RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18185
(190 letters)
>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein
[Transcription].
Length = 450
Score = 249 bits (639), Expect = 4e-82
Identities = 98/183 (53%), Positives = 134/183 (73%), Gaps = 1/183 (0%)
Query: 7 DKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66
D++R+E+N+ V K+I++G AELVPGVLFIDEVHMLD+E F++L+RALES +API+I ATN
Sbjct: 269 DEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIIILATN 328
Query: 67 RGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALV 126
RG +RGTD I SPHGIPLDLLDRLLII T PY+++++ II++RA E L D+AL
Sbjct: 329 RGMTKIRGTD-IESPHGIPLDLLDRLLIISTRPYSREEIREIIRIRAKEEDIELSDDALE 387
Query: 127 TLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKSSARILTENKD 186
L++IG ++LRY VQLLTPA++ AK G + +D+ LFLD K S + + +
Sbjct: 388 YLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVKRSVEYVEKYEG 447
Query: 187 KFM 189
+
Sbjct: 448 LLL 450
>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus. This family consists of the
C-terminal region of several eukaryotic and archaeal
RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin
or TIP49b) proteins. The N-terminal domain contains the
pfam00004 domain. In zebrafish, the liebeskummer (lik)
mutation, causes development of hyperplastic embryonic
hearts. lik encodes Reptin, a component of a
DNA-stimulated ATPase complex. Beta-catenin and Pontin,
a DNA-stimulated ATPase that is often part of complexes
with Reptin, are in the same genetic pathways. The
Reptin/Pontin ratio serves to regulate heart growth
during development, at least in part via the
beta-catenin pathway. TBP-interacting protein 49 (TIP49)
was originally identified as a TBP-binding protein, and
two related proteins are encoded by individual genes,
tip49a and b. Although the function of this gene family
has not been elucidated, they are supposed to play a
critical role in nuclear events because they interact
with various kinds of nuclear factors and have DNA
helicase activities.TIP49a has been suggested to act as
an autoantigen in some patients with autoimmune
diseases.
Length = 395
Score = 233 bits (597), Expect = 2e-76
Identities = 91/143 (63%), Positives = 120/143 (83%), Gaps = 1/143 (0%)
Query: 7 DKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATN 66
+LR+EINK VNK+I++G AE+VPGVLFIDEVHMLD+E F++L+RALES +APIVI ATN
Sbjct: 253 SELREEINKKVNKWIEEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESELAPIVILATN 312
Query: 67 RGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALV 126
RG C +RGT DIISPHGIPLDLLDRLLII T PY +++++ I+++RA EG + +EAL
Sbjct: 313 RGICTIRGT-DIISPHGIPLDLLDRLLIITTEPYTREEIKQILEIRAQEEGVEISEEALD 371
Query: 127 TLSEIGTRSTLRYVVQLLTPAAL 149
L++IG ++LRY +QLLTPA++
Sbjct: 372 LLAKIGEETSLRYAIQLLTPASI 394
>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 38.5 bits (90), Expect = 0.001
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIV-IFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML + F L + LE + + I AT T+ P IP +L
Sbjct: 122 VYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILAT---------TE----PQKIPNTILS 168
Query: 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTL 128
R + +++ + + EG ++++AL +
Sbjct: 169 RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLI 206
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 37.4 bits (87), Expect = 0.003
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIV-IFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML E F L + LE + +V + AT + +P ++
Sbjct: 120 VYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT-------------NLEKVPPTIIS 166
Query: 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLS---EIGTRSTLRYVVQL 143
R +I + + + ++ A EG +D EAL ++ G R L + Q+
Sbjct: 167 RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQV 222
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 35.2 bits (81), Expect = 0.006
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 1 MSAYKSDKLRKEINKVVNKYIDQGIAELV-PGVLFIDEVHMLDLETFTYLHRALESAIAP 59
S + E+ + +AE PGVLFIDE+ L AL +
Sbjct: 55 ASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG----AQNALLRVLET 110
Query: 60 IVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLII 95
+ +R V G + + L DRL I
Sbjct: 111 LNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIR 146
>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 363
Score = 34.8 bits (80), Expect = 0.021
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML +F L + LE I I AT TD IP +L
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILAT---------TD----VEKIPKTILS 168
Query: 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALT 150
R L + +++ + +K E D+ AL ++ S +R + LL A
Sbjct: 169 RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS-MRDALNLLEHAINL 227
Query: 151 AKTN 154
K N
Sbjct: 228 GKGN 231
>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 546
Score = 33.5 bits (76), Expect = 0.059
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML ++F L + LE + I AT TD H IP+ +L
Sbjct: 122 VYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT---------TD----YHKIPVTILS 168
Query: 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPA 147
R + + +Q D++ +K+ E D+++L ++ + +LR + LL A
Sbjct: 169 RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA-YHAKGSLRDALSLLDQA 224
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 32.4 bits (74), Expect = 0.12
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 14/61 (22%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
+ IDEVHML F L + LE + IFAT T+ PH +P+ +L
Sbjct: 122 IFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFAT---------TE----PHKVPITILS 168
Query: 91 R 91
R
Sbjct: 169 R 169
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 32.5 bits (74), Expect = 0.13
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 31 GVLFIDEVHMLDLETFTYLHRALESAIAPIV---IFATNRGRCLVRGTDDIISPH-GIPL 86
GVL++D ++LD L +AL+ + + I + + + T D G+P
Sbjct: 86 GVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPD 145
Query: 87 DLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVL-DDEALVTLSEIG-TRSTLRYV 140
LLDRL L + +D+ I R +DE + +I R L V
Sbjct: 146 HLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQV 202
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 31.9 bits (73), Expect = 0.17
Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 20/133 (15%)
Query: 30 PGVLFIDEVHMLDLETFTYLHRALESA---IAPIVIFATNRGRCLV-----------RGT 75
GV IDE ++ E +H A+E IA I AT RC V
Sbjct: 384 GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPK 443
Query: 76 DDIISPHGIPLDLLDR---LLIIRTTPYNQKD---MEAIIKLRANTEGHVLDDEALVTLS 129
+ +P LL R + +++ P +KD E I+ E V
Sbjct: 444 KTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503
Query: 130 EIGTRSTLRYVVQ 142
E LR +
Sbjct: 504 EERDFELLRKYIS 516
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 31.7 bits (72), Expect = 0.19
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML F + + LE + I AT TD P IP+ +L
Sbjct: 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT---------TD----PQKIPVTVLS 168
Query: 91 RLLIIRTTPYNQKDMEA 107
R L +N K M A
Sbjct: 169 RCL-----QFNLKQMPA 180
>gnl|CDD|215758 pfam00158, Sigma54_activat, Sigma-54 interaction domain.
Length = 168
Score = 30.8 bits (71), Expect = 0.22
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 12/49 (24%)
Query: 31 GVLFIDEVHMLDLETFTYLHRALES-------AIAPI-----VIFATNR 67
G LF+DE+ L LE L R L+ PI +I ATNR
Sbjct: 95 GTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNR 143
>gnl|CDD|234751 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 31.4 bits (72), Expect = 0.23
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 94 IIRTTPYNQKDMEAIIKLRAN---TEGHVLDDEALVTLSEIGTRST--LRYVVQLLTPAA 148
I PY ++ I+K R G V+DDE L ++++ R R + LL A
Sbjct: 201 EIYFPPYTADEIFDILKDRVEEGFYPG-VVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259
Query: 149 LTAKTNGRTAISKQDI 164
L A+ G ++++D+
Sbjct: 260 LIAEREGSRKVTEEDV 275
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 31.3 bits (71), Expect = 0.30
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 20/62 (32%)
Query: 35 IDEVHMLDLETFTYLHRALESAIAP----IVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
IDEVHML F L + LE P I I AT T+ H IPL +L
Sbjct: 124 IDEVHMLSKSAFNALLKTLEE---PPKHVIFILAT---------TE----VHKIPLTILS 167
Query: 91 RL 92
R+
Sbjct: 168 RV 169
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 31.1 bits (71), Expect = 0.31
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 85 PLDLLDRL--------LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTR-- 134
P L DRL L +R D + I RA EA+ L
Sbjct: 153 PAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALG 212
Query: 135 -STLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFL 172
++LR + L A A GRTA+ ++D+ + L L
Sbjct: 213 IASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVL 251
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 31.2 bits (70), Expect = 0.32
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 21/95 (22%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML F + + LE + I AT TD PH +P+ +L
Sbjct: 122 VYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT---------TD----PHKVPVTVLS 168
Query: 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEAL 125
R L + ++M A + A+ HVLD E +
Sbjct: 169 RCL-----QFVLRNMTA--QQVADHLAHVLDSEKI 196
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 30.9 bits (70), Expect = 0.33
Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 25/184 (13%)
Query: 11 KEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAI------------- 57
+ +++ + V +L +DE++ E L ALE
Sbjct: 94 LLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPP 153
Query: 58 APIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLI-IRTTPYNQKDMEAIIKLRANTE 116
IVI N G + + +P LLDR L+ I + ++ E II R
Sbjct: 154 PFIVIATQNPG--------EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARV--- 202
Query: 117 GHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEVSTLFLDAKS 176
G V + + + + + L + + + ++ + + E + L A
Sbjct: 203 GGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASP 262
Query: 177 SARI 180
A +
Sbjct: 263 RASL 266
>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 484
Score = 31.1 bits (70), Expect = 0.38
Identities = 44/150 (29%), Positives = 60/150 (40%), Gaps = 37/150 (24%)
Query: 12 EINKVVNKYIDQGIAELVPGVLF-----------IDEVHMLDLETFTYLHRALESAIAPI 60
EI+ N+ I+ I EL V F IDEVHML ++F L + LE A I
Sbjct: 94 EIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHI 152
Query: 61 V-IFATNRGRCLVRGTDDIISPHGIPLDLLDRL--LIIRTTPYN--QKDMEAIIKLRANT 115
V I AT H IP +L R I + P + Q E + K+
Sbjct: 153 VFILATTEF-------------HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI---- 195
Query: 116 EGHVLDDEALVTLSEIG---TRSTLRYVVQ 142
E D E L +++ G R L ++ Q
Sbjct: 196 ENVQYDQEGLFWIAKKGDGSVRDMLSFMEQ 225
>gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau.
This model represents the well-conserved first ~ 365
amino acids of the translation of the dnaX gene. The
full-length product of the dnaX gene in the model
bacterium E. coli is the DNA polymerase III tau subunit.
A translational frameshift leads to early termination
and a truncated protein subunit gamma, about 1/3 shorter
than tau and present in roughly equal amounts. This
frameshift mechanism is not necessarily universal for
species with DNA polymerase III but appears conserved in
the exterme thermophile Thermus thermophilis [DNA
metabolism, DNA replication, recombination, and repair].
Length = 355
Score = 30.6 bits (70), Expect = 0.38
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 35 IDEVHMLDLETFTYLHRALESAIAPIV-IFATNRGRCLVRGTDDIISPHGIPLDLLDRLL 93
IDEVHML F L + LE +V I AT T+ PH IP +L R
Sbjct: 123 IDEVHMLSKSAFNALLKTLEEPPEHVVFILAT---------TE----PHKIPATILSRCQ 169
Query: 94 IIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG 132
+D+ +K + EG ++DEAL ++
Sbjct: 170 RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAA 208
>gnl|CDD|181606 PRK08997, PRK08997, isocitrate dehydrogenase; Provisional.
Length = 334
Score = 30.5 bits (69), Expect = 0.44
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 108 IIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVV------QLLTPAALTAKTNGR---TA 158
II +R NTEG + T+SE G + ++ +++ A A+ GR TA
Sbjct: 113 IITVRENTEGMYSGEGQ--TVSEDGETAEATSIITRKGAERIVRFAYELARKEGRKKVTA 170
Query: 159 ISKQDILE-VSTLFLDA 174
+ K +I++ S LFL
Sbjct: 171 VHKANIMKSTSGLFLKV 187
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 30.4 bits (68), Expect = 0.51
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIV-IFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDE HML E F L + LE A + + AT PH P+ ++
Sbjct: 122 VFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE-------------PHKFPVTIVS 168
Query: 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEAL 125
R T ++ +EA + EG D A+
Sbjct: 169 RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAV 203
>gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau;
Validated.
Length = 563
Score = 30.5 bits (69), Expect = 0.58
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIV-IFAT 65
V IDEVHML F L + +E IV IFAT
Sbjct: 122 VYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFAT 156
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 30.2 bits (68), Expect = 0.67
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 26/153 (16%)
Query: 30 PGVLFIDEVHML----DLETFTYLHRA----------LESAIAPIVIFATNRGRCLVRGT 75
P ++FIDE+ L R +E A +VI ATNR
Sbjct: 336 PSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR-------- 387
Query: 76 DDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEA-LVTLSEIGTR 134
D + P + DRL+ + + ++ I K+ + L ++ L L+EI
Sbjct: 388 PDDLDPALLRPGRFDRLIYV--PLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445
Query: 135 STLRYVVQLLTPAALTA-KTNGRTAISKQDILE 166
+ + L+ AAL A + R ++ D L+
Sbjct: 446 YSGADIAALVREAALEALREARRREVTLDDFLD 478
>gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 397
Score = 29.9 bits (67), Expect = 0.74
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIA-PIVIFAT 65
V IDEVHML + F + LE I IFAT
Sbjct: 130 VYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164
>gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB. Members of
this protein are LonB, a paralog of the ATP-dependent
protease La (LonA, TIGR00763). LonB proteins are found
strictly, and almost universally, in endospore-forming
bacteria. This protease was shown, in Bacillus subtilis,
to be expressed specifically in the forespore, during
sporulation, under control of sigma(F). The lonB gene,
despite location immediately upstream of lonA, was shown
to be monocistronic. LonB appears able to act on
sigma(H) for post-translation control, but lonB mutation
did not produce an obvious sporulation defect under the
conditions tested. Note that additional paralogs of LonA
and LonB occur in the Clostridium lineage and this model
selects only one per species as the protein that
corresponds to LonB in B. subtilis [Protein fate,
Degradation of proteins, peptides, and glycopeptides,
Cellular processes, Sporulation and germination].
Length = 531
Score = 29.7 bits (67), Expect = 0.94
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 81 PHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYV 140
P IP L R + I P ++++ I K A G L+ AL + + S R
Sbjct: 244 PEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREA 301
Query: 141 VQLLTPAALTAKTNGRTAISKQDILEV 167
V ++ AA A GR I +DI V
Sbjct: 302 VNIVQLAAGIALGEGRKRILAEDIEWV 328
>gnl|CDD|133799 MTH00174, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 252
Score = 29.1 bits (65), Expect = 1.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 78 IISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRAN-TEGHVL 120
I+ P G PL L L II T Y + + ++L AN + GH+L
Sbjct: 149 ILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLL 192
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.5 bits (66), Expect = 1.1
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIA-PIVIFAT 65
V IDEVHML F + LE I IFAT
Sbjct: 130 VYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 29.4 bits (66), Expect = 1.1
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91
V IDE HML E F L + LE P IF + T + IP +L R
Sbjct: 122 VYIIDEAHMLTKEAFNALLKTLEEP-PPRTIF--------ILCTTEY---DKIPPTILSR 169
Query: 92 LLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSE 130
+ ++ ++ +K N E +++AL L++
Sbjct: 170 CQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQ 208
>gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 491
Score = 29.4 bits (66), Expect = 1.2
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIVIF 63
V IDEVHML F L + LE AP V F
Sbjct: 119 VYIIDEVHMLSNSAFNALLKTLEEP-APHVKF 149
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.5 bits (66), Expect = 1.3
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML F + + LE + I AT TD P IP+ +L
Sbjct: 127 VYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT---------TD----PQKIPVTVLS 173
Query: 91 RLLIIRTTPYNQKDM 105
R L +N K M
Sbjct: 174 RCL-----QFNLKQM 183
>gnl|CDD|237495 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
Length = 637
Score = 29.2 bits (66), Expect = 1.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 31 GVLFIDEVHMLDLETFTYLHRALESAIAPI 60
GVLFIDE++ LDLE+ L A++ PI
Sbjct: 228 GVLFIDEINTLDLESQQSLLTAMQEKKFPI 257
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 29.2 bits (65), Expect = 1.5
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML +F L + LE + +FAT TD P +P+ ++
Sbjct: 121 VYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFAT---------TD----PQKLPITVIS 167
Query: 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALT 150
R L P ++ + E D +A+ ++E + +LR + L A
Sbjct: 168 RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE-SAQGSLRDALSLTDQAI-- 224
Query: 151 AKTNGRTAISKQDILEV 167
G+ A+ QD+ E+
Sbjct: 225 --AYGQGAVHHQDVKEM 239
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 29.3 bits (66), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 32 VLFIDEVHMLDLETFTYLHRALE 54
V IDEVHML +F L + LE
Sbjct: 122 VYLIDEVHMLSRSSFNALLKTLE 144
>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
Validated.
Length = 451
Score = 29.0 bits (65), Expect = 1.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 35 IDEVHMLDLETFTYLHRALE 54
IDEVHML E F L + LE
Sbjct: 127 IDEVHMLTKEAFNSLLKTLE 146
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 29.0 bits (65), Expect = 1.8
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91
V IDEVHML F L + LE P IF + T ++ H +P +L R
Sbjct: 123 VYIIDEVHMLSTAAFNALLKTLEEP-PPHAIF--------ILATTEV---HKVPATILSR 170
Query: 92 LLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRS 135
++ DM A ++ A EG L+ AL ++ T S
Sbjct: 171 CQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGS 214
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 28.8 bits (65), Expect = 1.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 35 IDEVHMLDLETFTYLHRALE 54
IDEVHML E F L + LE
Sbjct: 123 IDEVHMLTKEAFNALLKTLE 142
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 28.8 bits (65), Expect = 1.8
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 89 LDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAA 148
L+ L++ P + + AI++ +A G + DE L L++ R+ +R + L
Sbjct: 233 LEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRN-VRELEGALNRLD 291
Query: 149 LTAKTNGRTAISKQDILEVSTLFLDAKSSARI 180
A R AI+ + E+ L A I
Sbjct: 292 AFALFTKR-AITIDLVKEILKDLLRAGEKITI 322
>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 28.6 bits (64), Expect = 2.0
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPI-VIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
V IDEVHML F + + LE + I AT TD P IP+ +L
Sbjct: 122 VYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT---------TD----PQKIPVTVLS 168
Query: 91 RLL 93
R L
Sbjct: 169 RCL 171
>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA
replication, recombination, and repair].
Length = 332
Score = 28.7 bits (65), Expect = 2.1
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 39/133 (29%)
Query: 25 IAELVPG-VLFIDEVHMLDLETFTYLHRALESAIAPIVI---------------F----A 64
+ L G VLFIDE+H L L+ A+E I+I F A
Sbjct: 98 LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157
Query: 65 TNR-GRCLVRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDD 122
T R G + +P L DR +I R Y +++E I+K A G +D+
Sbjct: 158 TTRAGM--------LTNP------LRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDE 203
Query: 123 EALVTLSEIGTRS 135
EA EI RS
Sbjct: 204 EA---ALEIARRS 213
>gnl|CDD|131484 TIGR02431, pcaR_pcaU, beta-ketoadipate pathway transcriptional
regulators, PcaR/PcaU/PobR family. Member of this
family are IclR-type transcriptional regulators with
similar DNA binding sites, able to bind at least three
different metabolites related to protocatechuate
metabolism. Beta-ketoadipate is the inducer for PcaR,
p-hydroxybenzoate for PobR, and protocatechuate for PcaU
[Regulatory functions, DNA interactions].
Length = 248
Score = 28.4 bits (64), Expect = 2.2
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 63 FATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIK--LRANTEGHVL 120
+ T+ GR L+ G DD + L R + TP D +A++ L +G+ L
Sbjct: 134 YCTSMGRVLLAGLDDEELD-----EYLARSTLQALTPRTITDRDALLAELLAVRAQGYAL 188
Query: 121 DDEALVTLSEIGTRS 135
D+ L E+G RS
Sbjct: 189 VDQEL----ELGLRS 199
>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit. All
proteins in this family for which functions are known
are 5'-3' DNA helicases that, as part of a complex with
RuvA homologs serve as a 5'-3' Holliday junction
helicase. RuvA specifically binds Holliday junctions as
a sandwich of two tetramers and maintains the
configuration of the junction. It forms a complex with
two hexameric rings of RuvB, the subunit that contains
helicase activity. The complex drives ATP-dependent
branch migration of the Holliday junction recombination
intermediate. The endonuclease RuvC resolves junctions
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 305
Score = 28.4 bits (64), Expect = 2.3
Identities = 41/136 (30%), Positives = 53/136 (38%), Gaps = 25/136 (18%)
Query: 25 IAELVPG-VLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGR---------CLVRG 74
+ L G VLFIDE+H L L+ A+E IVI R LV
Sbjct: 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135
Query: 75 TDD---IISPHGIPLDLLDRLLII-RTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSE 130
T + SP L DR II R Y +++ I+ A ++ EA E
Sbjct: 136 TTRAGMLTSP------LRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEA---ALE 186
Query: 131 IGTRS--TLRYVVQLL 144
I RS T R +LL
Sbjct: 187 IARRSRGTPRIANRLL 202
>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau;
Validated.
Length = 507
Score = 28.3 bits (63), Expect = 2.6
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIV-IFAT 65
+ IDEVHML F L + LE I+ IFAT
Sbjct: 131 IFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165
>gnl|CDD|215930 pfam00459, Inositol_P, Inositol monophosphatase family.
Length = 269
Score = 27.7 bits (62), Expect = 3.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 12 EINKVVNKYIDQGIAELVPGVLFIDE 37
+K + I + +A L PG I E
Sbjct: 43 AADKAAEELILEALAALFPGHPIIGE 68
>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed.
Length = 328
Score = 27.8 bits (63), Expect = 3.7
Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 38/125 (30%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIVI---------------F----ATNR-GRCL 71
VLFIDE+H L L+ A+E I+I F AT R G
Sbjct: 105 VLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGL-- 162
Query: 72 VRGTDDIISPHGIPLDLLDRL-LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSE 130
+ SP L DR ++ R Y +++E I+K A G +D+E + E
Sbjct: 163 ------LTSP------LRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGAL---E 207
Query: 131 IGTRS 135
I RS
Sbjct: 208 IARRS 212
>gnl|CDD|233120 TIGR00764, lon_rel, lon-related putative ATP-dependent protease.
This model represents a set of proteins with extensive
C-terminal homology to the ATP-dependent protease La,
product of the lon gene of E. coli. The model is based
on a seed alignment containing only archaeal members,
but several bacterial proteins match the model well.
Because several species, including Thermotoga maritima
and Treponema pallidum, contain both a close homolog of
the lon protease and nearly full-length homolog of the
members of this family, we suggest there may also be a
functional division between the two families. Members of
this family from Pyrococcus horikoshii and Pyrococcus
abyssi each contain a predicted intein [Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 608
Score = 27.9 bits (62), Expect = 3.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 31 GVLFIDEVHMLDLETFTYLHRALESAIAPI 60
GVL+IDE+ + LE YL AL+ PI
Sbjct: 219 GVLYIDEIKTMPLEVQQYLLTALQDKKFPI 248
>gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and
metabolism].
Length = 505
Score = 27.6 bits (61), Expect = 4.0
Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 4 YKSDKLRKEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFT 47
+++ ++R+E+ VV ++D+G+ +D + +
Sbjct: 171 WENPEVREELLDVVKFWLDKGVD-----GFRLDAAKHISKDFGL 209
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 27.5 bits (62), Expect = 4.2
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 32/101 (31%)
Query: 35 IDEVHMLDLETFTYLHRALESAIAP----IVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
IDEVHML F L + LE P I I AT T+ PH IP
Sbjct: 125 IDEVHMLSTGAFNALLKTLEE---PPAHVIFILAT---------TE----PHKIPAT--- 165
Query: 91 RLLII-RTTPYN-----QKDMEAIIKLRANTEGHVLDDEAL 125
I+ R ++ +D+ +K + EG +DEAL
Sbjct: 166 ---ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEAL 203
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 27.6 bits (62), Expect = 4.4
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 91 RLLIIRTTPYN-------QKDMEAIIKLRANTEGHVLDDE 123
RL+I+ TP+N DM A+ +L A T+ +VL DE
Sbjct: 165 RLIIL-NTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDE 203
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 27.6 bits (62), Expect = 4.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 21 IDQGIAELVPGVLFIDEVHML 41
ID+ A P +LFIDE H L
Sbjct: 272 IDEVKASPQPIILFIDEAHTL 292
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 135
Score = 26.9 bits (60), Expect = 4.9
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 21 IDQGIAELVPGVL----------FIDEVHMLDLETFTYLHRALE 54
ID G A V G L +DE++ + + L L+
Sbjct: 48 IDPGGASWVDGPLVRAAREGEIAVLDEINRANPDVLNSLLSLLD 91
>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 367
Score = 27.5 bits (61), Expect = 5.0
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIA-PIVIFATNRGRCLVRGTDDIISPHGIPLDLLD 90
+ IDEVHML F + LE A I I AT H I +L
Sbjct: 111 IYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTE-------------KHKIIPTILS 157
Query: 91 RLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEAL 125
R I KD++ + A EG +D+AL
Sbjct: 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDAL 192
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific
[General function prediction only].
Length = 830
Score = 26.7 bits (59), Expect = 9.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 31 GVLFIDEVHMLDLE 44
G + IDE+H L+ E
Sbjct: 340 GTVVIDEIHTLEDE 353
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 26.2 bits (57), Expect = 9.6
Identities = 13/73 (17%), Positives = 27/73 (36%)
Query: 25 IAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGI 84
+L P VL +DE+ L L LE +++ + ++ D+ +
Sbjct: 74 ARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPAL 133
Query: 85 PLDLLDRLLIIRT 97
DR +++
Sbjct: 134 LRRRFDRRIVLLL 146
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 25.7 bits (57), Expect = 9.8
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 31 GVLFIDEVHMLDLETFTYLHRALE--SAIAPIVIFATNR 67
+L IDE L LE L + +++ T
Sbjct: 81 PLLIIDEAQHLSLEALEELRDLYDLSEKGIQVILVGTPE 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.374
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,694,116
Number of extensions: 941628
Number of successful extensions: 996
Number of sequences better than 10.0: 1
Number of HSP's gapped: 988
Number of HSP's successfully gapped: 95
Length of query: 190
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 99
Effective length of database: 6,901,388
Effective search space: 683237412
Effective search space used: 683237412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)