888877 344
No 103
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=92.49 E-value=0.44 Score=35.65 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=46.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 110 KLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 110 ~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
...+...|+.++++++..|+... .+++.++..-+..+|+..|++.|+.+||.-++
T Consensus 30 ee~~~~~~~~vS~~ai~aL~El~----~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~ 84 (140)
T 3vh5_A 30 QDVAEDKGVLFSKQTVAAISEIT----FRQAENFARDLEMFARHAKRSTITSEDVKLLA 84 (140)
T ss_dssp HHHHHHHTCEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 33334468999999999999993 68888999888888988999999999998766
No 104
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=91.74 E-value=0.38 Score=32.63 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=51.8
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
.|++.++-.+||+...++..+. ++--++.|++.+.+-+--..-+++..|+..|.+++...||.+++..++.-
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4788999999998887654322 12226778888533355666677888888888888889999999888753
No 105
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=91.68 E-value=0.97 Score=29.37 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++..-+..+++.. ....+++++...+.+.+ -++..++++.+..+|+..|+..|+.+||.-++.
T Consensus 7 lp~a~v~Rl~r~~---g~~ris~~a~~~l~e~~----~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 7 LPIAPVDRLIRKA---GAERVSEQAAKVLAEYL----EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp SCHHHHHHHHHHT---TCSEECHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred CChHHHHHHHHHc---CcceeCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4455566666642 34479999999999994 378899999999999999999999999987753
No 106
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.31 E-value=0.082 Score=41.56 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=36.4
Q ss_pred CeEEEEecCCCC--CH-HHH--HHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-heeccC
Q psy18185 30 PGVLFIDEVHML--DL-ETF--TYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRTTP 99 (190)
Q Consensus 30 ~~Il~IDEi~~L--~~-~~~--~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-~i~~~~ 99 (190)
..||+|||+|.+ .. +.. .-++..++.... ..+|++|+ ++..+...+++|+. .+.+.+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq-------------~~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQ-------------GPKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEES-------------CGGGBCHHHHTTEEEEEEEEE
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECC-------------CHHHHhHHHHHHhheEEEEcC
Confidence 479999999999 22 111 123344444332 56888884 36778889999974 456655
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.08 E-value=0.26 Score=39.49 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=36.4
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHhhccC--------------CCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhh
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI 94 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~E~~~--------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~ 94 (190)
.+|++|||++.-..+ ....+..+++..+ .|-+|++|| . ++ ......+.|.||+..
T Consensus 104 ~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN--------~-~~-~~~~~~~~L~SRi~~ 173 (212)
T 1tue_A 104 TKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTN--------I-HP-AKDNRWPYLESRITV 173 (212)
T ss_dssp CSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEES--------S-CT-TSSSSCHHHHTSCEE
T ss_pred CCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecC--------C-Cc-ccccchhhhhhhEEE
Confidence 579999999843222 2345666666542 245788886 2 11 112223679999998
Q ss_pred eecc
Q psy18185 95 IRTT 98 (190)
Q Consensus 95 i~~~ 98 (190)
+.|+
T Consensus 174 f~F~ 177 (212)
T 1tue_A 174 FEFP 177 (212)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8887
No 108
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=89.76 E-value=0.87 Score=32.10 Aligned_cols=63 Identities=6% Similarity=0.161 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 100 YNQKDMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
++..-+..+++ ..|+ .|++++.++++... + .++-++++.|..+++..++..||.+||..++.-
T Consensus 30 ip~~~I~Rlar----~~G~~rIs~~a~~~l~~vl-e---~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 30 ITKPAIRRLAR----RGGVKRISGLIYEEVRNVL-K---TFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp CCHHHHHHHHH----HTTCCEECTTHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HcCccccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 55555555554 3455 48899999998883 3 467788888888898899999999999988853
No 109
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=89.63 E-value=0.9 Score=31.99 Aligned_cols=63 Identities=6% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 100 YNQKDMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
++..-+..+++ ..|+ .|++++.++++... + .++-++++.|..+++..++..||.+||..++.-
T Consensus 30 ip~~~I~Rlar----~~G~~rIs~~a~~~l~~vl-e---~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 30 ITKPAIRRLAR----RGGVKRISGLIYEETRGVL-K---VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp SCHHHHHHHHH----HTTCCEECTTHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HcCccccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 55555555544 3455 48899999998883 3 467788888888998899999999999988853
No 110
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=89.56 E-value=0.21 Score=34.77 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=55.0
Q ss_pred heeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGT-RSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 94 ~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~-~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.+.++....+|+..+++ ..|+ -++++..++..++. .|.+|..-..|..|+-.|..+|.. ||.++|+.++.
T Consensus 7 r~~i~k~kk~DI~Aia~----AW~v-~d~~~~~~l~~I~~KpGaLR~ltktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 7 RTAINKTKKADVKAIAD----AWQI-NGEKELELLQQIAQKPGALRILNHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp TTCCSSCSGGGTTHHHH----SSTT-SSSHHHHHHHTTSSSCSCHHHHHHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred hhhccCCCHHHHHHHHH----HhCC-CCHHHHHHHHHHccCccHHHHHHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 45677888888887764 4676 47788888888853 389999999999888777666664 99999999884
No 111
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=89.31 E-value=0.99 Score=31.82 Aligned_cols=66 Identities=5% Similarity=0.132 Sum_probs=50.0
Q ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 97 TTPYNQKDMEAIIKLRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 97 ~~~ls~~ei~~iL~~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
...++...+..+++ ..|+ .|++++.+.+.... + .++-++++.|..+++..++..||.+||..++..
T Consensus 26 i~~ip~~~I~Rlar----~~Gv~rIS~da~~~l~~~l-e---~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr 92 (102)
T 1id3_B 26 IQGITKPAIRRLAR----RGGVKRISGLIYEEVRAVL-K---SFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92 (102)
T ss_dssp GGGSCHHHHHHHHH----HTTCCEECTTHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH----HcCchhccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 44466666655554 3466 48999999998883 3 467778888888898899999999999988853
No 112
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=89.30 E-value=0.74 Score=31.49 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=46.3
Q ss_pred CCCCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCccc
Q psy18185 81 PHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 160 (190)
Q Consensus 81 ~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It 160 (190)
...+|+++.+|+....|+ ..+-.|+++++..++++. + + .+...+.++...|+.+|...|+
T Consensus 10 ~~~i~~~li~ril~~~F~----------------~~kTkIs~dAl~l~aeyl-~--i-FV~EAv~RA~~~a~~e~~~~le 69 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFK----------------DDKTKVSGDALQLMVELL-K--V-FVVEAAVRGVRQAQAEDALRVD 69 (84)
T ss_dssp -CCCCHHHHHHHHHTTCS----------------STTCEECHHHHHHHHHHH-H--H-HHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCCCCHHHHHHHHHHHhc----------------CCCccccHHHHHHHHHHH-H--H-HHHHHHHHHHHHHHhcCCCccc
Confidence 345677776665543343 345678999999999883 2 1 2333445555556667888999
Q ss_pred HHHHHHHHHh
Q psy18185 161 KQDILEVSTL 170 (190)
Q Consensus 161 ~~~V~~~~~~ 170 (190)
++++++++.+
T Consensus 70 ~e~LEki~pQ 79 (84)
T 4dra_E 70 VDQLEKVLPQ 79 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 113
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=89.24 E-value=1 Score=41.06 Aligned_cols=70 Identities=21% Similarity=0.166 Sum_probs=53.1
Q ss_pred CCeEEEEecCCCC----CHHHHHHHHHHhhccCC--CEEEEEecCCcccccCCCCCCCCC--CCChhHhhhh-hheeccC
Q psy18185 29 VPGVLFIDEVHML----DLETFTYLHRALESAIA--PIVIFATNRGRCLVRGTDDIISPH--GIPLDLLDRL-LIIRTTP 99 (190)
Q Consensus 29 ~~~Il~IDEi~~L----~~~~~~~L~~~~E~~~~--~~iIlatn~~~~~~~~t~~~~~~~--~l~~~l~SR~-~~i~~~~ 99 (190)
++-+++|||+|.| .++....|.++...+.. ..+|++|.+ |. .++..+++-| ..+.|.-
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQR-------------Ps~d~I~~~Iran~~~RI~lrv 409 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQR-------------PSVDVITGLIKANIPTRIAFQV 409 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESC-------------CCTTTSCHHHHHTCCEEEEECC
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecC-------------cccccccHHHHhhhccEEEEEc
Confidence 4468889999988 35677888888887765 678888842 33 6788899988 4577888
Q ss_pred CCHHHHHHHHHH
Q psy18185 100 YNQKDMEAIIKL 111 (190)
Q Consensus 100 ls~~ei~~iL~~ 111 (190)
-+..+...+|..
T Consensus 410 ~s~~Dsr~ILd~ 421 (574)
T 2iut_A 410 SSKIDSRTILDQ 421 (574)
T ss_dssp SCHHHHHHHHSS
T ss_pred CCHHHHHHhcCc
Confidence 888888888753
No 114
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=89.07 E-value=0.97 Score=30.65 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=47.5
Q ss_pred CCCCChhHhhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCccc
Q psy18185 81 PHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAIS 160 (190)
Q Consensus 81 ~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It 160 (190)
...+||++.+|+..-.|+. .+-.|+++++..++++- +- .+..-+.++...|+.+|...|+
T Consensus 6 ~~~~~~~lI~ril~~~f~~----------------~ktrI~~dAl~l~aeyl-~i---FV~EAv~RA~~~a~~e~~~~le 65 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRD----------------GRTRVNGDALLLMAELL-KV---FVREAAARAARQAQAEDLEKVD 65 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCS----------------TTCEECHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCHHHHHHHHHHHhcc----------------CcccccHHHHHHHHHHH-HH---HHHHHHHHHHHHHHhCCCCeec
Confidence 3457777777765545543 35578999999999982 21 2333345555556667888999
Q ss_pred HHHHHHHHHh
Q psy18185 161 KQDILEVSTL 170 (190)
Q Consensus 161 ~~~V~~~~~~ 170 (190)
++++++++.+
T Consensus 66 ~~~LEki~pq 75 (81)
T 3b0b_C 66 IEHVEKVLPQ 75 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998844
No 115
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=88.73 E-value=0.92 Score=30.72 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 111 LRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 111 ~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+.++..|+ .+++++.+.+.... + .++-++++.|..+++..|++.||.+||..++.
T Consensus 18 Riar~~Gv~rIs~da~~~l~~~l-~---~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk 73 (84)
T 2hue_C 18 RLARRGGVKRISGLIYEETRGVL-K---VFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 73 (84)
T ss_dssp HHHHHTTCCEECTTHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHcCchhccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 33444566 48999999998873 3 46777888888888889999999999998874
No 116
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=88.26 E-value=1.8 Score=28.48 Aligned_cols=71 Identities=7% Similarity=0.051 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhc
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLF 171 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f 171 (190)
++.++..+||+...++..+. ++--++.|++.+.+-+--..-+++..|+..|.+++...||.+++..++.-.
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 46778888998877654332 122377888884233556666778888888888888899999999888644
No 117
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=87.29 E-value=14 Score=39.64 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=68.0
Q ss_pred eEEEEecCCCCCHHHHHHHH-------HHhhccC--------------CCEEEEEecCCcccccCCCCCCCCCCCChhHh
Q psy18185 31 GVLFIDEVHMLDLETFTYLH-------RALESAI--------------APIVIFATNRGRCLVRGTDDIISPHGIPLDLL 89 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~-------~~~E~~~--------------~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~ 89 (190)
..+++||++++..+..+++. ..+.+.. .+.++++.| + ++..-..+|..++
T Consensus 699 aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~N------P---gy~g~~eLP~~Lk 769 (2695)
T 4akg_A 699 AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLN------P---GYNGRSELPENLK 769 (2695)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEEC------C---CSSSSCCCCHHHH
T ss_pred CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeC------C---CccCcccccHHHH
Confidence 58999999999998888883 3332211 122333333 1 1112346899999
Q ss_pred hhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-------cC-----CCCHHHHHHHHHHHHHH
Q psy18185 90 DRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI-------GT-----RSTLRYVVQLLTPAALT 150 (190)
Q Consensus 90 SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~-------a~-----~gdlR~ai~lL~~~~~~ 150 (190)
+||..+.+..++.+.+.+++... .|+...+.....+... .+ ..++|....+|..|..+
T Consensus 770 ~~Fr~v~m~~Pd~~~i~ei~l~s---~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 770 KSFREFSMKSPQSGTIAEMILQI---MGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHH---HHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred hheEEEEeeCCCHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 99999999999999988887644 3544444443333321 11 24788877777766543
No 118
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=87.28 E-value=2.4 Score=30.26 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++...+..++++. .+..+++++.+.+.+.. -.++.++...+..+|+..|++.|+.+||..++.
T Consensus 8 lP~a~I~Ri~r~~---g~~rIS~~a~~~l~e~l----~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalr 70 (111)
T 3b0c_T 8 IASSLIKQIFSHY---VKTPVTRDAYKIVEKCS----ERYFKQISSDLEAYSQHAGRKTVEMADVELLMR 70 (111)
T ss_dssp --CHHHHHHHHHH---HCSCBCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHC---CCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3344555555433 34579999999999984 367888888888899989999999999999883
No 119
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=86.53 E-value=1.8 Score=29.11 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
+.++-.+||+...++..+. ++--++.|++.+.+-+--..-+++..|+..|.+++...||.+++..++.-
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 3445667777766554332 12237788888533355666778888888888888889999999998864
No 120
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.11 E-value=1.3 Score=35.30 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=27.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNR 67 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~ 67 (190)
+.+|+|||++.++.+....+..+... ...+|+++..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~--gi~Vil~Gl~ 125 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAEN--GFVVIISGLD 125 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHT--TCEEEEECCS
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhC--CCeEEEEecc
Confidence 58999999999998877777665554 4567887764
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.01 E-value=1.6 Score=47.33 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=52.5
Q ss_pred eEEEEecCCCCCH------HHHHHHHHHhhccC-----C--------CEEEEEecCCcccccCCCCCCCCCCCChhHhhh
Q psy18185 31 GVLFIDEVHMLDL------ETFTYLHRALESAI-----A--------PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91 (190)
Q Consensus 31 ~Il~IDEi~~L~~------~~~~~L~~~~E~~~-----~--------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR 91 (190)
.|+||||++.-.. .....|+.++|.+. . +.+|.|.|- .|. ..-+.+++.|++|
T Consensus 1376 ~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnP-----p~~---gGr~~l~~Rf~r~ 1447 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNP-----PTD---AGRVQLTHRFLRH 1447 (3245)
T ss_dssp EEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECC-----TTS---TTCCCCCHHHHTT
T ss_pred EEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCC-----CCC---CCCccCCHHHHhh
Confidence 4888999997754 47788888888531 1 235555531 000 0124588999999
Q ss_pred hhheeccCCCHHHHHHHHHHHH
Q psy18185 92 LLIIRTTPYNQKDMEAIIKLRA 113 (190)
Q Consensus 92 ~~~i~~~~ls~~ei~~iL~~~~ 113 (190)
|.++.++.++++++..|.....
T Consensus 1448 F~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1448 APILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CCEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999999865443
No 122
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=84.54 E-value=3.9 Score=26.09 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
.-+..+++.. .+..++.++...+.+.+ + -+...+...+...|...++..|+.+||..++..
T Consensus 6 a~v~Ri~k~~---~~~ris~~A~~~l~~a~-e---~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 6 APIGRIIKNA---GAERVSDDARIALAKVL-E---EMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHHT---TCSEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred cHHHHHHhcC---CcccCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3445555544 45679999999999884 3 366777888888999899999999999988753
No 123
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=82.69 E-value=2.2 Score=38.01 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=52.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHHH
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIK 110 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL~ 110 (190)
-+|+||+++....- .+.. .++..+|++|+ .. .+......-...+.+++++.++-.+.+.
T Consensus 245 ~LlVLDdv~~~~~~---~~~~----~~gs~ilvTTR--------~~------~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 303 (549)
T 2a5y_B 245 TLFVFDDVVQEETI---RWAQ----ELRLRCLVTTR--------DV------EISNAASQTCEFIEVTSLEIDECYDFLE 303 (549)
T ss_dssp EEEEEEEECCHHHH---HHHH----HTTCEEEEEES--------BG------GGGGGCCSCEEEEECCCCCHHHHHHHHH
T ss_pred EEEEEECCCCchhh---cccc----cCCCEEEEEcC--------CH------HHHHHcCCCCeEEECCCCCHHHHHHHHH
Confidence 58889999985321 2221 13456777774 11 0111010112468999999999999998
Q ss_pred HHHHhcCC-CCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18185 111 LRANTEGH-VLDDEALVTLSEIGTRSTLRYVVQLLT 145 (190)
Q Consensus 111 ~~~~~~~~-~i~~e~l~~i~~~a~~gdlR~ai~lL~ 145 (190)
.++-.... .-.++....|++. ++| +.-|+.++.
T Consensus 304 ~~a~~~~~~~~~~~~~~~I~~~-c~G-lPLAl~~~g 337 (549)
T 2a5y_B 304 AYGMPMPVGEKEEDVLNKTIEL-SSG-NPATLMMFF 337 (549)
T ss_dssp HTSCCCC--CHHHHHHHHHHHH-HTT-CHHHHHHHH
T ss_pred HHhcCCCCchhHHHHHHHHHHH-hCC-ChHHHHHHH
Confidence 77422211 1113457778888 355 556777663
No 124
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=82.54 E-value=8.4 Score=25.63 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++...+.+.+++.. .+..+++++-+.+.+.| . -..-+.+..+..+|+.++...+.+.+|+-.++
T Consensus 6 l~k~~L~~Lv~~id--p~~~ld~~vee~ll~lA-D---dFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 6 LTKKKLQDLVREVD--PNEQLDEDVEEMLLQIA-D---DFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SCHHHHHHHHHHHC--SSCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccHHHHHHHHHhcC--CCCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 56777888887764 45579999999999996 3 24556778888999988998999999976663
No 125
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=81.37 E-value=5.6 Score=26.11 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
|...-+..+++... .+..++.++...+.+.+ + -+...+-..|...|..+++..|+.+||..++...+
T Consensus 5 LP~A~V~rI~K~~~--p~~~is~~A~~~i~~~~-~---~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 5 VPRGTLRKIIKKHK--PHLRLAANTDLLVHLSF-L---LFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp CCHHHHHHHHHHHC--TTCEECTTHHHHHHHHH-H---HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhC--CCCccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 33445566666442 35678899999988884 1 23444445566788889999999999999886543
No 126
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=79.83 E-value=7 Score=26.94 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=41.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|- +.-+.+....+..+.+.+ +. |++++++. . ........+..-+.-|-.+|++.+++.
T Consensus 47 ~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l~ 113 (140)
T 3n53_A 47 PDLVILDM-DIIGENSPNLCLKLKRSKGLKNVPLILLFSS--------E----HKEAIVNGLHSGADDYLTKPFNRNDLL 113 (140)
T ss_dssp CSEEEEET-TC------CHHHHHHTSTTCTTCCEEEEECC----------------CTTTTTTCCCSEEEESSCCHHHHH
T ss_pred CCEEEEeC-CCCCCcHHHHHHHHHcCcccCCCCEEEEecC--------C----CHHHHHHHHhcCCCeeeeCCCCHHHHH
Confidence 57898883 333445666666666654 33 66666553 1 122233334444566778899999999
Q ss_pred HHHHHHHHh
Q psy18185 107 AIIKLRANT 115 (190)
Q Consensus 107 ~iL~~~~~~ 115 (190)
..+......
T Consensus 114 ~~i~~~~~~ 122 (140)
T 3n53_A 114 SRIEIHLRT 122 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999877643
No 127
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=78.95 E-value=12 Score=25.99 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=38.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-- .-+.+....+.++.+..+.+.+|+.|. .. .+......+...+.-|-.+|++.+++...|
T Consensus 50 ~dlvllD~~-lp~~~g~~l~~~l~~~~~~~~ii~ls~--------~~---~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 117 (141)
T 3cu5_A 50 PNVLLTDVR-MPRMDGIELVDNILKLYPDCSVIFMSG--------YS---DKEYLKAAIKFRAIRYVEKPIDPSEIMDAL 117 (141)
T ss_dssp CSEEEEESC-CSSSCHHHHHHHHHHHCTTCEEEEECC--------ST---TTCCC------CCCEEECSSCCHHHHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhhCCCCcEEEEeC--------CC---cHHHHHHHHhCCccEEEeCCCCHHHHHHHH
Confidence 578888742 222244555555555544433444442 21 123333445555566778899999999888
Q ss_pred HHHH
Q psy18185 110 KLRA 113 (190)
Q Consensus 110 ~~~~ 113 (190)
....
T Consensus 118 ~~~~ 121 (141)
T 3cu5_A 118 KQSI 121 (141)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 128
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=78.94 E-value=1.9 Score=32.47 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=8.0
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 163 ~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 163 FSLIIIDECHHTNK 176 (216)
T ss_dssp CSEEEETTC-----
T ss_pred ccEEEEECchhhcc
Confidence 47999999999954
No 129
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=76.81 E-value=3.1 Score=32.16 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=27.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNR 67 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~ 67 (190)
..+|+|||++.++++....+..+.+. ...+|+++.+
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~--~~~Vi~~Gl~ 117 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAES--GRRVICAGLD 117 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHT--TCEEEEEECS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEEecc
Confidence 48999999999998887777666555 3447777753
No 130
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=76.47 E-value=2.6 Score=33.52 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=27.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCC
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRG 68 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~ 68 (190)
..+|+|||++.++++....+..+... ...+|+++.++
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~~--~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLANR--GYRVIVAGLDQ 138 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEECSB
T ss_pred CCEEEEECcccCCHHHHHHHHHHhhC--CCEEEEEeccc
Confidence 57999999999998887777665554 34577877643
No 131
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=76.20 E-value=1.5 Score=34.76 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=17.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRAL 53 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~ 53 (190)
.+++||||+|++....+..+.+.+
T Consensus 193 ~~llIiDEaH~l~~~~~~~i~~~~ 216 (237)
T 2fz4_A 193 FMLLIFDEVHHLPAESYVQIAQMS 216 (237)
T ss_dssp CSEEEEECSSCCCTTTHHHHHHTC
T ss_pred CCEEEEECCccCCChHHHHHHHhc
Confidence 589999999999876555554444
No 132
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=75.84 E-value=9.1 Score=28.88 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
++..-+..++++. ....++.++...+.... + -++.++...|..+|+..|++.||.+||..++.
T Consensus 83 lP~a~V~Ri~k~~---g~~RVS~~A~~~l~~~l-e---~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~ 145 (154)
T 1f1e_A 83 FGRATVRRILKRA---GIERASSDAVDLYNKLI-C---RATEELGEKAAEYADEDGRKTVQGEDVEKAIT 145 (154)
T ss_dssp CCHHHHHHHHHHT---TCCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCccHHHHHHHHc---CCccchHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3444456666543 34468999999988884 3 46788888999999999999999999999885
No 133
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=75.39 E-value=2.3 Score=33.24 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=21.0
Q ss_pred CeEEEEecCCCCCH--HHH-HHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDL--ETF-TYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--~~~-~~L~~~~E~~~~~~iIlat 65 (190)
.++++|||+|.++. +.. ..+..++...+...+++.+
T Consensus 177 ~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 177 ISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp CCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 48999999999643 333 3445555544444344433
No 134
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=75.38 E-value=12 Score=25.29 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=42.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|-- .-+.+....+..+.+..+. |++++++. . ........+..-+.-|-.+|++.+++...
T Consensus 48 ~dlvl~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (136)
T 1mvo_A 48 PDLIVLDVM-LPKLDGIEVCKQLRQQKLMFPILMLTAK--------D----EEFDKVLGLELGADDYMTKPFSPREVNAR 114 (136)
T ss_dssp CSEEEEESS-CSSSCHHHHHHHHHHTTCCCCEEEEECT--------T----CCCCHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCEEEEecC-CCCCCHHHHHHHHHcCCCCCCEEEEECC--------C----CHHHHHHHHhCCCCEEEECCCCHHHHHHH
Confidence 578888732 2222445556666555434 65555552 1 12222233444455677889999999999
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
++.....
T Consensus 115 i~~~~~~ 121 (136)
T 1mvo_A 115 VKAILRR 121 (136)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9876543
No 135
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=75.24 E-value=2 Score=38.91 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..++|||||+++++...+..|++.+..+ ..+|+...
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~~--~~lilvGD 314 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPPG--ARVLLVGD 314 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCTT--CEEEEEEC
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcCC--CEEEEEec
Confidence 4589999999999999999998877643 55888773
No 136
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=74.23 E-value=18 Score=24.77 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=42.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
.+.++++|----=+.+....+..+.+.+..|++++++. . .+......+..-+.-|-.+|++.+++...
T Consensus 50 ~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 117 (140)
T 3h5i_A 50 YPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH--------T----EPAVVEKIRSVTAYGYVMKSATEQVLITI 117 (140)
T ss_dssp CCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS--------S----SCCCCGGGGGSCEEEEEETTCCHHHHHHH
T ss_pred CCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC--------C----CHHHHHHHHhCCCcEEEeCCCCHHHHHHH
Confidence 35899998432001234444444444444466666653 1 12233333444456677899999999998
Q ss_pred HHHHHH
Q psy18185 109 IKLRAN 114 (190)
Q Consensus 109 L~~~~~ 114 (190)
|....+
T Consensus 118 i~~~l~ 123 (140)
T 3h5i_A 118 VEMALR 123 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 137
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=74.07 E-value=18 Score=34.35 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=54.3
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccC-CCHHHHHHHH
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTP-YNQKDMEAII 109 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~-ls~~ei~~iL 109 (190)
-+|+||+++.. +.... + +++..+|++|+ . + .+..........+.+.+ +++++-.+.+
T Consensus 238 ~LlvlDd~~~~--~~~~~----~--~~~~~ilvTtR--------~-----~-~~~~~~~~~~~~~~~~~~l~~~~a~~l~ 295 (1249)
T 3sfz_A 238 SLLILDDVWDP--WVLKA----F--DNQCQILLTTR--------D-----K-SVTDSVMGPKHVVPVESGLGREKGLEIL 295 (1249)
T ss_dssp CEEEEESCCCH--HHHTT----T--CSSCEEEEEES--------S-----T-TTTTTCCSCBCCEECCSSCCHHHHHHHH
T ss_pred EEEEEecCCCH--HHHHh----h--cCCCEEEEEcC--------C-----H-HHHHhhcCCceEEEecCCCCHHHHHHHH
Confidence 48889999864 22211 1 33456777774 1 1 11101112235678886 9999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18185 110 KLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPA 147 (190)
Q Consensus 110 ~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~ 147 (190)
...+....-.. ++....|++. +.| +.-|+.++-..
T Consensus 296 ~~~~~~~~~~~-~~~~~~i~~~-~~g-lPLal~~~~~~ 330 (1249)
T 3sfz_A 296 SLFVNMKKEDL-PAEAHSIIKE-CKG-SPLVVSLIGAL 330 (1249)
T ss_dssp HHHHTSCSTTC-CTHHHHHHHH-TTT-CHHHHHHHHHH
T ss_pred HHhhCCChhhC-cHHHHHHHHH-hCC-CHHHHHHHHHH
Confidence 88774432222 3457778888 454 66787776543
No 138
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=73.84 E-value=12 Score=25.64 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=42.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+.++.+.+|+.|. . +......+...+.-|-.+|++.+++...+
T Consensus 56 ~dlvi~d~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~-----~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 121 (143)
T 2qv0_A 56 VDAIFLDI-NIPSLDGVLLAQNISQFAHKPFIVFITA--------W-----KEHAVEAFELEAFDYILKPYQESRIINML 121 (143)
T ss_dssp CSEEEECS-SCSSSCHHHHHHHHTTSTTCCEEEEEES--------C-----CTTHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEec-CCCCCCHHHHHHHHHccCCCceEEEEeC--------C-----HHHHHHHHhCCcceEEeCCCCHHHHHHHH
Confidence 57888873 2222345566666666554455555552 1 22222334444556777899999999988
Q ss_pred HHHHH
Q psy18185 110 KLRAN 114 (190)
Q Consensus 110 ~~~~~ 114 (190)
.....
T Consensus 122 ~~~~~ 126 (143)
T 2qv0_A 122 QKLTT 126 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 139
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=73.70 E-value=3.6 Score=35.74 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=29.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..++++|||++.++...+..|.+.++.. ..+++++.
T Consensus 128 ~~~~iiiDE~~~~~~~~~~~l~~~~~~~--~~~~~vGD 163 (459)
T 3upu_A 128 KCRVLICDEVSMYDRKLFKILLSTIPPW--CTIIGIGD 163 (459)
T ss_dssp SCSEEEESCGGGCCHHHHHHHHHHSCTT--CEEEEEEC
T ss_pred CCCEEEEECchhCCHHHHHHHHHhccCC--CEEEEECC
Confidence 3579999999999999999999998733 45777773
No 140
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=73.55 E-value=6.4 Score=26.57 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.+.++++|- +.-+.+....+.++.+..+. |++++++. . .+......+..-+.-|-.+|++.+++..
T Consensus 47 ~~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~ga~~~l~Kp~~~~~l~~ 113 (126)
T 1dbw_A 47 RNGVLVTDL-RMPDMSGVELLRNLGDLKINIPSIVITGH--------G----DVPMAVEAMKAGAVDFIEKPFEDTVIIE 113 (126)
T ss_dssp CSEEEEEEC-CSTTSCHHHHHHHHHHTTCCCCEEEEECT--------T----CHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEEC-CCCCCCHHHHHHHHHhcCCCCCEEEEECC--------C----CHHHHHHHHHhCHHHheeCCCCHHHHHH
Confidence 357888883 22222445555555555444 55555442 1 1111122333334567788999999999
Q ss_pred HHHHHHH
Q psy18185 108 IIKLRAN 114 (190)
Q Consensus 108 iL~~~~~ 114 (190)
.++....
T Consensus 114 ~i~~~~~ 120 (126)
T 1dbw_A 114 AIERASE 120 (126)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9987653
No 141
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=72.50 E-value=5.9 Score=34.06 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=12.4
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.++.
T Consensus 94 l~~vViDEaH~~~~ 107 (431)
T 2v6i_A 94 YNLYIMDEAHFLDP 107 (431)
T ss_dssp CSEEEEESTTCCSH
T ss_pred CCEEEEeCCccCCc
Confidence 48999999999974
No 142
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=71.95 E-value=19 Score=26.60 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.+.++++|- +.-+.+....+..+.+..+. |++++++. . .+......+..-+.-|-.+|.+.+++..
T Consensus 48 ~~dlvl~D~-~lp~~~g~~~~~~l~~~~~~~~ii~ls~~--------~----~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~ 114 (208)
T 1yio_A 48 QHGCLVLDM-RMPGMSGIELQEQLTAISDGIPIVFITAH--------G----DIPMTVRAMKAGAIEFLPKPFEEQALLD 114 (208)
T ss_dssp SCEEEEEES-CCSSSCHHHHHHHHHHTTCCCCEEEEESC--------T----TSCCCHHHHHTTEEEEEESSCCHHHHHH
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCCCCEEEEeCC--------C----CHHHHHHHHHCCCcEEEeCCCCHHHHHH
Confidence 357888873 32233455666666665444 66666552 1 1333334455555667788999999988
Q ss_pred HHHHHHH
Q psy18185 108 IIKLRAN 114 (190)
Q Consensus 108 iL~~~~~ 114 (190)
.+.....
T Consensus 115 ~i~~~~~ 121 (208)
T 1yio_A 115 AIEQGLQ 121 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876543
No 143
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=71.59 E-value=6.6 Score=27.03 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=44.2
Q ss_pred CeEEEEecCCCCC--HHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLD--LETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~--~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++| .+.-+ .+....+..+.+..+. |++++++. . .+......+..-+.-|-.+|++.+++.
T Consensus 51 ~dlvi~D-~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~ga~~~l~KP~~~~~l~ 117 (136)
T 3kto_A 51 AIGMIIE-AHLEDKKDSGIELLETLVKRGFHLPTIVMASS--------S----DIPTAVRAMRASAADFIEKPFIEHVLV 117 (136)
T ss_dssp EEEEEEE-TTGGGBTTHHHHHHHHHHHTTCCCCEEEEESS--------C----CHHHHHHHHHTTCSEEEESSBCHHHHH
T ss_pred CCEEEEe-CcCCCCCccHHHHHHHHHhCCCCCCEEEEEcC--------C----CHHHHHHHHHcChHHheeCCCCHHHHH
Confidence 5788887 33334 4677777777776544 55555442 1 011111223333455778899999999
Q ss_pred HHHHHHHHh
Q psy18185 107 AIIKLRANT 115 (190)
Q Consensus 107 ~iL~~~~~~ 115 (190)
..+......
T Consensus 118 ~~i~~~~~~ 126 (136)
T 3kto_A 118 HDVQQIING 126 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999877654
No 144
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=71.19 E-value=20 Score=24.19 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.-+..+++.... .+..++.++...+.+.+ + -+...+...|...|+..++..|+.+||..++.
T Consensus 12 a~i~ri~K~~~~-~~~~is~dA~~~l~~a~-e---~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 12 ANVARIMKNAIP-QTGKIAKDAKECVQECV-S---EFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHHTSC-TTCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hHHHHHHHHhCC-ccceeCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 334445543311 23569999999999884 2 35555667777888888999999999999985
No 145
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=70.76 E-value=2.2 Score=34.22 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
.+++++||+|++....+..+++.+.. .+.+++.|
T Consensus 226 ~~~vIiDEaH~~~~~~~~~il~~~~~--~~~~l~lS 259 (282)
T 1rif_A 226 FGMMMNDECHLATGKSISSIISGLNN--CMFKFGLS 259 (282)
T ss_dssp EEEEEEETGGGCCHHHHHHHTTTCTT--CCEEEEEC
T ss_pred CCEEEEECCccCCcccHHHHHHHhhc--CCeEEEEe
Confidence 37999999999987654444433322 24455544
No 146
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=70.08 E-value=35 Score=26.27 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh--ccChHH
Q psy18185 100 YNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL--FLDAKS 176 (190)
Q Consensus 100 ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~--f~~~~~ 176 (190)
+...-+..+++...- +..|+.++...|.+.+ . -+...+-..|...+...+++.|+.+||..++.- |.++..
T Consensus 16 LP~A~V~RImK~alp--~~rISkDA~~al~ec~-~---eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~ 88 (179)
T 1jfi_B 16 IPRAAINKMIKETLP--NVRVANDARELVVNCC-T---EFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYIS 88 (179)
T ss_dssp CCHHHHHHHHHHHST--TCCBCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHH
T ss_pred cCHHHHHHHHHHhCC--ccccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHH
Confidence 334455666665532 5789999999999885 2 244444455667888889999999999999832 555443
No 147
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=70.06 E-value=14 Score=25.33 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=43.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
.+.++++|- .-+.+....+..+.+..+.+.+|+.|. .. ........+..-+.-|-.+|++.+++...
T Consensus 48 ~~dlvi~d~--~~~~~g~~~~~~l~~~~~~~pii~ls~--------~~---~~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 114 (142)
T 2qxy_A 48 KIDLVFVDV--FEGEESLNLIRRIREEFPDTKVAVLSA--------YV---DKDLIINSVKAGAVDYILKPFRLDYLLER 114 (142)
T ss_dssp CCSEEEEEC--TTTHHHHHHHHHHHHHCTTCEEEEEES--------CC---CHHHHHHHHHHTCSCEEESSCCHHHHHHH
T ss_pred CCCEEEEeC--CCCCcHHHHHHHHHHHCCCCCEEEEEC--------CC---CHHHHHHHHHCCcceeEeCCCCHHHHHHH
Confidence 358999997 334566677777666654433444442 11 01111122333345567789999999999
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
+......
T Consensus 115 i~~~~~~ 121 (142)
T 2qxy_A 115 VKKIISS 121 (142)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9877643
No 148
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=69.83 E-value=12 Score=25.39 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=43.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+..+.+.+|+.|. .. .+......+..-+.-|-.+|.+.+++.+.+
T Consensus 47 ~dlii~d~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~~---~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 114 (134)
T 3f6c_A 47 PDIVIIDV-DIPGVNGIQVLETLRKRQYSGIIIIVSA--------KN---DHFYGKHCADAGANGFVSKKEGMNNIIAAI 114 (134)
T ss_dssp CSEEEEET-TCSSSCHHHHHHHHHHTTCCSEEEEEEC--------C------CTHHHHHHTTCSEEEEGGGCTHHHHHHH
T ss_pred CCEEEEec-CCCCCChHHHHHHHHhcCCCCeEEEEeC--------CC---ChHHHHHHHHhCCCEEEeCCCCHHHHHHHH
Confidence 57888873 2223355666666666655533444442 11 122222334444456778899999999999
Q ss_pred HHHHHhc
Q psy18185 110 KLRANTE 116 (190)
Q Consensus 110 ~~~~~~~ 116 (190)
+...+..
T Consensus 115 ~~~~~~~ 121 (134)
T 3f6c_A 115 EAAKNGY 121 (134)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8776543
No 149
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=69.62 E-value=4.9 Score=31.48 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=26.4
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCc
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGR 69 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~ 69 (190)
.+|+|||+|.+ ++....+..+.+.+ ..+|+++-++.
T Consensus 93 DvIlIDEaQFf-k~~ve~~~~L~~~g--k~VI~~GL~~D 128 (195)
T 1w4r_A 93 AVIGIDEGQFF-PDIVEFCEAMANAG--KTVIVAALDGT 128 (195)
T ss_dssp SEEEESSGGGC-TTHHHHHHHHHHTT--CEEEEEEESBC
T ss_pred CEEEEEchhhh-HHHHHHHHHHHHCC--CeEEEEecccc
Confidence 79999999999 77777777776554 34777775443
No 150
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=69.32 E-value=9.8 Score=29.02 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=41.3
Q ss_pred CCeEEEEecCCCC---CHHHHHHHHHHhhccCCCEEEE-Ee--cCCcccccCCCCCCCCCCCChhHhhh--hhheeccCC
Q psy18185 29 VPGVLFIDEVHML---DLETFTYLHRALESAIAPIVIF-AT--NRGRCLVRGTDDIISPHGIPLDLLDR--LLIIRTTPY 100 (190)
Q Consensus 29 ~~~Il~IDEi~~L---~~~~~~~L~~~~E~~~~~~iIl-at--n~~~~~~~~t~~~~~~~~l~~~l~SR--~~~i~~~~l 100 (190)
.+.|++|||+..+ +...+..|.++++... ++++. ++ ++ .+..+...+..+ +.++.+.+-
T Consensus 105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~-~~ilgti~vsh~------------~~~~~vd~i~~~~~~~i~~~~~~ 171 (189)
T 2i3b_A 105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG-TIILGTIPVPKG------------KPLALVEEIRNRKDVKVFNVTKE 171 (189)
T ss_dssp CCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS-CCEEEECCCCCS------------SCCTTHHHHHTTCCSEEEECCSS
T ss_pred CCCEEEEeCCCccccccHHHHHHHHHHHhCCC-cEEEEEeecCCC------------CchHHHHHHeecCCcEEEEeChH
Confidence 4679999997666 4578888888888753 43332 22 10 011122233332 577888877
Q ss_pred CHHHHHHHHHH
Q psy18185 101 NQKDMEAIIKL 111 (190)
Q Consensus 101 s~~ei~~iL~~ 111 (190)
+.+.+..-|..
T Consensus 172 nr~~~~~~i~~ 182 (189)
T 2i3b_A 172 NRNHLLPDIVT 182 (189)
T ss_dssp SGGGHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 77666655543
No 151
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=69.03 E-value=3.3 Score=37.65 Aligned_cols=36 Identities=36% Similarity=0.463 Sum_probs=28.6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
...+++|||+++++...+..|++.+.. ...+|+.+.
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~--~~~liLvGD 297 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPD--HARVIFLGD 297 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCT--TCEEEEEEC
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCC--CCEEEEEcc
Confidence 457999999999998888888887743 356888883
No 152
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=68.88 E-value=3.4 Score=31.49 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCC--HHHHHHHHHHhhccC-CCEEEEEe
Q psy18185 30 PGVLFIDEVHMLD--LETFTYLHRALESAI-APIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~--~~~~~~L~~~~E~~~-~~~iIlat 65 (190)
.+++++||+|.+. ......+.+++...+ .+.+++.|
T Consensus 159 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~S 197 (220)
T 1t6n_A 159 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 197 (220)
T ss_dssp CCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred CCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEE
Confidence 4799999999883 343344555554432 24455544
No 153
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=68.74 E-value=24 Score=26.47 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=45.0
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.+.++++|-- .-+.+....+..+.+..+. |++++++. . .+......+..-+.-|-.+|.+.+++..
T Consensus 51 ~~dlvllD~~-l~~~~g~~~~~~l~~~~~~~~ii~lt~~--------~----~~~~~~~~~~~ga~~~l~Kp~~~~~L~~ 117 (233)
T 1ys7_A 51 RPDAIVLDIN-MPVLDGVSVVTALRAMDNDVPVCVLSAR--------S----SVDDRVAGLEAGADDYLVKPFVLAELVA 117 (233)
T ss_dssp CCSEEEEESS-CSSSCHHHHHHHHHHTTCCCCEEEEECC--------C----TTTCCCTTTTTTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCCEEEEEcC--------C----CHHHHHHHHHcCCCEEEeCCCCHHHHHH
Confidence 3578888842 2223455566666555434 66666552 1 1333334455555667788999999999
Q ss_pred HHHHHHHh
Q psy18185 108 IIKLRANT 115 (190)
Q Consensus 108 iL~~~~~~ 115 (190)
.+......
T Consensus 118 ~i~~~~~~ 125 (233)
T 1ys7_A 118 RVKALLRR 125 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99877654
No 154
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=67.81 E-value=16 Score=32.14 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=30.9
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 146 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~ 146 (190)
.+++.+|..+.+...+.... .-.++.+..|++. ++| +..|+.++-.
T Consensus 284 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~-~~G-~PLal~~~a~ 329 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKE-CKG-SPLVVSLIGA 329 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHH-HTT-CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHH-hCC-CcHHHHHHHH
Confidence 58999999999988764311 1124567888888 465 4567776644
No 155
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=66.92 E-value=27 Score=23.70 Aligned_cols=72 Identities=17% Similarity=0.357 Sum_probs=42.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhh--ccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALE--SAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E--~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|-- .-+.+....+..+.+ ..+. |+++++.. . .+......+..-+.-|-.+|++.+++.
T Consensus 52 ~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~pii~~s~~--------~----~~~~~~~~~~~g~~~~l~kp~~~~~l~ 118 (142)
T 3cg4_A 52 SGVVLLDIM-MPGMDGWDTIRAILDNSLEQGIAIVMLTAK--------N----APDAKMIGLQEYVVDYITKPFDNEDLI 118 (142)
T ss_dssp CEEEEEESC-CSSSCHHHHHHHHHHTTCCTTEEEEEEECT--------T----CCCCSSTTGGGGEEEEEESSCCHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhhcccCCCCEEEEECC--------C----CHHHHHHHHhcCccEEEeCCCCHHHHH
Confidence 588888842 222344555555555 3333 44455442 1 133334445555666778899999999
Q ss_pred HHHHHHHH
Q psy18185 107 AIIKLRAN 114 (190)
Q Consensus 107 ~iL~~~~~ 114 (190)
..|.....
T Consensus 119 ~~i~~~~~ 126 (142)
T 3cg4_A 119 EKTTFFMG 126 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887654
No 156
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=66.23 E-value=26 Score=26.44 Aligned_cols=86 Identities=14% Similarity=-0.035 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhh-ccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALE-SAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E-~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
.+.++++| ++.-+.+.+..+..+.+ ..+. |++++++. . + +......+..-+.-|-.+|.+.+++.
T Consensus 54 ~~dlvllD-~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~--------~-~---~~~~~~~~~~Ga~~~l~Kp~~~~~L~ 120 (225)
T 3klo_A 54 SIQMLVID-YSRISDDVLTDYSSFKHISCPDAKEVIINCP--------Q-D---IEHKLLFKWNNLAGVFYIDDDMDTLI 120 (225)
T ss_dssp GCCEEEEE-GGGCCHHHHHHHHHHHHHHCTTCEEEEEEEC--------T-T---CCHHHHTTSTTEEEEEETTCCHHHHH
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHhhCCCCcEEEEECC--------c-c---hhHHHHHHHhCCCEEEecCCCHHHHH
Confidence 35788887 34445677788877776 4444 66666553 1 1 11111111222345678899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHH
Q psy18185 107 AIIKLRANTEGHVLDDEALVTL 128 (190)
Q Consensus 107 ~iL~~~~~~~~~~i~~e~l~~i 128 (190)
..++....... .+++.....+
T Consensus 121 ~~i~~~~~~~~-~~~~~~~~~~ 141 (225)
T 3klo_A 121 KGMSKILQDEM-WLTRKLAQEY 141 (225)
T ss_dssp HHHHHHHTTCC-BCCHHHHHHH
T ss_pred HHHHHHHCCCE-eeCHHHHHHH
Confidence 99987765443 4555544443
No 157
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.03 E-value=7.5 Score=34.80 Aligned_cols=70 Identities=20% Similarity=0.150 Sum_probs=48.8
Q ss_pred CeEEEEecCCCCCH----HHHHHHHHHhhccC--CCEEEEEecCCcccccCCCCCCCC-CCCChhHhhhh-hheeccCCC
Q psy18185 30 PGVLFIDEVHMLDL----ETFTYLHRALESAI--APIVIFATNRGRCLVRGTDDIISP-HGIPLDLLDRL-LIIRTTPYN 101 (190)
Q Consensus 30 ~~Il~IDEi~~L~~----~~~~~L~~~~E~~~--~~~iIlatn~~~~~~~~t~~~~~~-~~l~~~l~SR~-~~i~~~~ls 101 (190)
+-+++|||.+.+.. +....|.++...+. +.++|++|.+ +. ..++..+++-| ..+.|.--+
T Consensus 298 ~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQr------------p~~dvl~~~i~~n~~~RI~lrv~s 365 (512)
T 2ius_A 298 YIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQR------------PSVDVITGLIKANIPTRIAFTVSS 365 (512)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESC------------CCTTTSCHHHHHHCCEEEEECCSS
T ss_pred cEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecC------------CccccccHHHHhhcCCeEEEEcCC
Confidence 34888999988743 45566666666654 3678888852 12 35777788887 457787788
Q ss_pred HHHHHHHHHH
Q psy18185 102 QKDMEAIIKL 111 (190)
Q Consensus 102 ~~ei~~iL~~ 111 (190)
..|...++..
T Consensus 366 ~~dsr~ilg~ 375 (512)
T 2ius_A 366 KIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 8888887764
No 158
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=64.94 E-value=13 Score=25.49 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=40.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
.+.++++|-- .-+.+....+..+.+..+.+.+|+.|. .. .+......+..-+.-|-.+|++.+++...
T Consensus 49 ~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~--------~~---~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 116 (143)
T 3jte_A 49 SIDVVITDMK-MPKLSGMDILREIKKITPHMAVIILTG--------HG---DLDNAILAMKEGAFEYLRKPVTAQDLSIA 116 (143)
T ss_dssp TCCEEEEESC-CSSSCHHHHHHHHHHHCTTCEEEEEEC--------TT---CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCC-CCCCcHHHHHHHHHHhCCCCeEEEEEC--------CC---CHHHHHHHHHhCcceeEeCCCCHHHHHHH
Confidence 3578888732 223345556655555554433444442 11 01111122333334577789999999999
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
|....+.
T Consensus 117 l~~~~~~ 123 (143)
T 3jte_A 117 INNAINR 123 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876643
No 159
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.80 E-value=1.4e+02 Score=32.96 Aligned_cols=108 Identities=10% Similarity=0.102 Sum_probs=68.1
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhh-------c---------cCC------CEEEEEecCCcccccCCCCCCCCCCCChhH
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALE-------S---------AIA------PIVIFATNRGRCLVRGTDDIISPHGIPLDL 88 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E-------~---------~~~------~~iIlatn~~~~~~~~t~~~~~~~~l~~~l 88 (190)
.-.++||++++..+..+++...+. . +.. +.++++.| + ++..-..+|..+
T Consensus 658 aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmN------p---gY~gr~eLP~nL 728 (3245)
T 3vkg_A 658 AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMN------P---GYAGRSNLPDNL 728 (3245)
T ss_dssp CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBC------C---CGGGCCCSCHHH
T ss_pred cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeC------C---CccCcccChHHH
Confidence 467899999999988888766443 0 111 22333332 1 121235789999
Q ss_pred hhhhhheeccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh---c----C-----CCCHHHHHHHHHHHHHH
Q psy18185 89 LDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI---G----T-----RSTLRYVVQLLTPAALT 150 (190)
Q Consensus 89 ~SR~~~i~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~---a----~-----~gdlR~ai~lL~~~~~~ 150 (190)
++||..+.+..++.+.+.+++... +|+.-.......+... | | .-++|..-..|..|+.+
T Consensus 729 k~lFr~v~m~~Pd~~~i~ei~L~s---~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 729 KKLFRSMAMIKPDREMIAQVMLYS---QGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HTTEEEEECCSCCHHHHHHHHHHT---TTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEeCCCHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999887643 5654223222222221 1 1 24789877788777644
No 160
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=64.74 E-value=9.6 Score=30.38 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=26.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..+|+|||+|.++++....+.++.+.+ ..+|.++-
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~~g--i~Vi~~GL 136 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSADG--HRVIVAGL 136 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHHTT--CEEEEEEE
T ss_pred CCEEEEechhcCCHHHHHHHHHHHHCC--CEEEEeec
Confidence 469999999999999989998888543 33555553
No 161
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=64.69 E-value=12 Score=25.16 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=39.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|- +.-+.+....+.++.+.+ +. |++++++. . ........+..-+.-|-.+|++.+++.
T Consensus 50 ~dlvi~D~-~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~ga~~~l~KP~~~~~l~ 116 (128)
T 1jbe_A 50 YGFVISDW-NMPNMDGLELLKTIRAXXAMSALPVLMVTAE--------A----KKENIIAAAQAGASGYVVKPFTAATLE 116 (128)
T ss_dssp CCEEEEES-CCSSSCHHHHHHHHHC--CCTTCCEEEEESS--------C----CHHHHHHHHHTTCSEEEESSCCHHHHH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhhcccCCCcEEEEecC--------c----cHHHHHHHHHhCcCceeecCCCHHHHH
Confidence 57888873 222224455555555522 22 55555442 1 011111223333455778899999999
Q ss_pred HHHHHHHHhc
Q psy18185 107 AIIKLRANTE 116 (190)
Q Consensus 107 ~iL~~~~~~~ 116 (190)
..+.......
T Consensus 117 ~~i~~~~~~~ 126 (128)
T 1jbe_A 117 EKLNKIFEKL 126 (128)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998765543
No 162
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=63.77 E-value=7.4 Score=25.87 Aligned_cols=70 Identities=7% Similarity=0.125 Sum_probs=38.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|-- .-+.+....+.++.+..+. |++++++. . ........+..-+.-|-.+|.+.+++...
T Consensus 48 ~dlil~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (120)
T 1tmy_A 48 PDIVTMDIT-MPEMNGIDAIKEIMKIDPNAKIIVCSAM--------G----QQAMVIEAIKAGAKDFIVKPFQPSRVVEA 114 (120)
T ss_dssp CSEEEEECS-CGGGCHHHHHHHHHHHCTTCCEEEEECT--------T----CHHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCEEEEeCC-CCCCcHHHHHHHHHhhCCCCeEEEEeCC--------C----CHHHHHHHHHhCcceeEeCCCCHHHHHHH
Confidence 578888742 2223455566666555444 55555442 1 01111122333345567789999999988
Q ss_pred HHHH
Q psy18185 109 IKLR 112 (190)
Q Consensus 109 L~~~ 112 (190)
++..
T Consensus 115 i~~~ 118 (120)
T 1tmy_A 115 LNKV 118 (120)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 163
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=63.27 E-value=9.4 Score=25.77 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=40.4
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
.+.++++| ++.=+.+....+.++.+.+ +. |++++++. . .+......+..-+.-|-.+|++.+++
T Consensus 46 ~~dlvllD-~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~--------~----~~~~~~~~~~~Ga~~~l~KP~~~~~L 112 (122)
T 3gl9_A 46 TPDLIVLX-IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAK--------G----GEEDESLALSLGARKVMRKPFSPSQF 112 (122)
T ss_dssp CCSEEEEC-SCCSSSCHHHHHHHHHTSTTTTTSCEEEEESC--------C----SHHHHHHHHHTTCSEEEESSCCHHHH
T ss_pred CCCEEEEe-ccCCCCcHHHHHHHHHhcccccCCCEEEEecC--------C----chHHHHHHHhcChhhhccCCCCHHHH
Confidence 35788886 3333445666666665543 22 55555552 1 01111112222234577889999999
Q ss_pred HHHHHHHH
Q psy18185 106 EAIIKLRA 113 (190)
Q Consensus 106 ~~iL~~~~ 113 (190)
...++...
T Consensus 113 ~~~i~~~l 120 (122)
T 3gl9_A 113 IEEVKHLL 120 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98887654
No 164
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=62.12 E-value=24 Score=26.54 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
...-+..++++.+ ....++.++.+.+.+.+ + .++..+...|..+|+..|++.|+.+||..++.
T Consensus 6 P~a~V~Riik~~l--g~~rVS~dA~~~l~~~l-~---~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~ 68 (154)
T 1f1e_A 6 PKAAIERIFRQGI--GERRLSQDAKDTIYDFV-P---TMAEYVANAAKSVLDASGKKTLMEEHLKALAD 68 (154)
T ss_dssp CHHHHHHHHHTTS--TTCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccHHHHHHHhcC--CccchhHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3344455554331 22478999999999985 3 46777888888999999999999999999884
No 165
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=61.88 E-value=5 Score=35.70 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
.++||+||+|++.......+..+++.-+.+.+++.|
T Consensus 303 ~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lT 338 (590)
T 3h1t_A 303 FDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMT 338 (590)
T ss_dssp CSEEEESCCC---------CHHHHHHSTTSEEEEEE
T ss_pred cCEEEEECCccccccchHHHHHHHHhCCcceEEEec
Confidence 479999999999754334444455543334444444
No 166
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=61.87 E-value=10 Score=26.50 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhc--cCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALES--AIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~--~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
.+.++++|- +.-+.+....+..+.+. .+. |++++++. . .+......+..-+.-|-.+|++.+++
T Consensus 59 ~~dliilD~-~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l 125 (152)
T 3heb_A 59 RAQLVLLDL-NLPDMTGIDILKLVKENPHTRRSPVVILTTT--------D----DQREIQRCYDLGANVYITKPVNYENF 125 (152)
T ss_dssp CBEEEEECS-BCSSSBHHHHHHHHHHSTTTTTSCEEEEESC--------C----CHHHHHHHHHTTCSEEEECCSSHHHH
T ss_pred CCCEEEEeC-CCCCCcHHHHHHHHHhcccccCCCEEEEecC--------C----CHHHHHHHHHCCCcEEEeCCCCHHHH
Confidence 468888873 22233455666666552 223 55555552 1 01111122333345567789999999
Q ss_pred HHHHHHHHHh
Q psy18185 106 EAIIKLRANT 115 (190)
Q Consensus 106 ~~iL~~~~~~ 115 (190)
...|+..+..
T Consensus 126 ~~~i~~~~~~ 135 (152)
T 3heb_A 126 ANAIRQLGLF 135 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877653
No 167
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=61.69 E-value=28 Score=23.30 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=41.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccC--C-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAI--A-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~--~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|- +.-+.+....+..+.+.+. . |++++++. . .... ...+..-+.-|-.+|++.+++.
T Consensus 48 ~dlvi~d~-~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~--------~----~~~~-~~~~~~g~~~~l~KP~~~~~l~ 113 (133)
T 3nhm_A 48 PDVLISDV-NMDGMDGYALCGHFRSEPTLKHIPVIFVSGY--------A----PRTE-GPADQPVPDAYLVKPVKPPVLI 113 (133)
T ss_dssp CSEEEECS-SCSSSCHHHHHHHHHHSTTTTTCCEEEEESC--------C----C------TTSCCCSEEEESSCCHHHHH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhCCccCCCCEEEEeCC--------C----cHhH-HHHhhcCCceEEeccCCHHHHH
Confidence 57888873 3333455666666666432 3 55555552 1 1111 2223333445677899999999
Q ss_pred HHHHHHHHhc
Q psy18185 107 AIIKLRANTE 116 (190)
Q Consensus 107 ~iL~~~~~~~ 116 (190)
..+....+..
T Consensus 114 ~~i~~~l~~~ 123 (133)
T 3nhm_A 114 AQLHALLARA 123 (133)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9998877653
No 168
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=61.45 E-value=8.8 Score=25.36 Aligned_cols=72 Identities=10% Similarity=0.228 Sum_probs=38.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-- .-+.+....+..+.+.+..|++++++. . ........+..-+.-|-.+|++.+++...+
T Consensus 46 ~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 112 (121)
T 1zh2_A 46 PDLIILDLG-LPDGDGIEFIRDLRQWSAVPVIVLSAR--------S----EESDKIAALDAGADDYLSKPFGIGELQARL 112 (121)
T ss_dssp CSEEEEESE-ETTEEHHHHHHHHHTTCCCCEEEEESC--------C----SHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEeCC-CCCCcHHHHHHHHHhCCCCcEEEEECC--------C----CHHHHHHHHhcCCCeEEeCCcCHHHHHHHH
Confidence 478888732 112234445544444333365555552 1 011111233333456778899999999988
Q ss_pred HHHHH
Q psy18185 110 KLRAN 114 (190)
Q Consensus 110 ~~~~~ 114 (190)
+....
T Consensus 113 ~~~~~ 117 (121)
T 1zh2_A 113 RVALR 117 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 169
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=60.71 E-value=10 Score=25.64 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=40.4
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
.+.++++|-- .-+.+....+..+.+.+ +. |++++++. . .+......+..-+.-|-.+|.+.+++
T Consensus 55 ~~dlvi~d~~-~~~~~g~~~~~~l~~~~~~~~~pii~ls~~--------~----~~~~~~~~~~~g~~~~l~kP~~~~~l 121 (140)
T 1k68_A 55 RPDLILLXLN-LPKKDGREVLAEIKSDPTLKRIPVVVLSTS--------I----NEDDIFHSYDLHVNCYITKSANLSQL 121 (140)
T ss_dssp CCSEEEECSS-CSSSCHHHHHHHHHHSTTGGGSCEEEEESC--------C----CHHHHHHHHHTTCSEEEECCSSHHHH
T ss_pred CCcEEEEecC-CCcccHHHHHHHHHcCcccccccEEEEecC--------C----cHHHHHHHHHhchhheecCCCCHHHH
Confidence 4688888732 22234555666655543 22 55555552 1 01111122333345567789999999
Q ss_pred HHHHHHHHH
Q psy18185 106 EAIIKLRAN 114 (190)
Q Consensus 106 ~~iL~~~~~ 114 (190)
...+....+
T Consensus 122 ~~~i~~~~~ 130 (140)
T 1k68_A 122 FQIVKGIEE 130 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887654
No 170
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=60.15 E-value=27 Score=27.15 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCeEEEEecC------CCCCHHHHHHHHHHhhc-cCCCEEEEEec
Q psy18185 29 VPGVLFIDEV------HMLDLETFTYLHRALES-AIAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi------~~L~~~~~~~L~~~~E~-~~~~~iIlatn 66 (190)
.+.+|+|||+ +.++.+. ++.+++. |....+|+++|
T Consensus 120 ~yDlvILDEi~~al~~g~l~~~e---v~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 120 LLDMVVLDELTYMVAYDYLPLEE---VISALNARPGHQTVIITGR 161 (196)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHH---HHHHHHTSCTTCEEEEECS
T ss_pred CCCEEEEeCCCccccCCCCCHHH---HHHHHHhCcCCCEEEEECC
Confidence 3699999999 5566543 4444444 44467888885
No 171
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=57.96 E-value=9.1 Score=31.82 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCCCHH-HHHHHHHHhh-ccCCCEEEEEe
Q psy18185 29 VPGVLFIDEVHMLDLE-TFTYLHRALE-SAIAPIVIFAT 65 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~-~~~~L~~~~E-~~~~~~iIlat 65 (190)
..+++++||+|.+... ....+.+.+. ..+.+.+++.|
T Consensus 125 ~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 125 DVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp SCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 3579999999999632 3333444333 23234344434
No 172
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=57.48 E-value=49 Score=25.50 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccChH
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAK 175 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~~~ 175 (190)
+..+|++.- .+..++.+++..+..+. -+.+..+...|..++...++..+|..+|+.+..+.+...
T Consensus 9 i~kvLkqv~--p~~~iS~~Am~~m~s~v----~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpge 73 (192)
T 2jss_A 9 IYKVLKQTH--PDTGISQKSMSILNSFV----NDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGE 73 (192)
T ss_dssp HHHHHHHHC--SSCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSH
T ss_pred HHHHHcccC--CCCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH
Confidence 556666552 34569999999998882 234444555666666667778899999999998766544
No 173
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=57.44 E-value=15 Score=25.67 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=39.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.+.++++|-- .-+.+....+..+.+..+. |+++++.. . .+......+..-+.-|-.+|++.+++..
T Consensus 47 ~~dliild~~-l~~~~g~~~~~~l~~~~~~~pii~ls~~--------~----~~~~~~~~~~~g~~~~l~kP~~~~~L~~ 113 (155)
T 1qkk_A 47 FAGIVISDIR-MPGMDGLALFRKILALDPDLPMILVTGH--------G----DIPMAVQAIQDGAYDFIAKPFAADRLVQ 113 (155)
T ss_dssp CCSEEEEESC-CSSSCHHHHHHHHHHHCTTSCEEEEECG--------G----GHHHHHHHHHTTCCEEEESSCCHHHHHH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhhCCCCCEEEEECC--------C----ChHHHHHHHhcCCCeEEeCCCCHHHHHH
Confidence 3578888842 1122345555555555444 55555442 1 0111112233334556678999999998
Q ss_pred HHHHHHH
Q psy18185 108 IIKLRAN 114 (190)
Q Consensus 108 iL~~~~~ 114 (190)
.+.....
T Consensus 114 ~i~~~~~ 120 (155)
T 1qkk_A 114 SARRAEE 120 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 174
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=57.42 E-value=14 Score=25.35 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=40.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
.+.++++|- +.-+.+....+..+.+.+ +. |++++++. . .+......+..-+.-|-.+|++.+++
T Consensus 62 ~~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~--------~----~~~~~~~~~~~g~~~~l~kP~~~~~l 128 (149)
T 1k66_A 62 RPAVILLDL-NLPGTDGREVLQEIKQDEVLKKIPVVIMTTS--------S----NPKDIEICYSYSISSYIVKPLEIDRL 128 (149)
T ss_dssp CCSEEEECS-CCSSSCHHHHHHHHTTSTTGGGSCEEEEESC--------C----CHHHHHHHHHTTCSEEEECCSSHHHH
T ss_pred CCcEEEEEC-CCCCCCHHHHHHHHHhCcccCCCeEEEEeCC--------C----CHHHHHHHHHCCCCEEEeCCCCHHHH
Confidence 467888873 222334556666666653 23 55555542 1 01111122333345567789999999
Q ss_pred HHHHHHHHH
Q psy18185 106 EAIIKLRAN 114 (190)
Q Consensus 106 ~~iL~~~~~ 114 (190)
...+....+
T Consensus 129 ~~~i~~~~~ 137 (149)
T 1k66_A 129 TETVQTFIK 137 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887654
No 175
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=57.13 E-value=13 Score=27.68 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=40.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+.++.|++++++. . + +......+..-+.-|-.+|++.+++...|
T Consensus 59 ~dlvi~D~-~~p~~~g~~~~~~l~~~~~~pii~lt~~--------~-~---~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 125 (205)
T 1s8n_A 59 PDLVIMDV-KMPRRDGIDAASEIASKRIAPIVVLTAF--------S-Q---RDLVERARDAGAMAYLVKPFSISDLIPAI 125 (205)
T ss_dssp CSEEEEES-SCSSSCHHHHHHHHHHTTCSCEEEEEEG--------G-G---HHHHHTTGGGSCEEEEEESCCHHHHHHHH
T ss_pred CCEEEEeC-CCCCCChHHHHHHHHhcCCCCEEEEecC--------C-C---HHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Confidence 57888873 2222344556666655544476666663 1 0 11111122223345667899999999988
Q ss_pred HHHHH
Q psy18185 110 KLRAN 114 (190)
Q Consensus 110 ~~~~~ 114 (190)
.....
T Consensus 126 ~~~~~ 130 (205)
T 1s8n_A 126 ELAVS 130 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 176
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=57.09 E-value=19 Score=23.95 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=37.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-- .=+.+....+.++.+..+.+.+|+.|. .. +.......+..-+.-|-.+|++.+++...+
T Consensus 48 ~dlvl~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~~---~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 115 (124)
T 1srr_A 48 PDLVLLDMK-IPGMDGIEILKRMKVIDENIRVIIMTA--------YG---ELDMIQESKELGALTHFAKPFDIDEIRDAV 115 (124)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHHHCTTCEEEEEES--------SC---CHHHHHHHHHHTCCCEEESSCCHHHHHHHH
T ss_pred CCEEEEecC-CCCCCHHHHHHHHHHhCCCCCEEEEEc--------cC---chHHHHHHHhcChHhhccCCCCHHHHHHHH
Confidence 578888742 212234455555555444433444442 11 011111223333455667899999999888
Q ss_pred HHHH
Q psy18185 110 KLRA 113 (190)
Q Consensus 110 ~~~~ 113 (190)
+...
T Consensus 116 ~~~~ 119 (124)
T 1srr_A 116 KKYL 119 (124)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 7543
No 177
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=56.74 E-value=24 Score=23.86 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=41.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc--cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES--AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~--~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
+.++++|-- .-+.+....+..+.+. .+.+.+|+.|. .. ........+..-+.-|-.+|++.+++..
T Consensus 55 ~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~--------~~---~~~~~~~~~~~g~~~~l~kP~~~~~l~~ 122 (143)
T 3cnb_A 55 PDVVMLDLM-MVGMDGFSICHRIKSTPATANIIVIAMTG--------AL---TDDNVSRIVALGAETCFGKPLNFTLLEK 122 (143)
T ss_dssp CSEEEEETT-CTTSCHHHHHHHHHTSTTTTTSEEEEEES--------SC---CHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCEEEEecc-cCCCcHHHHHHHHHhCccccCCcEEEEeC--------CC---CHHHHHHHHhcCCcEEEeCCCCHHHHHH
Confidence 578888842 2223455666666652 23333444442 11 0111112233334566788999999999
Q ss_pred HHHHHHHh
Q psy18185 108 IIKLRANT 115 (190)
Q Consensus 108 iL~~~~~~ 115 (190)
.+....+.
T Consensus 123 ~i~~~~~~ 130 (143)
T 3cnb_A 123 TIKQLVEQ 130 (143)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99877654
No 178
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=56.56 E-value=20 Score=25.14 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=41.9
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
.+.++++|- +.-+.+....+..+.+.+ +. |++++++. . .+......+..-+.-|-.+|++.+++
T Consensus 51 ~~dlii~D~-~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l 117 (154)
T 3gt7_A 51 RPDLIISDV-LMPEMDGYALCRWLKGQPDLRTIPVILLTIL--------S----DPRDVVRSLECGADDFITKPCKDVVL 117 (154)
T ss_dssp CCSEEEEES-CCSSSCHHHHHHHHHHSTTTTTSCEEEEECC--------C----SHHHHHHHHHHCCSEEEESSCCHHHH
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhCCCcCCCCEEEEECC--------C----ChHHHHHHHHCCCCEEEeCCCCHHHH
Confidence 357888873 222334555555555543 22 55555542 1 01111122333345677889999999
Q ss_pred HHHHHHHHHhc
Q psy18185 106 EAIIKLRANTE 116 (190)
Q Consensus 106 ~~iL~~~~~~~ 116 (190)
...+.......
T Consensus 118 ~~~i~~~l~~~ 128 (154)
T 3gt7_A 118 ASHVKRLLSGV 128 (154)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99998877653
No 179
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=56.45 E-value=40 Score=22.28 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=41.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc--cCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES--AIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~--~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|-- .-+.+....+.++.+. .+. |++++++. . .+.. ...+..-+.-|-.+|++.+++.
T Consensus 48 ~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~--------~----~~~~-~~~~~~g~~~~l~KP~~~~~L~ 113 (127)
T 3i42_A 48 YDAVFIDLN-LPDTSGLALVKQLRALPMEKTSKFVAVSGF--------A----KNDL-GKEACELFDFYLEKPIDIASLE 113 (127)
T ss_dssp CSEEEEESB-CSSSBHHHHHHHHHHSCCSSCCEEEEEECC-------------CTTC-CHHHHHHCSEEEESSCCHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhhhccCCCCEEEEECC--------c----chhH-HHHHHHhhHHheeCCCCHHHHH
Confidence 578888842 2233456666666665 333 44444442 1 1222 4445555566888999999999
Q ss_pred HHHHHHH
Q psy18185 107 AIIKLRA 113 (190)
Q Consensus 107 ~iL~~~~ 113 (190)
+.+....
T Consensus 114 ~~i~~~~ 120 (127)
T 3i42_A 114 PILQSIE 120 (127)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988654
No 180
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=55.35 E-value=5.9 Score=25.99 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhcc
Q psy18185 125 LVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172 (190)
Q Consensus 125 l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~ 172 (190)
++.|++.+.+-+--..-+++..|+..|.+++...||.+++..++.-..
T Consensus 22 l~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 22 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp STTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 456666642235556666788888888888888999999999887654
No 181
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=55.18 E-value=16 Score=28.18 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=43.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++| ++.-+.+....+..+.+..+. |++++++. . .+......+..-+.-|-.+|.+.+++...
T Consensus 68 ~dlvllD-~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~--------~----~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~ 134 (250)
T 3r0j_A 68 PDAVILD-VXMPGMDGFGVLRRLRADGIDAPALFLTAR--------D----SLQDKIAGLTLGGDDYVTKPFSLEEVVAR 134 (250)
T ss_dssp CSEEEEE-SCCSSSCHHHHHHHHHHTTCCCCEEEEECS--------T----THHHHHHHHTSTTCEEEESSCCHHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhcCCCCCEEEEECC--------C----CHHHHHHHHHcCCcEEEeCCCCHHHHHHH
Confidence 5788887 333334566677766666544 66666552 1 01111122333345577889999999999
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
|+.....
T Consensus 135 i~~~~~~ 141 (250)
T 3r0j_A 135 LRVILRR 141 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9877654
No 182
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=54.96 E-value=29 Score=24.69 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.+.-.-++.+++. ......++.++..++++.+ + -..-.++..|...|+..+++.|+..||..++.
T Consensus 41 ~lPvaRIkrImK~--d~~~~~is~eA~v~la~a~-E---~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 41 QLPLARIKKVMKA--DPEVKMISAEAPILFAKGC-D---VFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp SSCHHHHHHHHHT--STTCCEECTHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred CCCHHHHHHHHhh--CCccccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 3455556666652 2344478899999998884 2 24445667777888888999999999999884
No 183
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=54.91 E-value=21 Score=27.79 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=44.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+.+..|++++++. . .+......+..-+.-|-.+|.+.+++...+
T Consensus 82 ~DlvllD~-~lp~~~G~~l~~~lr~~~~~~iI~lt~~--------~----~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i 148 (249)
T 3q9s_A 82 PDLILLDL-GLPDFDGGDVVQRLRKNSALPIIVLTAR--------D----TVEEKVRLLGLGADDYLIKPFHPDELLARV 148 (249)
T ss_dssp CSEEEEEC-CSCHHHHHHHHHHHHTTCCCCEEEEESC--------C----SHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEcC-CCCCCCHHHHHHHHHcCCCCCEEEEECC--------C----CHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 57888873 3334567777777776544466666552 1 011112223333456778999999999999
Q ss_pred HHHHHh
Q psy18185 110 KLRANT 115 (190)
Q Consensus 110 ~~~~~~ 115 (190)
+.....
T Consensus 149 ~~~l~~ 154 (249)
T 3q9s_A 149 KVQLRQ 154 (249)
T ss_dssp HHHHCC
T ss_pred HHHHhh
Confidence 877653
No 184
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=54.57 E-value=3.1 Score=31.15 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=19.9
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHhhccC-CCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRALESAI-APIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~E~~~-~~~iIlat 65 (190)
.+++++||+|.+... ....+..++...+ .+.+++.|
T Consensus 145 ~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 182 (207)
T 2gxq_A 145 VEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFS 182 (207)
T ss_dssp CSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEEC
T ss_pred ceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEE
Confidence 479999999987432 2233333444322 24455544
No 185
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=54.49 E-value=3.2 Score=31.63 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=11.5
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 156 ~~~iViDEah~~~~ 169 (224)
T 1qde_A 156 IKMFILDEADEMLS 169 (224)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CcEEEEcChhHHhh
Confidence 47999999998743
No 186
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=54.46 E-value=14 Score=25.69 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=39.1
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
.+.++++|-- .-+.+....+..+.+..+.+.+|+.|. .. ........+..-+.-|-.+|.+.+++...
T Consensus 50 ~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~--------~~---~~~~~~~~~~~g~~~~l~kp~~~~~L~~~ 117 (154)
T 2qsj_A 50 TVDLILLDVN-LPDAEAIDGLVRLKRFDPSNAVALISG--------ET---DHELIRAALEAGADGFIPKSADPQVLIHA 117 (154)
T ss_dssp CCSEEEECC-------CHHHHHHHHHHCTTSEEEEC----------------CHHHHHHHHTTCCBBCCTTSCHHHHHHH
T ss_pred CCCEEEEeCC-CCCCchHHHHHHHHHhCCCCeEEEEeC--------CC---CHHHHHHHHHccCCEEEeCCCCHHHHHHH
Confidence 3578888732 223345556666666544433444442 11 11111122333345567789999999999
Q ss_pred HHHHHHhc
Q psy18185 109 IKLRANTE 116 (190)
Q Consensus 109 L~~~~~~~ 116 (190)
|.......
T Consensus 118 l~~~~~~~ 125 (154)
T 2qsj_A 118 VSLILEGE 125 (154)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 98776543
No 187
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=54.30 E-value=22 Score=24.35 Aligned_cols=73 Identities=12% Similarity=0.173 Sum_probs=40.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhh--ccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALE--SAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E--~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|-- .-+.+....+..+.+ ..+. |+++++.. . ........+..-+.-|-.+|++.+++.
T Consensus 53 ~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~pii~ls~~--------~----~~~~~~~~~~~g~~~~l~kp~~~~~L~ 119 (147)
T 2zay_A 53 PHLIITEAN-MPKISGMDLFNSLKKNPQTASIPVIALSGR--------A----TAKEEAQLLDMGFIDFIAKPVNAIRLS 119 (147)
T ss_dssp CSEEEEESC-CSSSCHHHHHHHHHTSTTTTTSCEEEEESS--------C----CHHHHHHHHHHTCSEEEESSCCHHHHH
T ss_pred CCEEEEcCC-CCCCCHHHHHHHHHcCcccCCCCEEEEeCC--------C----CHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 578888842 223345566666665 2223 55555442 1 011111223333456677899999999
Q ss_pred HHHHHHHHh
Q psy18185 107 AIIKLRANT 115 (190)
Q Consensus 107 ~iL~~~~~~ 115 (190)
..|......
T Consensus 120 ~~i~~~~~~ 128 (147)
T 2zay_A 120 ARIKRVLKL 128 (147)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988876543
No 188
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=54.15 E-value=15 Score=33.47 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=12.9
Q ss_pred CeEEEEecCCCCCHH
Q psy18185 30 PGVLFIDEVHMLDLE 44 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~ 44 (190)
.++++|||+|.++..
T Consensus 278 ~~~iViDEah~~~~~ 292 (618)
T 2whx_A 278 YNLIVMDEAHFTDPC 292 (618)
T ss_dssp CSEEEEESTTCCSHH
T ss_pred CeEEEEECCCCCCcc
Confidence 489999999999754
No 189
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=53.15 E-value=17 Score=24.94 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=40.4
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc--cCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCC-CHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES--AIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY-NQKDM 105 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~--~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~l-s~~ei 105 (190)
+.++++|- +.-+.+....+..+.+. .+. |++++++. . .+......+..-+.-|-.+|. +.+++
T Consensus 52 ~dlii~D~-~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~--------~----~~~~~~~~~~~ga~~~l~Kp~~~~~~l 118 (144)
T 3kht_A 52 YDLIILDI-GLPIANGFEVMSAVRKPGANQHTPIVILTDN--------V----SDDRAKQCMAAGASSVVDKSSNNVTDF 118 (144)
T ss_dssp CSEEEECT-TCGGGCHHHHHHHHHSSSTTTTCCEEEEETT--------C----CHHHHHHHHHTTCSEEEECCTTSHHHH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcccccCCCEEEEeCC--------C----CHHHHHHHHHcCCCEEEECCCCcHHHH
Confidence 57888873 33334566666666652 223 55555442 1 011111223333455777888 99999
Q ss_pred HHHHHHHHHh
Q psy18185 106 EAIIKLRANT 115 (190)
Q Consensus 106 ~~iL~~~~~~ 115 (190)
...|....+.
T Consensus 119 ~~~i~~~l~~ 128 (144)
T 3kht_A 119 YGRIYAIFSY 128 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766543
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=52.62 E-value=5.8 Score=29.73 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=19.5
Q ss_pred eEEEEecCCCCCH--HHHH-HHHHHhhcc--CCCEEEEEec
Q psy18185 31 GVLFIDEVHMLDL--ETFT-YLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 31 ~Il~IDEi~~L~~--~~~~-~L~~~~E~~--~~~~iIlatn 66 (190)
.+|||||++.... ..+. .|..+++.. ....+|++||
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn 157 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSN 157 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 6999999977543 2233 233344321 1234777785
No 191
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=52.19 E-value=6.6 Score=34.01 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=17.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRA 52 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~ 52 (190)
.+++++||+|.+.......+++.
T Consensus 226 ~~liIiDE~H~~~~~~~~~il~~ 248 (510)
T 2oca_A 226 FGMMMNDECHLATGKSISSIISG 248 (510)
T ss_dssp EEEEEEETGGGCCHHHHHHHGGG
T ss_pred CCEEEEECCcCCCcccHHHHHHh
Confidence 48999999999987655444333
No 192
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=52.13 E-value=4.7 Score=27.76 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=37.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+..+.+.++. |++++++. . .+......+..-+.-|-.+|++.+++...
T Consensus 60 ~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 126 (135)
T 3snk_A 60 PGIVILDL-GGGDLLGKPGIVEARALWATVPLIAVSDE--------L----TSEQTRVLVRMNASDWLHKPLDGKELLNA 126 (135)
T ss_dssp CSEEEEEE-ETTGGGGSTTHHHHHGGGTTCCEEEEESC--------C----CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCEEEEeC-CCCCchHHHHHHHHHhhCCCCcEEEEeCC--------C----CHHHHHHHHHcCcHhhccCCCCHHHHHHH
Confidence 57888773 22223445556566665544 55555442 1 01111122233334567789999999888
Q ss_pred HHHH
Q psy18185 109 IKLR 112 (190)
Q Consensus 109 L~~~ 112 (190)
+...
T Consensus 127 i~~~ 130 (135)
T 3snk_A 127 VTFH 130 (135)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8754
No 193
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=52.09 E-value=14 Score=31.80 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=12.6
Q ss_pred CeEEEEecCCCCCHH
Q psy18185 30 PGVLFIDEVHMLDLE 44 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~ 44 (190)
.++++|||+|.++..
T Consensus 111 ~~~iViDEah~~~~~ 125 (451)
T 2jlq_A 111 YNLIVMDEAHFTDPC 125 (451)
T ss_dssp CSEEEEETTTCCSHH
T ss_pred CCEEEEeCCccCCcc
Confidence 489999999999653
No 194
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=52.08 E-value=6.6 Score=29.30 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCH-HHHHHHHHHhhccC-CCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDL-ETFTYLHRALESAI-APIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-~~~~~L~~~~E~~~-~~~iIlat 65 (190)
.+++++||+|.+.. .....+.+++..-+ .+.+++.|
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~S 184 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYS 184 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEE
Confidence 47999999997743 33333444444322 24455544
No 195
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=50.77 E-value=17 Score=27.64 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=40.9
Q ss_pred EEEEecCCC-CCHHHHHH-HHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCCCH-HHHHH
Q psy18185 32 VLFIDEVHM-LDLETFTY-LHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQ-KDMEA 107 (190)
Q Consensus 32 Il~IDEi~~-L~~~~~~~-L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ls~-~ei~~ 107 (190)
++.+||=-. ++.+.+.. |.+....+ +.+.++++ .|.++.++++.|+ ..+.|.++|- .++..
T Consensus 68 vI~LD~~Gk~~sS~~fA~~l~~~~~~G-~~i~FvIG--------------Ga~Gl~~~v~~rAd~~lSlS~mTfpHqL~R 132 (163)
T 1o6d_A 68 VMVMDKRGEEVSSEEFADFLKDLEMKG-KDITILIG--------------GPYGLNEEIFAKAHRVFSLSKMTFTHGMTV 132 (163)
T ss_dssp EEEEEEEEEECCHHHHHHHHHHHHHHT-CCEEEEEC--------------CTTCCCGGGGGGCSEEEECCSSCCCHHHHH
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHhcC-CeEEEEEE--------------CCCCCCHHHHHhhCceEEccCCCCcHHHHH
Confidence 777888654 45555554 44455555 43333334 2789999999999 5789999885 35554
Q ss_pred HH
Q psy18185 108 II 109 (190)
Q Consensus 108 iL 109 (190)
++
T Consensus 133 li 134 (163)
T 1o6d_A 133 LI 134 (163)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 196
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=50.41 E-value=20 Score=24.53 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=40.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|= +.=+.+....+..+.+.+ +. |++++++. . + +......+..-+.-|-.+|++.+++.
T Consensus 49 ~dlvl~D~-~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~--------~-~---~~~~~~~~~~ga~~~l~KP~~~~~L~ 115 (136)
T 3t6k_A 49 PDALICDV-LLPGIDGYTLCKRVRQHPLTKTLPILMLTAQ--------G-D---ISAKIAGFEAGANDYLAKPFEPQELV 115 (136)
T ss_dssp CSEEEEES-CCSSSCHHHHHHHHHHSGGGTTCCEEEEECT--------T-C---HHHHHHHHHHTCSEEEETTCCHHHHH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHcCCCcCCccEEEEecC--------C-C---HHHHHHHHhcCcceEEeCCCCHHHHH
Confidence 57888873 322334555555555532 22 55555552 1 0 11111223333445778999999999
Q ss_pred HHHHHHHHhc
Q psy18185 107 AIIKLRANTE 116 (190)
Q Consensus 107 ~iL~~~~~~~ 116 (190)
..++......
T Consensus 116 ~~i~~~l~~~ 125 (136)
T 3t6k_A 116 YRVKNILART 125 (136)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcc
Confidence 9998776543
No 197
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=50.41 E-value=25 Score=23.74 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=39.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-----+.+....+..+.+.+..|++++++. . ........+..-+.-|-.+|++.+++...|
T Consensus 55 ~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~--------~----~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 122 (140)
T 3cg0_A 55 PDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSS--------Q----DVETFQRAKRVNPFGYLAKPVAADTLHRSI 122 (140)
T ss_dssp CSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECC--------C----CHHHHHHHHTTCCSEEEEESCCHHHHHHHH
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecC--------C----CHHHHHHHHhcCCCEEEeCCCCHHHHHHHH
Confidence 5789998432101233444444444433365555542 1 011111223333455677899999999999
Q ss_pred HHHHHh
Q psy18185 110 KLRANT 115 (190)
Q Consensus 110 ~~~~~~ 115 (190)
....+.
T Consensus 123 ~~~~~~ 128 (140)
T 3cg0_A 123 EMAIHK 128 (140)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 876543
No 198
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.17 E-value=19 Score=22.57 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18185 119 VLDDEALVTLSEIGTRSTLRYVVQLLTPA 147 (190)
Q Consensus 119 ~i~~e~l~~i~~~a~~gdlR~ai~lL~~~ 147 (190)
.++.++++.++.. ++||+-.|++.|-..
T Consensus 22 ~ld~~~I~~vL~a-~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 22 NMDQEVIRSVLEA-QRGNKDAAINSLLQM 49 (59)
T ss_dssp SSCHHHHHHHHTT-TTTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHH-cCCCHHHHHHHHHcC
Confidence 6889999999999 799999999988643
No 199
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=49.77 E-value=5.3 Score=32.91 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=18.8
Q ss_pred CeEEEEecCCCCC--HHHHH-HHHHHhhcc--CCCEEEEEecC
Q psy18185 30 PGVLFIDEVHMLD--LETFT-YLHRALESA--IAPIVIFATNR 67 (190)
Q Consensus 30 ~~Il~IDEi~~L~--~~~~~-~L~~~~E~~--~~~~iIlatn~ 67 (190)
..+|||||++... ...+. .|..+++.. ....+|++||.
T Consensus 215 ~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 215 VPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp SSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 3699999996653 32222 222233321 11337888873
No 200
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=49.77 E-value=48 Score=25.06 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=44.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-- .-+.+....+..+.+.+..|++++++. . .+......+..-+.-|-.+|.+.+++...+
T Consensus 50 ~dlvilD~~-l~~~~g~~~~~~lr~~~~~~ii~lt~~--------~----~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i 116 (238)
T 2gwr_A 50 PDLVLLDLM-LPGMNGIDVCRVLRADSGVPIVMLTAK--------T----DTVDVVLGLESGADDYIMKPFKPKELVARV 116 (238)
T ss_dssp CSEEEEESS-CSSSCHHHHHHHHHTTCCCCEEEEEET--------T----CCSCHHHHHHTTCCEEEEESCCHHHHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCCcEEEEeCC--------C----CHHHHHHHHHCCCCEEEeCCCCHHHHHHHH
Confidence 578888742 222244555555555553466666663 1 122233344444566778899999999999
Q ss_pred HHHHHh
Q psy18185 110 KLRANT 115 (190)
Q Consensus 110 ~~~~~~ 115 (190)
......
T Consensus 117 ~~~~~~ 122 (238)
T 2gwr_A 117 RARLRR 122 (238)
T ss_dssp HHHCCC
T ss_pred HHHHhh
Confidence 876543
No 201
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=49.72 E-value=5.2 Score=30.63 Aligned_cols=14 Identities=29% Similarity=0.133 Sum_probs=11.6
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 168 ~~~lViDEah~~~~ 181 (228)
T 3iuy_A 168 ITYLVIDEADKMLD 181 (228)
T ss_dssp CCEEEECCHHHHHH
T ss_pred ceEEEEECHHHHhc
Confidence 47999999998753
No 202
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=49.68 E-value=25 Score=28.19 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=26.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcc
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRC 70 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~ 70 (190)
..+|+|||++.+.. ..-+.+.+.+. +..+|+++.++.|
T Consensus 91 ~dvViIDEaQF~~~--v~el~~~l~~~-gi~VI~~GL~~DF 128 (234)
T 2orv_A 91 VAVIGIDEGQFFPD--IVEFCEAMANA-GKTVIVAALDGTF 128 (234)
T ss_dssp CSEEEESSGGGCTT--HHHHHHHHHHT-TCEEEEECCSBCT
T ss_pred CCEEEEEchhhhhh--HHHHHHHHHhC-CCEEEEEeccccc
Confidence 47999999999975 45555666653 4568888865443
No 203
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=49.23 E-value=18 Score=27.20 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=41.3
Q ss_pred eEEEEecCCCC-CHHHHHH-HHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCCCH-HHHH
Q psy18185 31 GVLFIDEVHML-DLETFTY-LHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQ-KDME 106 (190)
Q Consensus 31 ~Il~IDEi~~L-~~~~~~~-L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ls~-~ei~ 106 (190)
.++.+||=... +.+.+.. |.+....+...+|++ + .|.++.++++.|+ ..+.|.++|- .++.
T Consensus 68 ~vi~Ld~~Gk~~sS~~fA~~l~~~~~~g~~i~FvI-G--------------G~~Gl~~~v~~rA~~~lSlS~mT~pHql~ 132 (155)
T 1ns5_A 68 RIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI-G--------------GPEGLSPACKAAAEQSWSLSALTLPHPLV 132 (155)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHHHHHCSCEEEEE-C--------------BTTBCCHHHHHHCSEEECCCSSCCCHHHH
T ss_pred cEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEE-E--------------CCCCCCHHHHHhhCceEEccCCCCcHHHH
Confidence 47889886544 5555544 444555553233443 4 1789999999999 5789998885 3555
Q ss_pred HHH
Q psy18185 107 AII 109 (190)
Q Consensus 107 ~iL 109 (190)
.++
T Consensus 133 Rli 135 (155)
T 1ns5_A 133 RVL 135 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 204
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=49.20 E-value=19 Score=33.25 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=19.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES 55 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~ 55 (190)
.++++|||+|.++......+..+++.
T Consensus 319 l~~lVlDEAH~l~~~~~~~l~~Il~~ 344 (666)
T 3o8b_A 319 YDIIICDECHSTDSTTILGIGTVLDQ 344 (666)
T ss_dssp CSEEEETTTTCCSHHHHHHHHHHHHH
T ss_pred ccEEEEccchhcCccHHHHHHHHHHh
Confidence 47999999999987655545555554
No 205
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=49.04 E-value=22 Score=32.68 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCHH---HHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLE---TFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~---~~~~L~~~~E~~~~~~iIlat 65 (190)
.++++|||+|.++.. ....+....... .+.+++.|
T Consensus 333 l~lvViDEaH~~~~~~~~~~~~l~~~~~~~-~~~vl~~S 370 (673)
T 2wv9_A 333 YNLFVMDEAHFTDPASIAARGYIATRVEAG-EAAAIFMT 370 (673)
T ss_dssp CSEEEEESTTCCCHHHHHHHHHHHHHHHTT-SCEEEEEC
T ss_pred ceEEEEeCCcccCccHHHHHHHHHHhcccc-CCcEEEEc
Confidence 489999999999653 334444444322 34444433
No 206
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=48.94 E-value=17 Score=26.06 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=39.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++| ++.=..+.+..+.++.+.+ +. |+++++++ .+ .......+..-+.-|-.+|++.+++.
T Consensus 58 ~DlillD-~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~--------~~----~~~~~~~~~~Ga~~yl~KP~~~~~L~ 124 (134)
T 3to5_A 58 FDFVVTD-WNMPGMQGIDLLKNIRADEELKHLPVLMITAE--------AK----REQIIEAAQAGVNGYIVKPFTAATLK 124 (134)
T ss_dssp CSEEEEE-SCCSSSCHHHHHHHHHHSTTTTTCCEEEEESS--------CC----HHHHHHHHHTTCCEEEESSCCHHHHH
T ss_pred CCEEEEc-CCCCCCCHHHHHHHHHhCCCCCCCeEEEEECC--------CC----HHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 5788887 4433445666666665433 22 66666553 10 11111112222345778999999999
Q ss_pred HHHHHHH
Q psy18185 107 AIIKLRA 113 (190)
Q Consensus 107 ~iL~~~~ 113 (190)
+.+.+..
T Consensus 125 ~~i~~~l 131 (134)
T 3to5_A 125 EKLDKIF 131 (134)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8887653
No 207
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=48.85 E-value=72 Score=22.94 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh--ccChHHHH
Q psy18185 117 GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL--FLDAKSSA 178 (190)
Q Consensus 117 ~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~--f~~~~~~~ 178 (190)
+..++.++...+.+.+ . -+...+...|...++..++..|+.+||..++.- |.++..-+
T Consensus 26 ~~~iS~dA~~~l~ka~-e---~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 26 SASVSKEARAAIARAA-S---VFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp TCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred cceECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 4579999999999885 2 234444456667888889999999999999843 66766543
No 208
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=48.58 E-value=6.1 Score=30.58 Aligned_cols=25 Identities=20% Similarity=-0.018 Sum_probs=16.4
Q ss_pred CeEEEEecCCCCCH----HHHHHHHHHhh
Q psy18185 30 PGVLFIDEVHMLDL----ETFTYLHRALE 54 (190)
Q Consensus 30 ~~Il~IDEi~~L~~----~~~~~L~~~~E 54 (190)
.+++++||+|.+.. .....+..++.
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 47899999999854 23344444443
No 209
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=48.33 E-value=21 Score=30.64 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.1
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.++.
T Consensus 100 l~~vViDEah~~~~ 113 (440)
T 1yks_A 100 WEVIIMDEAHFLDP 113 (440)
T ss_dssp CSEEEETTTTCCSH
T ss_pred ccEEEEECccccCc
Confidence 48999999999954
No 210
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=48.24 E-value=19 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy18185 119 VLDDEALVTLSEIGTRSTLRYVVQLLTP 146 (190)
Q Consensus 119 ~i~~e~l~~i~~~a~~gdlR~ai~lL~~ 146 (190)
.++...+..+... ++||+-.|+++|-.
T Consensus 17 ~~~~~~ik~~L~~-~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 17 AISKSKLQVHLLE-NNNDLDLTIGLLLK 43 (49)
T ss_dssp SSCHHHHHHHHHH-TTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-cCCCHHHHHHHHHh
Confidence 5788899999999 69999999998743
No 211
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=48.22 E-value=22 Score=24.74 Aligned_cols=88 Identities=10% Similarity=0.043 Sum_probs=50.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|-- .-+.+....+..+.+..+. |+++++.. . ........+..-+.-|-.+|.+.+++...
T Consensus 52 ~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~--------~----~~~~~~~~~~~g~~~~l~kp~~~~~L~~~ 118 (153)
T 3cz5_A 52 PDIVVMDLT-LPGPGGIEATRHIRQWDGAARILIFTMH--------Q----GSAFALKAFEAGASGYVTKSSDPAELVQA 118 (153)
T ss_dssp CSEEEECSC-CSSSCHHHHHHHHHHHCTTCCEEEEESC--------C----SHHHHHHHHHTTCSEEEETTSCTTHHHHH
T ss_pred CCEEEEecC-CCCCCHHHHHHHHHHhCCCCeEEEEECC--------C----CHHHHHHHHHCCCcEEEecCCCHHHHHHH
Confidence 578888742 2233455666666665444 55555442 1 01111122333345567789999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 109 IKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 109 L~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
|....... ..++++....++..
T Consensus 119 i~~~~~~~-~~~~~~~~~~l~~~ 140 (153)
T 3cz5_A 119 IEAILAGR-RAMSPDIAQEIAEE 140 (153)
T ss_dssp HHHHTTTC-CEECHHHHHHHHHH
T ss_pred HHHHHhCC-ccCChHHHHHHHhh
Confidence 98765444 35777777766554
No 212
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=48.04 E-value=28 Score=23.74 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 119 VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 119 ~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.++.++..++++.+ + -....++..|...|+..++..|+.+|+..++.
T Consensus 37 ~is~eA~~~laka~-E---~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 37 MISAEAPVLFAKAA-Q---IFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp CBCTHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccChHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 58999999999884 3 25556777787888888899999999999874
No 213
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=47.62 E-value=5.7 Score=30.58 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=19.6
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHhhccC-CCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRALESAI-APIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~E~~~-~~~iIlat 65 (190)
.+++++||+|.+... ....+.++++.-+ .+.+++.|
T Consensus 172 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 209 (236)
T 2pl3_A 172 LQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFS 209 (236)
T ss_dssp CCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEE
T ss_pred ccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEE
Confidence 479999999987432 1233344444322 24344444
No 214
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=47.57 E-value=19 Score=24.66 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=38.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-- .-+.+....+..+.+.+..|++++++. . ........+..-+.-|-.+|++.+++...+
T Consensus 49 ~dlvllD~~-l~~~~g~~l~~~l~~~~~~~ii~ls~~--------~----~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l 115 (136)
T 2qzj_A 49 YDLIFLEII-LSDGDGWTLCKKIRNVTTCPIVYMTYI--------N----EDQSILNALNSGGDDYLIKPLNLEILYAKV 115 (136)
T ss_dssp CSEEEEESE-ETTEEHHHHHHHHHTTCCCCEEEEESC--------C----CHHHHHHHHHTTCCEEEESSCCHHHHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHccCCCCCEEEEEcC--------C----CHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 578888732 212234555555555543355555442 1 011111223333456778899999999888
Q ss_pred HHHHH
Q psy18185 110 KLRAN 114 (190)
Q Consensus 110 ~~~~~ 114 (190)
+....
T Consensus 116 ~~~~~ 120 (136)
T 2qzj_A 116 KAILR 120 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 215
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=47.07 E-value=6.9 Score=30.48 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=11.0
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.+++++||+|.+.
T Consensus 175 ~~~lViDEah~~~ 187 (253)
T 1wrb_A 175 CKYIVLDEADRML 187 (253)
T ss_dssp CCEEEEETHHHHH
T ss_pred CCEEEEeCHHHHH
Confidence 3789999999885
No 216
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=46.99 E-value=32 Score=29.41 Aligned_cols=35 Identities=11% Similarity=0.383 Sum_probs=26.5
Q ss_pred eEEEEecCCCCC--HHHHHHHHHHhhccCCCEEEEEe
Q psy18185 31 GVLFIDEVHMLD--LETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~--~~~~~~L~~~~E~~~~~~iIlat 65 (190)
.++++||+|... .+.+.++...+-.+..+.++++|
T Consensus 275 ~~viiDE~a~~~~~~el~~al~~~ls~~~~~kiiiiS 311 (385)
T 2o0j_A 275 AMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITT 311 (385)
T ss_dssp SEEEEESGGGSTTHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred CEEEechhhhcCCCHHHHHHHHHHhhcCCCCcEEEEe
Confidence 589999999997 67778877777654446677767
No 217
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=46.78 E-value=8.7 Score=31.48 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCCH--HHHHHHHHHhhccC-CCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDL--ETFTYLHRALESAI-APIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~--~~~~~L~~~~E~~~-~~~iIlat 65 (190)
.+++++||+|.+.. .....+.+++...+ .+.+++.|
T Consensus 153 ~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 153 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp CSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred cCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 47899999999853 44444555554432 24444444
No 218
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=46.75 E-value=60 Score=21.41 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=38.4
Q ss_pred CeEEEEecCCCCC-HHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-h--heeccCCCHHH
Q psy18185 30 PGVLFIDEVHMLD-LETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-L--IIRTTPYNQKD 104 (190)
Q Consensus 30 ~~Il~IDEi~~L~-~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~--~i~~~~ls~~e 104 (190)
+.++++|-- .-+ .+....+..+.+..+. |++++++. . .+ ....++ . -|-.+|++.++
T Consensus 51 ~dlvi~d~~-l~~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~----~~-----~~~~~~~~~~~~l~kP~~~~~ 112 (132)
T 2rdm_A 51 IDGVVTDIR-FCQPPDGWQVARVAREIDPNMPIVYISGH--------A----AL-----EWASNGVPDSIILEKPFTSAQ 112 (132)
T ss_dssp CCEEEEESC-CSSSSCHHHHHHHHHHHCTTCCEEEEESS--------C----CT-----THHHHSCTTCEEEESSCCHHH
T ss_pred CCEEEEeee-CCCCCCHHHHHHHHHhcCCCCCEEEEeCC--------c----cH-----HHHHhhcCCcceEeCCCCHHH
Confidence 578888742 222 2345555555555444 55555442 1 01 112222 2 26678999999
Q ss_pred HHHHHHHHHHh
Q psy18185 105 MEAIIKLRANT 115 (190)
Q Consensus 105 i~~iL~~~~~~ 115 (190)
+...++.....
T Consensus 113 l~~~i~~~~~~ 123 (132)
T 2rdm_A 113 LITAVSQLLNA 123 (132)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999876644
No 219
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=46.29 E-value=8.7 Score=32.85 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=17.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHh
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRAL 53 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~ 53 (190)
.+++|+||+|.+....+..+.+.+
T Consensus 193 ~~liIvDEaH~~~~~~~~~~~~~~ 216 (472)
T 2fwr_A 193 FMLLIFDEVHHLPAESYVQIAQMS 216 (472)
T ss_dssp CSEEEEETGGGTTSTTTHHHHHTC
T ss_pred CCEEEEECCcCCCChHHHHHHHhc
Confidence 589999999999765554444443
No 220
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=46.13 E-value=30 Score=23.96 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=42.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-- .-+.+....+..+.+..+.+.+|+.|. .+ .+......+..-+.-|-.+|++.+++.+.+
T Consensus 62 ~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~~---~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 129 (152)
T 3eul_A 62 PDVALLDYR-MPGMDGAQVAAAVRSYELPTRVLLISA--------HD---EPAIVYQALQQGAAGFLLKDSTRTEIVKAV 129 (152)
T ss_dssp CSEEEEETT-CSSSCHHHHHHHHHHTTCSCEEEEEES--------CC---CHHHHHHHHHTTCSEEEETTCCHHHHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCCCeEEEEEc--------cC---CHHHHHHHHHcCCCEEEecCCCHHHHHHHH
Confidence 578888842 223345566666666554434444452 11 011111223333455778899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHH
Q psy18185 110 KLRANTEGHVLDDEALVTL 128 (190)
Q Consensus 110 ~~~~~~~~~~i~~e~l~~i 128 (190)
........ .+++.....+
T Consensus 130 ~~~~~~~~-~~~~~~~~~l 147 (152)
T 3eul_A 130 LDCAKGRD-VVAPSLVGGL 147 (152)
T ss_dssp HHHHHCC------------
T ss_pred HHHHcCCe-eeCHHHHHHH
Confidence 87765543 4555544433
No 221
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=45.85 E-value=35 Score=23.08 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=39.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhh----ccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh-hhheeccCCCHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALE----SAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR-LLIIRTTPYNQK 103 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E----~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR-~~~i~~~~ls~~ 103 (190)
.+.++++|-- .-+.+....+..+.+ ..+.+.+|+.|. .. .+......+..- +.-|-.+|++.+
T Consensus 60 ~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~--------~~---~~~~~~~~~~~g~~~~~l~KP~~~~ 127 (146)
T 3ilh_A 60 WPSIICIDIN-MPGINGWELIDLFKQHFQPMKNKSIVCLLSS--------SL---DPRDQAKAEASDWVDYYVSKPLTAN 127 (146)
T ss_dssp CCSEEEEESS-CSSSCHHHHHHHHHHHCGGGTTTCEEEEECS--------SC---CHHHHHHHHHCSSCCEEECSSCCHH
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHHhhhhccCCCeEEEEeC--------CC---ChHHHHHHHhcCCcceeeeCCCCHH
Confidence 3688888732 223345556655555 223333444442 11 011111112222 334678899999
Q ss_pred HHHHHHHHHHH
Q psy18185 104 DMEAIIKLRAN 114 (190)
Q Consensus 104 ei~~iL~~~~~ 114 (190)
++...|.....
T Consensus 128 ~L~~~i~~~~~ 138 (146)
T 3ilh_A 128 ALNNLYNKVLN 138 (146)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 222
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=45.67 E-value=46 Score=21.74 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=37.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|-- .-+.+....+..+.+.+ +. |++++++. . ........+..-+.-|-.+|++.+++.
T Consensus 46 ~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l~ 112 (124)
T 1mb3_A 46 PDLILMDIQ-LPEISGLEVTKWLKEDDDLAHIPVVAVTAF--------A----MKGDEERIREGGCEAYISKPISVVHFL 112 (124)
T ss_dssp CSEEEEESB-CSSSBHHHHHHHHHHSTTTTTSCEEEEC------------------CHHHHHHHTCSEEECSSCCHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHcCccccCCcEEEEECC--------C----CHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 578888732 21223445555555532 22 55555442 1 122222233344456778899999999
Q ss_pred HHHHHHH
Q psy18185 107 AIIKLRA 113 (190)
Q Consensus 107 ~iL~~~~ 113 (190)
..+....
T Consensus 113 ~~i~~~~ 119 (124)
T 1mb3_A 113 ETIKRLL 119 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 223
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.39 E-value=38 Score=21.74 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=34.5
Q ss_pred eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18185 96 RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~ 148 (190)
++...+.++..+.|+.. -. .++.+++++++.. ++|++-.|++-|-...
T Consensus 12 ~~~~~~~~~~v~~L~~M---FP-~lD~~vI~~vL~a-~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 12 QVRRLEFNQAMDDFKTM---FP-NMDYDIIECVLRA-NSGAVDATIDQLLQMN 59 (67)
T ss_dssp CCCCCCSHHHHHHHHHH---CS-SSCHHHHHHHHHH-HTSCHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHH---CC-CCCHHHHHHHHHH-cCCCHHHHHHHHHhcC
Confidence 34455666666666544 22 6889999999999 6999999998875543
No 224
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=45.13 E-value=31 Score=23.94 Aligned_cols=72 Identities=10% Similarity=0.110 Sum_probs=37.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhh-hhheeccCCCHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR-LLIIRTTPYNQKDMEA 107 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR-~~~i~~~~ls~~ei~~ 107 (190)
+.++++|-- .-+.+....+..+.+..+. |++++++. . .+......+..- +.-|-.+|++.+++..
T Consensus 52 ~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~--------~----~~~~~~~~~~~g~~~~~l~kP~~~~~L~~ 118 (154)
T 2rjn_A 52 VQLVISDMR-MPEMGGEVFLEQVAKSYPDIERVVISGY--------A----DAQATIDAVNRGKISRFLLKPWEDEDVFK 118 (154)
T ss_dssp CSEEEEESS-CSSSCHHHHHHHHHHHCTTSEEEEEECG--------G----GHHHHHHHHHTTCCSEEEESSCCHHHHHH
T ss_pred CCEEEEecC-CCCCCHHHHHHHHHHhCCCCcEEEEecC--------C----CHHHHHHHHhccchheeeeCCCCHHHHHH
Confidence 578888742 2222445555555555444 44444442 1 011111122222 3446678999999988
Q ss_pred HHHHHHH
Q psy18185 108 IIKLRAN 114 (190)
Q Consensus 108 iL~~~~~ 114 (190)
.|.....
T Consensus 119 ~i~~~~~ 125 (154)
T 2rjn_A 119 VVEKGLQ 125 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876653
No 225
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=44.92 E-value=26 Score=30.24 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=11.9
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.++.
T Consensus 113 ~~~iViDEaH~~~~ 126 (459)
T 2z83_A 113 YNLFVMDEAHFTDP 126 (459)
T ss_dssp CSEEEESSTTCCSH
T ss_pred CcEEEEECCccCCc
Confidence 48999999999764
No 226
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=44.66 E-value=46 Score=21.52 Aligned_cols=68 Identities=7% Similarity=0.013 Sum_probs=36.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+.++.+.++. |++++++. . + .. ...+..-+.-|-.+|++.+++...
T Consensus 46 ~dlvl~D~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~-~---~~--~~~~~~g~~~~l~Kp~~~~~l~~~ 110 (116)
T 3a10_A 46 YDLVILDI-EMPGISGLEVAGEIRKKKKDAKIILLTAY--------S-H---YR--SDMSSWAADEYVVKSFNFDELKEK 110 (116)
T ss_dssp CSEEEECS-CCSSSCHHHHHHHHHHHCTTCCEEEEESC--------G-G---GG--GCGGGGGSSEEEECCSSTHHHHHH
T ss_pred CCEEEEEC-CCCCCCHHHHHHHHHccCCCCeEEEEECC--------c-c---hH--HHHHhccccceEECCCCHHHHHHH
Confidence 57888873 22223445555555554444 55555542 1 1 11 112333334566789999999888
Q ss_pred HHHH
Q psy18185 109 IKLR 112 (190)
Q Consensus 109 L~~~ 112 (190)
+...
T Consensus 111 i~~~ 114 (116)
T 3a10_A 111 VKKL 114 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 227
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=44.32 E-value=6.8 Score=29.80 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=20.0
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHhhccC-CCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRALESAI-APIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~E~~~-~~~iIlat 65 (190)
.+++++||+|.+... ....+.++++.-+ .+.+++.|
T Consensus 151 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~S 188 (219)
T 1q0u_A 151 AHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFS 188 (219)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEE
T ss_pred ceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEe
Confidence 478999999998542 2223344444322 24455544
No 228
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=43.93 E-value=88 Score=22.55 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccChH
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAK 175 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~~~ 175 (190)
=+..+|++.- .+.-|+.+++..+-.+. + ...-.+...|+.++.-.++..||..+|+.+..+.+--.
T Consensus 38 YIyKVLKQVh--pd~gISskAm~ImnSfv-n---DiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 103 (123)
T 2nqb_D 38 YIYTVLKQVH--PDTGISSKAMSIMNSFV-N---DIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGE 103 (123)
T ss_dssp HHHHHHHHHC--TTCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHhC--CCCCcCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHH
Confidence 4677777652 34458899998887772 2 23344556666777778889999999999998877643
No 229
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=43.53 E-value=91 Score=22.58 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHhccChH
Q psy18185 104 DMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAK 175 (190)
Q Consensus 104 ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~f~~~~ 175 (190)
=+..+|++.- .+.-|+.+++..+-.+. + ...-.+...|+.++.-.++..||..+|+.+..+.+--.
T Consensus 41 YIyKVLKQVh--pd~gISskAm~ImnSfv-n---DiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 106 (126)
T 1tzy_B 41 YVYKVLKQVH--PDTGISSKAMGIMNSFV-N---DIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGE 106 (126)
T ss_dssp HHHHHHHHHC--TTCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHhC--CCCCcCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHH
Confidence 3777787652 34458899998887772 2 22344556666777778889999999999998877643
No 230
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=43.06 E-value=6.9 Score=30.13 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=10.5
Q ss_pred CeEEEEecCCCC
Q psy18185 30 PGVLFIDEVHML 41 (190)
Q Consensus 30 ~~Il~IDEi~~L 41 (190)
.+++++||+|.+
T Consensus 167 ~~~lViDEah~~ 178 (230)
T 2oxc_A 167 IRLFILDEADKL 178 (230)
T ss_dssp CCEEEESSHHHH
T ss_pred CCEEEeCCchHh
Confidence 368999999998
No 231
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=43.00 E-value=62 Score=20.50 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=38.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|-- .-+.+....+..+.+.+ +. |+++++.. . ... ..+...+.-+-.+|++.+++.
T Consensus 46 ~dlii~d~~-~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~--------~----~~~---~~~~~g~~~~l~kp~~~~~l~ 109 (119)
T 2j48_A 46 PIVILMAWP-PPDQSCLLLLQHLREHQADPHPPLVLFLGE--------P----PVD---PLLTAQASAILSKPLDPQLLL 109 (119)
T ss_dssp CSEEEEECS-TTCCTHHHHHHHHHHTCCCSSCCCEEEESS--------C----CSS---HHHHHHCSEECSSCSTTHHHH
T ss_pred CCEEEEecC-CCCCCHHHHHHHHHhccccCCCCEEEEeCC--------C----Cch---hhhhcCHHHhccCCCCHHHHH
Confidence 578888842 22234455555555553 23 55555542 1 121 455555666778899999988
Q ss_pred HHHHH
Q psy18185 107 AIIKL 111 (190)
Q Consensus 107 ~iL~~ 111 (190)
..+..
T Consensus 110 ~~l~~ 114 (119)
T 2j48_A 110 TTLQG 114 (119)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88764
No 232
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=42.99 E-value=31 Score=26.14 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=40.9
Q ss_pred EEEEecCCC-CCHHHHHHHHH-HhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhh-hheeccCCCH-HHHHH
Q psy18185 32 VLFIDEVHM-LDLETFTYLHR-ALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQ-KDMEA 107 (190)
Q Consensus 32 Il~IDEi~~-L~~~~~~~L~~-~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~-~~i~~~~ls~-~ei~~ 107 (190)
++.+||=-. ++.+.+...+. ....+.+.+.++++ .|.++.++++.|+ ..+.|.++|- .++..
T Consensus 73 vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIG--------------Ga~Gl~~~v~~rA~~~lSlS~mTfpHqL~R 138 (167)
T 1to0_A 73 VIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIG--------------GSLGLSDTVMKRADEKLSFSKMTFPHQLMR 138 (167)
T ss_dssp EEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEEC--------------CSSCCCHHHHHHCSEEEESCSSCCCHHHHH
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHhcCCceEEEEEE--------------CCCCCCHHHHHhhCcEEEccCCCCcHHHHH
Confidence 778888654 46665555554 44444232333334 2789999999999 5789999885 35554
Q ss_pred HH
Q psy18185 108 II 109 (190)
Q Consensus 108 iL 109 (190)
++
T Consensus 139 li 140 (167)
T 1to0_A 139 LI 140 (167)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 233
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=42.41 E-value=6.1 Score=30.63 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=11.0
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.+++++||+|.+.
T Consensus 174 ~~~lViDEah~~~ 186 (237)
T 3bor_A 174 IKMFVLDEADEML 186 (237)
T ss_dssp CCEEEEESHHHHH
T ss_pred CcEEEECCchHhh
Confidence 4799999999874
No 234
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=42.26 E-value=20 Score=26.72 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=40.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+..+.+..+. |++++++. . + +......+..-+.-|-.+|.+.+++...
T Consensus 47 ~dlvllD~-~l~~~~g~~~~~~lr~~~~~~~ii~ls~~--------~-~---~~~~~~~~~~ga~~~l~Kp~~~~~l~~~ 113 (225)
T 1kgs_A 47 FDVVILDI-MLPVHDGWEILKSMRESGVNTPVLMLTAL--------S-D---VEYRVKGLNMGADDYLPKPFDLRELIAR 113 (225)
T ss_dssp CSEEEEES-CCSSSCHHHHHHHHHHTTCCCCEEEEESS--------C-H---HHHHHHTCCCCCSEEEESSCCHHHHHHH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcCCCCCEEEEeCC--------C-C---HHHHHHHHhCCccEEEeCCCCHHHHHHH
Confidence 57888874 22223455666666665444 55555542 1 0 1111111222234567789999999999
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
+......
T Consensus 114 i~~~~~~ 120 (225)
T 1kgs_A 114 VRALIRR 120 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9877654
No 235
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=41.72 E-value=39 Score=25.50 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=41.3
Q ss_pred eEEEEecCCC-CCHHHHHH-HHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhh-heeccCCCH-HHHH
Q psy18185 31 GVLFIDEVHM-LDLETFTY-LHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLL-IIRTTPYNQ-KDME 106 (190)
Q Consensus 31 ~Il~IDEi~~-L~~~~~~~-L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~-~i~~~~ls~-~ei~ 106 (190)
-++.|||=.. ++.+.+.. |.+....+.+-+.++++ .|.++.++++.|+- .+.|.++|- .++.
T Consensus 76 ~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIG--------------G~~Gl~~~v~~rA~~~lSlS~mTfpHqL~ 141 (163)
T 4fak_A 76 TVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIG--------------GSNGLHKDVLQRSNYALSFSKMTFPHQMM 141 (163)
T ss_dssp EEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEC--------------BTTBCCHHHHHHCSEEEESCSSCCCHHHH
T ss_pred EEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEE--------------CCCccCHHHHHhcCceEEEecCCCCHHHH
Confidence 4777888654 45655554 44555555332333334 17889999999994 789999885 3554
Q ss_pred HHH
Q psy18185 107 AII 109 (190)
Q Consensus 107 ~iL 109 (190)
.++
T Consensus 142 Rli 144 (163)
T 4fak_A 142 RVV 144 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 236
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=40.93 E-value=22 Score=29.20 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=16.6
Q ss_pred CeEEEEecCCCCCH-HHHHHHHHHhhc
Q psy18185 30 PGVLFIDEVHMLDL-ETFTYLHRALES 55 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-~~~~~L~~~~E~ 55 (190)
.+++++||+|.+.. .....+..++..
T Consensus 164 ~~~vIiDEaH~~~~~~~~~~~~~i~~~ 190 (400)
T 1s2m_A 164 CSLFIMDEADKMLSRDFKTIIEQILSF 190 (400)
T ss_dssp CCEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred CCEEEEeCchHhhhhchHHHHHHHHHh
Confidence 47999999997754 333344444443
No 237
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=40.90 E-value=72 Score=21.60 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=44.2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
.+.++++|- +.-+.+....+..+.+..+...+|+.|. .. .+......+..-+.-|-.+|++.+++...
T Consensus 67 ~~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~ii~lt~--------~~---~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~ 134 (146)
T 4dad_A 67 AFDILMIDG-AALDTAELAAIEKLSRLHPGLTCLLVTT--------DA---SSQTLLDAMRAGVRDVLRWPLEPRALDDA 134 (146)
T ss_dssp TCSEEEEEC-TTCCHHHHHHHHHHHHHCTTCEEEEEES--------CC---CHHHHHHHHTTTEEEEEESSCCHHHHHHH
T ss_pred CCCEEEEeC-CCCCccHHHHHHHHHHhCCCCcEEEEeC--------CC---CHHHHHHHHHhCCceeEcCCCCHHHHHHH
Confidence 457888873 3445677777777777655533444442 11 01111112222234567889999999999
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
|....+.
T Consensus 135 i~~~~~~ 141 (146)
T 4dad_A 135 LKRAAAQ 141 (146)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9876644
No 238
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=40.74 E-value=49 Score=21.79 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
.+.++++|- +.=+.+....+.++.+....|++++++. .+ .......+..-+.-|-.+|++.+++...
T Consensus 46 ~~dlii~D~-~~p~~~g~~~~~~lr~~~~~~ii~~t~~--------~~----~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 112 (120)
T 3f6p_A 46 QPDLILLDI-MLPNKDGVEVCREVRKKYDMPIIMLTAK--------DS----EIDKVIGLEIGADDYVTKPFSTRELLAR 112 (120)
T ss_dssp CCSEEEEET-TSTTTHHHHHHHHHHTTCCSCEEEEEES--------SC----HHHHHHHHHTTCCEEEEESCCHHHHHHH
T ss_pred CCCEEEEeC-CCCCCCHHHHHHHHHhcCCCCEEEEECC--------CC----hHHHHHHHhCCcceeEcCCCCHHHHHHH
Confidence 357888873 3334466677766666554476666663 10 1111122333345577889999999988
Q ss_pred HHHHH
Q psy18185 109 IKLRA 113 (190)
Q Consensus 109 L~~~~ 113 (190)
++...
T Consensus 113 i~~~l 117 (120)
T 3f6p_A 113 VKANL 117 (120)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 239
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=40.36 E-value=7.6 Score=30.78 Aligned_cols=14 Identities=29% Similarity=0.162 Sum_probs=11.6
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.+..
T Consensus 202 l~~lViDEah~l~~ 215 (262)
T 3ly5_A 202 LQCLVIDEADRILD 215 (262)
T ss_dssp CCEEEECSHHHHHH
T ss_pred CCEEEEcChHHHhh
Confidence 47999999998754
No 240
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=39.71 E-value=13 Score=30.35 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=11.7
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 146 ~~~iIiDEah~~~~ 159 (395)
T 3pey_A 146 IKIFVLDEADNMLD 159 (395)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CCEEEEEChhhhcC
Confidence 47999999998754
No 241
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=39.62 E-value=21 Score=23.94 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=38.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc-cCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES-AIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~-~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
+.++++|-- .-+.+....+..+.+. ++. |++++++. . .+......+..-+.-|-.+|.+.+++..
T Consensus 49 ~dlvllD~~-l~~~~g~~~~~~l~~~~~~~~~ii~ls~~---------~---~~~~~~~~~~~ga~~~l~KP~~~~~l~~ 115 (130)
T 1dz3_A 49 PDILLLDII-MPHLDGLAVLERIRAGFEHQPNVIMLTAF---------G---QEDVTKKAVELGASYFILKPFDMENLAH 115 (130)
T ss_dssp CSEEEEESC-CSSSCHHHHHHHHHHHCSSCCEEEEEEET---------T---CHHHHHHHHHTTCEEEEECSSCCTTHHH
T ss_pred CCEEEEecC-CCCCCHHHHHHHHHhcCCCCCcEEEEecC---------C---CHHHHHHHHHcCCCEEEeCCCCHHHHHH
Confidence 578888742 2222445555555553 233 34444442 1 0111111222223456678999999999
Q ss_pred HHHHHHHh
Q psy18185 108 IIKLRANT 115 (190)
Q Consensus 108 iL~~~~~~ 115 (190)
.++.....
T Consensus 116 ~i~~~~~~ 123 (130)
T 1dz3_A 116 HIRQVYGK 123 (130)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88876543
No 242
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=39.45 E-value=50 Score=24.36 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=42.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.=+.+....+..+.+..+. |++++++. + .+......+..-+.-|-.+|.+.+++...
T Consensus 52 ~dlvllD~-~lp~~~g~~~~~~lr~~~~~~~ii~ls~~---------~---~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~ 118 (215)
T 1a04_A 52 PDLILLDL-NMPGMNGLETLDKLREKSLSGRIVVFSVS---------N---HEEDVVTALKRGADGYLLKDMEPEDLLKA 118 (215)
T ss_dssp CSEEEEET-TSTTSCHHHHHHHHHHSCCCSEEEEEECC---------C---CHHHHHHHHHTTCSEEEETTCCHHHHHHH
T ss_pred CCEEEEeC-CCCCCcHHHHHHHHHHhCCCCcEEEEECC---------C---CHHHHHHHHHcCCcEEEeCCCCHHHHHHH
Confidence 57888873 22223456666666665544 44444442 1 01111122333334577889999999999
Q ss_pred HHHHHHhc
Q psy18185 109 IKLRANTE 116 (190)
Q Consensus 109 L~~~~~~~ 116 (190)
+.......
T Consensus 119 i~~~~~~~ 126 (215)
T 1a04_A 119 LHQAAAGE 126 (215)
T ss_dssp HHHHHHSC
T ss_pred HHHHHcCC
Confidence 98776543
No 243
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=39.36 E-value=8.9 Score=29.71 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=11.6
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 177 ~~~lViDEah~l~~ 190 (242)
T 3fe2_A 177 TTYLVLDEADRMLD 190 (242)
T ss_dssp CCEEEETTHHHHHH
T ss_pred ccEEEEeCHHHHhh
Confidence 37999999998754
No 244
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=39.31 E-value=10 Score=30.56 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=19.9
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHhhcc-CCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRALESA-IAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~E~~-~~~~iIlat 65 (190)
.+++++||+|.+... ....+.+++... +.+.+++.|
T Consensus 148 ~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 148 VKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFS 185 (367)
T ss_dssp CCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEEC
T ss_pred CCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEe
Confidence 479999999987432 223344444432 224455544
No 245
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=39.24 E-value=11 Score=30.72 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=11.6
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
-++|+|||+|.+..
T Consensus 236 l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 236 IKVFVLDEADVMIA 249 (300)
T ss_dssp CSEEEETTHHHHHH
T ss_pred ceEEEEeCHHHHhh
Confidence 37999999999754
No 246
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=39.20 E-value=44 Score=22.55 Aligned_cols=73 Identities=8% Similarity=0.038 Sum_probs=38.5
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
.+.++++|-- .-..+....+..+.+.+ +.+.+|+.+. .. .+......+..-+.-|-.+|++.+++.
T Consensus 59 ~~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~ls~--------~~---~~~~~~~~~~~g~~~~l~kP~~~~~L~ 126 (143)
T 2qvg_A 59 HPKLILLDIN-IPKMNGIEFLKELRDDSSFTDIEVFVLTA--------AY---TSKDKLAFESLNIRGHLIKPLDYGEAI 126 (143)
T ss_dssp CCSEEEEETT-CTTSCHHHHHHHHTTSGGGTTCEEEEEES--------CC---CHHHHHHHTTTTCCEEEESSCCHHHHH
T ss_pred CCCEEEEecC-CCCCCHHHHHHHHHcCccccCCcEEEEeC--------CC---CHHHHHHHHhcCCCeEEECCCCHHHHH
Confidence 4688988842 22234555666665553 3333444442 11 011111122222345677899999999
Q ss_pred HHHHHHH
Q psy18185 107 AIIKLRA 113 (190)
Q Consensus 107 ~iL~~~~ 113 (190)
+.+....
T Consensus 127 ~~~~~~~ 133 (143)
T 2qvg_A 127 KLFWILQ 133 (143)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877544
No 247
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=39.19 E-value=46 Score=24.68 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=42.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
.+.++++|-- .-+.+....+..+.+..+. |++++++. + .+......+..-+.-|-.+|.+.+++..
T Consensus 43 ~~dlvllD~~-lp~~~g~~~~~~lr~~~~~~~ii~lt~~---------~---~~~~~~~~~~~ga~~~l~Kp~~~~~L~~ 109 (220)
T 1p2f_A 43 AFHVVVLDVM-LPDYSGYEICRMIKETRPETWVILLTLL---------S---DDESVLKGFEAGADDYVTKPFNPEILLA 109 (220)
T ss_dssp CCSEEEEESB-CSSSBHHHHHHHHHHHCTTSEEEEEESC---------C---SHHHHHHHHHHTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCcEEEEEcC---------C---CHHHHHHHHHcCCCEEEECCCCHHHHHH
Confidence 4578888732 2223455666666665444 44444442 1 0111122333334567788999999999
Q ss_pred HHHHHHHh
Q psy18185 108 IIKLRANT 115 (190)
Q Consensus 108 iL~~~~~~ 115 (190)
.+......
T Consensus 110 ~i~~~~~~ 117 (220)
T 1p2f_A 110 RVKRFLER 117 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 99887654
No 248
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=39.16 E-value=50 Score=21.44 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=39.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+..+.+..+. |+++++++ . .+......+..-+.-|-.+|++.+++...
T Consensus 45 ~dlil~D~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 111 (121)
T 2pl1_A 45 PDIAIVDL-GLPDEDGLSLIRRWRSNDVSLPILVLTAR--------E----SWQDKVEVLSAGADDYVTKPFHIEEVMAR 111 (121)
T ss_dssp CSEEEECS-CCSSSCHHHHHHHHHHTTCCSCEEEEESC--------C----CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCEEEEec-CCCCCCHHHHHHHHHhcCCCCCEEEEecC--------C----CHHHHHHHHHcCccceEECCCCHHHHHHH
Confidence 57888863 22223445555555555444 55555442 1 01111122333345577889999999988
Q ss_pred HHHHHH
Q psy18185 109 IKLRAN 114 (190)
Q Consensus 109 L~~~~~ 114 (190)
+.....
T Consensus 112 i~~~~~ 117 (121)
T 2pl1_A 112 MQALMR 117 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 249
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=39.03 E-value=46 Score=22.91 Aligned_cols=82 Identities=9% Similarity=-0.014 Sum_probs=45.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+..+.+.+|+.|. .. .+......+..-+.-|-.+|.+.+++...|
T Consensus 67 ~dlii~D~-~l~~~~g~~~~~~l~~~~~~~~ii~ls~--------~~---~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 134 (150)
T 4e7p_A 67 VDIAILDV-EMPVKTGLEVLEWIRSEKLETKVVVVTT--------FK---RAGYFERAVKAGVDAYVLKERSIADLMQTL 134 (150)
T ss_dssp CSEEEECS-SCSSSCHHHHHHHHHHTTCSCEEEEEES--------CC---CHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred CCEEEEeC-CCCCCcHHHHHHHHHHhCCCCeEEEEeC--------CC---CHHHHHHHHHCCCcEEEecCCCHHHHHHHH
Confidence 57888873 2223345566666666554444444442 11 011111223333455778899999999999
Q ss_pred HHHHHhcCCCCCHHH
Q psy18185 110 KLRANTEGHVLDDEA 124 (190)
Q Consensus 110 ~~~~~~~~~~i~~e~ 124 (190)
....+... .++++.
T Consensus 135 ~~~~~~~~-~~~~~~ 148 (150)
T 4e7p_A 135 HTVLEGRK-EYSPEL 148 (150)
T ss_dssp HHHHTTCC-EECHHH
T ss_pred HHHHcCCE-EcChHh
Confidence 87765433 455543
No 250
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=37.96 E-value=94 Score=22.90 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 106 EAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 106 ~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
..+++.++.. .++-+..+++.+|-+.+ + -+++.+++.+...|...++..|...|++-+..+
T Consensus 68 ~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAa-E---ayLv~LFEdanlcAiHAkRVTIm~kDiqLArri 132 (140)
T 3nqu_A 68 SRLAREICVKFTRGVDFNWQAQALLALQEAA-E---AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 132 (140)
T ss_dssp HHHHHHHHHHHHTTCCCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccceecHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHh
Confidence 3445555432 35678999999998884 4 488999999999888878888999998866543
No 251
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=37.70 E-value=28 Score=29.83 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.9
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 131 ~~~vViDEah~~~~ 144 (556)
T 4a2p_A 131 FTLMIFDECHNTTG 144 (556)
T ss_dssp CSEEEEETGGGCST
T ss_pred CCEEEEECCcccCC
Confidence 47999999999963
No 252
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=37.41 E-value=16 Score=24.27 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=38.8
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
.+.++++|- +.-+.+....+.++.+.+ +. |++++++. . + +......+..-+.-|-.+|++.+++
T Consensus 46 ~~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~--------~-~---~~~~~~~~~~ga~~~l~Kp~~~~~l 112 (127)
T 2jba_A 46 WPDLILLAW-MLPGGSGIQFIKHLRRESMTRDIPVVMLTAR--------G-E---EEDRVRGLETGADDCITKPFSPKEL 112 (127)
T ss_dssp CCSEEEEES-EETTEEHHHHHHHHHTSTTTTTSCEEEEEET--------T-H---HHHHHTTCCCSCSEEEEESCCHHHH
T ss_pred CCCEEEEec-CCCCCCHHHHHHHHHhCcccCCCCEEEEeCC--------C-C---HHHHHHHHhcCCCeEEeCCCCHHHH
Confidence 357888873 221224555666665543 23 66666552 1 0 1000011122234566789999999
Q ss_pred HHHHHHHHH
Q psy18185 106 EAIIKLRAN 114 (190)
Q Consensus 106 ~~iL~~~~~ 114 (190)
...+....+
T Consensus 113 ~~~i~~~~~ 121 (127)
T 2jba_A 113 VARIKAVMR 121 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999886654
No 253
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=37.38 E-value=46 Score=29.17 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=27.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
..+++|||+-.++...+.++...... ..+|+.+.
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~~---~~vilvGD 268 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSLC---DIAYVYGD 268 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTTC---SEEEEEEC
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCCC---CEEEEecC
Confidence 58999999999999988888776533 45777773
No 254
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=37.09 E-value=1.3e+02 Score=23.77 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=58.3
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCCCEEEEEecCCcc--------cccCCCCCCCCCCCChhHhhhhhhe
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIAPIVIFATNRGRC--------LVRGTDDIISPHGIPLDLLDRLLII 95 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~~~iIlatn~~~~--------~~~~t~~~~~~~~l~~~l~SR~~~i 95 (190)
+.+++|||+-+.+. ..+..+...++.+ .-++.++|.+-. .+.|.. ....+|..+..+|-.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--idVitT~Nlqh~esl~d~v~~itg~~---v~e~vpd~~~~~a~~v 159 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--IDVYTTVNVQHLESLNDQVRGITGVQ---VRETLPDWVLQEAFDL 159 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--CEEEEEEEGGGBGGGHHHHHHHHSCC---CCSCBCHHHHHTCSEE
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--CCEEEEccccccccHHHHHHHHcCCC---cCCcCccHHHhhCCeE
Confidence 58999999877522 2445555566654 347777774311 112221 2467788899999888
Q ss_pred eccCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCH
Q psy18185 96 RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTL 137 (190)
Q Consensus 96 ~~~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdl 137 (190)
.+=-++++++.+.| +...+-..+.+-.++.++...|++
T Consensus 160 ~lvD~~p~~l~~rl----~~g~vy~~~~~~~a~~~~f~~~nl 197 (228)
T 2r8r_A 160 VLIDLPPRELLERL----RDGKVYVPEQARAAIDAFFTQTNL 197 (228)
T ss_dssp EEBCCCHHHHHHHH----HTTCCCCTTCCHHHHHHHCCHHHH
T ss_pred EEecCCHHHHHHHH----HCCCccChhHHHHHHHhhhchhhH
Confidence 88888998865554 333332334444555555333444
No 255
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=36.97 E-value=35 Score=24.42 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+-.-+..+|+..- ..--++.++.-+++... + -.+-++|+.+...|...++..||.++++.++.
T Consensus 24 PV~ri~R~Lk~~~--~a~RV~~~A~VyLaAvL-E---yL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 24 PVGRMLRYIKKGH--PKYRIGVGAPVYMAAVL-E---YLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp CHHHHHHHHHHHS--SSCEECTHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ChHHHHHHHHcCc--cccccccchHHHHHHHH-H---HHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 3355667776531 12257888888888872 3 24667888888888888899999999998774
No 256
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=36.84 E-value=63 Score=23.41 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=26.1
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhccC--CCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESAI--APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~~--~~~iIlatn 66 (190)
++++++||.-. |+......+...+..-. +..+|++|+
T Consensus 82 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH 121 (148)
T 1f2t_B 82 ISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121 (148)
T ss_dssp CSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEC
Confidence 58999999654 67777777766665421 356888885
No 257
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=36.81 E-value=52 Score=21.24 Aligned_cols=71 Identities=14% Similarity=0.292 Sum_probs=38.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+.+..|++++++. .+ .......+..-+.-|-.+|++.+++...+
T Consensus 46 ~dlvl~D~-~l~~~~g~~~~~~l~~~~~~~ii~~s~~---------~~---~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 112 (120)
T 2a9o_A 46 PDIIILDL-MLPEIDGLEVAKTIRKTSSVPILMLSAK---------DS---EFDKVIGLELGADDYVTKPFSNRELQARV 112 (120)
T ss_dssp CSEEEECS-SCSSSCHHHHHHHHHHHCCCCEEEEESC---------CS---HHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEec-cCCCCCHHHHHHHHHhCCCCCEEEEecC---------Cc---hHHHHHHHhCCHhheEeCCCCHHHHHHHH
Confidence 57888873 2222234445544444443466666552 10 11111123333445678899999999888
Q ss_pred HHHH
Q psy18185 110 KLRA 113 (190)
Q Consensus 110 ~~~~ 113 (190)
....
T Consensus 113 ~~~~ 116 (120)
T 2a9o_A 113 KALL 116 (120)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 258
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=36.75 E-value=31 Score=30.94 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=11.9
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.+..
T Consensus 137 ~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 137 FTLMIFDECHNTSK 150 (696)
T ss_dssp CSEEEEETGGGCST
T ss_pred ccEEEEeCCCcccC
Confidence 47999999999853
No 259
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=36.32 E-value=46 Score=24.06 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
-.-+..+|+..-. ....++.++.-+++... +. .+-++|+.+...|...++..||..+++.++.
T Consensus 30 V~ri~R~Lk~~~~-a~~RV~~~A~VyLaAvL-Ey---L~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 30 VGRIHRHLKSRTT-SHGRVGATAAVYSAAIL-EY---LTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp HHHHHHHHHHTSC-SSCEECTTHHHHHHHHH-HH---HHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred hHHHHHHHHHccc-chhhccccHHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 3455666654310 01247788888887772 32 4567888888888888899999999988763
No 260
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=36.29 E-value=75 Score=23.90 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 104 DMEAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 104 ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
-...+++.++.. .++-+..+|+.+|-+.+ + -+++.+++.+...|...++..|...|++-+..
T Consensus 82 PF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAa-E---ayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 82 PFSRLAREICVKFTRGVDFNWQAQALLALQEAA-E---AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp HHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCccceecHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 345566666643 24678899999998884 4 48899999999888888888899999886654
No 261
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=36.28 E-value=27 Score=26.18 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-- .-+.+....+..+.+.+..|++++++. . + +......+..-+.-|-.+|.+.+++...+
T Consensus 49 ~dlvllD~~-l~~~~g~~~~~~l~~~~~~~ii~lt~~--------~-~---~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i 115 (230)
T 2oqr_A 49 ADIVLLDLM-LPGMSGTDVCKQLRARSSVPVIMVTAR--------D-S---EIDKVVGLELGADDYVTKPYSARELIARI 115 (230)
T ss_dssp CSEEEEESS-CSSSCHHHHHHHHHHHCSCSEEEEECC--------H-H---HHHHHHHHHHCCSCCCCSSCCHHHHHHHH
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHcCCCCCEEEEeCC--------C-c---HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 578888742 222234455555555544466666552 1 0 11111223333445677899999999999
Q ss_pred HHHHHh
Q psy18185 110 KLRANT 115 (190)
Q Consensus 110 ~~~~~~ 115 (190)
......
T Consensus 116 ~~~~~~ 121 (230)
T 2oqr_A 116 RAVLRR 121 (230)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 877654
No 262
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=36.14 E-value=52 Score=21.77 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCCh--hHhhh-----hhheeccCCCH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPL--DLLDR-----LLIIRTTPYNQ 102 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~--~l~SR-----~~~i~~~~ls~ 102 (190)
+.++++|- +.-..+....+..+.+.++.+.+|+.|. . ...... ....+ +.-|-.+|++.
T Consensus 47 ~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~-----~~~~~~~~~~~~~~~~~g~~~~l~KP~~~ 112 (135)
T 3eqz_A 47 QDIIILDL-MMPDMDGIEVIRHLAEHKSPASLILISG--------Y-----DSGVLHSAETLALSCGLNVINTFTKPINT 112 (135)
T ss_dssp TEEEEEEC-CTTTTHHHHHHHHHHHTTCCCEEEEEES--------S-----CHHHHHHHHHHHHHTTCEEEEEEESSCCH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhCCCCCCEEEEEe--------c-----cchhHHHHHHHHHHcCCCcceeeCCCCCH
Confidence 57888873 2334566777777777665544555552 1 110000 11112 23456789999
Q ss_pred HHHHHHHHHHHH
Q psy18185 103 KDMEAIIKLRAN 114 (190)
Q Consensus 103 ~ei~~iL~~~~~ 114 (190)
+++...|.....
T Consensus 113 ~~l~~~l~~~~~ 124 (135)
T 3eqz_A 113 EVLTCFLTSLSN 124 (135)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHh
Confidence 999999986543
No 263
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.93 E-value=73 Score=23.51 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=21.9
Q ss_pred Ce--EEEEecCCCCC---H----HHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PG--VLFIDEVHMLD---L----ETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~--Il~IDEi~~L~---~----~~~~~L~~~~E~~~~~~iIlatn 66 (190)
++ +++|||...+. . ...+.|.++..+. ...+|++++
T Consensus 122 ~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h 166 (235)
T 2w0m_A 122 YGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQ 166 (235)
T ss_dssp SSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC
T ss_pred CCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 46 99999999653 2 3444444444332 355777775
No 264
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=35.84 E-value=37 Score=24.38 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+-.-+..+|+..- ..--++.++.-+++... +. .+-++|+.+...|...++..||.++++.++.
T Consensus 25 PV~ri~R~Lk~~~--~a~RV~~~A~VyLaAvL-Ey---L~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 25 PVGRIHRLLRKGN--YAERVGAGAPVYLAAVM-EY---LAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp CHHHHHHHHHHTT--SCSEECTHHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cHHHHHHHHHccc--cccccchhhHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 3345666665431 12257888888888873 32 4667888888888888899999999998774
No 265
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=35.58 E-value=46 Score=22.23 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=40.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++| ++.=+.+....+..+.+.+ +. |+++++++ . .+......+..-+.-|-.+|++.+++.
T Consensus 52 ~dlvi~D-~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~L~ 118 (129)
T 3h1g_A 52 TKVLITD-WNMPEMNGLDLVKKVRSDSRFKEIPIIMITAE--------G----GKAEVITALKAGVNNYIVKPFTPQVLK 118 (129)
T ss_dssp CCEEEEC-SCCSSSCHHHHHHHHHTSTTCTTCCEEEEESC--------C----SHHHHHHHHHHTCCEEEESCCCHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCC--------C----ChHHHHHHHHcCccEEEeCCCCHHHHH
Confidence 4677776 4433445666666666543 22 55555542 1 011111223333445778999999999
Q ss_pred HHHHHHH
Q psy18185 107 AIIKLRA 113 (190)
Q Consensus 107 ~iL~~~~ 113 (190)
..++...
T Consensus 119 ~~l~~~l 125 (129)
T 3h1g_A 119 EKLEVVL 125 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988654
No 266
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=35.36 E-value=47 Score=29.35 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=30.8
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 28 LVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 28 ~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
...+++++|||+.|+.+-......++..- +-.+|+||
T Consensus 413 ~~~rlvvlDEA~kmD~~~~~~~~~l~~~l-glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARLDAMSINTLFELCERL-DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGSCHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CceeEEEEeccccCCHHHHHHHHHHHHHc-CCEEEEEC
Confidence 35689999999999998888888888863 56788888
No 267
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=34.89 E-value=1.1e+02 Score=21.21 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=44.9
Q ss_pred HHHHHHHHHHh-----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 105 MEAIIKLRANT-----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 105 i~~iL~~~~~~-----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
...+++.++.. .+.-+..+++.+|-+.+ + -+++.+++.+...|...++..|...|++-+..
T Consensus 33 F~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaa-E---ayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 33 FARLVKEVTDQFTTESEPLRWQSMAIMALQEAS-E---AYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp HHHHHHHHHHTTC-----CEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhhccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 34555555543 25678899999998883 4 48889999999888888888899999886643
No 268
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=34.89 E-value=51 Score=21.51 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+.+..|++++++. . ........+..-+.-|-.+|++.+++...+
T Consensus 48 ~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 114 (123)
T 1xhf_A 48 INLVIMDI-NLPGKNGLLLARELREQANVALMFLTGR--------D----NEVDKILGLEIGADDYITKPFNPRELTIRA 114 (123)
T ss_dssp CSEEEECS-SCSSSCHHHHHHHHHHHCCCEEEEEESC--------C----SHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEcC-CCCCCCHHHHHHHHHhCCCCcEEEEECC--------C----ChHHHHHHHhcCcceEEeCCCCHHHHHHHH
Confidence 57888863 2222234455555555533344444441 1 011111223333455778899999999888
Q ss_pred HHHH
Q psy18185 110 KLRA 113 (190)
Q Consensus 110 ~~~~ 113 (190)
+...
T Consensus 115 ~~~~ 118 (123)
T 1xhf_A 115 RNLL 118 (123)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 269
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=34.81 E-value=39 Score=24.49 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 101 NQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 101 s~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+-.-+..+|+... ..--++.++.-+++... +. .+-++|+.+...|...++..||.++++.++.
T Consensus 27 PV~rI~R~Lk~~~--~a~RVs~~A~VyLaAvL-Ey---L~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 27 PVGRVHRLLRKGN--YAERVGAGAPVYLAAVL-EY---LTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp CHHHHHHHHHHTT--SSSEECTHHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cHHHHHHHHHccc--cccccchhhHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 3445666676431 12257888888888883 32 4667888888888888999999999998774
No 270
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=34.19 E-value=47 Score=22.94 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCccccCCeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 12 EINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 12 ~I~~~v~~~~~~~~~~~~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
++.+.+++....... +|++|.|- +.......+.+..++...|.++.+-
T Consensus 40 e~~~~~~~l~~~~di----gIIlIte~--ia~~i~~~i~~~~~~~~~P~IieIP 87 (102)
T 2i4r_A 40 EIVKAVEDVLKRDDV----GVVIMKQE--YLKKLPPVLRREIDEKVEPTFVSVG 87 (102)
T ss_dssp HHHHHHHHHHHCSSE----EEEEEEGG--GSTTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHHHHHHHHhhCCCe----EEEEEeHH--HHHHHHHHHHHHHhCCCccEEEEEC
Confidence 344455554444443 88888874 3333444555555554447666655
No 271
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=33.76 E-value=53 Score=21.41 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=37.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+.+..|++++++. . ........+..-+.-|-.+|++.+++...+
T Consensus 47 ~dlvi~d~-~l~~~~g~~~~~~l~~~~~~~ii~~s~~---------~---~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i 113 (122)
T 1zgz_A 47 VDLILLDI-NLPDENGLMLTRALRERSTVGIILVTGR---------S---DRIDRIVGLEMGADDYVTKPLELRELVVRV 113 (122)
T ss_dssp CSEEEEES-CCSSSCHHHHHHHHHTTCCCEEEEEESS---------C---CHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEeC-CCCCCChHHHHHHHHhcCCCCEEEEECC---------C---ChhhHHHHHHhCHHHHccCCCCHHHHHHHH
Confidence 57888873 2222234555555555332244444441 1 011111223333456677899999998888
Q ss_pred HHHHH
Q psy18185 110 KLRAN 114 (190)
Q Consensus 110 ~~~~~ 114 (190)
+....
T Consensus 114 ~~~~~ 118 (122)
T 1zgz_A 114 KNLLW 118 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 272
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=33.59 E-value=22 Score=31.39 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=16.6
Q ss_pred CeEEEEecCCCCC----HHHHHHHHHHhh
Q psy18185 30 PGVLFIDEVHMLD----LETFTYLHRALE 54 (190)
Q Consensus 30 ~~Il~IDEi~~L~----~~~~~~L~~~~E 54 (190)
.++++|||+|.+. ......+...+.
T Consensus 176 ~~~lViDEah~l~~~gf~~~~~~i~~~l~ 204 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIGFRDDLETISGILN 204 (579)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHH
T ss_pred CCEEEEEChHHhhcCCCHHHHHHHHHHhh
Confidence 3799999999885 344444544443
No 273
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=33.50 E-value=19 Score=29.77 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCH-HHHHHHHHHhhccC-CCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDL-ETFTYLHRALESAI-APIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~-~~~~~L~~~~E~~~-~~~iIlat 65 (190)
.+++++||+|.+.. .....+.+++..-+ .+.+++.|
T Consensus 180 ~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 180 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred eeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 47999999998743 22334444444322 23444444
No 274
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=33.14 E-value=32 Score=31.26 Aligned_cols=13 Identities=46% Similarity=0.889 Sum_probs=11.2
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.++++|||+|.+.
T Consensus 139 ~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 139 VSCLVVDEIHLLD 151 (702)
T ss_dssp CCEEEETTGGGGG
T ss_pred cCEEEEeeeeecC
Confidence 4899999999974
No 275
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.94 E-value=83 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTP 146 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~ 146 (190)
.++.+-++..++.-|+. .++|..+|... +||+..|++.|..
T Consensus 37 ~d~eekVk~L~EmtG~s-eeeAr~AL~~~--ngDl~~AI~~Lle 77 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKN-QDECVIALHDC--NGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHHHTCCC-HHHHHHHHHHH--TSCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhCCC-HHHHHHHHHHc--CCCHHHHHHHHHh
Confidence 44555555555555643 34455555444 9999999988853
No 276
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=32.77 E-value=29 Score=31.23 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=10.8
Q ss_pred eEEEEecCCCCC
Q psy18185 31 GVLFIDEVHMLD 42 (190)
Q Consensus 31 ~Il~IDEi~~L~ 42 (190)
.+++|||+|.+.
T Consensus 167 ~~iViDEAH~is 178 (591)
T 2v1x_A 167 TRIAVDEVHCCS 178 (591)
T ss_dssp EEEEEETGGGGS
T ss_pred cEEEEECccccc
Confidence 799999999975
No 277
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=32.68 E-value=24 Score=30.81 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=15.9
Q ss_pred CeEEEEecCCCCC----HHHHHHHHHHh
Q psy18185 30 PGVLFIDEVHMLD----LETFTYLHRAL 53 (190)
Q Consensus 30 ~~Il~IDEi~~L~----~~~~~~L~~~~ 53 (190)
.++++|||+|.+. ......+...+
T Consensus 227 ~~~lViDEah~l~~~~f~~~~~~i~~~l 254 (563)
T 3i5x_A 227 VDYKVLDEADRLLEIGFRDDLETISGIL 254 (563)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred ceEEEEeCHHHHhccchHHHHHHHHHhh
Confidence 3799999999874 34444444444
No 278
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.58 E-value=67 Score=21.39 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=41.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc-cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES-AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~-~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+..+.+. .+.+.+|+.|. .. ........+..-+.-|-.+|++.+++...
T Consensus 53 ~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~~ii~~s~--------~~---~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 120 (136)
T 3hdv_A 53 IGLMITDL-RMQPESGLDLIRTIRASERAALSIIVVSG--------DT---DVEEAVDVMHLGVVDFLLKPVDLGKLLEL 120 (136)
T ss_dssp EEEEEECS-CCSSSCHHHHHHHHHTSTTTTCEEEEEES--------SC---CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CcEEEEec-cCCCCCHHHHHHHHHhcCCCCCCEEEEeC--------CC---ChHHHHHHHhCCcceEEeCCCCHHHHHHH
Confidence 57888873 23334566666666665 33444455452 11 01111122333345677889999999999
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
|++....
T Consensus 121 i~~~~~~ 127 (136)
T 3hdv_A 121 VNKELKI 127 (136)
T ss_dssp HHHHHC-
T ss_pred HHHHhcC
Confidence 9877643
No 279
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=32.39 E-value=16 Score=29.97 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=10.6
Q ss_pred CeEEEEecCCCC
Q psy18185 30 PGVLFIDEVHML 41 (190)
Q Consensus 30 ~~Il~IDEi~~L 41 (190)
.+++++||+|.+
T Consensus 169 ~~~iViDEah~~ 180 (412)
T 3fht_A 169 IKVFVLDEADVM 180 (412)
T ss_dssp CCEEEEETHHHH
T ss_pred CcEEEEeCHHHH
Confidence 479999999977
No 280
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=32.33 E-value=16 Score=32.17 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCCH------HHHHHHHHHhhccCC-CEEEEEe
Q psy18185 30 PGVLFIDEVHMLDL------ETFTYLHRALESAIA-PIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~------~~~~~L~~~~E~~~~-~~iIlat 65 (190)
..+++|||+|.++. .....|..+.+..+. +++.+++
T Consensus 140 ~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSA 182 (523)
T 1oyw_A 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA 182 (523)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEES
T ss_pred CCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 36899999999853 233344444444333 5555544
No 281
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=32.23 E-value=79 Score=23.55 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=25.5
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
+.++++||+.. |+......+..++.+-. ...+|++|+
T Consensus 87 ~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 87 APFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 47999999987 47766666666665432 256777775
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=32.10 E-value=1.6e+02 Score=21.94 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=22.3
Q ss_pred CeEEEEecCCCCC-------HHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHMLD-------LETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~L~-------~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
.++++||++..+. ......|.+...+. ...++++++
T Consensus 129 ~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~-~~~vi~~~h 171 (247)
T 2dr3_A 129 AKRVVVDSVTTLYINKPAMARSIILQLKRVLAGT-GCTSIFVSQ 171 (247)
T ss_dssp CCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHT-TCEEEEEEE
T ss_pred CCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 4799999999884 23334455554443 345666665
No 283
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=32.01 E-value=14 Score=28.99 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=11.4
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 187 ~~~lViDEah~l~~ 200 (249)
T 3ber_A 187 LKYLVMDEADRILN 200 (249)
T ss_dssp CCEEEECSHHHHHH
T ss_pred cCEEEEcChhhhhc
Confidence 47899999998743
No 284
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=31.59 E-value=34 Score=29.23 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=11.9
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 128 ~~~vViDEah~~~~ 141 (555)
T 3tbk_A 128 FTLMIFDECHNTSK 141 (555)
T ss_dssp CSEEEETTGGGCST
T ss_pred CCEEEEECccccCC
Confidence 47999999999953
No 285
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=31.40 E-value=61 Score=21.64 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=41.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+..+.+.+|+.|. .. .+......+..-+.-|-.+|++.+++...|
T Consensus 52 ~dlvi~d~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~~---~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i 119 (137)
T 3hdg_A 52 PDVIITDI-RMPKLGGLEMLDRIKAGGAKPYVIVISA--------FS---EMKYFIKAIELGVHLFLPKPIEPGRLMETL 119 (137)
T ss_dssp CSEEEECS-SCSSSCHHHHHHHHHHTTCCCEEEECCC--------CC---CHHHHHHHHHHCCSEECCSSCCHHHHHHHH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcCCCCcEEEEec--------Cc---ChHHHHHHHhCCcceeEcCCCCHHHHHHHH
Confidence 57888873 2223345666666666655544555552 11 011111123333345677899999999999
Q ss_pred HHHHHh
Q psy18185 110 KLRANT 115 (190)
Q Consensus 110 ~~~~~~ 115 (190)
....+.
T Consensus 120 ~~~~~~ 125 (137)
T 3hdg_A 120 EDFRHI 125 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 286
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=30.99 E-value=15 Score=30.28 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=19.8
Q ss_pred CeEEEEecCCCCCHH-HHHHHHHHhhccC-CCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLE-TFTYLHRALESAI-APIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~-~~~~L~~~~E~~~-~~~iIlat 65 (190)
.+++++||+|.+... ....+..++..-. .+.+++.|
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 221 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 221 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEEC
T ss_pred CcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEE
Confidence 479999999987432 2233444444322 24444444
No 287
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=30.91 E-value=36 Score=22.17 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+..+.+..+. |++++++. . .+......+..-+.-|-.+|++.+++...
T Consensus 48 ~dlvi~d~-~~~~~~g~~~~~~l~~~~~~~~ii~~s~~--------~----~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 114 (124)
T 1dc7_A 48 PDVLLSDI-RMPGMDGLALLKQIKQRHPMLPVIIMTAH--------S----DLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114 (124)
T ss_dssp CSCEEECS-CSSHHHHCSTHHHHHHHCTTSCCCCBCCS--------T----TSTTTTSSCTTCCCCCBCSSCCHHHHHHH
T ss_pred CCEEEEee-ecCCCCHHHHHHHHHhhCCCCCEEEEecC--------C----CHHHHHHHHhcCcceEeeCCCCHHHHHHH
Confidence 57888863 22233444555555554433 54555442 1 12223333444455677889999999999
Q ss_pred HHHHHH
Q psy18185 109 IKLRAN 114 (190)
Q Consensus 109 L~~~~~ 114 (190)
+.....
T Consensus 115 i~~~~~ 120 (124)
T 1dc7_A 115 VERAIS 120 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 288
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=30.90 E-value=25 Score=29.81 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=11.1
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.+++++||+|.+.
T Consensus 204 ~~~lVlDEah~~~ 216 (434)
T 2db3_A 204 TRFVVLDEADRML 216 (434)
T ss_dssp CCEEEEETHHHHT
T ss_pred CCeEEEccHhhhh
Confidence 3799999999974
No 289
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=30.76 E-value=70 Score=21.85 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=16.8
Q ss_pred hheeccCCCHHHHHHHHHHHH
Q psy18185 93 LIIRTTPYNQKDMEAIIKLRA 113 (190)
Q Consensus 93 ~~i~~~~ls~~ei~~iL~~~~ 113 (190)
.-|-.+|++.+++.+.|...+
T Consensus 114 ~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 114 RAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp SEEEESSCCHHHHHHHHHHHC
T ss_pred hheeeCCCCHHHHHHHHHHHH
Confidence 457789999999999887654
No 290
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.32 E-value=54 Score=22.87 Aligned_cols=66 Identities=5% Similarity=0.047 Sum_probs=43.3
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHH
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVS 168 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~ 168 (190)
...+.+++.+-+. ..|++.++++++.+++.|...++ .+-.+.+.-..++...+....|++.+.+.=
T Consensus 24 ~~Vsae~L~eEfd----efGi~~~d~VldKc~ELC~~y~l-da~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 24 MSASAQQLAEELQ----IFGLDCEEALIEKLVELCVQYGQ-NEEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CCCCHHHHHHHHH----HHTCBCCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred hhccHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3567777776665 46999999999999999633333 255555554444444566678887765543
No 291
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=30.15 E-value=42 Score=21.85 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=38.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhc---cCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALES---AIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~---~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
+.++++|---.-+.+....+..+.+. +..|++++ +. .+ +......+..-+.-|-.+|++.+++.
T Consensus 50 ~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~--------~~----~~~~~~~~~~g~~~~l~kp~~~~~l~ 116 (127)
T 2gkg_A 50 PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GN--------PD----GFAQHRKLKAHADEYVAKPVDADQLV 116 (127)
T ss_dssp CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-EC--------GG----GHHHHHHSTTCCSEEEESSCCHHHHH
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ec--------CC----chhHHHHHHhCcchheeCCCCHHHHH
Confidence 57888874311012344555555554 22366666 63 11 11111122222345677899999999
Q ss_pred HHHHHHH
Q psy18185 107 AIIKLRA 113 (190)
Q Consensus 107 ~iL~~~~ 113 (190)
..+....
T Consensus 117 ~~i~~~~ 123 (127)
T 2gkg_A 117 ERAGALI 123 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 292
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=30.07 E-value=73 Score=21.26 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=39.8
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+..+.+..+. |++++++. . ........+..-+.-|-.+|.+.+++...
T Consensus 50 ~dlvilD~-~lp~~~g~~~~~~l~~~~~~~~ii~ls~~--------~----~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~ 116 (133)
T 3b2n_A 50 PNVVILDI-EMPGMTGLEVLAEIRKKHLNIKVIIVTTF--------K----RPGYFEKAVVNDVDAYVLKERSIEELVET 116 (133)
T ss_dssp CSEEEECS-SCSSSCHHHHHHHHHHTTCSCEEEEEESC--------C----CHHHHHHHHHTTCSEEEETTSCHHHHHHH
T ss_pred CCEEEEec-CCCCCCHHHHHHHHHHHCCCCcEEEEecC--------C----CHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 57888873 22223445555555554444 44444442 1 01111223333345677889999999999
Q ss_pred HHHHHH
Q psy18185 109 IKLRAN 114 (190)
Q Consensus 109 L~~~~~ 114 (190)
++....
T Consensus 117 i~~~~~ 122 (133)
T 3b2n_A 117 INKVNN 122 (133)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 986653
No 293
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.99 E-value=79 Score=25.62 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=26.4
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
++++++||... |+......+..++.+-. +..+|++|+
T Consensus 242 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH 280 (322)
T 1e69_A 242 SPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITH 280 (322)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 47999999876 57776777776665532 356888885
No 294
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=29.91 E-value=42 Score=25.06 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
-.-+..+|+..- ..--++.++.-+++... +. .+-++|+.+...|...++..||.++++.++.
T Consensus 47 VgrI~R~LK~~~--~a~RVs~~A~VyLAAVL-EY---L~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 47 VGRVHRLLRKGN--YSERVGAGAPVYLAAVL-EY---LTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HHHHHHHHHHTT--SCSEECTTHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHccc--cccccCcCcHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 355666666431 11257788888888772 32 4667888888888888999999999998774
No 295
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=29.72 E-value=16 Score=29.89 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=11.2
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.+++++||+|.+.
T Consensus 163 ~~~vIiDEah~~~ 175 (394)
T 1fuu_A 163 IKMFILDEADEML 175 (394)
T ss_dssp CCEEEEETHHHHH
T ss_pred CcEEEEEChHHhh
Confidence 4799999999974
No 296
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=29.43 E-value=1e+02 Score=22.32 Aligned_cols=18 Identities=11% Similarity=0.195 Sum_probs=13.7
Q ss_pred cccHHHHHHHHHhccChH
Q psy18185 158 AISKQDILEVSTLFLDAK 175 (190)
Q Consensus 158 ~It~~~V~~~~~~f~~~~ 175 (190)
.||.++|..++..+++.+
T Consensus 167 ~vT~~dv~~~a~~~l~~~ 184 (197)
T 3ih6_A 167 EAKLDDVQRAAVAYLVRS 184 (197)
T ss_dssp TCCHHHHHHHHHHHSSGG
T ss_pred hCCHHHHHHHHHHhCCcc
Confidence 589999999887665543
No 297
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=29.41 E-value=77 Score=22.94 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=16.3
Q ss_pred hhheeccCCCHHHHHHHHHHHH
Q psy18185 92 LLIIRTTPYNQKDMEAIIKLRA 113 (190)
Q Consensus 92 ~~~i~~~~ls~~ei~~iL~~~~ 113 (190)
+.-|-.+|++.+++...+....
T Consensus 102 a~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 102 CHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp CSEEEESSCCGGGHHHHHHHHH
T ss_pred CCeeEecCcCHHHHHHHHHHHH
Confidence 3456778999998888887554
No 298
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=29.40 E-value=20 Score=32.60 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=11.5
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.++++|||+|.+.
T Consensus 146 ~~~vIiDE~H~l~ 158 (715)
T 2va8_A 146 VNYFVLDELHYLN 158 (715)
T ss_dssp EEEEEECSGGGGG
T ss_pred cCEEEEechhhcC
Confidence 4899999999985
No 299
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=29.06 E-value=18 Score=31.57 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=11.8
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 260 ~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 260 IKVFVLDEADNMLD 273 (508)
T ss_dssp CCEEEECCHHHHTT
T ss_pred CCEEEEechhhhcc
Confidence 58999999998854
No 300
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=28.85 E-value=56 Score=22.45 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=39.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh-hhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR-LLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR-~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+..+.+..+.+.+|+.|. ..+ .......+..- +.-|-.+|++.+++...
T Consensus 49 ~dlvi~D~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~~~---~~~~~~~~~~g~~~~~l~KP~~~~~L~~~ 116 (151)
T 3kcn_A 49 FSVIMVDM-RMPGMEGTEVIQKARLISPNSVYLMLTG--------NQD---LTTAMEAVNEGQVFRFLNKPCQMSDIKAA 116 (151)
T ss_dssp CSEEEEES-CCSSSCHHHHHHHHHHHCSSCEEEEEEC--------GGG---HHHHHHHHHHTCCSEEEESSCCHHHHHHH
T ss_pred CCEEEEeC-CCCCCcHHHHHHHHHhcCCCcEEEEEEC--------CCC---HHHHHHHHHcCCeeEEEcCCCCHHHHHHH
Confidence 47888873 2223345556655555554433444442 110 11111122222 33466789999999998
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
|....+.
T Consensus 117 i~~~l~~ 123 (151)
T 3kcn_A 117 INAGIKQ 123 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876643
No 301
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=28.76 E-value=1.3e+02 Score=19.80 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=46.2
Q ss_pred HHHHHHHHHh--cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 106 EAIIKLRANT--EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 106 ~~iL~~~~~~--~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
..+++.++.. .+.-+..+++..+-+.+ + -+++.+.+.+...|...|+..|..+|++-+..+
T Consensus 10 ~RLVRei~~~~~~~~R~q~~Al~aLQea~-E---aylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 10 QRLVREIAQDFKTDLRFQSSAVMALQEAS-E---AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHTTCSSCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 4455555543 35678899999998883 4 488899999988888888888999999876543
No 302
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=28.40 E-value=14 Score=29.38 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=11.7
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 130 ~~~iViDEah~~~~ 143 (337)
T 2z0m_A 130 FEIVIIDEADLMFE 143 (337)
T ss_dssp CSEEEEESHHHHHH
T ss_pred CcEEEEEChHHhhc
Confidence 47999999999854
No 303
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=28.15 E-value=89 Score=20.54 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=42.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhcc--CCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESA--IAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEA 107 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~ 107 (190)
+.++++|-- .-+.+....+..+.+.+ +.+.+++++. .+ .......+..-+.-|-.+|++.+++..
T Consensus 51 ~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~~~--------~~----~~~~~~~~~~g~~~~l~kP~~~~~l~~ 117 (132)
T 3lte_A 51 PAIMTLDLS-MPKLDGLDVIRSLRQNKVANQPKILVVSG--------LD----KAKLQQAVTEGADDYLEKPFDNDALLD 117 (132)
T ss_dssp CSEEEEESC-BTTBCHHHHHHHHHTTTCSSCCEEEEECC--------SC----SHHHHHHHHHTCCEEECSSCCHHHHHH
T ss_pred CCEEEEecC-CCCCCHHHHHHHHHhcCccCCCeEEEEeC--------CC----hHHHHHHHHhChHHHhhCCCCHHHHHH
Confidence 578888742 22334556666666654 2356666662 11 111112333334567789999999999
Q ss_pred HHHHHHHh
Q psy18185 108 IIKLRANT 115 (190)
Q Consensus 108 iL~~~~~~ 115 (190)
.|+.....
T Consensus 118 ~i~~~~~~ 125 (132)
T 3lte_A 118 RIHDLVNE 125 (132)
T ss_dssp HHHHHHC-
T ss_pred HHHHHcCC
Confidence 99876543
No 304
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=27.98 E-value=44 Score=22.04 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 98 TPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 98 ~~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
..++ +++...|+.+|+..|..++.++...+.+.
T Consensus 6 Rnlp-d~~~~~Lk~rAa~~GrSle~e~r~iL~~a 38 (77)
T 2bsq_E 6 RNLS-EATHNAIKFRARAAGRSTEAEIRLILDNI 38 (77)
T ss_dssp CSCC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344 46888999999999999999888777766
No 305
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=27.85 E-value=55 Score=21.87 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=41.1
Q ss_pred CeEEEEecCCC----CCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHH
Q psy18185 30 PGVLFIDEVHM----LDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKD 104 (190)
Q Consensus 30 ~~Il~IDEi~~----L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~e 104 (190)
+.++++|---. -+.+....+..+.+..+. |+++++.. . .+......+..-+.-|-.+|.+.++
T Consensus 48 ~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~--------~----~~~~~~~~~~~g~~~~l~kp~~~~~ 115 (140)
T 2qr3_A 48 PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAY--------A----DIDLAVRGIKEGASDFVVKPWDNQK 115 (140)
T ss_dssp EEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEG--------G----GHHHHHHHHHTTCCEEEEESCCHHH
T ss_pred CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECC--------C----CHHHHHHHHHcCchheeeCCCCHHH
Confidence 58898884311 022344555555554434 66666552 1 0111122333334566778999999
Q ss_pred HHHHHHHHHHh
Q psy18185 105 MEAIIKLRANT 115 (190)
Q Consensus 105 i~~iL~~~~~~ 115 (190)
+...|......
T Consensus 116 l~~~l~~~~~~ 126 (140)
T 2qr3_A 116 LLETLLNAASQ 126 (140)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999877643
No 306
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=27.83 E-value=16 Score=33.15 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=11.8
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
..|+++||+|+|..
T Consensus 205 ~~ivI~DEAHNL~d 218 (620)
T 4a15_A 205 QIVIILDEAHNLPD 218 (620)
T ss_dssp GEEEEETTGGGHHH
T ss_pred CeEEEEECCCchHH
Confidence 36999999999954
No 307
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=27.61 E-value=77 Score=26.32 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=27.1
Q ss_pred eEEEEecCC-CCCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 31 GVLFIDEVH-MLDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 31 ~Il~IDEi~-~L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
.||++||+. .|+......|...+.+-. +..+|++|+
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH 354 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTH 354 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 899999997 568877777777776543 356788885
No 308
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=27.32 E-value=1e+02 Score=25.48 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.0
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhccC-CCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESAI-APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~~-~~~iIlatn 66 (190)
++++++||+.. |+......+...+..-. ...+|++|+
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th 344 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITH 344 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEES
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEC
Confidence 58999999985 57877777777776532 246777774
No 309
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=27.16 E-value=20 Score=30.62 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=11.0
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.++|+|||+|.+.
T Consensus 236 ~~~iViDEah~~~ 248 (479)
T 3fmp_B 236 IKVFVLDEADVMI 248 (479)
T ss_dssp CCEEEECCHHHHH
T ss_pred CCEEEEECHHHHh
Confidence 4799999999873
No 310
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.00 E-value=77 Score=21.18 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEE-ecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFA-TNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDME 106 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIla-tn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~ 106 (190)
.+.++++|-- .-+.+....+..+.+..+. |+++++ +. . + ... ...+ +.-|-.+|++.+++.
T Consensus 60 ~~dlvilD~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~--------~-~---~~~-~~~~---~~~~l~KP~~~~~L~ 122 (138)
T 2b4a_A 60 TCDLLIVSDQ-LVDLSIFSLLDIVKEQTKQPSVLILTTGR--------H-E---LIE-SSEH---NLSYLQKPFAISELR 122 (138)
T ss_dssp SCSEEEEETT-CTTSCHHHHHHHHTTSSSCCEEEEEESCC--------------CCC-CSSS---CEEEEESSCCHHHHH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhhCCCCCEEEEECCC--------C-C---HHH-HHHH---HHheeeCCCCHHHHH
Confidence 3578888742 2223455666666665444 555555 42 1 1 222 2222 556677899999999
Q ss_pred HHHHHHHHhc
Q psy18185 107 AIIKLRANTE 116 (190)
Q Consensus 107 ~iL~~~~~~~ 116 (190)
..+.......
T Consensus 123 ~~i~~~~~~~ 132 (138)
T 2b4a_A 123 AAIDYHKPSM 132 (138)
T ss_dssp HHHHHTCCC-
T ss_pred HHHHHHHHhc
Confidence 9987654433
No 311
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=26.99 E-value=94 Score=21.28 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=39.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhh-hhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR-LLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR-~~~i~~~~ls~~ei~~i 108 (190)
+.++++|-- .-..+....+..+.+..+.+.+|+.|. .. ........+..- +.-|-.+|++.+++...
T Consensus 59 ~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~~---~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~ 126 (153)
T 3hv2_A 59 VDLVISAAH-LPQMDGPTLLARIHQQYPSTTRILLTG--------DP---DLKLIAKAINEGEIYRYLSKPWDDQELLLA 126 (153)
T ss_dssp CSEEEEESC-CSSSCHHHHHHHHHHHCTTSEEEEECC--------CC---CHHHHHHHHHTTCCSEEECSSCCHHHHHHH
T ss_pred CCEEEEeCC-CCcCcHHHHHHHHHhHCCCCeEEEEEC--------CC---CHHHHHHHHhCCCcceEEeCCCCHHHHHHH
Confidence 578888742 223345556666655544444455452 11 011111223333 34567789999999988
Q ss_pred HHHHHH
Q psy18185 109 IKLRAN 114 (190)
Q Consensus 109 L~~~~~ 114 (190)
|....+
T Consensus 127 i~~~l~ 132 (153)
T 3hv2_A 127 LRQALE 132 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 312
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=26.54 E-value=2.1e+02 Score=28.50 Aligned_cols=85 Identities=8% Similarity=0.142 Sum_probs=46.9
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheecc------CCCHHH
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTT------PYNQKD 104 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~------~ls~~e 104 (190)
-+|+|||++. .+....+ . ++..+|++|+ . . ......+-...+.++ +++++|
T Consensus 246 vLLVLDDVwd--~eqLe~f----~--pGSRILVTTR--------d-----~--~Va~~l~g~~vy~LeL~d~dL~LS~eE 302 (1221)
T 1vt4_I 246 CLLVLLNVQN--AKAWNAF----N--LSCKILLTTR--------F-----K--QVTDFLSAATTTHISLDHHSMTLTPDE 302 (1221)
T ss_dssp CEEEEESCCC--HHHHHHH----H--SSCCEEEECS--------C-----S--HHHHHHHHHSSCEEEECSSSSCCCHHH
T ss_pred EEEEEeCcCh--HHHHHhh----C--CCeEEEEecc--------C-----h--HHHHhcCCCeEEEecCccccCCcCHHH
Confidence 5888999998 3433333 1 3355777663 1 1 001111111255666 899999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18185 105 MEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPA 147 (190)
Q Consensus 105 i~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~ 147 (190)
..+++..+... . ..+.. .+. ++ ++.-|+.++...
T Consensus 303 A~eLF~~~~g~---~-~eeL~---~eI-Cg-GLPLALkLaGs~ 336 (1221)
T 1vt4_I 303 VKSLLLKYLDC---R-PQDLP---REV-LT-TNPRRLSIIAES 336 (1221)
T ss_dssp HHHHHHHHHCC---C-TTTHH---HHH-CC-CCHHHHHHHHHH
T ss_pred HHHHHHHHcCC---C-HHHHH---HHH-hC-CCHHHHHHHHHH
Confidence 99999877422 1 12222 234 34 577788777543
No 313
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=26.52 E-value=95 Score=25.34 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=26.8
Q ss_pred CCeEEEEecCC-CCCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 29 VPGVLFIDEVH-MLDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 29 ~~~Il~IDEi~-~L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
.+.++++||.- .|+......|...++.- ..+.+|++|+
T Consensus 272 ~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH 312 (339)
T 3qkt_A 272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312 (339)
T ss_dssp TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 46899999975 56887777776666542 1257888885
No 314
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=26.04 E-value=91 Score=21.30 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=40.7
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHhhcc--CC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHH
Q psy18185 29 VPGVLFIDEVHMLDLETFTYLHRALESA--IA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~~~~~~L~~~~E~~--~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei 105 (190)
.+.++++|- +.=+.+....+..+.+.+ +. |++++++. . ........+..-+.-|-.+|++.+++
T Consensus 61 ~~dlillD~-~lp~~~g~~l~~~l~~~~~~~~~piiils~~---------~---~~~~~~~~~~~ga~~~l~KP~~~~~L 127 (149)
T 1i3c_A 61 RPNLILLDL-NLPKKDGREVLAEIKQNPDLKRIPVVVLTTS---------H---NEDDVIASYELHVNCYLTKSRNLKDL 127 (149)
T ss_dssp CCSEEEECS-CCSSSCHHHHHHHHHHCTTTTTSCEEEEESC---------C---CHHHHHHHHHTTCSEEEECCSSHHHH
T ss_pred CCCEEEEeC-CCCCCcHHHHHHHHHhCcCcCCCeEEEEECC---------C---ChHHHHHHHHcCCcEEEECCCCHHHH
Confidence 357888873 322334555565555543 22 56666552 1 01111223333345677889999999
Q ss_pred HHHHHHHHH
Q psy18185 106 EAIIKLRAN 114 (190)
Q Consensus 106 ~~iL~~~~~ 114 (190)
...++....
T Consensus 128 ~~~i~~~~~ 136 (149)
T 1i3c_A 128 FKMVQGIES 136 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 315
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=25.96 E-value=59 Score=31.81 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=17.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRA 52 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~ 52 (190)
.++++|||+|++.......+..+
T Consensus 726 l~lvIiDEaH~~g~~~~~~l~~l 748 (1151)
T 2eyq_A 726 LGLLIVDEEHRFGVRHKERIKAM 748 (1151)
T ss_dssp EEEEEEESGGGSCHHHHHHHHHH
T ss_pred cceEEEechHhcChHHHHHHHHh
Confidence 37999999999987765555444
No 316
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=25.73 E-value=1.5e+02 Score=19.68 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=45.3
Q ss_pred HHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 106 EAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 106 ~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
..+++.++.. .+..+..+++..+-+.+ + -+++.+++.+...|...++..|..+|++-+..
T Consensus 10 ~RLVREI~~~~~~~~~~R~q~~Al~aLQea~-E---~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 10 SRLAREICVKFTRGVDFNWQAQALLALQEAA-E---AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp HHHHHHHHHHHHSSCCCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 3444545432 35678999999998883 4 48899999999888888888899999886654
No 317
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=25.70 E-value=23 Score=30.39 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=11.4
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
..++|+||+|++.
T Consensus 150 ~~~vIvDEaH~~k 162 (500)
T 1z63_A 150 WKYIVIDEAQNIK 162 (500)
T ss_dssp EEEEEEETGGGGS
T ss_pred cCEEEEeCccccC
Confidence 4799999999994
No 318
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=25.45 E-value=37 Score=28.70 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCH-HHHHHHHHHhhccCCCEEEEEe
Q psy18185 29 VPGVLFIDEVHMLDL-ETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~-~~~~~L~~~~E~~~~~~iIlat 65 (190)
.+-++++||+|.+.. +.+..+++..... +..+++++
T Consensus 279 ~~~~~~lDE~~~l~~~~~l~~~~~~~R~~-g~~~~~~~ 315 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLASLADALTKGRKA-GLRVVAGL 315 (437)
T ss_dssp CCEEEEESCGGGSCBCSSHHHHHHHCTTT-TEEEEEEE
T ss_pred ccEEEEEEcccccccchhHHHHHHHHhcc-CCEEEEEe
Confidence 346788999999954 3333333333222 25677777
No 319
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=25.26 E-value=55 Score=31.90 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=11.6
Q ss_pred eEEEEecCCCCCH
Q psy18185 31 GVLFIDEVHMLDL 43 (190)
Q Consensus 31 ~Il~IDEi~~L~~ 43 (190)
++|+|||+|++..
T Consensus 292 ~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 292 AWVIFDEVHYMRD 304 (1108)
T ss_dssp EEEEEETGGGTTS
T ss_pred CEEEEhhhhhccc
Confidence 7999999999964
No 320
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.25 E-value=75 Score=21.31 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=42.5
Q ss_pred CCeEEEEecCCCC-CHHHHHHHHHHhh--ccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHH
Q psy18185 29 VPGVLFIDEVHML-DLETFTYLHRALE--SAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKD 104 (190)
Q Consensus 29 ~~~Il~IDEi~~L-~~~~~~~L~~~~E--~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~e 104 (190)
.+.++++|- +.- +.+....+..+.+ ..+. |++++++. . .+......+..-+.-|-.+|++.++
T Consensus 50 ~~dlvi~D~-~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~ 116 (140)
T 3lua_A 50 SITLIIMDI-AFPVEKEGLEVLSAIRNNSRTANTPVIIATKS--------D----NPGYRHAALKFKVSDYILKPYPTKR 116 (140)
T ss_dssp CCSEEEECS-CSSSHHHHHHHHHHHHHSGGGTTCCEEEEESC--------C----CHHHHHHHHHSCCSEEEESSCCTTH
T ss_pred CCcEEEEeC-CCCCCCcHHHHHHHHHhCcccCCCCEEEEeCC--------C----CHHHHHHHHHcCCCEEEECCCCHHH
Confidence 457888873 333 4567777777776 3334 55555442 1 0111111222223456788999999
Q ss_pred HHHHHHHHHHh
Q psy18185 105 MEAIIKLRANT 115 (190)
Q Consensus 105 i~~iL~~~~~~ 115 (190)
+...|....+.
T Consensus 117 l~~~i~~~~~~ 127 (140)
T 3lua_A 117 LENSVRSVLKI 127 (140)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999877643
No 321
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=25.13 E-value=57 Score=19.56 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
+++.+.|...|+.+|..+...+.+.|.+.
T Consensus 16 ~eL~~~l~~~A~~~grS~N~~i~~~L~~~ 44 (53)
T 1baz_A 16 REVLDLVRKVAEENGRSVNSEIYQRVMES 44 (53)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 36888888899889888877776666554
No 322
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=25.08 E-value=53 Score=30.32 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.9
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.+..
T Consensus 372 ~~~iViDEaH~~~~ 385 (797)
T 4a2q_A 372 FTLMIFDECHNTTG 385 (797)
T ss_dssp CSEEEETTGGGCST
T ss_pred CCEEEEECccccCC
Confidence 37999999999964
No 323
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=24.75 E-value=51 Score=27.60 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=41.0
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++| ++.=..+....+.++.+..+. |++++++. . .+......+..-+.-|-.+|++.+++...
T Consensus 45 ~DlvllD-i~mP~~dG~ell~~lr~~~~~~pvI~lT~~--------~----~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ 111 (368)
T 3dzd_A 45 FPVIVLD-VWMPDGDGVNFIDFIKENSPDSVVIVITGH--------G----SVDTAVKAIKKGAYEFLEKPFSVERFLLT 111 (368)
T ss_dssp CSEEEEE-SEETTEETTTHHHHHHHHCTTCEEEEEECS--------S----CCHHHHHHHHHTCCEEEESSCCHHHHHHH
T ss_pred CCEEEEe-CCCCCCCHHHHHHHHHhhCCCCeEEEEeCC--------C----CHHHHHHHHhcCcceEEeCCCCHHHHHHH
Confidence 5788887 222222444555555555544 44444442 1 12111223333345577899999999999
Q ss_pred HHHHHHh
Q psy18185 109 IKLRANT 115 (190)
Q Consensus 109 L~~~~~~ 115 (190)
+......
T Consensus 112 i~~~l~~ 118 (368)
T 3dzd_A 112 IKHAFEE 118 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877654
No 324
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=24.62 E-value=57 Score=21.58 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=35.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCC-CHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPY-NQKDMEA 107 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~l-s~~ei~~ 107 (190)
+.++++|- +.-+.+....+..+.+.++. |++++++. . .+......+..-+.-|-.+|+ +.+++..
T Consensus 52 ~dlvi~d~-~l~~~~g~~~~~~l~~~~~~~~ii~~t~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~~l~~ 118 (130)
T 3eod_A 52 PDLMICDI-AMPRMNGLKLLEHIRNRGDQTPVLVISAT--------E----NMADIAKALRLGVEDVLLKPVKDLNRLRE 118 (130)
T ss_dssp CSEEEECC-C-----CHHHHHHHHHTTCCCCEEEEECC--------C----CHHHHHHHHHHCCSEEEESCC---CHHHH
T ss_pred CCEEEEec-CCCCCCHHHHHHHHHhcCCCCCEEEEEcC--------C----CHHHHHHHHHcCCCEEEeCCCCcHHHHHH
Confidence 57888873 22234555666666665544 55555442 1 011111122222345667888 7888888
Q ss_pred HHHHHHH
Q psy18185 108 IIKLRAN 114 (190)
Q Consensus 108 iL~~~~~ 114 (190)
.+.....
T Consensus 119 ~i~~~l~ 125 (130)
T 3eod_A 119 MVFACLY 125 (130)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 8886653
No 325
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=24.61 E-value=1.2e+02 Score=20.09 Aligned_cols=73 Identities=18% Similarity=0.113 Sum_probs=38.1
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|- +.-+.+....+..+.+..+.+.+|+.|. .. ........+..-+.-|-.+|.+.+++...+
T Consensus 48 ~dlvl~D~-~l~~~~g~~~~~~l~~~~~~~~ii~~s~--------~~---~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 115 (132)
T 3crn_A 48 FNLALFXI-KLPDMEGTELLEKAHKLRPGMKKIMVTG--------YA---SLENSVFSLNAGADAYIMKPVNPRDLLEKI 115 (132)
T ss_dssp CSEEEECS-BCSSSBHHHHHHHHHHHCTTSEEEEEES--------CC---CHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEec-CCCCCchHHHHHHHHhhCCCCcEEEEec--------cc---cHHHHHHHHhccchhhccCCCCHHHHHHHH
Confidence 57888873 2222244555555555444433444442 11 011111223333345667899999999888
Q ss_pred HHHHH
Q psy18185 110 KLRAN 114 (190)
Q Consensus 110 ~~~~~ 114 (190)
+....
T Consensus 116 ~~~~~ 120 (132)
T 3crn_A 116 KEKLD 120 (132)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76543
No 326
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=24.47 E-value=1.2e+02 Score=21.27 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=19.5
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
+.++++|- +.-+.+....+..+.+..+.|++++++
T Consensus 72 ~dlvilD~-~l~~~~g~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 72 PDVITMDI-EMPNLNGIEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp CSEEEECS-SCSSSCHHHHHHHHHHHSCCEEEEEES
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhcCCceEEEEec
Confidence 57888873 222334556666666655445445444
No 327
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=24.09 E-value=51 Score=22.48 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 119 VLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 119 ~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
.++.++.-++++.+ + -.+..+++.+...++..++..|+..|+..++.
T Consensus 29 ~vs~~A~v~la~a~-E---~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 29 KVAAAVPVIISRAL-E---LFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CBCTTHHHHHHHHH-H---HHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred ccchHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 68899999998884 3 25666778888888888889999999998773
No 328
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=23.99 E-value=1.1e+02 Score=21.83 Aligned_cols=30 Identities=7% Similarity=0.173 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 140 VVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 140 ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
+-+++..+..+++..+++.||.+||.-+++
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 344555566666677889999999988774
No 329
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=23.95 E-value=1.4e+02 Score=21.81 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hhcCCCcccHHHHHHHHH
Q psy18185 118 HVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA-KTNGRTAISKQDILEVST 169 (190)
Q Consensus 118 ~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a-~~~g~~~It~~~V~~~~~ 169 (190)
..++.++..++++.+ + -..-.++..+...+ +..++..|+..+|..++.
T Consensus 36 ~~Is~eA~vliakA~-E---lFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 36 GLITNEVLFLMTKCT-E---LFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp SCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 368999999998884 2 23444566677788 778888999999999985
No 330
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=23.95 E-value=1.3e+02 Score=23.80 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=28.4
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhccCCCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESAIAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~~~~~iIlatn 66 (190)
+.++++||.-. |+......+.+.+.+-.. ++|++|+
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtH 183 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTH 183 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEES
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEc
Confidence 58999999854 688888888888876544 7888886
No 331
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=23.87 E-value=79 Score=23.94 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCC----cccHHHHHHHHHh
Q psy18185 104 DMEAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT----AISKQDILEVSTL 170 (190)
Q Consensus 104 ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~----~It~~~V~~~~~~ 170 (190)
++.+.|+..... .|-.+++..+..-... |+..+|.|+..|...+.+....|++ .++.+++.+++.+
T Consensus 16 ~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgV-SRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~el~e~ 89 (218)
T 3sxy_A 16 KVYNLLKEMILNHELKLGEKLNVRELSEKLGI-SFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIRETIET 89 (218)
T ss_dssp HHHHHHHHHHHTTSSCTTCEECHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHHHHHHHHHH
Confidence 455555555433 3556766666666666 6889999999999888765555553 4677777766643
No 332
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.58 E-value=1.8e+02 Score=19.96 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=18.8
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEe
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlat 65 (190)
+|++|+|- +.......+.++..+...|.++.+-
T Consensus 48 gIIlIte~--~a~~i~~~i~~~~~~~~~P~Il~IP 80 (109)
T 2d00_A 48 ALVAVDEA--LLPDPERAVERLMRGRDLPVLLPIA 80 (109)
T ss_dssp SEEEEETT--TCSCHHHHHHHHTTCCCCCEEEEES
T ss_pred EEEEEeHH--HHHhhHHHHHHHHhCCCCeEEEEEC
Confidence 78888874 3334445555555343346665554
No 333
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=23.54 E-value=1.3e+02 Score=18.38 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHH
Q psy18185 99 PYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVV 141 (190)
Q Consensus 99 ~ls~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai 141 (190)
.+|.+++..+|+- -|+++++.-...+++.-.+-|+...+
T Consensus 16 ~~t~~~I~~il~a----aGveve~~~~~~~~~~L~gk~i~elI 54 (58)
T 3a1y_A 16 EINEENLKAVLQA----AGVEPEEARIKALVAALEGVNIDEVI 54 (58)
T ss_dssp CCCHHHHHHHHHH----TTCCCCHHHHHHHHHHHSSCCHHHHH
T ss_pred CCCHHHHHHHHHH----cCCCccHHHHHHHHHHHCCCCHHHHH
Confidence 5788888888863 58899999888888874344777655
No 334
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=23.41 E-value=81 Score=29.35 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=20.0
Q ss_pred CCeEEEEecCCC--CCHHHH-HHHHHHhhccCCC-EEEEE
Q psy18185 29 VPGVLFIDEVHM--LDLETF-TYLHRALESAIAP-IVIFA 64 (190)
Q Consensus 29 ~~~Il~IDEi~~--L~~~~~-~~L~~~~E~~~~~-~iIla 64 (190)
..++|+|||+|. ++.+.. ..+..+.+..+.. +++++
T Consensus 208 ~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~S 247 (773)
T 2xau_A 208 RYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMS 247 (773)
T ss_dssp TEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 358999999995 444433 3344444433333 44443
No 335
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=23.35 E-value=1.8e+02 Score=24.33 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=10.1
Q ss_pred EEEEecCCCCC
Q psy18185 32 VLFIDEVHMLD 42 (190)
Q Consensus 32 Il~IDEi~~L~ 42 (190)
++|||+++.+.
T Consensus 185 LLVIDsI~aL~ 195 (331)
T 2vhj_A 185 VIVIDSLKNVI 195 (331)
T ss_dssp EEEEECCTTTC
T ss_pred EEEEecccccc
Confidence 99999999994
No 336
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.34 E-value=56 Score=22.74 Aligned_cols=70 Identities=9% Similarity=0.093 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|- +.-+.+....+..+.+..+. |++++++. . ........+..-+.-|-.+|++.+++...
T Consensus 84 ~dliilD~-~l~~~~g~~~~~~lr~~~~~~~ii~ls~~--------~----~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 150 (157)
T 3hzh_A 84 IDIVTLXI-TMPKMDGITCLSNIMEFDKNARVIMISAL--------G----KEQLVKDCLIKGAKTFIVKPLDRAKVLQR 150 (157)
T ss_dssp CCEEEECS-SCSSSCHHHHHHHHHHHCTTCCEEEEESC--------C----CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCEEEEec-cCCCccHHHHHHHHHhhCCCCcEEEEecc--------C----cHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 47888873 22233455566666555444 54444442 1 01111112222234567789999999888
Q ss_pred HHHH
Q psy18185 109 IKLR 112 (190)
Q Consensus 109 L~~~ 112 (190)
|...
T Consensus 151 i~~~ 154 (157)
T 3hzh_A 151 VMSV 154 (157)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8754
No 337
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=23.23 E-value=76 Score=30.57 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=11.3
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.++++|||+|++.
T Consensus 193 l~lVViDEaH~l~ 205 (1010)
T 2xgj_A 193 VAWVIFDEVHYMR 205 (1010)
T ss_dssp EEEEEEETGGGGG
T ss_pred CCEEEEechhhhc
Confidence 3799999999994
No 338
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.07 E-value=1.4e+02 Score=20.01 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCCCEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAII 109 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~iL 109 (190)
+.++++|-- .-+.+....+..+.+..+.+.+|+.|. .. ........+..-+.-|-.+|++.+++...+
T Consensus 49 ~dlvllD~~-l~~~~g~~l~~~l~~~~~~~~ii~ls~--------~~---~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 116 (137)
T 3cfy_A 49 PQLIILDLK-LPDMSGEDVLDWINQNDIPTSVIIATA--------HG---SVDLAVNLIQKGAEDFLEKPINADRLKTSV 116 (137)
T ss_dssp CSEEEECSB-CSSSBHHHHHHHHHHTTCCCEEEEEES--------SC---CHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCEEEEecC-CCCCCHHHHHHHHHhcCCCCCEEEEEe--------cC---cHHHHHHHHHCCccEEEeCCCCHHHHHHHH
Confidence 478888732 212234455555555444433444442 11 011111122333345677899999999888
Q ss_pred HHHH
Q psy18185 110 KLRA 113 (190)
Q Consensus 110 ~~~~ 113 (190)
....
T Consensus 117 ~~~~ 120 (137)
T 3cfy_A 117 ALHL 120 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 339
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=22.81 E-value=80 Score=26.48 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=40.3
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHhhccCC-CEEEEEecCCcccccCCCCCCCCCCCChhHhhhhhheeccCCCHHHHHHH
Q psy18185 30 PGVLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108 (190)
Q Consensus 30 ~~Il~IDEi~~L~~~~~~~L~~~~E~~~~-~~iIlatn~~~~~~~~t~~~~~~~~l~~~l~SR~~~i~~~~ls~~ei~~i 108 (190)
+.++++|= +.=+.+....+.++.+..+. |++++++. . ........++.-+.-|-.+|.+.+++...
T Consensus 45 ~DlvllD~-~mp~~dG~ell~~lr~~~~~~pvIvlT~~--------~----~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~ 111 (387)
T 1ny5_A 45 FNVVLLDL-LLPDVNGLEILKWIKERSPETEVIVITGH--------G----TIKTAVEAMKMGAYDFLTKPCMLEEIELT 111 (387)
T ss_dssp CSEEEEES-BCSSSBHHHHHHHHHHHCTTSEEEEEEET--------T----CHHHHHHHHTTTCCEEEEESCCHHHHHHH
T ss_pred CCEEEEeC-CCCCCCHHHHHHHHHhhCCCCcEEEEeCC--------C----CHHHHHHHHhcCceEEecCCCCHHHHHHH
Confidence 57888873 22233456666666665544 55555442 1 01111122333344566789999999888
Q ss_pred HHHHHH
Q psy18185 109 IKLRAN 114 (190)
Q Consensus 109 L~~~~~ 114 (190)
+....+
T Consensus 112 i~~~l~ 117 (387)
T 1ny5_A 112 INKAIE 117 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876553
No 340
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=22.71 E-value=1e+02 Score=27.41 Aligned_cols=35 Identities=11% Similarity=0.373 Sum_probs=25.1
Q ss_pred eEEEEecCCCCCH--HHHHHHHHHhhccCCCEEEEEe
Q psy18185 31 GVLFIDEVHMLDL--ETFTYLHRALESAIAPIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~--~~~~~L~~~~E~~~~~~iIlat 65 (190)
.++++||+|.... +...++...+-.+..+.++++|
T Consensus 275 ~~~iiDE~~~~~~~~~l~~~~~~~l~~~~~~~ii~is 311 (592)
T 3cpe_A 275 AMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITT 311 (592)
T ss_dssp SEEEEETGGGCTTHHHHHHHHHHHHSSSSCCEEEEEE
T ss_pred ceEEEehhccCCchhHHHHHHHHHhccCCCceEEEEe
Confidence 5889999999965 6667776666553346677767
No 341
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=22.46 E-value=1e+02 Score=24.22 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=25.5
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhcc--C-CCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESA--I-APIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~--~-~~~iIlatn 66 (190)
+.++++||.-. |+......+.+.+.+- . +..+|++|+
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 147 CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 58999999875 6776666666655432 1 356888885
No 342
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=22.46 E-value=15 Score=32.64 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=12.4
Q ss_pred CCeEEEEecCCCCCH
Q psy18185 29 VPGVLFIDEVHMLDL 43 (190)
Q Consensus 29 ~~~Il~IDEi~~L~~ 43 (190)
...+++|||||.|..
T Consensus 173 ~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 173 REYMIVIDEAHNLDK 187 (551)
T ss_dssp TTEEEEETTGGGGGG
T ss_pred CCeEEEEecccchHH
Confidence 457899999999955
No 343
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=22.27 E-value=1.1e+02 Score=22.07 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy18185 102 QKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVST 169 (190)
Q Consensus 102 ~~ei~~iL~~~~~~~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~ 169 (190)
-.-+..+|+... ..--++.++.-+++... +. .+-++|+.+...|...++..||.++++.++.
T Consensus 28 V~rI~R~Lk~~~--~a~RVs~~A~VyLaAvL-Ey---L~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 28 VGRVHRLLRRGN--YAQRIGSGAPVYLTAVL-EY---LAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp HHHHHHHHHTTC--SCSEECSSHHHHHHHHH-HH---HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHccc--cccccchhhHHHHHHHH-HH---HHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 345566665321 11247777888887772 32 4667888888888888899999999998774
No 344
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=21.65 E-value=2.4e+02 Score=20.53 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHh--cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy18185 104 DMEAIIKLRANT--EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTL 170 (190)
Q Consensus 104 ei~~iL~~~~~~--~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~~It~~~V~~~~~~ 170 (190)
-...+++.++.. .++-+..+++..|-+.+ + -+++.+++.+...|...++..|...|++-+..+
T Consensus 67 PF~RLVREI~~~~~~~~R~q~~Al~aLQeaa-E---ayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEAS-E---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCEECHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhcccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 344555555442 35678999999998883 4 488899999998888888888999999876543
No 345
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=21.60 E-value=22 Score=29.36 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=11.6
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.+++++||+|.+..
T Consensus 176 ~~~iViDEah~~~~ 189 (417)
T 2i4i_A 176 CKYLVLDEADRMLD 189 (417)
T ss_dssp CCEEEESSHHHHHH
T ss_pred CcEEEEEChhHhhc
Confidence 47899999999854
No 346
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=21.19 E-value=81 Score=29.92 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.9
Q ss_pred CeEEEEecCCCCCH
Q psy18185 30 PGVLFIDEVHMLDL 43 (190)
Q Consensus 30 ~~Il~IDEi~~L~~ 43 (190)
.++++|||+|.+..
T Consensus 372 ~~liViDEaH~~~~ 385 (936)
T 4a2w_A 372 FTLMIFDECHNTTG 385 (936)
T ss_dssp CSEEEEETGGGCST
T ss_pred CCEEEEECccccCC
Confidence 47999999999964
No 347
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=20.84 E-value=82 Score=28.56 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=11.2
Q ss_pred CeEEEEecCCCCC
Q psy18185 30 PGVLFIDEVHMLD 42 (190)
Q Consensus 30 ~~Il~IDEi~~L~ 42 (190)
.++++|||+|.+.
T Consensus 139 ~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 139 VKILVADEIHLIG 151 (720)
T ss_dssp EEEEEEETGGGGG
T ss_pred CCEEEEECCcccC
Confidence 4899999999874
No 348
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=20.79 E-value=86 Score=23.81 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcCCC----cccHHHHHHHHH
Q psy18185 103 KDMEAIIKLRANT----EGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRT----AISKQDILEVST 169 (190)
Q Consensus 103 ~ei~~iL~~~~~~----~~~~i~~e~l~~i~~~a~~gdlR~ai~lL~~~~~~a~~~g~~----~It~~~V~~~~~ 169 (190)
+++.+.|+..... .|-.+++..+..-... |+..+|.|+..|...+.+....|++ .++.+++.+++.
T Consensus 19 ~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgV-SRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~~~e~~~ 92 (222)
T 3ihu_A 19 DTVFFGIMSGLELGTFVPGQRLVETDLVAHFGV-GRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQETLDVLD 92 (222)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHHHHHH
Confidence 4556666555443 3556776666665566 6789999999999887665444543 466777666554
No 349
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=20.67 E-value=60 Score=20.59 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q psy18185 103 KDMEAIIKLRANTEGHVLDDEALVTLSEI 131 (190)
Q Consensus 103 ~ei~~iL~~~~~~~~~~i~~e~l~~i~~~ 131 (190)
.++.+.|...|+.+|..+..++...|.+.
T Consensus 16 ~eLh~~l~~~A~~~GrSlN~~Iv~~L~~~ 44 (64)
T 1nla_A 16 REVLDLVRKVAEENGRSVNSEIYQRVMES 44 (64)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 36888888899999988888877777654
No 350
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=20.44 E-value=25 Score=31.10 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=11.8
Q ss_pred CCeEEEEecCCCCC
Q psy18185 29 VPGVLFIDEVHMLD 42 (190)
Q Consensus 29 ~~~Il~IDEi~~L~ 42 (190)
...++++||+|.|.
T Consensus 175 ~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 175 EDYLIVIDEAHNLL 188 (540)
T ss_dssp GGEEEEETTGGGGG
T ss_pred CCCEEEEEccccHH
Confidence 35799999999993
No 351
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=20.29 E-value=63 Score=27.46 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=23.2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhcc--CCCEEEEEe
Q psy18185 31 GVLFIDEVHMLDLETFTYLHRALESA--IAPIVIFAT 65 (190)
Q Consensus 31 ~Il~IDEi~~L~~~~~~~L~~~~E~~--~~~~iIlat 65 (190)
+++++|.+| ++++..++++.+... .+.++|+..
T Consensus 308 ~~viiD~Ah--Np~s~~a~l~~l~~~~~~~~i~V~g~ 342 (428)
T 1jbw_A 308 PLIVIDGAH--NPDGINGLITALKQLFSQPITVIAGI 342 (428)
T ss_dssp TTEEEECCC--SHHHHHHHHHHHHHHCSSCCEEEEEC
T ss_pred CcEEEECCc--CHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 578999999 888888888888642 223444433
No 352
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=20.28 E-value=1.6e+02 Score=21.49 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=10.9
Q ss_pred CeEEEEecCCCC
Q psy18185 30 PGVLFIDEVHML 41 (190)
Q Consensus 30 ~~Il~IDEi~~L 41 (190)
+++++|||+..+
T Consensus 106 ~~lliiD~~~~~ 117 (220)
T 2cvh_A 106 FALVVVDSITAH 117 (220)
T ss_dssp EEEEEEECCCCC
T ss_pred CCEEEEcCcHHH
Confidence 589999999987
No 353
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=20.18 E-value=1.3e+02 Score=22.97 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=24.9
Q ss_pred CeEEEEecCCC-CCHHHHHHHHHHhhcc--CCCEEEEEec
Q psy18185 30 PGVLFIDEVHM-LDLETFTYLHRALESA--IAPIVIFATN 66 (190)
Q Consensus 30 ~~Il~IDEi~~-L~~~~~~~L~~~~E~~--~~~~iIlatn 66 (190)
+.++++||.-. |+......+..++.+- .+..+|++|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 48999999865 5776666666555431 1356888885
Done!